Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PRAMEF1	65121	broad.mit.edu	37	1	12853591	12853591	+	Missense_Mutation	SNP	C	A	A	rs149382773		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:12853591C>A	uc001auj.1	+	2	318	c.215C>A	c.(214-216)ACG>AAG	p.T72K		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	72											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGATGAAGACGCTTCATTTG	0.547													59	97					1.88935e-48	7.36347e-48	1	0
PRAMEF2	65122	broad.mit.edu	37	1	12919600	12919600	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:12919600G>C	uc001aum.1	+	3	427	c.340G>C	c.(340-342)GCC>CCC	p.A114P		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	114											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAATTTCTGGGCCAGATGGCC	0.557													149	238					0	0	0	0
OPRD1	4985	broad.mit.edu	37	1	29185538	29185538	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:29185538C>G	uc001brf.1	+	2	542	c.300C>G	c.(298-300)AGC>AGG	p.S100R		NM_000911	NP_000902	P41143	OPRD_HUMAN	opioid receptor, delta 1	100	Helical; Name=2; (Potential).				immune response|protein import into nucleus, translocation	integral to plasma membrane	delta-opioid receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000947)|all_lung(284;0.00131)|Renal(390;0.00758)|Breast(348;0.00765)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-07)|COAD - Colon adenocarcinoma(152;7.51e-06)|STAD - Stomach adenocarcinoma(196;0.00306)|BRCA - Breast invasive adenocarcinoma(304;0.0241)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)	Butorphanol(DB00611)|Codeine(DB00318)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Loperamide(DB00836)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pimozide(DB01100)|Propoxyphene(DB00647)	TGGCCACCAGCACGCTGCCTT	0.488													41	85					0	0	0	0
HMGB4	127540	broad.mit.edu	37	1	34329945	34329945	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:34329945C>A	uc001bxp.2	+	2	1896	c.153C>A	c.(151-153)TCC>TCA	p.S51S	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_5'UTR	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	51						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AATGGAGATCCATCTCAAAGC	0.403													48	84					1.61863e-15	5.36655e-15	1	0
ZSWIM5	57643	broad.mit.edu	37	1	45506091	45506091	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:45506091G>A	uc001cnd.2	-	7	1957	c.1729C>T	c.(1729-1731)CTG>TTG	p.L577L		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	577							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TAGATTTCCAGTTGCCGCTGC	0.502													46	46					0	0	0	0
C8A	731	broad.mit.edu	37	1	57349196	57349196	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:57349196G>T	uc001cyo.2	+	6	829	c.697G>T	c.(697-699)GCA>TCA	p.A233S		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	233	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						TTATGATAATGCAAATGACCT	0.423													14	45					0.000308642	0.000801924	1	0
DIRAS3	9077	broad.mit.edu	37	1	68512915	68512915	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:68512915G>A	uc001ded.2	-	2	361	c.66C>T	c.(64-66)GCC>GCT	p.A22A	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	22					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GGATAAGCAGGGCGGGCAGAA	0.587													28	38					0	0	0	0
PTGER3	5733	broad.mit.edu	37	1	71478100	71478100	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:71478100T>C	uc001dfg.1	-	2	1196	c.965A>G	c.(964-966)CAG>CGG	p.Q322R	PTGER3_uc001dfh.1_RNA|PTGER3_uc001dfi.1_RNA|PTGER3_uc001dfj.1_RNA|PTGER3_uc001dfk.1_Missense_Mutation_p.Q322R|PTGER3_uc001dfl.1_Missense_Mutation_p.Q322R|PTGER3_uc009wbm.1_Missense_Mutation_p.Q322R|PTGER3_uc001dfm.1_RNA|PTGER3_uc001dfn.2_Missense_Mutation_p.Q322R|PTGER3_uc009wbn.1_Missense_Mutation_p.Q322R|PTGER3_uc009wbo.2_Missense_Mutation_p.Q322R|PTGER3_uc001dfo.2_Missense_Mutation_p.Q322R|PTGER3_uc001dfp.1_Missense_Mutation_p.Q322R|PTGER3_uc001dfq.2_Missense_Mutation_p.Q322R	NM_198714	NP_942007	P43115	PE2R3_HUMAN	prostaglandin E receptor 3, subtype EP3 isoform	322	Extracellular (Potential).				cell death|positive regulation of fever generation|transcription, DNA-dependent	integral to plasma membrane|nuclear envelope	ligand-dependent nuclear receptor activity|prostaglandin E receptor activity			pancreas(1)|lung(1)|skin(1)	3					Bimatoprost(DB00905)	GCATTCTTTCTGCTTCTCCGT	0.398													26	33					0	0	0	0
ELTD1	64123	broad.mit.edu	37	1	79403499	79403499	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:79403499C>A	uc001diq.3	-	6	909	c.753G>T	c.(751-753)ACG>ACT	p.T251T		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	251	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TACCTATATCCGTTGAATTTG	0.383													34	75					2.20474e-14	7.10952e-14	1	0
PRKACB	5567	broad.mit.edu	37	1	84668432	84668432	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:84668432C>T	uc001djj.2	+	8	973	c.709C>T	c.(709-711)CCC>TCC	p.P237S	PRKACB_uc001djl.2_Missense_Mutation_p.P284S|PRKACB_uc010ort.1_Missense_Mutation_p.P244S|PRKACB_uc001djn.2_Missense_Mutation_p.P241S|PRKACB_uc010oru.1_Missense_Mutation_p.P225S|PRKACB_uc001djp.2_Missense_Mutation_p.P243S|PRKACB_uc001djq.2_Missense_Mutation_p.P207S|PRKACB_uc010orv.1_Missense_Mutation_p.P224S|PRKACB_uc001dji.2_Missense_Mutation_p.P237S|PRKACB_uc001djk.2_Missense_Mutation_p.P284S|PRKACB_uc009wcf.1_Missense_Mutation_p.P243S	NM_002731	NP_002722	P22694	KAPCB_HUMAN	cAMP-dependent protein kinase catalytic subunit	237	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|regulation of insulin secretion|synaptic transmission|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|magnesium ion binding|protein binding			lung(2)|ovary(1)	3				all cancers(265;0.00536)|Epithelial(280;0.0161)|OV - Ovarian serous cystadenocarcinoma(397;0.141)		AGCTGGCTATCCCCCATTCTT	0.373													39	52					0	0	0	0
ABCA4	24	broad.mit.edu	37	1	94485286	94485286	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:94485286G>A	uc001dqh.2	-	36	5152	c.5048C>T	c.(5047-5049)GCC>GTC	p.A1683V	ABCA4_uc009wdp.1_5'Flank	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1683	Extracellular.		Missing (in STGD1; highly reduced ATP- binding capacity).		phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CACGCAGATGGCAACCACAGC	0.383													7	21					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103440441	103440441	+	Splice_Site	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:103440441T>A	uc001dul.2	-	36	3073	c.2755_splice	c.e36-1	p.G919_splice	COL11A1_uc001duk.2_Splice_Site_p.G115_splice|COL11A1_uc001dum.2_Splice_Site_p.G931_splice|COL11A1_uc001dun.2_Splice_Site_p.G880_splice|COL11A1_uc009weh.2_Splice_Site_p.G803_splice	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A						collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTGAGGACCCTGGAAATAAAA	0.388													23	28					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103444277	103444277	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:103444277G>T	uc001dul.2	-	35	3059	c.2741C>A	c.(2740-2742)CCT>CAT	p.P914H	COL11A1_uc001duk.2_Missense_Mutation_p.P110H|COL11A1_uc001dum.2_Missense_Mutation_p.P926H|COL11A1_uc001dun.2_Missense_Mutation_p.P875H|COL11A1_uc009weh.2_Missense_Mutation_p.P798H	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	914	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTCACCTGGAGGGCCAGGAGG	0.378													55	99					8.4772e-36	3.22902e-35	1	0
COL11A1	1301	broad.mit.edu	37	1	103461595	103461595	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:103461595G>A	uc001dul.2	-	27	2563	c.2245C>T	c.(2245-2247)CCC>TCC	p.P749S	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.P761S|COL11A1_uc001dun.2_Missense_Mutation_p.P710S|COL11A1_uc009weh.2_Missense_Mutation_p.P633S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	749	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGACCAGGGGGACCCTGAAAT	0.363													28	46					0	0	0	0
AMY2A	279	broad.mit.edu	37	1	104160135	104160135	+	Missense_Mutation	SNP	C	T	T	rs145483775	byFrequency	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:104160135C>T	uc001dut.2	+	1	137	c.73C>T	c.(73-75)CGG>TGG	p.R25W	AMY2A_uc010ouq.1_Missense_Mutation_p.R25W	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	25					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	ACAACAAGGACGGACATCTAT	0.443													64	111					0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216927	111216927	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:111216927T>C	uc001dzv.1	-	1	729	c.505A>G	c.(505-507)ATC>GTC	p.I169V		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	169						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCCGGCGGATGCGGCCCCCG	0.632													48	68					0	0	0	0
LOC647121	647121	broad.mit.edu	37	1	121304132	121304132	+	5'Flank	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:121304132C>G	uc009wht.1	+						LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						GGACCTGGTACAGTAGTAATG	0.313													11	39					0	0	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144855862	144855862	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:144855862G>C	uc001elw.3	-	41	6982	c.6691C>G	c.(6691-6693)CAT>GAT	p.H2231D	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H2125D|PDE4DIP_uc001elv.3_Missense_Mutation_p.H1238D	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2231					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CGAAGCTCATGAATACCTTTG	0.567			T	PDGFRB	MPD								4	52					0	0	0	0
LOC728989	728989	broad.mit.edu	37	1	146494617	146494617	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:146494617G>C	uc001epd.2	-	4	456	c.382C>G	c.(382-384)CAT>GAT	p.H128D		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						CGAAGCTCATGAATGCCTTTG	0.572													6	55					0	0	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916498	149916498	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:149916498C>T	uc001etn.2	-	12	2146	c.1790G>A	c.(1789-1791)AGC>AAC	p.S597N		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	597					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CCTCAGAATGCTCAGGCTCTG	0.557													21	131					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152282723	152282723	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:152282723C>T	uc001ezu.1	-	3	4675	c.4639G>A	c.(4639-4641)GAG>AAG	p.E1547K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1547	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTGTTCCTCATTTCTTGTT	0.587									Ichthyosis				168	237					0	0	0	0
LCE2B	26239	broad.mit.edu	37	1	152659536	152659536	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:152659536C>T	uc001fai.2	+	2	271	c.217C>T	c.(217-219)CTG>TTG	p.L73L		NM_014357	NP_055172	O14633	LCE2B_HUMAN	late cornified envelope 2B	73	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCTGCTGCCTGAGCCACCA	0.662													102	119					0	0	0	0
FCRL3	115352	broad.mit.edu	37	1	157665128	157665128	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:157665128T>C	uc001frb.2	-	8	1694	c.1402A>G	c.(1402-1404)AGG>GGG	p.R468G	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.R468G|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.R194G|FCRL3_uc001frc.1_Missense_Mutation_p.R468G	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	468	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CCTGTGACCCTGAGACTCACT	0.488													4	194					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158595968	158595968	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:158595968G>T	uc001fst.1	-	42	6077	c.5878C>A	c.(5878-5880)CTT>ATT	p.L1960I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1960	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AAGTCACCAAGGTCTGCACCA	0.418													16	29					3.57192e-18	1.20463e-17	1	0
SPTA1	6708	broad.mit.edu	37	1	158655028	158655028	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:158655028C>A	uc001fst.1	-	2	333	c.134G>T	c.(133-135)AGG>ATG	p.R45M		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	45	Spectrin 1.		R -> S (in EL2; Clichy).|R -> T (in EL2; Anastasia).		actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					cttctgaccccTCTCAGCGAC	0.323													42	53					3.43241e-23	1.22053e-22	1	0
OR6K2	81448	broad.mit.edu	37	1	158669657	158669657	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:158669657G>A	uc001fsu.1	-	1	786	c.786C>T	c.(784-786)CGC>CGT	p.R262R		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TGGCAGAGAAGCGTAGGTACA	0.478													16	32					0	0	0	0
ATP1A2	477	broad.mit.edu	37	1	160097392	160097392	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:160097392C>T	uc001fvc.2	+	8	931	c.799C>T	c.(799-801)CGC>TGC	p.R267C	ATP1A2_uc001fvb.2_Missense_Mutation_p.R267C|ATP1A2_uc010piz.1_Missense_Mutation_p.R112C|ATP1A2_uc001fvd.2_Missense_Mutation_p.R3C|ATP1A2_uc009wtg.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	267	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GGTGATGGGCCGCATAGCTAC	0.592													31	49					0	0	0	0
