Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA7	10347	genome.wustl.edu	37	19	1041509	1041509	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	1041509	1041509	G	A	SNP	ABCA7	NM_019112.3	human	genbank	58_37c	+1	reviewed	missense	c.67	p.V23I	0.679	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACRBP	84519	genome.wustl.edu	37	12	6753326	6753326	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	6753326	6753326	G	T	SNP	ACRBP	NM_032489.2	human	genbank	58_37c	-1	reviewed	nonsense	c.921	p.Y307*	0.893	NULL	HMMSmart_KAZAL,HMMPfam_PBP_sp32,superfamily_SSF100895	-	no_errors
AGBL3	340351	genome.wustl.edu	37	7	134800290	134800290	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	134800290	134800290	A	G	SNP	AGBL3	NM_178563.3	human	genbank	58_37c	+1	provisional	missense	c.2269	p.S757G	0.002	NULL	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases	-	no_errors
AGPAT5	55326	genome.wustl.edu	37	8	6590094	6590097	+	Frame_Shift_Del	DEL	TATG	TATG	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TATG	TATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	6590094	6590097	TATG	-	DEL	AGPAT5	NM_018361.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.418_421	p.Y140fs	1.000:1.000:0.996:1.000	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	-	no_errors
ALDH8A1	64577	genome.wustl.edu	37	6	135263624	135263639	+	Frame_Shift_Del	DEL	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	135263624	135263639	AGGCTGGAGGAAGCGA	-	DEL	ALDH8A1	NM_022568.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.365_350	p.F117fs	1.000:1.000:0.996:0.761:0.521:0.488:0.998:0.995:0.864:1.000:0.999:0.005:1.000:1.000:0.921:1.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
AMPH	273	genome.wustl.edu	37	7	38424430	38424430	+	Missense_Mutation	SNP	G	G	A	rs147817118	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	38424430	38424430	G	A	SNP	AMPH	NM_001635.2	human	genbank	58_37c	-1	reviewed	missense	c.2077	p.R693C	0.998	HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721	-	no_errors
APOBEC2	10930	genome.wustl.edu	37	6	41029073	41029073	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	41029073	41029073	G	T	SNP	APOBEC2	NM_006789.3	human	genbank	58_37c	+1	validated	silent	c.138	p.R46	0.998	HMMPfam_APOBEC_N	HMMPfam_APOBEC_C,HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like	-	no_errors
ARHGAP23	57636	genome.wustl.edu	37	17	36623524	36623524	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	36623524	36623524	G	T	SNP	ARHGAP23	NM_020876.1	human	genbank	58_37c	+1	provisional	missense	c.1318	p.A440S	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
ASPRV1	151516	genome.wustl.edu	37	2	70188292	70188300	+	In_Frame_Del	DEL	CCCCAGGGA	CCCCAGGGA	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	CCCCAGGGA	CCCCAGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	70188292	70188300	CCCCAGGGA	-	DEL	ASPRV1	NM_152792.2	human	genbank	58_37c	-1	validated	in_frame_del	c.529_521	p.VPG174in_frame_del	0.000:0.000:0.000:0.000:0.000:0.003:0.000:0.000:0.001	NULL	PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic	-	no_errors
ATP11A	23250	genome.wustl.edu	37	13	113512489	113512489	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	13	113512489	113512489	C	A	SNP	ATP11A	NM_032189.3	human	genbank	58_37c	+1	reviewed	missense	c.2552	p.A851D	1.000	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BAIAP3	8938	genome.wustl.edu	37	16	1394620	1394620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	16	1394620	1394620	C	T	SNP	BAIAP3	NM_003933.3	human	genbank	58_37c	+1	reviewed	missense	c.1783	p.P595S	0.000	HMMPfam_DUF1041	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
BAZ1A	11177	genome.wustl.edu	37	14	35245193	35245193	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	14	35245193	35245193	A	T	SNP	BAZ1A	NM_013448.2	human	genbank	58_37c	-1	validated	nonsense	c.2765	p.L922*	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_DDT,superfamily_FYVE/PHD zinc finger,HMMPfam_WAC_Acf1_DNA_bd,PatternScan_BROMODOMAIN_1,HMMSmart_SM00571,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
BCL9	607	genome.wustl.edu	37	1	147092549	147092550	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	147092549	147092550	TG	-	DEL	BCL9	NM_004326.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2588_2589	p.L863fs	1.000:1.000	NULL	NULL	-	no_errors
BTBD17	388419	genome.wustl.edu	37	17	72357932	72357932	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	72357932	72357932	A	C	SNP	BTBD17	NM_001080466.1	human	genbank	58_37c	-1	provisional	silent	c.27	p.P9	0.012	NULL	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	141012420	141012420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	141012420	141012420	A	G	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	missense	c.5800	p.K1934E	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA1I	8911	genome.wustl.edu	37	22	40066845	40066845	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	40066845	40066845	C	G	SNP	CACNA1I	NM_021096.3	human	genbank	58_37c	+1	reviewed	missense	c.4425	p.H1475Q	0.759	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
