Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALG10	84920	genome.wustl.edu	37	12	34177061	34177061	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	34177061	34177061	T	G	SNP	ALG10	NM_032834.3	human	genbank	58_37c	+1	reviewed	nonsense	c.336	p.Y112*	0.999	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
APC	324	genome.wustl.edu	37	5	112177345	112177345	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	112177345	112177345	A	G	SNP	APC	NM_000038.4	human	genbank	58_37c	+1	reviewed	silent	c.6054	p.P2018	0.325	HMMPfam_APC_crr	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat	-	no_errors
ARID1B	57492	genome.wustl.edu	37	6	157454190	157454190	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	6	157454190	157454190	T	-	DEL	ARID1B	NM_017519.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.2187	p.Q730fs	0.997	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
C4BPB	725	genome.wustl.edu	37	1	207262894	207262894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	1	207262894	207262894	G	A	SNP	C4BPB	NM_000716.3	human	genbank	58_37c	+1	reviewed	silent	c.18	p.A6	0.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121282319	121282319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	8	121282319	121282319	C	T	SNP	COL14A1	NM_021110.1	human	genbank	58_37c	+1	validated	missense	c.3119	p.S1040F	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
DLEC1	9940	genome.wustl.edu	37	3	38163187	38163187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	3	38163187	38163187	G	A	SNP	DLEC1	NM_007337.2	human	genbank	58_37c	+1	reviewed	silent	c.4935	p.G1645	0.984	NULL	NULL	-	no_errors
ENTPD5	957	genome.wustl.edu	37	14	74436746	74436746	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	74436746	74436746	A	G	SNP	ENTPD5	NM_001249.2	human	genbank	58_37c	-1	reviewed	silent	c.1167	p.D389	0.756	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
ESR2	2100	genome.wustl.edu	37	14	64694310	64694310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	64694310	64694310	G	C	SNP	ESR2	NM_001040275.1	human	genbank	58_37c	-1	reviewed	missense	c.1429	p.L477V	0.000	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
EXOC7	23265	genome.wustl.edu	37	17	74084953	74084953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	17	74084953	74084953	G	A	SNP	EXOC7	NM_001145297.2	human	genbank	58_37c	-1	validated	missense	c.1252	p.R418W	1.000	HMMPfam_Exo70	HMMPfam_Exo70	-	no_errors
GCC2	9648	genome.wustl.edu	37	2	109099566	109099566	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	109099566	109099566	C	A	SNP	GCC2	NM_181453.3	human	genbank	58_37c	+1	reviewed	missense	c.3394	p.Q1132K	1.000	NULL	HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
IDUA	3425	genome.wustl.edu	37	4	995476	995476	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	4	995476	995476	A	C	SNP	IDUA	NM_000203.3	human	genbank	58_37c	+1	reviewed	missense	c.599	p.N200T	1.000	HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_39,PatternScan_GLYCOSYL_HYDROL_F39,superfamily_Glyco_hydro_cat,superfamily_SSF51011	-	no_errors
IFRD1	3475	genome.wustl.edu	37	7	112112289	112112289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	112112289	112112289	A	G	SNP	IFRD1	NM_001007245.1	human	genbank	58_37c	+1	validated	missense	c.1057	p.T353A	1.000	NULL	HMMPfam_IFRD_C,HMMPfam_IFRD,superfamily_ARM repeat	-	no_errors
INSL3	3640	genome.wustl.edu	37	19	17927802	17927802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	19	17927802	17927802	G	A	SNP	INSL3	NM_005543.2	human	genbank	58_37c	-1	reviewed	missense	c.257	p.T86M	0.000	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like	HMMPfam_Insulin,PatternScan_INSULIN,HMMSmart_SM00078,superfamily_Insulin-like	-	no_errors
ITGB3BP	23421	genome.wustl.edu	37	1	63955841	63955841	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	1	63955841	63955841	A	T	SNP	ITGB3BP	NM_014288.3	human	genbank	58_37c	-1	provisional	missense	c.97	p.S33T	0.981	NULL	HMMPfam_NRIF3	-	no_errors
ITIH1	3697	genome.wustl.edu	37	3	52813627	52813627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	3	52813627	52813627	G	A	SNP	ITIH1	ENST00000480409	human	ensembl	58_37c	+1	known	missense	c.590	p.R197Q	0.000	NULL	HMMSmart_SM00609,HMMPfam_VIT	-	no_errors
LRP4	4038	genome.wustl.edu	37	11	46916348	46916348	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	46916348	46916348	G	A	SNP	LRP4	NM_002334.3	human	genbank	58_37c	-1	reviewed	silent	c.1332	p.F444	1.000	superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MAPK14	1432	genome.wustl.edu	37	6	36063825	36063825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	6	36063825	36063825	G	T	SNP	MAPK14	NM_139012.2	human	genbank	58_37c	+1	reviewed	missense	c.744	p.K248N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
N4BP3	23138	genome.wustl.edu	37	5	177548592	177548592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	177548592	177548592	C	T	SNP	N4BP3	NM_015111.1	human	genbank	58_37c	+1	validated	missense	c.1225	p.R409W	1.000	HMMPfam_Fez1	HMMPfam_Fez1	-	no_errors
NSUN5	55695	genome.wustl.edu	37	7	72718330	72718330	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	72718330	72718330	A	G	SNP	NSUN5	NM_148956.2	human	genbank	58_37c	-1	reviewed	silent	c.831	p.S277	0.005	superfamily_SSF53335	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335	-	no_errors
OR5W2	390148	genome.wustl.edu	37	11	55681318	55681318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	55681318	55681318	C	T	SNP	OR5W2	NM_001001960.1	human	genbank	58_37c	-1	provisional	silent	c.741	p.A247	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121909229	byCluster	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	10	89692905	89692905	G	A	SNP	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	missense	c.389	p.R130Q	1.000	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RHEBL1	121268	genome.wustl.edu	37	12	49459216	49459216	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	49459216	49459216	T	C	SNP	RHEBL1	NM_144593.1	human	genbank	58_37c	-1	provisional	splice_site	c.381-2	e7-2	0.997	-	-	-	no_errors
SF3B1	23451	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	198266834	198266834	T	C	SNP	SF3B1	NM_012433.2	human	genbank	58_37c	-1	reviewed	missense	c.2098	p.K700E	1.000	HMMPfam_HEAT,superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_SF3b1,superfamily_ARM repeat	-	no_errors
SLFN14	342618	genome.wustl.edu	37	17	33884703	33884703	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	17	33884703	33884703	G	A	SNP	SLFN14	NM_001129820.1	human	genbank	58_37c	-1	provisional	missense	c.379	p.R127C	0.794	NULL	HMMPfam_AAA_4	-	no_errors
SUPT5H	6829	genome.wustl.edu	37	19	39949655	39949655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	19	39949655	39949655	G	A	SNP	SUPT5H	NM_001111020.2	human	genbank	58_37c	+1	validated	missense	c.400	p.E134K	1.000	NULL	HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain	-	no_errors