ILDR2	387597	broad.mit.edu	37	1	166927159	166927159	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:166927159G>T	uc001gdx.1	-	2	282	c.226C>A	c.(226-228)CGG>AGG	p.R76R		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	76	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						GATTGGGCCCGGGTAGAGGAC	0.532													39	71					7.05121e-23	2.49228e-22	1	0
SELE	6401	broad.mit.edu	37	1	169699747	169699747	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:169699747T>C	uc001ggm.3	-	5	698	c.541A>G	c.(541-543)ACA>GCA	p.T181A	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	181	Sushi 1.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCCAGGGCTGTACAGTTCACA	0.433													22	29					0	0	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738746	176738746	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:176738746G>A	uc001gkz.2	+	16	5491	c.4327G>A	c.(4327-4329)GAA>AAA	p.E1443K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1443	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTTCTAGAAGGAAATTCTGCT	0.453													13	39					0	0	0	0
RNASEL	6041	broad.mit.edu	37	1	182551297	182551297	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:182551297G>T	uc001gpj.1	-	3	1830	c.1663C>A	c.(1663-1665)CCA>ACA	p.P555T	RNASEL_uc009wxz.1_Missense_Mutation_p.P555T|RNASEL_uc001gpk.2_Missense_Mutation_p.P555T|RNASEL_uc009wya.1_3'UTR	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	555	Protein kinase.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						tcctcatctggagaaagttga	0.408									Hereditary_Prostate_Cancer				47	110					4.66543e-40	1.79451e-39	1	0
INTS7	25896	broad.mit.edu	37	1	212180752	212180752	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:212180752G>A	uc001hiw.1	-	6	701	c.596C>T	c.(595-597)CCC>CTC	p.P199L	INTS7_uc009xdb.1_Missense_Mutation_p.P199L|INTS7_uc001hix.1_Missense_Mutation_p.P75L|INTS7_uc001hiy.1_Missense_Mutation_p.P199L|INTS7_uc010pta.1_Missense_Mutation_p.P150L	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	199					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		CTGTAGAATGGGTATCAATTT	0.403													6	26					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216040469	216040469	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:216040469C>G	uc001hku.1	-	44	9112	c.8725G>C	c.(8725-8727)GGT>CGT	p.G2909R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2909	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGTGTAAAACCCACACTGTTG	0.398										HNSCC(13;0.011)			20	40					0	0	0	0
TTC13	79573	broad.mit.edu	37	1	231047215	231047215	+	Splice_Site	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:231047215C>T	uc001huf.3	-	20	2340	c.2309_splice	c.e20+1	p.S770_splice	TTC13_uc009xfi.2_Splice_Site_p.S717_splice|TTC13_uc009xfj.2_Splice_Site|TTC13_uc001hug.3_Splice_Site_p.S716_splice|TTC13_uc009xfk.1_Splice_Site_p.S659_splice	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a								binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		ATATTACTTACCTGGATCCTC	0.313													8	14					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237942010	237942010	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:237942010G>T	uc001hyl.1	+	88	11940	c.11820G>T	c.(11818-11820)CTG>CTT	p.L3940L	RYR2_uc010pya.1_Silent_p.L355L	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3940	Helical; Name=M1; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACAGCAGGCTGTGGGATGCTG	0.443													27	43					3.57733e-08	1.02947e-07	1	0
VN1R5	317705	broad.mit.edu	37	1	247419676	247419676	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:247419676G>T	uc010pyu.1	+	2	303	c.303G>T	c.(301-303)TTG>TTT	p.L101F		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	101	Helical; Name=3; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			AGGCAATATTGGTGTCCTTAG	0.423													73	86					9.07738e-34	3.4354e-33	1	0
NLRP3	114548	broad.mit.edu	37	1	247599293	247599293	+	Silent	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:247599293A>G	uc001icr.2	+	8	2658	c.2520A>G	c.(2518-2520)ACA>ACG	p.T840T	NLRP3_uc001ics.2_Intron|NLRP3_uc001icu.2_Silent_p.T840T|NLRP3_uc001icw.2_Silent_p.T783T|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Silent_p.T818T	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	840	LRR 4.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GCTGCCTCACATCAGCATGTT	0.537													22	48					0	0	0	0
OR14C36	127066	broad.mit.edu	37	1	248512790	248512790	+	Silent	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:248512790C>G	uc010pzl.1	+	1	714	c.714C>G	c.(712-714)ACC>ACG	p.T238T		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CCTTTTCCACCTGCATCCCTC	0.522													34	48					0	0	0	0
TUBB8	347688	broad.mit.edu	37	10	93792	93792	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:93792C>A	uc001ifi.2	-	4	540	c.540G>T	c.(538-540)GTG>GTT	p.V180V	TUBB8_uc009xhe.2_Silent_p.V143V|TUBB8_uc010pzs.1_Silent_p.V108V	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	180					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TGTAGGGCTCCACCACGGTGT	0.517													21	71					1.06801e-11	3.33435e-11	1	0
FAM171A1	221061	broad.mit.edu	37	10	15255068	15255068	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:15255068G>A	uc001iob.2	-	8	2526	c.2519C>T	c.(2518-2520)GCG>GTG	p.A840V		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	840	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GGGGGCATCCGCAGTCCGTCT	0.617													39	83					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	16994277	16994277	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:16994277G>C	uc001ioo.2	-	33	5019	c.4967C>G	c.(4966-4968)CCA>CGA	p.P1656R		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1656	CUB 11.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTACTTACATGGAGGTTGCGC	0.438													21	36					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	16996484	16996484	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:16996484C>A	uc001ioo.2	-	32	4811	c.4759G>T	c.(4759-4761)GCT>TCT	p.A1587S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1587	CUB 10.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATGGGGTTAGCCAGCTGCTCC	0.532													29	43					4.59853e-10	1.39857e-09	1	0
CUBN	8029	broad.mit.edu	37	10	17165686	17165686	+	Silent	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:17165686A>T	uc001ioo.2	-	5	442	c.390T>A	c.(388-390)ACT>ACA	p.T130T		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	130					cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTTTGTCAACAGTCTGAAACA	0.443													6	5					0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25886754	25886754	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:25886754G>T	uc001isj.2	+	11	2259	c.2199G>T	c.(2197-2199)ATG>ATT	p.M733I	GPR158_uc001isk.2_Missense_Mutation_p.M108I	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	733	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GAAAGAAGATGATCACAAACA	0.448													34	68					3.66082e-28	1.34649e-27	1	0
ZNF37A	7587	broad.mit.edu	37	10	38407754	38407754	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:38407754T>G	uc001izk.2	+	8	2494	c.1675T>G	c.(1675-1677)TAC>GAC	p.Y559D	ZNF37A_uc001izl.2_Missense_Mutation_p.Y559D|ZNF37A_uc001izm.2_Missense_Mutation_p.Y559D	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	559						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						CGAGGGAAATTACTCTGGGTG	0.353													3	7					0	0	0	0
RBP3	5949	broad.mit.edu	37	10	48388466	48388466	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:48388466C>A	uc001jez.2	-	1	2526	c.2412G>T	c.(2410-2412)GAG>GAT	p.E804D		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	804	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCTGGCGGGGCTCTGCCTCAA	0.627													8	8					0.00307968	0.0078289	1	0
JMJD1C	221037	broad.mit.edu	37	10	64944479	64944479	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:64944479T>A	uc001jmn.2	-	21	7150	c.6850A>T	c.(6850-6852)AGT>TGT	p.S2284C	JMJD1C_uc001jml.2_Missense_Mutation_p.S2047C|JMJD1C_uc001jmm.2_Missense_Mutation_p.S1996C|JMJD1C_uc010qiq.1_Missense_Mutation_p.S2102C|JMJD1C_uc009xpi.2_Missense_Mutation_p.S2102C|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmo.2_Missense_Mutation_p.S191C	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	2284	JmjC.				blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AATGGCAGACTTTTTAAAAGA	0.333													16	26					0	0	0	0
C10orf35	219738	broad.mit.edu	37	10	71392595	71392595	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:71392595G>T	uc001jpq.3	+	4	316	c.146G>T	c.(145-147)CGC>CTC	p.R49L		NM_145306	NP_660349	Q96D05	CJ035_HUMAN	hypothetical protein LOC219738	49						integral to membrane				ovary(1)|skin(1)	2						CCTGGCCCCCGCCAGCAGCAG	0.602													17	19					1.99824e-07	5.62661e-07	1	0
PCGF5	84333	broad.mit.edu	37	10	93011162	93011162	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:93011162C>G	uc001khh.2	+	6	686	c.439C>G	c.(439-441)CGA>GGA	p.R147G	PCGF5_uc010qnk.1_Missense_Mutation_p.R147G|PCGF5_uc001khi.2_Missense_Mutation_p.R147G	NM_032373	NP_115749	Q86SE9	PCGF5_HUMAN	polycomb group ring finger 5	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|PcG protein complex	zinc ion binding			lung(1)	1						AGATTGTTTACGAAATAATGG	0.343													16	30					0	0	0	0
HPSE2	60495	broad.mit.edu	37	10	100401623	100401623	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:100401623T>A	uc001kpn.1	-	7	1139	c.1079A>T	c.(1078-1080)CAG>CTG	p.Q360L	HPSE2_uc009xwc.1_Missense_Mutation_p.Q350L|HPSE2_uc001kpo.1_Missense_Mutation_p.Q292L|HPSE2_uc009xwd.1_Missense_Mutation_p.Q238L	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	360					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		TTTCCTAATCTGGTCAGAGAG	0.428													69	107					0	0	0	0
HPSE2	60495	broad.mit.edu	37	10	100481443	100481443	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:100481443C>A	uc001kpn.1	-	5	987	c.927G>T	c.(925-927)CCG>CCT	p.P309P	HPSE2_uc009xwc.1_Silent_p.P299P|HPSE2_uc001kpo.1_Silent_p.P241P|HPSE2_uc009xwd.1_Silent_p.P187P	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	309					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		CATTCTTCCTCGGCCGCCCAA	0.438													14	31					0.000151284	0.000396574	1	0
SORCS3	22986	broad.mit.edu	37	10	107016579	107016579	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:107016579C>T	uc001kyi.1	+	25	3567	c.3340C>T	c.(3340-3342)CCA>TCA	p.P1114S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1114	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTTCCAAGCTCCATTGGTGGA	0.458													16	10					0	0	0	0
SORCS1	114815	broad.mit.edu	37	10	108923992	108923992	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:108923992G>T	uc001kym.2	-	1	301	c.293C>A	c.(292-294)TCC>TAC	p.S98Y	SORCS1_uc001kyl.2_Missense_Mutation_p.S98Y|SORCS1_uc009xxs.2_Missense_Mutation_p.S98Y|SORCS1_uc001kyn.1_Missense_Mutation_p.S98Y|SORCS1_uc001kyo.2_Missense_Mutation_p.S98Y	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	98	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		AACCGCCATGGATGCCCCAGT	0.726													10	18					1.76689e-08	5.10967e-08	1	0
EMX2	2018	broad.mit.edu	37	10	119305325	119305325	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:119305325C>G	uc001ldh.3	+	2	1412	c.589C>G	c.(589-591)CAG>GAG	p.Q197E	EMX2OS_uc001ldg.2_5'Flank|EMX2_uc001ldi.3_Intron	NM_004098	NP_004089	Q04743	EMX2_HUMAN	empty spiracles homeobox 2 isoform 1	197	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.109)|Lung NSC(174;0.179)|all_lung(145;0.22)		all cancers(201;0.0133)		CACGGAAACTCAGGTGACTGC	0.632													5	17					0	0	0	0
MKI67	4288	broad.mit.edu	37	10	129913444	129913444	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:129913444C>T	uc001lke.2	-	7	1423	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	410					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GTGGCAGAGTCAGCTGCATCT	0.438													32	58					0	0	0	0
MGMT	4255	broad.mit.edu	37	10	131557583	131557583	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:131557583G>C	uc001lkh.2	+	4	511	c.485G>C	c.(484-486)GGA>GCA	p.G162A		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	131										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		CGAGCAGTGGGAGGAGCAATG	0.562								Direct_reversal_of_damage					23	40					0	0	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135106020	135106020	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:135106020G>A	uc001lmg.1	-	8	1554	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I	TUBGCP2_uc001lmf.1_5'Flank|TUBGCP2_uc010qvc.1_Silent_p.I427I|TUBGCP2_uc009ybk.1_Silent_p.I399I|TUBGCP2_uc010qvd.1_Silent_p.I269I|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	399					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GGTCGTGGATGATGCCCCTGT	0.438													8	19					0	0	0	0