CAPN6	827	genome.wustl.edu	37	X	110496378	110496378	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	110496378	110496378	G	A	SNP	CAPN6	NM_014289.3	human	genbank	58_37c	-1	reviewed	missense	c.364	p.H122Y	1.000	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001	HMMPfam_C2,HMMSmart_C2,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_CysPc,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB,superfamily_SSF54001	-	no_errors
CLDN15	24146	genome.wustl.edu	37	7	100876136	100876136	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	100876136	100876136	C	G	SNP	CLDN15	NM_014343.2	human	genbank	58_37c	-1	reviewed	missense	c.442	p.D148H	0.994	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CRTC2	200186	genome.wustl.edu	37	1	153923850	153923850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	153923850	153923850	C	T	SNP	CRTC2	NM_181715.1	human	genbank	58_37c	-1	provisional	silent	c.1290	p.V430	1.000	NULL	NULL	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34276437	34276437	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	34276437	34276437	G	T	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	silent	c.1233	p.G411	0.980	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
CUL7	9820	genome.wustl.edu	37	6	43016268	43016268	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	43016268	43016268	T	A	SNP	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	missense	c.1865	p.Q622L	0.276	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
DDX55	57696	genome.wustl.edu	37	12	124103295	124103295	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	124103295	124103295	G	C	SNP	DDX55	NM_020936.1	human	genbank	58_37c	+1	reviewed	missense	c.1244	p.R415T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH12	201625	genome.wustl.edu	37	3	57401248	57401248	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	3	57401248	57401248	A	G	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	missense	c.5701	p.Y1901H	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11701070	11701070	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	11701070	11701070	G	C	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.8380	p.V2794L	0.989	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNASE1L2	1775	genome.wustl.edu	37	16	2287303	2287303	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	16	2287303	2287303	G	A	SNP	DNASE1L2	NM_001374.2	human	genbank	58_37c	+1	validated	splice_site	c.317+1	e3+1	1.000	-	-	-	no_errors
DOCK11	139818	genome.wustl.edu	37	X	117782984	117782984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	117782984	117782984	C	T	SNP	DOCK11	NM_144658.3	human	genbank	58_37c	+1	validated	missense	c.4475	p.S1492L	1.000	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto,superfamily_SSF50729	-	no_errors
DPY19L3	147991	genome.wustl.edu	37	19	32928151	32928151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	32928151	32928151	G	A	SNP	DPY19L3	NM_207325.2	human	genbank	58_37c	+1	validated	missense	c.502	p.A168T	0.979	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
DUOX1	53905	genome.wustl.edu	37	15	45428084	45428084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	15	45428084	45428084	C	G	SNP	DUOX1	NM_017434.3	human	genbank	58_37c	+1	reviewed	missense	c.802	p.P268A	1.000	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_An_peroxidase,HMMSmart_SM00054,superfamily_Heme-dependent peroxidases,HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
EIF2C3	192669	genome.wustl.edu	37	1	36432633	36432637	+	Frame_Shift_Del	DEL	GAAGT	GAAGT	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	GAAGT	GAAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	36432633	36432637	GAAGT	-	DEL	EIF2C3	NM_024852.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.269_273	p.R90fs	1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_RNaseH_fold,HMMPfam_DUF1785,superfamily_SSF101690	-	no_errors
ENPP2	5168	genome.wustl.edu	37	8	120569768	120569768	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	120569768	120569768	T	C	SNP	ENPP2	NM_006209.3	human	genbank	58_37c	-1	reviewed	missense	c.2741	p.E914G	1.000	superfamily_His-Me finger endonucleases	HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,HMMPfam_Endonuclease_NS,HMMSmart_SM00477,HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like,superfamily_His-Me finger endonucleases,superfamily_Somatomedin B domain	-	no_errors
