Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BACH1	571	genome.wustl.edu	37	21	30699316	30699316	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	21	30699316	30699316	C	T	SNP	BACH1	NM_001186.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1171	p.R391*	0.901	NULL	HMMSmart_SM00225,HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,superfamily_POZ domain,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
CHST11	50515	genome.wustl.edu	37	12	105150939	105150939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	12	105150939	105150939	C	T	SNP	CHST11	NM_018413.5	human	genbank	58_37c	+1	validated	silent	c.417	p.T139	0.051	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
CROCCL1	84809	genome.wustl.edu	37	1	16954981	16954981	+	RNA	SNP	C	C	A	rs10157498	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	16954981	16954981	C	A	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.724	-	-	-	pseudogene
DOCK2	1794	genome.wustl.edu	37	5	169127104	169127104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	169127104	169127104	G	A	SNP	DOCK2	NM_004946.2	human	genbank	58_37c	+1	validated	missense	c.1219	p.V407M	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,superfamily_Cytochrome c,HMMPfam_SH3_2	-	no_errors
ENSG00000235531	0	genome.wustl.edu	37	8	72965200	72965201	+	RNA	INS	-	-	TG	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	8	72965200	72965201	-	TG	INS	ENSG00000235531	ENST00000457356	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.008:0.162	-	-	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941688	21941688	+	RNA	SNP	G	G	A	rs4984119	byCluster;byFrequency;by2Hit2Allele	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	21941688	21941688	G	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENTHD1	150350	genome.wustl.edu	37	22	40161426	40161426	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	22	40161426	40161426	C	A	SNP	ENTHD1	NM_152512.3	human	genbank	58_37c	-1	provisional	nonsense	c.1021	p.E341*	0.990	NULL	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273	-	no_errors
FCGBP	8857	genome.wustl.edu	37	19	40408747	40408747	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	40408747	40408747	C	T	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	silent	c.4092	p.L1364	0.827	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
FNDC3B	64778	genome.wustl.edu	37	3	171851264	171851264	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	3	171851264	171851264	A	G	SNP	FNDC3B	NM_001135095.1	human	genbank	58_37c	+1	validated	missense	c.115	p.I39V	1.000	NULL	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
FOXD3	27022	genome.wustl.edu	37	1	63789206	63789206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	63789206	63789206	G	A	SNP	FOXD3	NM_012183.2	human	genbank	58_37c	+1	reviewed	silent	c.477	p.Q159	1.000	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785	-	no_errors
ITGA2	3673	genome.wustl.edu	37	5	52356790	52356790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	52356790	52356790	C	T	SNP	ITGA2	NM_002203.3	human	genbank	58_37c	+1	reviewed	missense	c.1372	p.R458W	0.995	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
KCNJ12	3768	genome.wustl.edu	37	17	21319230	21319230	+	Missense_Mutation	SNP	G	G	C	rs1657742	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	17	21319230	21319230	G	C	SNP	KCNJ12	NM_021012.4	human	genbank	58_37c	+1	validated	missense	c.576	p.Q192H	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
KPRP	448834	genome.wustl.edu	37	1	152732639	152732639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	152732639	152732639	G	A	SNP	KPRP	NM_001025231.1	human	genbank	58_37c	+1	provisional	missense	c.575	p.G192D	0.000	NULL	NULL	-	no_errors
LINGO1	84894	genome.wustl.edu	37	15	77907821	77907821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	77907821	77907821	C	T	SNP	LINGO1	NM_032808.5	human	genbank	58_37c	-1	validated	missense	c.428	p.S143N	1.000	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
NDN	4692	genome.wustl.edu	37	15	23931940	23931940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	23931940	23931940	C	T	SNP	NDN	NM_002487.2	human	genbank	58_37c	-1	reviewed	missense	c.425	p.R142H	0.982	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
PLEC	0	genome.wustl.edu	37	8	145001190	145001190	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	8	145001190	145001190	G	A	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	silent	c.4311	p.A1437	0.996	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
POLD2	5425	genome.wustl.edu	37	7	44156512	44156512	+	Silent	SNP	G	G	A	rs144701499	byFrequency	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	7	44156512	44156512	G	A	SNP	POLD2	NM_001127218.1	human	genbank	58_37c	-1	validated	silent	c.684	p.D228	0.137	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors
POLR2J4	84820	genome.wustl.edu	37	7	44056086	44056086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	7	44056086	44056086	G	A	SNP	POLR2J4	NR_003655.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.997	-	-	-	pseudogene
RAI14	26064	genome.wustl.edu	37	5	34812309	34812309	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	34812309	34812309	A	C	SNP	RAI14	NM_001145525.1	human	genbank	58_37c	+1	validated	missense	c.770	p.K257T	1.000	superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
SMCHD1	23347	genome.wustl.edu	37	18	2747542	2747542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	18	2747542	2747542	G	T	SNP	SMCHD1	NM_015295.2	human	genbank	58_37c	+1	validated	missense	c.3824	p.R1275I	1.000	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors
TMC4	147798	genome.wustl.edu	37	19	54676772	54676772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	54676772	54676772	G	A	SNP	TMC4	NM_001145303.1	human	genbank	58_37c	-1	validated	missense	c.41	p.S14F	0.291	NULL	HMMPfam_TMC	-	no_errors
ZBTB43	23099	genome.wustl.edu	37	9	129595094	129595094	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	9	129595094	129595094	T	C	SNP	ZBTB43	NM_001135776.1	human	genbank	58_37c	+1	validated	silent	c.306	p.S102	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