FRG2B	441581	broad.mit.edu	37	10	135440184	135440184	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:135440184C>A	uc010qvg.1	-	1	116	c.63G>T	c.(61-63)CAG>CAT	p.Q21H		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	21						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GGAAAGGGGGCTGGTCAGTGG	0.507													15	170					5.03518e-11	1.55958e-10	1	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629194	1629195	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:1629194_1629195CA>AG	uc001ltw.1	-	1	499_500	c.421_422TG>CT	c.(421-423)TGT>CTT	p.C141L		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	141	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GGATGACCCACAGCCTGAGGAG	0.53													97	150					0	0	0	0
TRIM68	55128	broad.mit.edu	37	11	4621792	4621792	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:4621792T>C	uc001lzf.1	-	7	1410	c.1172A>G	c.(1171-1173)TAT>TGT	p.Y391C	TRIM68_uc001lzg.1_Missense_Mutation_p.Y168C|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	391	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		CCAGAATCCATAGTGGGGGGA	0.572													18	35					0	0	0	0
TRIM22	10346	broad.mit.edu	37	11	5730671	5730671	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:5730671G>A	uc001mbr.2	+	8	1567	c.1290G>A	c.(1288-1290)AAG>AAA	p.K430K	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Silent_p.K426K|TRIM22_uc010qzm.1_Silent_p.K258K|TRIM22_uc009yeu.2_Silent_p.K241K|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	430	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		CTGATCCCAAGGTTTTGACTC	0.423													44	80					0	0	0	0
OR52E4	390081	broad.mit.edu	37	11	5905604	5905604	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:5905604T>A	uc010qzs.1	+	1	82	c.82T>A	c.(82-84)TGG>AGG	p.W28R	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTACATATCTGGATTTCTTT	0.443													80	117					0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7068026	7068026	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:7068026G>T	uc001mfb.1	+	5	2409	c.2086G>T	c.(2086-2088)GAA>TAA	p.E696*		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	696					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CCTGCATCATGAACTAAGGCA	0.373													36	59					1.36161e-19	4.63185e-19	1	0
INSC	387755	broad.mit.edu	37	11	15260557	15260557	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:15260557G>C	uc001mly.2	+	11	1517	c.1471G>C	c.(1471-1473)GCA>CCA	p.A491P	INSC_uc001mlz.2_Missense_Mutation_p.A444P|INSC_uc001mma.2_Missense_Mutation_p.A444P|INSC_uc010rcs.1_Missense_Mutation_p.A479P|INSC_uc001mmb.2_Missense_Mutation_p.A444P|INSC_uc001mmc.2_Missense_Mutation_p.A402P	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	491					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						GCAGAAAGCTGCAGTGACCCT	0.607													14	27					0	0	0	0
LOC494141	494141	broad.mit.edu	37	11	18231832	18231832	+	RNA	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:18231832T>A	uc009yhh.2	+	2		c.856T>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AGCATCTGCCTACCGCGACGA	0.433													26	29					0	0	0	0
DBX1	120237	broad.mit.edu	37	11	20178181	20178181	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:20178181G>A	uc001mpw.1	-	4	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCTCCGGGGGACGCACGGGG	0.627													24	43					0	0	0	0
Unknown	0	broad.mit.edu	37	11	30928266	30928266	+	RNA	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:30928266A>G	uc001mss.1	-	8		c.1028T>C			uc009yjk.1_Missense_Mutation_p.C757R|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GAGAGATAACAGTATCCCTAA	0.368													9	15					0	0	0	0
Unknown	0	broad.mit.edu	37	11	31086589	31086589	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:31086589G>T	uc009yjk.1	-	7	823	c.754C>A	c.(754-756)CAT>AAT	p.H252N	uc009yjl.1_Missense_Mutation_p.H180N|DCDC1_uc001msu.1_Missense_Mutation_p.H423N					RecName: Full=Doublecortin domain-containing protein 5;																		TTTCTGCCATGTTCCTGATGA	0.423													17	29					4.35082e-09	1.29316e-08	1	0
LRRC4C	57689	broad.mit.edu	37	11	40137513	40137513	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:40137513G>T	uc001mxa.1	-	2	2294	c.330C>A	c.(328-330)AAC>AAA	p.N110K	LRRC4C_uc001mxc.1_Missense_Mutation_p.N106K|LRRC4C_uc001mxd.1_Missense_Mutation_p.N106K|LRRC4C_uc001mxb.1_Missense_Mutation_p.N106K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	110	LRR 2.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TTCTGATATGGTTCCTACTCA	0.453													24	27					1.9806e-07	5.59032e-07	1	0
OR4A5	81318	broad.mit.edu	37	11	51411675	51411675	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:51411675T>A	uc001nhi.1	-	1	721	c.721A>T	c.(721-723)AGT>TGT	p.S241C		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACAACGGTACTGCCGGAGCTG	0.398													18	25					0	0	0	0
OR5L1	219437	broad.mit.edu	37	11	55579555	55579555	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:55579555T>A	uc001nhw.1	+	1	613	c.613T>A	c.(613-615)TTG>ATG	p.L205M		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GGTGGCCACTTTGAATGAGAG	0.463													48	101					0	0	0	0
OR8K5	219453	broad.mit.edu	37	11	55927296	55927296	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:55927296C>A	uc010rja.1	-	1	498	c.498G>T	c.(496-498)TTG>TTT	p.L166F		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				CACAGAAGGTCAATGTAAAAA	0.383													21	55					2.27731e-05	6.10567e-05	1	0
OR8K5	219453	broad.mit.edu	37	11	55927362	55927362	+	Silent	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:55927362C>G	uc010rja.1	-	1	432	c.432G>C	c.(430-432)CTG>CTC	p.L144L		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				GAATGCCCACCAGTACATGAC	0.403													32	71					0	0	0	0
OR8K3	219473	broad.mit.edu	37	11	56086244	56086244	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:56086244C>A	uc010rjf.1	+	1	462	c.462C>A	c.(460-462)TTC>TTA	p.F154L		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATTGCACATTCATTTCTCTTC	0.418													45	64					7.05121e-23	2.49228e-22	1	0
OR9G4	283189	broad.mit.edu	37	11	56511027	56511027	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:56511027C>A	uc010rjo.1	-	1	261	c.261G>T	c.(259-261)TGG>TGT	p.W87C		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	87	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CAGAGGTATACCAGAAATCCA	0.433													34	63					6.90743e-12	2.16801e-11	1	0
ZFP91	80829	broad.mit.edu	37	11	58384258	58384258	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:58384258G>A	uc001nmx.3	+	10	1340	c.1172G>A	c.(1171-1173)CGG>CAG	p.R391Q	ZFP91_uc001nmy.3_Missense_Mutation_p.R390Q|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	391	C2H2-type 3.				activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				GCAGTGCACCGGATGATTCAC	0.428													13	47					0	0	0	0
GLYAT	10249	broad.mit.edu	37	11	58491896	58491896	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:58491896G>A	uc001nnb.2	-	2	229	c.74C>T	c.(73-75)TCC>TTC	p.S25F	GLYAT_uc001nnc.2_Missense_Mutation_p.S25F	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	25					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	CACCTTTAAGGATGCTGGGAG	0.398													50	82					0	0	0	0
TCN1	6947	broad.mit.edu	37	11	59622199	59622199	+	Silent	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:59622199A>G	uc001noj.2	-	7	1145	c.1047T>C	c.(1045-1047)AAT>AAC	p.N349N		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	349					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCACAGTGACATTGGTGAAAT	0.403													36	59					0	0	0	0
MS4A14	84689	broad.mit.edu	37	11	60183525	60183525	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:60183525T>A	uc001npj.2	+	5	1649	c.1084T>A	c.(1084-1086)TCC>ACC	p.S362T	MS4A14_uc001npi.2_Missense_Mutation_p.S250T|MS4A14_uc001npn.2_Missense_Mutation_p.S100T|MS4A14_uc001npk.2_Missense_Mutation_p.S345T|MS4A14_uc001npl.2_Missense_Mutation_p.S100T|MS4A14_uc001npm.2_Missense_Mutation_p.S100T	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	362						integral to membrane	receptor activity			breast(1)	1						AGGcatactatcccaagacac	0.219													14	14					0	0	0	0
ASRGL1	80150	broad.mit.edu	37	11	62124564	62124564	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:62124564C>T	uc001nte.3	+	4	723	c.439C>T	c.(439-441)CGC>TGC	p.R147C	ASRGL1_uc001ntf.3_Missense_Mutation_p.R147C|ASRGL1_uc001ntg.3_Missense_Mutation_p.R19C|ASRGL1_uc001nth.1_RNA	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	147					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	AAACAAAAAGCGCCTGGAAAA	0.433													17	28					0	0	0	0
SF1	7536	broad.mit.edu	37	11	64536570	64536570	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:64536570G>T	uc001obb.1	-	8	1188	c.811C>A	c.(811-813)CGC>AGC	p.R271S	SF1_uc010rnm.1_5'UTR|SF1_uc010rnn.1_Missense_Mutation_p.R245S|SF1_uc001oaz.1_Missense_Mutation_p.R396S|SF1_uc001oba.1_Missense_Mutation_p.R271S|SF1_uc001obc.1_Missense_Mutation_p.R271S|SF1_uc001obd.1_Missense_Mutation_p.R271S|SF1_uc001obe.1_Missense_Mutation_p.R156S|SF1_uc010rno.1_Missense_Mutation_p.R156S	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	271					nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						GTAATGCTGCGGGTCTCTGAG	0.488													5	212					0.00198382	0.00507599	1	0
EFEMP2	30008	broad.mit.edu	37	11	65637634	65637634	+	Missense_Mutation	SNP	C	T	T	rs148940436		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:65637634C>T	uc001ofy.3	-	6	759	c.565G>A	c.(565-567)GAG>AAG	p.E189K	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.E189K	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	189	EGF-like 3; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		AAGCCCGGCTCGCACTGGCAG	0.667													22	31					0	0	0	0
RBM4	5936	broad.mit.edu	37	11	66407340	66407340	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:66407340G>A	uc009yrj.2	+	2	646	c.158G>A	c.(157-159)CGC>CAC	p.R53H	RBM4_uc009yrk.2_Intron|RBM4_uc001oiv.2_Missense_Mutation_p.R53H|RBM4_uc001oiw.1_Missense_Mutation_p.R53H|RBM4_uc001oix.1_Missense_Mutation_p.R53H|RBM4_uc010rpj.1_Missense_Mutation_p.R53H|RBM4_uc001oiy.1_Missense_Mutation_p.R53H|RBM4_uc001oiz.1_Missense_Mutation_p.R53H	NM_002896	NP_002887	Q9BWF3	RBM4_HUMAN	RNA binding motif protein 4	53	RRM 1.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|negative regulation of translation in response to stress|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|positive regulation of muscle cell differentiation|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of nucleocytoplasmic transport|RNA splicing|stress-activated MAPK cascade	nuclear speck|nucleolus|stress granule	miRNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|zinc ion binding			ovary(1)	1				Lung(977;0.0112)|LUSC - Lung squamous cell carcinoma(976;0.0266)		GATGCCATACGCAACCTGCAC	0.468													58	116					0	0	0	0
ANO1	55107	broad.mit.edu	37	11	70033950	70033950	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:70033950T>A	uc001opj.2	+	26	3106	c.2801T>A	c.(2800-2802)TTC>TAC	p.F934Y	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.F643Y|ANO1_uc010rql.1_Missense_Mutation_p.F108Y	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	934	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						GTGGAGCTGTTCATGCGGGAG	0.577													6	4					0	0	0	0
MYO7A	4647	broad.mit.edu	37	11	76870542	76870542	+	Silent	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:76870542G>C	uc001oyb.2	+	10	1325	c.1053G>C	c.(1051-1053)TCG>TCC	p.S351S	MYO7A_uc010rsl.1_Silent_p.S351S|MYO7A_uc010rsm.1_Silent_p.S340S|MYO7A_uc001oyc.2_Silent_p.S351S	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	351	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TCTCCCCATCGCTGGCCACAG	0.587													33	42					0	0	0	0
Unknown	0	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	A	A	rs145791878	by1000genomes	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:89774252G>A	uc010rua.1	+	7	1016	c.893G>A	c.(892-894)AGT>AAT	p.S298N		NM_020358	NP_065091			ring finger protein 18																		GAAGCCAACAGTGATATCTTT	0.323													4	45					0	0	0	0
SLC36A4	120103	broad.mit.edu	37	11	92895879	92895879	+	Missense_Mutation	SNP	C	A	A	rs76610702	byFrequency	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:92895879C>A	uc001pdn.2	-	9	1127	c.1030G>T	c.(1030-1032)GAT>TAT	p.D344Y	SLC36A4_uc001pdm.2_Missense_Mutation_p.D209Y	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	344					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TACCATACATCTTGGGGAAGA	0.303													21	23					2.4624e-09	7.39347e-09	1	0
KIAA1377	57562	broad.mit.edu	37	11	101832914	101832914	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:101832914G>T	uc001pgm.2	+	6	1418	c.1148G>T	c.(1147-1149)TGT>TTT	p.C383F	KIAA1377_uc001pgn.2_Missense_Mutation_p.C339F|KIAA1377_uc010run.1_Missense_Mutation_p.C184F|KIAA1377_uc009yxa.1_Missense_Mutation_p.C184F	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	383							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GATAAAAAATGTGAAAAGACC	0.398													15	29					0.000308642	0.000801924	1	0