ENSG00000173213	0	genome.wustl.edu	37	18	48227	48228	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	18	48227	48228	TG	-	DEL	ENSG00000173213	ENST00000308911	human	ensembl	58_37c	-1	known	frame_shift_del	c.498_497	p.T166fs	1.000:1.000	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ	HMMPfam_Tubulin,superfamily_Tub_FtsZ_C,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin_FtsZ	-	no_errors
FAM177B	400823	genome.wustl.edu	37	1	222920385	222920385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	222920385	222920385	G	A	SNP	FAM177B	NM_207468.2	human	genbank	58_37c	+1	validated	missense	c.203	p.R68Q	0.530	NULL	NULL	-	no_errors
FFAR3	2865	genome.wustl.edu	37	19	35862464	35862464	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	35862464	35862464	T	C	SNP	FFAR3	ENST00000246538	human	ensembl	58_37c	+1	known	missense	c.203	p.L68P	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
FLJ46321	389763	genome.wustl.edu	37	9	84608347	84608347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	84608347	84608347	C	T	SNP	FLJ46321	NM_001001670.2	human	genbank	58_37c	+1	validated	missense	c.2962	p.P988S	0.002	NULL	NULL	-	no_errors
FRAS1	80144	genome.wustl.edu	37	4	79236807	79236807	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	79236807	79236807	G	T	SNP	FRAS1	NM_025074.6	human	genbank	58_37c	+1	reviewed	nonsense	c.1738	p.E580*	0.002	HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain	-	no_errors
GORAB	92344	genome.wustl.edu	37	1	170521402	170521402	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	170521402	170521402	A	T	SNP	GORAB	NM_152281.2	human	genbank	58_37c	+1	reviewed	silent	c.984	p.P328	0.105	NULL	NULL	-	no_errors
GRPEL2	134266	genome.wustl.edu	37	5	148730786	148730786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	5	148730786	148730786	G	A	SNP	GRPEL2	NM_152407.3	human	genbank	58_37c	+1	validated	missense	c.619	p.G207S	1.000	HMMPfam_GrpE,PatternScan_GRPE,superfamily_GrpE_head	HMMPfam_GrpE,PatternScan_GRPE,superfamily_GrpE_head	-	no_errors
HSP90AB4P	664618	genome.wustl.edu	37	15	58983416	58983416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	15	58983416	58983416	A	T	SNP	HSP90AB4P	ENST00000380522	human	ensembl	58_37c	-1	known	missense	c.1404	p.F468L	1.000	HMMPfam_HSP90	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
JARID2	3720	genome.wustl.edu	37	6	15496730	15496730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	6	15496730	15496730	G	A	SNP	JARID2	NM_004973.2	human	genbank	58_37c	+1	reviewed	missense	c.1274	p.R425Q	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,HMMPfam_JmjC	-	no_errors
LAMA1	284217	genome.wustl.edu	37	18	7049147	7049147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	18	7049147	7049147	G	A	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	missense	c.698	p.T233M	1.000	HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LGALS12	85329	genome.wustl.edu	37	11	63276064	63276064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	11	63276064	63276064	G	A	SNP	LGALS12	NM_001142535.1	human	genbank	58_37c	+1	reviewed	missense	c.175	p.A59T	0.507	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LGALS4	3960	genome.wustl.edu	37	19	39299504	39299504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	39299504	39299504	C	A	SNP	LGALS4	NM_006149.3	human	genbank	58_37c	-1	reviewed	missense	c.219	p.K73N	1.000	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LOC100287042	0	genome.wustl.edu	37	17	73268740	73268742	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	73268740	73268742	GGA	-	DEL	LOC100287042	XM_002343543.1	human	genbank	58_37c	+1	model	in_frame_del	c.616_618	p.G206in_frame_del	0.004:0.002:0.000	NULL	NULL	-	no_errors
LOC100288413	0	genome.wustl.edu	37	4	53610742	53610742	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	53610742	53610742	G	A	SNP	LOC100288413	XM_002342451.1	human	genbank	58_37c	-1	model	nonsense	c.946	p.R316*	0.025	NULL	NULL	-	no_errors
MCC	4163	genome.wustl.edu	37	5	112824043	112824045	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	GCC	GCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	5	112824043	112824045	GCC	-	DEL	MCC	NM_001085377.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.69_67	p.G23in_frame_del	0.731:0.740:0.741	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_MCC-bdg_PDZ,superfamily_EF-hand	-	no_errors
MED12	9968	genome.wustl.edu	37	X	70356831	70356835	+	Frame_Shift_Del	DEL	AGGCA	AGGCA	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	AGGCA	AGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	70356831	70356835	AGGCA	-	DEL	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.5503_5507	p.Q1836fs	0.995:0.997:0.997:1.000:0.998	NULL	HMMPfam_Med12	-	no_errors