GRIA4	2893	broad.mit.edu	37	11	105795455	105795455	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:105795455C>T	uc001pix.2	+	12	2253	c.1807C>T	c.(1807-1809)CTG>TTG	p.L603L	GRIA4_uc001piw.2_Silent_p.L603L	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	603	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CTGGTTTTCCCTGGGTGCTTT	0.463													25	29					0	0	0	0
ZW10	9183	broad.mit.edu	37	11	113614600	113614600	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:113614600T>C	uc001poe.2	-	10	1472	c.1435A>G	c.(1435-1437)ATC>GTC	p.I479V	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	479					cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		GACTCACTGATACGGCATGTG	0.413													30	56					0	0	0	0
ZBTB16	7704	broad.mit.edu	37	11	114027108	114027108	+	Silent	SNP	C	A	A	rs141621748		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:114027108C>A	uc001pop.2	+	3	1582	c.1318C>A	c.(1318-1320)CGG>AGG	p.R440R	ZBTB16_uc001poo.1_Silent_p.R440R|ZBTB16_uc001poq.2_Silent_p.R440R	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	440	C2H2-type 2.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		CTGCGGGAAGCGGTTCCTGGA	0.552													18	47					0.000958276	0.00246264	1	0
PCSK7	9159	broad.mit.edu	37	11	117093951	117093951	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:117093951A>C	uc001pqr.2	-	9	1329	c.1128T>G	c.(1126-1128)AGT>AGG	p.S376R		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	376	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		TGTCCCCACCACTGAAGGTGA	0.577			T	IGH@	MLCLS								42	57					0	0	0	0
TECTA	7007	broad.mit.edu	37	11	121032985	121032985	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:121032985G>T	uc010rzo.1	+	15	5178	c.5178G>T	c.(5176-5178)AAG>AAT	p.K1726N		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1726					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACAGCCACAAGAAGTTCCAGC	0.592													21	37					1.00905e-13	3.2361e-13	1	0
OR8B12	219858	broad.mit.edu	37	11	124413188	124413188	+	Silent	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:124413188G>C	uc010sam.1	-	1	363	c.363C>G	c.(361-363)CGC>CGG	p.R121R		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TGGCCACGTAGCGGTCATACG	0.507													23	49					0	0	0	0
KIRREL3	84623	broad.mit.edu	37	11	126343309	126343309	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:126343309C>T	uc001qea.2	-	5	847	c.486G>A	c.(484-486)GCG>GCA	p.A162A	KIRREL3_uc001qeb.2_Silent_p.A162A|KIRREL3_uc001qec.1_Silent_p.A162A	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	162	Ig-like C2-type 2.|Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		GAGGGTCCCCCGCACGCAGGC	0.647													6	7					0	0	0	0
ETS1	2113	broad.mit.edu	37	11	128360449	128360449	+	Silent	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:128360449T>A	uc010sbs.1	-	2	421	c.105A>T	c.(103-105)CCA>CCT	p.P35P	ETS1_uc001qej.2_Silent_p.P79P|ETS1_uc009zch.2_Intron|ETS1_uc009zcg.2_Silent_p.P35P	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	35					cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		GAGTTAATAGTGGGACATCTG	0.358													15	17					0	0	0	0
FLI1	2313	broad.mit.edu	37	11	128628193	128628193	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr11:128628193C>T	uc010sbu.1	+	2	543	c.202C>T	c.(202-204)CGG>TGG	p.R68W	FLI1_uc010sbt.1_5'UTR|FLI1_uc010sbv.1_Missense_Mutation_p.R35W|FLI1_uc009zci.2_5'UTR|FLI1_uc001qen.2_Missense_Mutation_p.R35W	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	68					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.R68W(1)	EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		CAACGTCAAGCGGGAGTATGA	0.587			T	EWSR1	Ewing sarcoma								8	17					0	0	0	0
PARP11	57097	broad.mit.edu	37	12	3939117	3939117	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:3939117G>T	uc001qmk.1	-	1	120	c.65C>A	c.(64-66)ACG>AAG	p.T22K	PARP11_uc001qml.2_Missense_Mutation_p.T29K|PARP11_uc009zef.2_RNA|PARP11_uc001qmm.2_5'UTR|PARP11_uc001qmn.2_5'UTR	NM_020367	NP_065100	Q9NR21	PAR11_HUMAN	poly (ADP-ribose) polymerase family, member 11	22	WWE.						NAD+ ADP-ribosyltransferase activity			ovary(1)|central_nervous_system(1)	2			all cancers(3;1.58e-07)|OV - Ovarian serous cystadenocarcinoma(31;0.00287)|GBM - Glioblastoma multiforme(3;0.0141)|COAD - Colon adenocarcinoma(12;0.0264)			GGTATCTGACGTGTCCATGTC	0.413													54	93					3.07002e-29	1.13988e-28	1	0
NTF3	4908	broad.mit.edu	37	12	5604005	5604005	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:5604005G>T	uc001qnl.3	+	1	708	c.625G>T	c.(625-627)GAT>TAT	p.D209Y	NTF3_uc001qnk.3_Missense_Mutation_p.D222Y	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	209					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CAGGGGTATTGATGATAAACA	0.488													99	46					2.31008e-40	8.94397e-40	1	0
TAS2R13	50838	broad.mit.edu	37	12	11061579	11061579	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:11061579A>G	uc001qzg.1	-	1	583	c.319T>C	c.(319-321)TAT>CAT	p.Y107H	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron	NM_023920	NP_076409	Q9NYV9	T2R13_HUMAN	taste receptor, type 2, member 13	107	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			breast(1)|skin(1)	2						TTGAGCAAATAAAAGATGCTG	0.368													77	33					0	0	0	0
PRB2	653247	broad.mit.edu	37	12	11546829	11546829	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:11546829G>T	uc010shk.1	-	3	218	c.183C>A	c.(181-183)CCC>CCA	p.P61P		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTCCTTGTGGGGGTGGTCCTT	0.587													12	687					0.00074312	0.0019181	1	0
KIAA1467	57613	broad.mit.edu	37	12	13224192	13224192	+	Silent	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:13224192T>A	uc001rbi.2	+	10	1409	c.1386T>A	c.(1384-1386)GGT>GGA	p.G462G	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	462						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TTGTGGATGGTGACTCTGGCT	0.478													90	247					0	0	0	0
ART4	420	broad.mit.edu	37	12	14996007	14996007	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:14996007G>T	uc001rcl.1	-	1	407	c.41C>A	c.(40-42)CCA>CAA	p.P14Q	ART4_uc009zid.1_RNA|ART4_uc009zie.1_RNA|ART4_uc001rcm.1_Missense_Mutation_p.P14Q	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	14					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						TACAGTAGTTGGGAGAAGAAT	0.507													74	51					2.10938e-32	7.9575e-32	1	0
PIK3C2G	5288	broad.mit.edu	37	12	18658284	18658284	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:18658284G>T	uc001rdt.2	+	23	3205	c.3089G>T	c.(3088-3090)GGA>GTA	p.G1030V	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G1071V|PIK3C2G_uc010sic.1_Missense_Mutation_p.G849V	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1030	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TTCATCCTGGGAGTATGTGAC	0.383													22	16					4.35082e-09	1.29316e-08	1	0
ITPR2	3709	broad.mit.edu	37	12	26580957	26580957	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:26580957C>A	uc001rhg.2	-	49	7251	c.6834G>T	c.(6832-6834)CTG>CTT	p.L2278L	ITPR2_uc009zjg.1_Silent_p.L429L	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2278	Helical; (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AGAAGAAAAACAGCATAGATG	0.383													18	66					4.35082e-09	1.29316e-08	1	0
ZNF641	121274	broad.mit.edu	37	12	48738456	48738456	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:48738456T>C	uc001rrn.1	-	5	653	c.488A>G	c.(487-489)GAA>GGA	p.E163G	ZNF641_uc001rro.1_Missense_Mutation_p.E149G|ZNF641_uc010sls.1_Missense_Mutation_p.E140G	NM_152320	NP_689533	Q96N77	ZN641_HUMAN	zinc finger protein 641	163	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TTCTCCTCCTTCTAGTTGAGA	0.438													68	13					0	0	0	0
ESPL1	9700	broad.mit.edu	37	12	53683319	53683319	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:53683319G>T	uc001sck.2	+	22	5145	c.5054G>T	c.(5053-5055)GGC>GTC	p.G1685V	ESPL1_uc001scj.2_Missense_Mutation_p.G1360V	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1685					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TTGGAATCTGGCCACTTCCCC	0.612													51	14					5.57489e-27	2.03778e-26	1	0
SLC16A7	9194	broad.mit.edu	37	12	60168919	60168919	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:60168919G>T	uc001sqs.2	+	5	1142	c.843G>T	c.(841-843)TCG>TCT	p.S281S	SLC16A7_uc001sqt.2_Silent_p.S281S|SLC16A7_uc001squ.2_Silent_p.S281S|SLC16A7_uc009zqi.2_Silent_p.S182S|SLC16A7_uc010ssi.1_Silent_p.S182S	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	281	Extracellular (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	ATGAGTACTCGGCAGCTTTTC	0.383													78	16					9.63364e-24	3.436e-23	1	0
SRGAP1	57522	broad.mit.edu	37	12	64472740	64472740	+	Silent	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:64472740T>C	uc010ssp.1	+	9	1223	c.1167T>C	c.(1165-1167)GAT>GAC	p.D389D	SRGAP1_uc001srt.2_Silent_p.D389D|SRGAP1_uc001srv.2_Silent_p.D349D	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	389	Potential.				axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		CGATACAAGATATGGTCACCA	0.378													39	12					0	0	0	0
TMTC3	160418	broad.mit.edu	37	12	88588735	88588735	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:88588735A>T	uc001tau.2	+	14	2274	c.2054A>T	c.(2053-2055)AAT>ATT	p.N685I		NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	686	TPR 7.					integral to membrane	binding			skin(1)	1						AAAAAGGACAATGAAGCAGAG	0.398													35	13					0	0	0	0
DTX1	1840	broad.mit.edu	37	12	113515335	113515335	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:113515335T>G	uc001tuk.1	+	2	702	c.366T>G	c.(364-366)GAT>GAG	p.D122E		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	122	WWE 2.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CGGCCTACGATATGGACATCT	0.622													8	56					0	0	0	0
MTUS2	23281	broad.mit.edu	37	13	29898764	29898764	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:29898764G>T	uc001usl.3	+	5	2909	c.2851G>T	c.(2851-2853)GCT>TCT	p.A951S		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	941	Localization to the growing distal tip of microtubules.|Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity	p.A951T(1)			0						AAAGAAAGATGCTCAGAAAGA	0.378													6	0					2.0095e-06	5.51324e-06	1	0
RB1	5925	broad.mit.edu	37	13	48881512	48881512	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:48881512G>A	uc001vcb.2	+	2	400	c.234G>A	c.(232-234)TGG>TGA	p.W78*	RB1_uc010acs.1_Intron	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	78					androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.0?(13)|p.?(3)|p.W78*(1)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTTAACTTGGGAGAAAGTTT	0.284		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			50	15					0	0	0	0
CAB39L	81617	broad.mit.edu	37	13	49957001	49957001	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:49957001C>A	uc001vcw.2	-	2	544	c.46G>T	c.(46-48)GAA>TAA	p.E16*	CAB39L_uc001vcx.2_Nonsense_Mutation_p.E16*|CAB39L_uc010adf.2_Nonsense_Mutation_p.E13*	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	16					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		TTCACAATTTCTGCTGGATTT	0.308													60	21					6.20203e-27	2.26e-26	1	0
ATP7B	540	broad.mit.edu	37	13	52542619	52542619	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:52542619C>T	uc001vfw.2	-	4	1825	c.1668G>A	c.(1666-1668)ATG>ATA	p.M556I	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Missense_Mutation_p.M556I|ATP7B_uc001vfy.2_Missense_Mutation_p.M445I|ATP7B_uc010tgt.1_Missense_Mutation_p.M556I|ATP7B_uc010tgu.1_Missense_Mutation_p.M556I|ATP7B_uc010tgv.1_Missense_Mutation_p.M556I|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	556	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CGTAGTCCTCCATGACTGCTG	0.522									Wilson_disease				29	6					0	0	0	0
KLHL1	57626	broad.mit.edu	37	13	70281880	70281880	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:70281880C>A	uc001vip.2	-	10	2858	c.2064G>T	c.(2062-2064)ATG>ATT	p.M688I	KLHL1_uc010thm.1_Missense_Mutation_p.M627I	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	688	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CATCTCTGGGCATACTCAAAG	0.408													29	6					3.57733e-08	1.02947e-07	1	0
DOCK9	23348	broad.mit.edu	37	13	99540717	99540717	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:99540717A>T	uc001vnt.2	-	17	1932	c.1877T>A	c.(1876-1878)GTG>GAG	p.V626E	DOCK9_uc001vnw.2_Missense_Mutation_p.V625E|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.V626E|DOCK9_uc010tis.1_Missense_Mutation_p.V625E|DOCK9_uc010tit.1_Missense_Mutation_p.V626E|DOCK9_uc010afu.1_Missense_Mutation_p.V441E	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	626					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TATGCAGGGCACAAATTCCTC	0.383													107	37					0	0	0	0
NALCN	259232	broad.mit.edu	37	13	102047697	102047697	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr13:102047697C>A	uc001vox.1	-	3	317	c.128G>T	c.(127-129)CGC>CTC	p.R43L	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.R43L|NALCN_uc001vpa.2_Missense_Mutation_p.R43L	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	43	Helical; Name=S1 of repeat I; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGCACAGATGCGCAGCAAAGA	0.433													39	11					2.35958e-20	8.12056e-20	1	0
OR4K5	79317	broad.mit.edu	37	14	20389063	20389063	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:20389063C>T	uc010tkw.1	+	1	298	c.298C>T	c.(298-300)CAA>TAA	p.Q100*		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCATAGCCCAAATTTTCTT	0.413													76	44					0	0	0	0
LTB4R	1241	broad.mit.edu	37	14	24785367	24785367	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:24785367G>T	uc001wos.2	+	2	831	c.510G>T	c.(508-510)CCG>CCT	p.P170P	LTB4R_uc010alp.2_Silent_p.P170P|LTB4R_uc001wou.2_Silent_p.P170P	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	170	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		TGTGCTTCCCGCGGTACCCCA	0.622													39	25					4.0492e-12	1.27772e-11	1	0
PRKD1	5587	broad.mit.edu	37	14	30046533	30046533	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:30046533G>T	uc001wqh.2	-	18	2831	c.2650C>A	c.(2650-2652)CTG>ATG	p.L884M		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	884					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		GGATTGATCAGGTGTGTGGGG	0.537													48	19					7.05377e-20	2.41345e-19	1	0
RALGAPA1	253959	broad.mit.edu	37	14	36217955	36217955	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:36217955G>T	uc001wti.2	-	10	1478	c.1087C>A	c.(1087-1089)CCC>ACC	p.P363T	RALGAPA1_uc001wtj.2_Missense_Mutation_p.P363T|RALGAPA1_uc010tpv.1_Missense_Mutation_p.P363T|RALGAPA1_uc010tpw.1_Missense_Mutation_p.P363T|RALGAPA1_uc001wtk.1_Missense_Mutation_p.P214T	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	363					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						GACTGTTCGGGTTCTGTAGTT	0.363													13	13					2.23348e-06	6.11351e-06	1	0
ERO1L	30001	broad.mit.edu	37	14	53130549	53130549	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:53130549T>C	uc001wzv.2	-	8	872	c.646A>G	c.(646-648)AGA>GGA	p.R216G	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	216					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					TTTAAAGGTCTTTTAATTGTC	0.318													2	14					0	0	0	0
GPHN	10243	broad.mit.edu	37	14	67389587	67389587	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:67389587G>C	uc001xiy.2	+	7	1782	c.661G>C	c.(661-663)GAC>CAC	p.D221H	GPHN_uc001xiw.2_Missense_Mutation_p.D203H|GPHN_uc001xix.2_Missense_Mutation_p.D221H|GPHN_uc010tss.1_Missense_Mutation_p.D234H|GPHN_uc010tst.1_Missense_Mutation_p.D190H|GPHN_uc010tsu.1_Missense_Mutation_p.D111H	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	221	Interaction with GABARAP (By similarity).				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		AGAGAAGAAAGACAGTGGTGT	0.483			T	MLL	AL								38	28					0	0	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72054795	72054795	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:72054795C>T	uc001xms.2	+	2	554	c.206C>T	c.(205-207)CCC>CTC	p.P69L	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P69L|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P69L|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P69L	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	69					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCTCAACCCCCGGAGTCCCA	0.507													48	20					0	0	0	0
ACOT4	122970	broad.mit.edu	37	14	74060510	74060510	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:74060510C>T	uc001xoo.2	+	2	816	c.562C>T	c.(562-564)CTA>TTA	p.L188L		NM_152331	NP_689544	Q8N9L9	ACOT4_HUMAN	acyl-CoA thioesterase 4	188				ALAY -> DLQS (in Ref. 1; BAC04313).	acyl-CoA metabolic process|dicarboxylic acid metabolic process|long-chain fatty acid metabolic process|saturated monocarboxylic acid metabolic process|short-chain fatty acid metabolic process|succinyl-CoA metabolic process|unsaturated monocarboxylic acid metabolic process|very long-chain fatty acid metabolic process	peroxisome	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		CACGTTGGCTCTAGCTTATTA	0.493													49	16					0	0	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933495	94933495	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:94933495C>A	uc001ydf.2	-	3	1068	c.907G>T	c.(907-909)GCC>TCC	p.A303S	SERPINA9_uc001yde.2_Missense_Mutation_p.A203S|SERPINA9_uc010avc.2_Missense_Mutation_p.A154S|SERPINA9_uc001ydg.2_Missense_Mutation_p.A267S|SERPINA9_uc001ydh.1_Missense_Mutation_p.A303S|SERPINA9_uc001ydi.1_Missense_Mutation_p.A267S	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	285					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		GCTGACAAGGCCTGTTCCAGT	0.537													19	20					8.00594e-06	2.1662e-05	1	0
HHIPL1	84439	broad.mit.edu	37	14	100119179	100119179	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:100119179G>A	uc010avs.2	+	2	939	c.874G>A	c.(874-876)GAG>AAG	p.E292K	HHIPL1_uc001ygl.1_Missense_Mutation_p.E292K	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	292					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				CGAGGATGACGAGAACGCCGT	0.607													12	9					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106406028	106406028	+	RNA	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:106406028G>A	uc010tyt.1	-	2357		c.42119C>T								Parts of antibodies, mostly variable regions.												0						GCCCAGCACGGGCAGGAAGAT	0.567													14	10					0	0	0	0
OR4M2	390538	broad.mit.edu	37	15	22368621	22368621	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:22368621G>T	uc010tzu.1	+	1	46	c.46G>T	c.(46-48)GGC>TGC	p.G16C	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGTTCTCACTGGCCTATCCCA	0.333													44	135					1.41504e-22	4.95683e-22	1	0
NDN	4692	broad.mit.edu	37	15	23931741	23931741	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:23931741G>C	uc001ywk.2	-	1	710	c.624C>G	c.(622-624)AGC>AGG	p.S208R		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	208	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TCCAGACGGCGCTCTCTCTGG	0.637									Prader-Willi_syndrome				19	27					0	0	0	0
BUB1B	701	broad.mit.edu	37	15	40494809	40494809	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:40494809C>T	uc001zkx.3	+	14	1860	c.1648C>T	c.(1648-1650)CGA>TGA	p.R550*	BUB1B_uc010ucl.1_Nonsense_Mutation_p.R418*	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	550					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		AGATCCCCCACGAGTTTTAGC	0.398			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				56	89					0	0	0	0
C15orf23	90417	broad.mit.edu	37	15	40675055	40675055	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:40675055C>A	uc001zll.2	+	1	134	c.19C>A	c.(19-21)CCG>ACG	p.P7T	C15orf23_uc010ucp.1_Missense_Mutation_p.P7T|C15orf23_uc001zlo.2_Missense_Mutation_p.P7T|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	7						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		TCCCGAAGCCCCGCCCCTGGA	0.592													10	13					2.17888e-05	5.85511e-05	1	0
SPTBN5	51332	broad.mit.edu	37	15	42159161	42159161	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:42159161G>A	uc001zos.2	-	36	6704	c.6371C>T	c.(6370-6372)ACC>ATC	p.T2124I	hsa-mir-4310|MI0015840_5'Flank	NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2159	Spectrin 18.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TCTGACCTGGGTTGCGGCCTG	0.647													6	4					0	0	0	0
DUOX2	50506	broad.mit.edu	37	15	45402630	45402630	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:45402630T>A	uc010bea.2	-	9	1239	c.1036A>T	c.(1036-1038)ATG>TTG	p.M346L	DUOX2_uc001zun.2_Missense_Mutation_p.M346L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	346	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCTCACCTCATGTAGACACCA	0.577													21	21					0	0	0	0
UNC13C	440279	broad.mit.edu	37	15	54586184	54586184	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:54586184G>T	uc002ack.2	+	9	3910	c.3910G>T	c.(3910-3912)GAG>TAG	p.E1304*	UNC13C_uc002acl.2_Nonsense_Mutation_p.E134*	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1304	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TTTCAAAAAGGAGTCAGATGA	0.358													61	83					4.09106e-26	1.48617e-25	1	0
NEDD4	4734	broad.mit.edu	37	15	56130375	56130375	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:56130375G>C	uc002adj.2	-	19	3688	c.3388C>G	c.(3388-3390)CAT>GAT	p.H1130D	NEDD4_uc002adl.2_Missense_Mutation_p.H711D|NEDD4_uc002adi.2_Missense_Mutation_p.H1058D|NEDD4_uc010ugj.1_Missense_Mutation_p.H1114D|NEDD4_uc010bfm.2_Missense_Mutation_p.H1113D|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1130	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TCATGTTGATGTGTCTAAAAT	0.244													2	9					0	0	0	0
KIAA1024	23251	broad.mit.edu	37	15	79750339	79750339	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:79750339G>T	uc002bew.1	+	2	1925	c.1850G>T	c.(1849-1851)CGT>CTT	p.R617L	KIAA1024_uc010unk.1_Missense_Mutation_p.R617L	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	617						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						TCGGGTGTCCGTGATGAAATC	0.488													32	54					8.88839e-20	3.03236e-19	1	0
AKAP13	11214	broad.mit.edu	37	15	86123011	86123011	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:86123011C>T	uc002blv.1	+	7	1882	c.1712C>T	c.(1711-1713)TCA>TTA	p.S571L	AKAP13_uc002blt.1_Missense_Mutation_p.S571L|AKAP13_uc002blu.1_Missense_Mutation_p.S571L	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	571					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						ACGGAAACTTCACGAAGTCGT	0.443													50	70					0	0	0	0
AGBL1	123624	broad.mit.edu	37	15	87066040	87066040	+	Splice_Site	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:87066040G>T	uc002blz.1	+	18	2498	c.2418_splice	c.e18-1	p.N806_splice		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1						C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGTTCCTGTAGCCACAGATGC	0.388													40	32					1.60099e-16	5.35329e-16	1	0
GRIN2A	2903	broad.mit.edu	37	16	9857768	9857768	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:9857768G>A	uc002czo.3	-	13	4181	c.3633C>T	c.(3631-3633)TCC>TCT	p.S1211S	GRIN2A_uc010uym.1_Silent_p.S1211S|GRIN2A_uc010uyn.1_Silent_p.S1054S|GRIN2A_uc002czr.3_Silent_p.S1211S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1211	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCAGTGCGTGGAGTTCTGCC	0.552													194	158					0	0	0	0
PDILT	204474	broad.mit.edu	37	16	20386177	20386177	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:20386177G>C	uc002dhc.1	-	5	871	c.648C>G	c.(646-648)CAC>CAG	p.H216Q		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	216					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CAAGGGTGACGTGGAAACGCC	0.398													56	41					0	0	0	0
IGSF6	10261	broad.mit.edu	37	16	21654459	21654459	+	Missense_Mutation	SNP	C	A	A	rs146422757		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:21654459C>A	uc002djg.1	-	5	655	c.602G>T	c.(601-603)CGT>CTT	p.R201L	uc002diq.3_Intron|METTL9_uc002dje.2_Intron|METTL9_uc002djf.2_Intron	NM_005849	NP_005840	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6 precursor	201	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0				GBM - Glioblastoma multiforme(48;0.066)		CTGAAAAATACGCCGAGCACT	0.328													64	55					2.37532e-16	7.91998e-16	1	0
OTOA	146183	broad.mit.edu	37	16	21742247	21742247	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:21742247C>T	uc002djh.2	+	20	2298	c.2297C>T	c.(2296-2298)ACA>ATA	p.T766I	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.T687I|OTOA_uc002dji.2_Missense_Mutation_p.T442I|OTOA_uc010vbk.1_Missense_Mutation_p.T414I	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	780					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TCTATAGCCACAAAGGTAATG	0.453													24	27					0	0	0	0
ERN2	10595	broad.mit.edu	37	16	23706706	23706706	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:23706706G>C	uc002dma.3	-	15	1928	c.1759C>G	c.(1759-1761)CAG>GAG	p.Q587E	ERN2_uc010bxp.2_Missense_Mutation_p.Q535E	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	539	Protein kinase.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		CCCTCAAACTGTCCCCTGGAA	0.512													9	6					0	0	0	0
AQP8	343	broad.mit.edu	37	16	25238439	25238439	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:25238439C>T	uc002doc.2	+	5	735	c.653C>T	c.(652-654)GCG>GTG	p.A218V		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	218	Extracellular (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		TTTGGACCTGCGGTGGTGGCC	0.607													32	84					0	0	0	0
ZNF764	92595	broad.mit.edu	37	16	30566697	30566697	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:30566697C>T	uc002dyq.2	-	3	1126	c.1045G>A	c.(1045-1047)GGC>AGC	p.G349S	ZNF764_uc002dyr.1_Missense_Mutation_p.G348S	NM_033410	NP_219363	Q96H86	ZN764_HUMAN	zinc finger protein 764	349	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGCGGCGGCCGCACTGCGGG	0.736													7	13					0	0	0	0
SRCAP	10847	broad.mit.edu	37	16	30749357	30749357	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:30749357G>T	uc002dze.1	+	34	8381	c.7996G>T	c.(7996-7998)GAG>TAG	p.E2666*	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Nonsense_Mutation_p.E2461*	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2666	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GCCACTTCAGGAGCCACTGGA	0.592													34	70					5.91797e-21	2.06078e-20	1	0