MICAL3	57553	genome.wustl.edu	37	22	18354628	18354628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	18354628	18354628	C	T	SNP	MICAL3	NM_015241.2	human	genbank	58_37c	-1	provisional	silent	c.2403	p.S801	0.069	HMMPfam_LIM,HMMSmart_SM00132	HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
MIR211	0	genome.wustl.edu	37	15	31357292	31357292	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	15	31357292	31357292	A	G	SNP	MIR211	ENST00000384969	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151871273	151871273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	151871273	151871273	C	T	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.9317	p.G3106D	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MSH3	4437	genome.wustl.edu	37	5	80064756	80064756	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	5	80064756	80064756	T	A	SNP	MSH3	NM_002439.3	human	genbank	58_37c	+1	reviewed	missense	c.2187	p.H729Q	1.000	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III	HMMPfam_MutS_V,HMMSmart_SM00534,PatternScan_DNA_MISMATCH_REPAIR_2,HMMPfam_MutS_I,HMMPfam_MutS_III,HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_II,superfamily_DNA repair protein MutS domain II,superfamily_DNA repair protein MutS domain I,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MUC12	10071	genome.wustl.edu	37	7	100634705	100634705	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	100634705	100634705	T	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	silent	c.1290	p.T430	0.001	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NHS	4810	genome.wustl.edu	37	X	17750565	17750565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	17750565	17750565	C	T	SNP	NHS	NM_198270.2	human	genbank	58_37c	+1	reviewed	missense	c.4874	p.S1625F	1.000	NULL	NULL	-	no_errors
NLGN3	54413	genome.wustl.edu	37	X	70386913	70386913	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	70386913	70386913	T	G	SNP	NLGN3	NM_018977.3	human	genbank	58_37c	+1	reviewed	silent	c.906	p.A302	0.995	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474	-	no_errors
NT5C1B	93034	genome.wustl.edu	37	2	18765450	18765450	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	18765450	18765450	T	A	SNP	NT5C1B	NM_001002006.1	human	genbank	58_37c	-1	validated	missense	c.975	p.K325N	1.000	NULL	HMMPfam_5-nucleotidase	-	no_errors
ODZ3	55714	genome.wustl.edu	37	4	183696086	183696086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	183696086	183696086	G	A	SNP	ODZ3	NM_001080477.1	human	genbank	58_37c	+1	provisional	missense	c.5084	p.S1695N	1.000	superfamily_ConA_like_lec_gl	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,superfamily_CarboxypepD_reg,superfamily_ConA_like_lec_gl,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196,superfamily_SSF63829	-	no_errors
OR1J1	347168	genome.wustl.edu	37	9	125239431	125239431	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	125239431	125239431	A	G	SNP	OR1J1	NM_001004451.1	human	genbank	58_37c	-1	provisional	missense	c.775	p.Y259H	0.147	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2L13	284521	genome.wustl.edu	37	1	248263169	248263169	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	248263169	248263169	T	C	SNP	OR2L13	NM_175911.2	human	genbank	58_37c	+1	provisional	silent	c.492	p.H164	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PEG3	5178	genome.wustl.edu	37	19	57335971	57335971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	57335971	57335971	G	T	SNP	PEG3	NM_006210.2	human	genbank	58_37c	-1	reviewed	missense	c.53	p.P18Q	0.540	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PKHD1	5314	genome.wustl.edu	37	6	51484286	51484286	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	51484286	51484286	T	A	SNP	PKHD1	NM_138694.3	human	genbank	58_37c	-1	reviewed	missense	c.11818	p.N3940Y	0.001	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
PMS1	5378	genome.wustl.edu	37	2	190718672	190718672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	190718672	190718672	G	A	SNP	PMS1	NM_000534.4	human	genbank	58_37c	+1	reviewed	missense	c.830	p.R277Q	1.000	HMMPfam_DNA_mis_repair,superfamily_Ribosomal_S5_D2-typ_fold	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_HMG-box,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
PNPLA3	80339	genome.wustl.edu	37	22	44340631	44340635	+	Frame_Shift_Del	DEL	ACAGG	ACAGG	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	ACAGG	ACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	44340631	44340635	ACAGG	-	DEL	PNPLA3	NM_025225.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1173_1177	p.Q392fs	0.000:0.000:0.000:0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors
PNPLA3	80339	genome.wustl.edu	37	22	44340638	44340639	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	44340638	44340639	TT	-	DEL	PNPLA3	NM_025225.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1180_1181	p.F394fs	0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors
PNPLA3	80339	genome.wustl.edu	37	22	44340640	44340641	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	22	44340640	44340641	-	A	INS	PNPLA3	NM_025225.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1182_1183	p.T394fs	0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors
POLQ	10721	genome.wustl.edu	37	3	121207554	121207554	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	3	121207554	121207554	A	G	SNP	POLQ	NM_199420.3	human	genbank	58_37c	-1	validated	silent	c.4224	p.D1408	0.000	NULL	HMMPfam_DNA_pol_A,HMMSmart_SM00482,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,PatternScan_DNA_POLYMERASE_A,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_DNA/RNA polymerases	-	no_errors
POLR1C	9533	genome.wustl.edu	37	6	43487161	43487161	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	6	43487161	43487161	C	T	SNP	POLR1C	NM_203290.1	human	genbank	58_37c	+1	validated	nonsense	c.232	p.R78*	0.105	PatternScan_RNA_POL_D_30KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662	PatternScan_RNA_POL_D_30KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662	-	no_errors
PPFIA4	8497	genome.wustl.edu	37	1	203030799	203030799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	203030799	203030799	G	T	SNP	PPFIA4	NM_015053.1	human	genbank	58_37c	+1	validated	missense	c.1349	p.W450L	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PPM1J	333926	genome.wustl.edu	37	1	113253093	113253093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	1	113253093	113253093	A	G	SNP	PPM1J	NM_005167.5	human	genbank	58_37c	-1	reviewed	silent	c.1359	p.N453	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PXDN	7837	genome.wustl.edu	37	2	1667407	1667407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	1667407	1667407	C	A	SNP	PXDN	NM_012293.1	human	genbank	58_37c	-1	validated	missense	c.1537	p.V513F	0.991	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
QRICH2	84074	genome.wustl.edu	37	17	74289101	74289101	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	74289101	74289101	A	C	SNP	QRICH2	NM_032134.1	human	genbank	58_37c	-1	provisional	missense	c.1209	p.D403E	0.000	NULL	NULL	-	no_errors
RB1	5925	genome.wustl.edu	37	13	48881488	48881489	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	-	-	-	AG	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	13	48881488	48881489	-	AG	INS	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.210_211	p.A73fs	1.000:1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RPGR	6103	genome.wustl.edu	37	X	38145532	38145534	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	38145532	38145534	TCC	-	DEL	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2720_2718	p.E907in_frame_del	0.994:0.977:0.978	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
RPS6KA3	6197	genome.wustl.edu	37	X	20195139	20195139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	20195139	20195139	G	C	SNP	RPS6KA3	NM_004586.2	human	genbank	58_37c	-1	reviewed	missense	c.909	p.F303L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SARM1	23098	genome.wustl.edu	37	17	26723044	26723044	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	26723044	26723044	A	-	DEL	SARM1	ENST00000379061	human	ensembl	58_37c	+1	known	frame_shift_del	c.2038	p.K680fs	1.000	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_ARM repeat	-	no_errors
SEC23B	10483	genome.wustl.edu	37	20	18507096	18507096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	20	18507096	18507096	G	C	SNP	SEC23B	NM_006363.4	human	genbank	58_37c	+1	reviewed	missense	c.914	p.G305A	1.000	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995	HMMPfam_zf-Sec23_Sec24,superfamily_Znf_Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Sec23_helical,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_SSF53300,superfamily_SSF81995,superfamily_SSF82754	-	no_errors
SIRT7	51547	genome.wustl.edu	37	17	79872286	79872286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	79872286	79872286	C	A	SNP	SIRT7	NM_016538.1	human	genbank	58_37c	-1	reviewed	missense	c.700	p.D234Y	1.000	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
SLC34A2	10568	genome.wustl.edu	37	4	25678170	25678181	+	In_Frame_Del	DEL	GTGCTGCCGCGC	GTGCTGCCGCGC	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	GTGCTGCCGCGC	GTGCTGCCGCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	25678170	25678181	GTGCTGCCGCGC	-	DEL	SLC34A2	NM_006424.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1872_1883	p.RACC627in_frame_del	0.187:0.979:1.000:1.000:1.000:1.000:1.000:0.999:0.982:0.007:0.000:0.030	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