KARS	3735	broad.mit.edu	37	16	75675607	75675607	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:75675607C>A	uc002feq.2	-	2	125	c.77G>T	c.(76-78)CGC>CTC	p.R26L	KARS_uc002fer.2_Missense_Mutation_p.R54L|KARS_uc002fes.2_5'UTR|KARS_uc010cgz.2_5'Flank|KARS_uc010cha.1_Missense_Mutation_p.R63L	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	26				Missing: Loss of nuclear localization, but no effect on packaging into HIV-1.	interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	AGCTTTCAGGCGTCTCTTCAG	0.478													30	26					7.01153e-11	2.16036e-10	1	0
ATMIN	23300	broad.mit.edu	37	16	81069786	81069786	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:81069786A>T	uc002ffz.1	+	1	329	c.311A>T	c.(310-312)CAC>CTC	p.H104L	ATMIN_uc002fga.2_5'Flank|ATMIN_uc010vnn.1_5'Flank	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	104	C2H2-type 1.				response to DNA damage stimulus	nucleus	zinc ion binding				0						CTCAACATGCACCTAGTCAAG	0.602													12	4					0	0	0	0
USP10	9100	broad.mit.edu	37	16	84793532	84793532	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:84793532T>G	uc002fii.2	+	7	1572	c.1430T>G	c.(1429-1431)GTA>GGA	p.V477G	USP10_uc010voe.1_Missense_Mutation_p.V481G|USP10_uc010vof.1_Missense_Mutation_p.V39G|USP10_uc002fij.2_Missense_Mutation_p.V3G	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	477					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						AATATGCCAGTACCTCCAAAA	0.328													27	18					0	0	0	0
PITPNM3	83394	broad.mit.edu	37	17	6377866	6377866	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:6377866G>T	uc002gdd.3	-	10	1295	c.1144C>A	c.(1144-1146)CTC>ATC	p.L382I	PITPNM3_uc010cln.2_Missense_Mutation_p.L346I|PITPNM3_uc010clm.2_5'Flank|PITPNM3_uc002gdc.3_5'UTR	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	382					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		ACCTCAGGGAGCTGCGGCCCC	0.667													9	3					0.000274275	0.000715791	1	0
TP53	7157	broad.mit.edu	37	17	7574017	7574017	+	Missense_Mutation	SNP	C	A	A	rs121912664		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:7574017C>A	uc002gim.2	-	10	1204	c.1010G>T	c.(1009-1011)CGC>CTC	p.R337L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Missense_Mutation_p.R205L|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Missense_Mutation_p.R337L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	337	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Interaction with HIPK2.		R -> H (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R337C(12)|p.0?(7)|p.R337L(5)|p.R337H(2)|p.?(1)|p.I332fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CATCTCGAAGCGCTCACGCCC	0.453		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			20	11					1.9806e-07	5.59032e-07	1	0
PER1	5187	broad.mit.edu	37	17	8044497	8044497	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:8044497G>A	uc002gkd.2	-	23	4000	c.3762C>T	c.(3760-3762)GCC>GCT	p.A1254A	PER1_uc010cns.2_Silent_p.A128A|PER1_uc010vuq.1_RNA	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	1254	CRY binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CCCCGCCTTGGGCCTCCTCGC	0.637			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					118	56					0	0	0	0
PFAS	5198	broad.mit.edu	37	17	8168408	8168408	+	Missense_Mutation	SNP	A	T	T	rs146379979		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:8168408A>T	uc002gkr.2	+	18	2386	c.2245A>T	c.(2245-2247)ACC>TCC	p.T749S	PFAS_uc010vuv.1_Missense_Mutation_p.T325S|PFAS_uc002gks.2_5'Flank	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	749					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CGAAGCCCTCACCAACCTGGT	0.622													16	5					0	0	0	0
MYH8	4626	broad.mit.edu	37	17	10302868	10302868	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:10302868G>C	uc002gmm.2	-	28	3949	c.3854C>G	c.(3853-3855)ACA>AGA	p.T1285R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1285	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ACCCGCTTCTGTCTGCAGGCG	0.473									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				45	16					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10395801	10395801	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:10395801C>T	uc002gmo.2	-	40	5846	c.5752G>A	c.(5752-5754)GAG>AAG	p.E1918K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1918	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ACCTGGGACTCAGCAATGTCA	0.488													62	31					0	0	0	0
CCDC144C	348254	broad.mit.edu	37	17	20224898	20224898	+	RNA	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:20224898C>T	uc010cqy.1	+	1		c.412C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						GCTGCCCGGTCGGGCGACGTC	0.642													91	79					0	0	0	0
UNC45B	146862	broad.mit.edu	37	17	33486400	33486400	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:33486400A>G	uc002hja.2	+	8	912	c.815A>G	c.(814-816)AAG>AGG	p.K272R	UNC45B_uc002hjb.2_Missense_Mutation_p.K272R|UNC45B_uc002hjc.2_Missense_Mutation_p.K272R|UNC45B_uc010cto.2_Missense_Mutation_p.K272R	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	272					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TCAGACACCAAGAAGGACCTG	0.507													130	233					0	0	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42274669	42274669	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:42274669C>A	uc002iga.2	-	3	374	c.283G>T	c.(283-285)GCC>TCC	p.A95S	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Missense_Mutation_p.A95S	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	95	SGF11-type.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		AAGCGGGAGGCGGCAATGCTG	0.592													74	84					2.23852e-25	8.03276e-25	1	0
MYST2	11143	broad.mit.edu	37	17	47886541	47886541	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:47886541G>A	uc002ipm.2	+	6	850	c.724G>A	c.(724-726)GAC>AAC	p.D242N	MYST2_uc002ipl.1_Intron|MYST2_uc010wma.1_Missense_Mutation_p.D103N|MYST2_uc010wmb.1_Intron|MYST2_uc010wmc.1_Intron|MYST2_uc010wmd.1_Missense_Mutation_p.D86N|MYST2_uc010wme.1_Intron	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	242					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CAGGCAAGATGACAACAACAG	0.473													15	41					0	0	0	0
SPAG9	9043	broad.mit.edu	37	17	49074019	49074019	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:49074019C>T	uc002itc.2	-	16	2084	c.1875G>A	c.(1873-1875)AAG>AAA	p.K625K	SPAG9_uc002itb.2_Silent_p.K611K|SPAG9_uc002itd.2_Silent_p.K615K|SPAG9_uc002itf.2_Silent_p.K446K|SPAG9_uc002ita.2_Silent_p.K468K|SPAG9_uc002ite.2_Silent_p.K455K	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	625					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			ACTGCTCTCTCTTTTGTTCTC	0.393													12	32					0	0	0	0
PRKAR1A	5573	broad.mit.edu	37	17	66511665	66511665	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:66511665G>T	uc002jhg.2	+	2	305	c.125G>T	c.(124-126)CGA>CTA	p.R42L	PRKAR1A_uc002jhh.2_Missense_Mutation_p.R42L|PRKAR1A_uc002jhi.2_Missense_Mutation_p.R42L|PRKAR1A_uc002jhj.2_Missense_Mutation_p.R42L|PRKAR1A_uc002jhk.2_5'UTR|PRKAR1A_uc002jhl.2_Missense_Mutation_p.R42L|PRKAR1A_uc002jhm.2_Missense_Mutation_p.R42L	NM_212471	NP_997636	P10644	KAP0_HUMAN	cAMP-dependent protein kinase, regulatory	42	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity|protein binding			adrenal_gland(4)|lung(3)|thyroid(2)|soft_tissue(2)|breast(1)	12	Breast(10;1.64e-13)					TGCACTGCTCGACCTGAGAGA	0.473			T|Mis|N|F|S	RET	papillary thyroid	myxoma|endocrine|papillary thyroid			Carney_Complex|Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial|Cardiac_Myxomas_Familial_Clustering_of				13	17					4.7546e-09	1.40255e-08	1	0
ABCA8	10351	broad.mit.edu	37	17	66914238	66914238	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:66914238C>T	uc002jhp.2	-	14	2056	c.1877G>A	c.(1876-1878)CGC>CAC	p.R626H	ABCA8_uc002jhq.2_Missense_Mutation_p.R666H|ABCA8_uc010wqq.1_Missense_Mutation_p.R666H|ABCA8_uc010wqr.1_Missense_Mutation_p.R605H|ABCA8_uc002jhr.2_Missense_Mutation_p.R666H	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	626	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GAGGATCACGCGGTCTGTTTT	0.458													22	39					0	0	0	0
KIF19	124602	broad.mit.edu	37	17	72348368	72348368	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:72348368G>T	uc002jkm.3	+	14	2007	c.1869G>T	c.(1867-1869)CTG>CTT	p.L623L	KIF19_uc002jkl.2_Silent_p.L581L	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	623					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						ACTACAACCTGGCCGTCCCGC	0.687													9	30					3.09899e-07	8.66391e-07	1	0
ENPP7	339221	broad.mit.edu	37	17	77708950	77708950	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr17:77708950A>G	uc002jxa.2	+	3	528	c.508A>G	c.(508-510)ACG>GCG	p.T170A		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	170					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CAAAAATGAGACGGAGTGGAG	0.597													21	31					0	0	0	0
SMCHD1	23347	broad.mit.edu	37	18	2770009	2770009	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:2770009G>C	uc002klm.3	+	39	5058	c.4869G>C	c.(4867-4869)ATG>ATC	p.M1623I	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1623					chromosome organization		ATP binding				0						AGCAACAAATGGCAGCACTTA	0.279													14	35					0	0	0	0
MYOM1	8736	broad.mit.edu	37	18	3129467	3129467	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:3129467C>A	uc002klp.2	-	18	2891	c.2557G>T	c.(2557-2559)GGA>TGA	p.G853*	MYOM1_uc002klq.2_Intron	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	853						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GCGGTTAGTCCACCAGGCTCA	0.567											OREG0024838	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	64					8.04919e-23	2.82803e-22	1	0
EPB41L3	23136	broad.mit.edu	37	18	5415942	5415942	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:5415942A>T	uc002kmt.1	-	13	2028	c.1942T>A	c.(1942-1944)TTC>ATC	p.F648I	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	648	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GGCACTGAGAAGGAGGCAGAC	0.577													29	45					0	0	0	0
C18orf19	125228	broad.mit.edu	37	18	13681843	13681843	+	Silent	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:13681843T>A	uc010dlh.2	-	3	666	c.234A>T	c.(232-234)CCA>CCT	p.P78P	C18orf19_uc010dlg.2_Silent_p.P78P|C18orf19_uc010dli.2_Silent_p.P78P|C18orf19_uc002ksj.3_Silent_p.P78P|C18orf19_uc010dlj.2_Intron	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	78						integral to membrane				breast(2)	2						GAAGGACTCCTGGTTGGGGTG	0.488													59	108					0	0	0	0
CDH2	1000	broad.mit.edu	37	18	25591835	25591835	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:25591835C>A	uc002kwg.2	-	4	980	c.521G>T	c.(520-522)GGA>GTA	p.G174V	CDH2_uc010xbn.1_Missense_Mutation_p.G143V	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	174	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						AGGAAAAGGTCCCCTGGAGTT	0.408													45	176					2.24722e-20	7.75653e-20	1	0
MAPRE2	10982	broad.mit.edu	37	18	32706962	32706962	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:32706962C>T	uc002kyg.2	+	5	841	c.661C>T	c.(661-663)CCC>TCC	p.P221S	MAPRE2_uc010xcb.1_Missense_Mutation_p.P178S|MAPRE2_uc010xcc.1_Missense_Mutation_p.P209S|MAPRE2_uc002kyf.2_Missense_Mutation_p.P221S|MAPRE2_uc002kyh.2_Missense_Mutation_p.P168S|MAPRE2_uc010xcd.1_Missense_Mutation_p.P178S	NM_014268	NP_055083	Q15555	MARE2_HUMAN	microtubule-associated protein, RP/EB family,	221	DCTN1-binding.				cell division|cell proliferation|mitosis|signal transduction	cytoplasm|microtubule	microtubule binding			ovary(1)	1						ACCTTCTCGACCCTCATCAGC	0.418													66	33					0	0	0	0
C18orf25	147339	broad.mit.edu	37	18	43795987	43795987	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:43795987G>T	uc002lbw.2	+	2	520	c.141G>T	c.(139-141)GCG>GCT	p.A47A	C18orf25_uc002lbx.2_Silent_p.A47A	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	47										central_nervous_system(2)	2						ATGGTGTAGCGGATTCTACAG	0.458													91	25					6.71967e-41	2.61025e-40	1	0
ST8SIA5	29906	broad.mit.edu	37	18	44284609	44284609	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:44284609C>A	uc002lcj.1	-	2	718	c.150G>T	c.(148-150)GAG>GAT	p.E50D	ST8SIA5_uc002lci.1_Translation_Start_Site|ST8SIA5_uc010xcy.1_Missense_Mutation_p.E86D|ST8SIA5_uc010xcz.1_Intron|ST8SIA5_uc010dno.1_Missense_Mutation_p.E86D	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	50	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CAAAAGGCCCCTCATAAAATT	0.512													7	241					0.00307968	0.0078289	1	0
TCEB3B	51224	broad.mit.edu	37	18	44560256	44560256	+	Silent	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:44560256T>C	uc002lcr.1	-	1	1733	c.1380A>G	c.(1378-1380)TCA>TCG	p.S460S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	460					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CCCAGAGCTCTGAGAAGACAT	0.592													103	72					0	0	0	0
DCC	1630	broad.mit.edu	37	18	50866235	50866235	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr18:50866235C>A	uc002lfe.1	+	15	2904	c.2317C>A	c.(2317-2319)CGT>AGT	p.R773S	DCC_uc010xdr.1_Missense_Mutation_p.R621S|DCC_uc010dpf.1_Missense_Mutation_p.R428S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	773	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGAGACAGTGCGTGTGGACAG	0.418													68	49					3.13765e-25	1.1225e-24	1	0
LPPR3	79948	broad.mit.edu	37	19	813188	813188	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:813188G>A	uc002lpx.1	-	8	1603	c.1539C>T	c.(1537-1539)GCC>GCT	p.A513A	LPPR3_uc010dru.1_Silent_p.A425A|LPPR3_uc002lpw.1_Silent_p.A541A|LPPR3_uc002lpy.1_Silent_p.A294A|hsa-mir-3187|MI0014231_5'Flank	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	513						integral to membrane	phosphatidate phosphatase activity				0						CGCGCACCCCGGCGCCGCTTT	0.637													8	9					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9064360	9064360	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:9064360C>T	uc002mkp.2	-	3	23290	c.23086G>A	c.(23086-23088)GTG>ATG	p.V7696M		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7698	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGAGGTCACGGCAGGTAAA	0.582													18	49					0	0	0	0
DNMT1	1786	broad.mit.edu	37	19	10265725	10265725	+	Silent	SNP	G	A	A	rs75443147	by1000genomes	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:10265725G>A	uc002mng.2	-	19	1632	c.1452C>T	c.(1450-1452)GCC>GCT	p.A484A	DNMT1_uc010xlc.1_Silent_p.A500A|DNMT1_uc002mnh.2_Silent_p.A379A|DNMT1_uc010xld.1_Silent_p.A484A	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	484	DNA replication foci-targeting sequence (By similarity).|Homodimerization.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GAATGTATTCGGCAAATGCTG	0.532													37	38					0	0	0	0
MAST1	22983	broad.mit.edu	37	19	12958435	12958435	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:12958435C>T	uc002mvm.2	+	6	626	c.498C>T	c.(496-498)CGC>CGT	p.R166R	MAST1_uc002mvk.2_Silent_p.R162R|MAST1_uc002mvl.2_Missense_Mutation_p.A140V	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	166					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GCCCCGGGCGCTCCCCCTCCT	0.627											OREG0025277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	43					0	0	0	0
IL27RA	9466	broad.mit.edu	37	19	14163009	14163009	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:14163009C>A	uc002mxx.2	+	14	2241	c.1818C>A	c.(1816-1818)ACC>ACA	p.T606T		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	606	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CCCAGGCCACCGCCCCGCTTG	0.662													16	14					3.52763e-06	9.61116e-06	1	0
CIB3	117286	broad.mit.edu	37	19	16275696	16275696	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:16275696C>A	uc002nds.2	-	5	375	c.375G>T	c.(373-375)GCG>GCT	p.A125A	CIB3_uc010eae.2_Silent_p.A64A|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Silent_p.A76A	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	125	EF-hand 2.|1 (Potential).						calcium ion binding			ovary(1)	1						CCAGGTCCCACGCACAAATGT	0.597													28	87					1.04121e-07	2.96733e-07	1	0
GLT25D1	79709	broad.mit.edu	37	19	17679367	17679367	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:17679367G>T	uc002nhc.1	+	5	686	c.674G>T	c.(673-675)CGC>CTC	p.R225L	GLT25D1_uc010eax.1_5'UTR	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	225					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						AAGCGAGACCGCCGGGGCTGC	0.617													25	43					1.77063e-15	5.85403e-15	1	0
UNC13A	23025	broad.mit.edu	37	19	17766748	17766748	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:17766748G>T	uc002nhd.2	-	11	1491	c.1491C>A	c.(1489-1491)GAC>GAA	p.D497E		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	409					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CAGGCACCTTGTCGGGCGTGG	0.697													5	16					1.23904e-05	3.34484e-05	1	0
HAPLN4	404037	broad.mit.edu	37	19	19368850	19368850	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:19368850G>A	uc002nmb.2	-	5	1040	c.985C>T	c.(985-987)CGC>TGC	p.R329C	HAPLN4_uc002nmc.2_Missense_Mutation_p.R329C	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	329	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			ATGGGGTAGCGCGCACTGCCA	0.731													4	4					0	0	0	0
LOC284441	284441	broad.mit.edu	37	19	20370044	20370044	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:20370044G>A	uc002nov.2	+	1	1588	c.837G>A	c.(835-837)GCG>GCA	p.A279A		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						AGGATGATGCGGAAAAACTTC	0.423													20	13					0	0	0	0
SLC7A9	11136	broad.mit.edu	37	19	33333131	33333131	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:33333131C>A	uc002ntv.3	-	11	1284	c.1167G>T	c.(1165-1167)ACG>ACT	p.T389T	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Silent_p.T389T|SLC7A9_uc002ntw.3_Silent_p.T180T	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	389	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GTCCTAGAATCGTCAGGCCAT	0.428													15	42					4.7546e-09	1.40255e-08	1	0
FCGBP	8857	broad.mit.edu	37	19	40421289	40421289	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:40421289G>A	uc002omp.3	-	5	2640	c.2632C>T	c.(2632-2634)CGG>TGG	p.R878W		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	878	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGAAGCGCCGGCCGTCGAAG	0.667													4	9					0	0	0	0
FKRP	79147	broad.mit.edu	37	19	47259642	47259642	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:47259642G>A	uc002pfn.2	+	4	1232	c.935G>A	c.(934-936)CGC>CAC	p.R312H	FKRP_uc002pfp.2_Missense_Mutation_p.R312H	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	312			R -> C (in MDDGC5).			extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		TACGAGGAGCGCTGGACGCCC	0.726													6	4					0	0	0	0
TSKS	60385	broad.mit.edu	37	19	50245223	50245223	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:50245223C>T	uc002ppm.2	-	9	1427	c.1416G>A	c.(1414-1416)CTG>CTA	p.L472L		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	472							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		CTAGTGAGGTCAGTGCTCGGT	0.607													27	38					0	0	0	0
KLK8	11202	broad.mit.edu	37	19	51503433	51503433	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:51503433G>A	uc002pur.1	-	4	491	c.312C>T	c.(310-312)ATC>ATT	p.I104I	KLK8_uc002puq.1_Silent_p.I149I|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Silent_p.I104I|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	104	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		AGGGGTGTGGGATGGACTGAA	0.522													54	62					0	0	0	0
KLK9	284366	broad.mit.edu	37	19	51507039	51507039	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:51507039C>T	uc002pux.1	-	4	611	c.524G>A	c.(523-525)TGT>TAT	p.C175Y	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Missense_Mutation_p.C146Y|KLK8_uc002puq.1_5'Flank|KLK8_uc002pur.1_5'Flank|KLK8_uc002pus.1_5'Flank|KLK8_uc002put.1_5'Flank|KLK8_uc002puu.1_5'Flank|KLK9_uc002puv.1_RNA	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	175	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		TGCCCAGTGACAGAGTTTGTT	0.567													21	35					0	0	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473080	53473080	+	RNA	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:53473080T>C	uc002qan.3	-	4		c.1421A>G				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						GAGATGAATTTTGAACAAAGG	0.373													18	50					0	0	0	0
PEG3	5178	broad.mit.edu	37	19	57335999	57335999	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:57335999C>T	uc002qnu.2	-	1	376	c.25G>A	c.(25-27)GCC>ACC	p.A9T	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.A9T|PEG3_uc002qnv.2_Missense_Mutation_p.A9T|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Missense_Mutation_p.A9T	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	9					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGTTTGGTGGCAGACAAGTGC	0.488													18	58					0	0	0	0
ZIM3	114026	broad.mit.edu	37	19	57647112	57647112	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:57647112T>C	uc002qnz.1	-	5	979	c.593A>G	c.(592-594)CAT>CGT	p.H198R		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	198	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCCACAGCTATGACATTCAAA	0.438													68	69					0	0	0	0
NBAS	51594	broad.mit.edu	37	2	15679480	15679480	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:15679480A>T	uc002rcc.1	-	7	406	c.380T>A	c.(379-381)GTT>GAT	p.V127D	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	127										ovary(2)|liver(1)|skin(1)	4						GTCTTTCGGAACTAGAACAAA	0.398													5	39					0	0	0	0
CIB4	130106	broad.mit.edu	37	2	26852280	26852280	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:26852280G>T	uc002rhm.2	-	3	213	c.184C>A	c.(184-186)CGG>AGG	p.R62R		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	62	EF-hand 1.						calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACTCACCCGCAGAGCTGGC	0.622													4	9					0.000602214	0.00155782	1	0
KHK	3795	broad.mit.edu	37	2	27322328	27322328	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:27322328G>T	uc002ril.2	+	7	1211	c.694G>T	c.(694-696)GCC>TCC	p.A232S	KHK_uc002rim.2_Missense_Mutation_p.A232S|KHK_uc002rin.2_Missense_Mutation_p.A233S|KHK_uc002rio.2_Missense_Mutation_p.A148S|CGREF1_uc010ylf.1_3'UTR|CGREF1_uc002rip.1_3'UTR	NM_000221	NP_000212	P50053	KHK_HUMAN	ketohexokinase isoform a	232					fructose catabolic process	cytosol	ATP binding|ketohexokinase activity|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGCGCCGACGCCCTGGGCCC	0.652													17	70					1.56452e-12	4.97688e-12	1	0
SNX17	9784	broad.mit.edu	37	2	27596131	27596131	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:27596131C>A	uc002rkg.1	+	4	496	c.274C>A	c.(274-276)CTT>ATT	p.L92I	EIF2B4_uc002rka.2_5'Flank|EIF2B4_uc002rkb.2_5'Flank|EIF2B4_uc002rkc.2_5'Flank|EIF2B4_uc002rkd.2_5'Flank|EIF2B4_uc002rke.2_5'Flank|EIF2B4_uc002rkf.1_5'Flank|SNX17_uc010ylj.1_Missense_Mutation_p.L72I|SNX17_uc010ylk.1_5'UTR|SNX17_uc010eza.1_5'UTR|SNX17_uc002rki.1_RNA|SNX17_uc002rkh.1_5'UTR|SNX17_uc010yll.1_5'UTR|SNX17_uc010ylm.1_5'UTR|SNX17_uc010yln.1_Missense_Mutation_p.L80I|SNX17_uc010ylo.1_Missense_Mutation_p.L10I|SNX17_uc010ylp.1_Missense_Mutation_p.L67I|SNX17_uc010ylq.1_5'UTR	NM_014748	NP_055563	Q15036	SNX17_HUMAN	sorting nexin 17	92	PX.				cell communication|endosome transport|intracellular protein transport|regulation of endocytosis|signal transduction	cytoplasmic vesicle membrane|cytosol|early endosome|Golgi apparatus	low-density lipoprotein particle receptor binding|phosphatidylinositol binding|protein C-terminus binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGACCCATTGCTTGGGAGCAG	0.527													17	68					0.000958276	0.00246264	1	0
SLC4A1AP	22950	broad.mit.edu	37	2	27898488	27898488	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:27898488G>A	uc002rlk.3	+	6	1717	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K		NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	479						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					TGGCCTGATTGAGAAGAAGCG	0.413													12	36					0	0	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873734	48873734	+	Silent	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:48873734A>G	uc010yol.1	+	5	2549	c.2502A>G	c.(2500-2502)CCA>CCG	p.P834P	STON1-GTF2A1L_uc002rwp.1_Silent_p.P881P|GTF2A1L_uc002rws.1_Silent_p.P177P|GTF2A1L_uc010yom.1_Silent_p.P143P|GTF2A1L_uc002rwt.2_Silent_p.P177P	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	834					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AATTGAATCCATGGTCTCTTC	0.428													39	32					0	0	0	0
FAM136A	84908	broad.mit.edu	37	2	70527991	70527991	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:70527991C>T	uc002sgq.3	-	2	286	c.209G>A	c.(208-210)AGT>AAT	p.S70N	FAM136A_uc010fdp.2_RNA	NM_032822	NP_116211	Q96C01	F136A_HUMAN	hypothetical protein LOC84908	70						mitochondrion	protein binding				0						CTCCAGCTCACTGGTGACCAA	0.522													65	145					0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71909661	71909661	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:71909661C>A	uc002sie.2	+	54	6434	c.6058C>A	c.(6058-6060)CGC>AGC	p.R2020S	DYSF_uc010feg.2_Missense_Mutation_p.R2051S|DYSF_uc010feh.2_Missense_Mutation_p.R2027S|DYSF_uc002sig.3_Missense_Mutation_p.R2006S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R2041S|DYSF_uc010fef.2_Missense_Mutation_p.R2058S|DYSF_uc010fei.2_Missense_Mutation_p.R2037S|DYSF_uc010fek.2_Missense_Mutation_p.R2038S|DYSF_uc010fej.2_Missense_Mutation_p.R2028S|DYSF_uc010fel.2_Missense_Mutation_p.R2007S|DYSF_uc010feo.2_Missense_Mutation_p.R2052S|DYSF_uc010fem.2_Missense_Mutation_p.R2042S|DYSF_uc010fen.2_Missense_Mutation_p.R2059S|DYSF_uc002sif.2_Missense_Mutation_p.R2021S|DYSF_uc010yqy.1_Missense_Mutation_p.R901S|DYSF_uc010yqz.1_Missense_Mutation_p.R781S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	2020	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGCTTCCAGGCGCCCCGACAC	0.522													34	99					1.71298e-08	4.96595e-08	1	0