SLC34A2	10568	genome.wustl.edu	37	4	25678181	25678181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	25678181	25678181	C	T	SNP	SLC34A2	NM_006424.2	human	genbank	58_37c	+1	reviewed	missense	c.1883	p.A628V	0.030	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
SPTAN1	6709	genome.wustl.edu	37	9	131378115	131378115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	9	131378115	131378115	A	G	SNP	SPTAN1	NM_001130438.1	human	genbank	58_37c	+1	validated	missense	c.5353	p.I1785V	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
TBCK	93627	genome.wustl.edu	37	4	107230071	107230071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	107230071	107230071	G	A	SNP	TBCK	NM_033115.3	human	genbank	58_37c	-1	validated	missense	c.47	p.A16V	1.000	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
TMEM229A	0	genome.wustl.edu	37	7	123672457	123672462	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	7	123672457	123672462	GCTGCT	-	DEL	TMEM229A	NM_001136002.1	human	genbank	58_37c	-1	validated	in_frame_del	c.601_596	p.QQ199in_frame_del	0.000:0.000:0.001:0.388:0.445:0.475	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579312	7579312	+	Silent	SNP	C	C	G	rs55863639	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	17	7579312	7579312	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	silent	c.375	p.T125	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPO	7173	genome.wustl.edu	37	2	1426879	1426879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	1426879	1426879	G	A	SNP	TPO	NM_000547.5	human	genbank	58_37c	+1	reviewed	missense	c.157	p.A53T	0.006	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMSmart_SM00179,HMMPfam_An_peroxidase,HMMSmart_SM00181,superfamily_Heme-dependent peroxidases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,PatternScan_PEROXIDASE_1,superfamily_EGF/Laminin	-	no_errors
TRPC6	7225	genome.wustl.edu	37	11	101374902	101374902	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	11	101374902	101374902	C	T	SNP	TRPC6	NM_004621.5	human	genbank	58_37c	-1	reviewed	silent	c.798	p.S266	0.992	HMMPfam_TRP_2	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
TRPS1	7227	genome.wustl.edu	37	8	116430602	116430602	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	8	116430602	116430602	C	G	SNP	TRPS1	NM_014112.2	human	genbank	58_37c	-1	reviewed	missense	c.2779	p.G927R	1.000	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57716	-	no_errors
TSC22D3	1831	genome.wustl.edu	37	X	107018552	107018552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	X	107018552	107018552	C	G	SNP	TSC22D3	NM_198057.2	human	genbank	58_37c	-1	reviewed	missense	c.98	p.S33T	0.140	NULL	HMMPfam_TSC22,PatternScan_TSC22	-	no_errors
TTC29	83894	genome.wustl.edu	37	4	147741361	147741361	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	147741361	147741361	T	A	SNP	TTC29	NM_031956.2	human	genbank	58_37c	-1	validated	missense	c.1017	p.K339N	0.624	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179498292	179498292	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	2	179498292	179498292	T	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.35090	p.D11697V	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
WDFY3	23001	genome.wustl.edu	37	4	85748077	85748077	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	4	85748077	85748077	C	G	SNP	WDFY3	NM_014991.4	human	genbank	58_37c	-1	reviewed	silent	c.1014	p.L338	1.000	superfamily_ARM repeat	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,superfamily_FYVE/PHD zinc finger,superfamily_Cyclin-like,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
WNK1	65125	genome.wustl.edu	37	12	862832	862832	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-11A-12D-A10Y-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	6c61b0f7-35a3-4eb2-9a94-0d3103354970	12	862832	862832	C	G	SNP	WNK1	NM_018979.3	human	genbank	58_37c	+1	reviewed	missense	c.101	p.S34C	0.981	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
ZNF384	171017	genome.wustl.edu	37	12	6788134	6788134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	12	6788134	6788134	C	T	SNP	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	silent	c.282	p.P94	0.886	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF780B	163131	genome.wustl.edu	37	19	40541342	40541342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01A-11D-A10Y-09	TCGA-BH-A0BW-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	07b5141f-ac79-439b-883b-b0183bbe7ff5	4fe9e340-5314-4633-befe-c09aad28d7bf	19	40541342	40541342	C	T	SNP	ZNF780B	NM_001005851.2	human	genbank	58_37c	-1	validated	missense	c.1424	p.C475Y	0.931	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