SLC4A5	57835	broad.mit.edu	37	2	74452068	74452068	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:74452068C>A	uc002sko.1	-	24	3195	c.3193G>T	c.(3193-3195)GAC>TAC	p.D1065Y	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.D1049Y|SLC4A5_uc010ffc.1_Missense_Mutation_p.D968Y|SLC4A5_uc002skp.1_Missense_Mutation_p.D947Y|SLC4A5_uc002sks.1_Silent_p.T956T	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	1065	Extracellular (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						CAGGCCAGGTCGTGCTGGGAA	0.473													36	95					2.04263e-09	6.18041e-09	1	0
FAM176A	84141	broad.mit.edu	37	2	75745218	75745218	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:75745218G>T	uc002sni.2	-	3	527	c.49C>A	c.(49-51)CTC>ATC	p.L17I	FAM176A_uc002snj.1_Missense_Mutation_p.L4I|FAM176A_uc002snk.1_Missense_Mutation_p.L17I	NM_001135032	NP_001128504	Q9H8M9	F176A_HUMAN	family with sequence similarity 176, member A	17	Necessary for the localization and biological activity.				apoptosis|autophagy	endoplasmic reticulum membrane|integral to membrane|lysosomal membrane|plasma membrane					0						ATGTTGCTGAGCAAAGCCATC	0.602													40	33					5.48756e-27	2.01211e-26	1	0
CTNNA2	1496	broad.mit.edu	37	2	80846291	80846291	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:80846291A>T	uc010ysh.1	+	17	2517	c.2512A>T	c.(2512-2514)ACC>TCC	p.T838S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysi.1_Intron|CTNNA2_uc010ysj.1_Intron	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	838					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TCAACTTTCTACCCACCTCCC	0.443													8	6					0	0	0	0
Unknown	0	broad.mit.edu	37	2	89161166	89161166	+	RNA	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:89161166G>T	uc010ytr.1	-	212		c.9124C>A			uc002sti.1_5'Flank|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		ATGTTCCCCAGGACATTTCTG	0.393													22	29					1.2644e-06	3.49344e-06	1	0
Unknown	0	broad.mit.edu	37	2	90249169	90249169	+	RNA	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:90249169C>A	uc010fhm.2	+	28		c.3712C>A								Parts of antibodies, mostly variable regions.																		GACAGAGTCACCATCACTTGC	0.473													85	125					9.11151e-29	3.37241e-28	1	0
GPR45	11250	broad.mit.edu	37	2	105858978	105858978	+	Silent	SNP	G	A	A	rs141451236		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:105858978G>A	uc002tco.1	+	1	779	c.663G>A	c.(661-663)ACG>ACA	p.T221T		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	221	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						TCCTCAACACGGTCCGCAAGA	0.677													29	56					0	0	0	0
MERTK	10461	broad.mit.edu	37	2	112754924	112754924	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:112754924C>T	uc002thk.1	+	10	1597	c.1475C>T	c.(1474-1476)TCA>TTA	p.S492L	MERTK_uc002thl.1_Missense_Mutation_p.S316L	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	492	Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GCCCCCTCTTCAACTCCGGCG	0.443													87	165					0	0	0	0
DPP10	57628	broad.mit.edu	37	2	116534814	116534814	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:116534814C>A	uc002tla.1	+	14	1709	c.1252C>A	c.(1252-1254)CTG>ATG	p.L418M	DPP10_uc002tlb.1_Missense_Mutation_p.L368M|DPP10_uc002tlc.1_Missense_Mutation_p.L414M|DPP10_uc002tle.2_Missense_Mutation_p.L422M|DPP10_uc002tlf.1_Missense_Mutation_p.L411M	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	418	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CGTGCGGCATCTGACATCAGG	0.378													9	20					3.86212e-05	0.000102612	1	0
DDX18	8886	broad.mit.edu	37	2	118582663	118582663	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:118582663G>T	uc002tlh.1	+	9	1453	c.1354G>T	c.(1354-1356)GTC>TTC	p.V452F		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	452	Helicase C-terminal.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						TGATTTGCCCGTCTTGGCCAT	0.388													48	70					2.13883e-14	6.91594e-14	1	0
YSK4	80122	broad.mit.edu	37	2	135739048	135739048	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:135739048A>G	uc002tue.1	-	9	3294	c.3263T>C	c.(3262-3264)GTA>GCA	p.V1088A	YSK4_uc002tuf.1_Missense_Mutation_p.V270A|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.V975A|YSK4_uc010zbg.1_Missense_Mutation_p.V220A|YSK4_uc002tuh.3_Missense_Mutation_p.V816A|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1088	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CACCTGTTTTACAGCTATTAG	0.353													33	49					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141816540	141816540	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:141816540G>T	uc002tvj.1	-	9	2292	c.1320C>A	c.(1318-1320)AAC>AAA	p.N440K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	440	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATTAAATCGGTTTATCCTTA	0.323										TSP Lung(27;0.18)			23	58					1.55795e-14	5.05152e-14	1	0
PABPC1P2	728773	broad.mit.edu	37	2	147345990	147345990	+	Silent	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:147345990T>A	uc002twf.3	+	1	1366	c.450T>A	c.(448-450)GGT>GGA	p.G150G		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						TGGAGGGTGGTTGCAGCAAAA	0.403													13	20					0	0	0	0
CYTIP	9595	broad.mit.edu	37	2	158272457	158272457	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:158272457C>A	uc002tzj.1	-	8	884	c.812G>T	c.(811-813)AGG>ATG	p.R271M	CYTIP_uc010zcl.1_Missense_Mutation_p.R165M	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	271	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GAAGGCACCCCTGCTGGAGTC	0.532													23	48					2.98393e-07	8.36211e-07	1	0
SLC4A10	57282	broad.mit.edu	37	2	162761344	162761344	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:162761344G>T	uc002ubx.3	+	14	1860	c.1676G>T	c.(1675-1677)GGT>GTT	p.G559V	SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.G529V|SLC4A10_uc010zcs.1_Missense_Mutation_p.G540V	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	559	Helical; (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TCTCTCTTTGGTGGACAGCCT	0.393													47	62					2.55665e-31	9.61397e-31	1	0
KCNH7	90134	broad.mit.edu	37	2	163292054	163292054	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:163292054G>T	uc002uch.1	-	8	1820	c.1608C>A	c.(1606-1608)CGC>CGA	p.R536R	KCNH7_uc002uci.2_Silent_p.R529R	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	536	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCCTGGCCACGCGCACAAGAC	0.453													18	24					3.52763e-06	9.61116e-06	1	0
SCN3A	6328	broad.mit.edu	37	2	165947639	165947639	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:165947639G>C	uc002ucx.2	-	28	5516	c.5024C>G	c.(5023-5025)TCC>TGC	p.S1675C	SCN3A_uc010zcy.1_Missense_Mutation_p.S158C|SCN3A_uc002ucy.2_Missense_Mutation_p.S1626C|SCN3A_uc002ucz.2_Missense_Mutation_p.S1626C	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1675	Helical; Name=S5 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GGCAAAGTTGGACATCCCAAA	0.443													67	99					0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168106105	168106105	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:168106105C>A	uc002udx.2	+	8	8221	c.8203C>A	c.(8203-8205)CAA>AAA	p.Q2735K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q2560K|XIRP2_uc010fpq.2_Missense_Mutation_p.Q2513K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.Q81K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2560					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCATAAACAGCAATCTGAGAT	0.343													21	39					2.4624e-09	7.39347e-09	1	0
LRP2	4036	broad.mit.edu	37	2	170055350	170055350	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:170055350A>G	uc002ues.2	-	45	8737	c.8524T>C	c.(8524-8526)TGT>CGT	p.C2842R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2842	LDL-receptor class A 19.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCTCCGTCACACAAATAAACG	0.368													12	28					0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170058313	170058313	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:170058313G>T	uc002ues.2	-	44	8490	c.8277C>A	c.(8275-8277)CGC>CGA	p.R2759R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2759	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGTAATCACAGCGGTAAGAGT	0.498													17	39					3.45872e-05	9.2102e-05	1	0
TTN	7273	broad.mit.edu	37	2	179614488	179614488	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:179614488G>T	uc002unb.2	-	46	12863	c.12639C>A	c.(12637-12639)AGC>AGA	p.S4213R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAATTGGTGGCTACAATTAA	0.348													14	29					7.93312e-07	2.19701e-06	1	0
TTN	7273	broad.mit.edu	37	2	179659867	179659867	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:179659867G>T	uc010zfg.1	-	7	1251	c.1027C>A	c.(1027-1029)CCC>ACC	p.P343T	TTN_uc010zfh.1_Missense_Mutation_p.P343T|TTN_uc010zfi.1_Missense_Mutation_p.P343T|TTN_uc010zfj.1_Missense_Mutation_p.P343T|TTN_uc002unb.2_Missense_Mutation_p.P343T|TTN_uc010frg.1_Missense_Mutation_p.P17T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	343							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCAAGGGGGAGGCACTTCA	0.547													30	46					1.38854e-25	5.02865e-25	1	0
SSFA2	6744	broad.mit.edu	37	2	182783380	182783380	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:182783380C>G	uc002uoi.2	+	12	3165	c.2843C>G	c.(2842-2844)TCA>TGA	p.S948*	SSFA2_uc002uoh.2_Nonsense_Mutation_p.S948*|SSFA2_uc002uoj.2_Nonsense_Mutation_p.S948*|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Nonsense_Mutation_p.S795*|SSFA2_uc002uol.2_Nonsense_Mutation_p.S795*|SSFA2_uc002uom.2_Nonsense_Mutation_p.S416*	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	948						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			ACTCAGAAATCATCTGTTCTA	0.313													30	46					0	0	0	0
NCKAP1	10787	broad.mit.edu	37	2	183818048	183818048	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:183818048C>A	uc002upc.2	-	21	2567	c.2165G>T	c.(2164-2166)GGG>GTG	p.G722V	NCKAP1_uc002upb.2_Missense_Mutation_p.G728V	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	722					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CATAGTCATCCCAACAATTGA	0.363													15	27					4.7546e-09	1.40255e-08	1	0
COL5A2	1290	broad.mit.edu	37	2	189909940	189909940	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:189909940C>A	uc002uqk.2	-	47	3603	c.3328G>T	c.(3328-3330)GGA>TGA	p.G1110*	COL5A2_uc010frx.2_Nonsense_Mutation_p.G686*	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1110					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCAGGTGGTCCTATAGGACCC	0.323													12	17					2.62699e-14	8.44799e-14	1	0
SDPR	8436	broad.mit.edu	37	2	192701281	192701281	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:192701281C>G	uc002utb.2	-	2	976	c.646G>C	c.(646-648)GAA>CAA	p.E216Q		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	216	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GCACTGTCTTCCAGGGCCTCC	0.502													47	79					0	0	0	0
AOX1	316	broad.mit.edu	37	2	201476122	201476122	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:201476122T>C	uc002uvx.2	+	13	1270	c.1169T>C	c.(1168-1170)ATT>ACT	p.I390T	AOX1_uc010zhf.1_Intron|AOX1_uc010fsu.2_Intron	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	390	FAD-binding PCMH-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	AAACGACAGATTCCTTTAAAT	0.398													68	102					0	0	0	0
AOX1	316	broad.mit.edu	37	2	201507394	201507394	+	Missense_Mutation	SNP	G	A	A	rs139407288		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:201507394G>A	uc002uvx.2	+	25	2818	c.2717G>A	c.(2716-2718)CGG>CAG	p.R906Q	AOX1_uc010zhf.1_Missense_Mutation_p.R462Q|AOX1_uc010fsu.2_Missense_Mutation_p.R272Q	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	906					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CTCCGCTGCCGGGGTTGGGCA	0.473													22	37					0	0	0	0
MAP2	4133	broad.mit.edu	37	2	210545497	210545497	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:210545497C>T	uc002vde.1	+	6	648	c.400C>T	c.(400-402)CCT>TCT	p.P134S	MAP2_uc002vdc.1_Missense_Mutation_p.P134S|MAP2_uc002vdd.1_Missense_Mutation_p.P134S|MAP2_uc002vdf.1_Missense_Mutation_p.P134S|MAP2_uc002vdg.1_Missense_Mutation_p.P134S|MAP2_uc002vdh.1_Missense_Mutation_p.P134S|MAP2_uc002vdi.1_Missense_Mutation_p.P134S	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	134					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AGCTAATCTGCCTCCTTCTCC	0.433													88	147					0	0	0	0
ACADL	33	broad.mit.edu	37	2	211057583	211057583	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:211057583C>A	uc002vdz.3	-	10	1372	c.1144G>T	c.(1144-1146)GAC>TAC	p.D382Y		NM_001608	NP_001599	P28330	ACADL_HUMAN	long-chain acyl-CoA dehydrogenase precursor	382					carnitine catabolic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial matrix	long-chain-acyl-CoA dehydrogenase activity|palmitoyl-CoA oxidase activity				0		Renal(323;0.202)		Epithelial(149;0.00631)|Lung(261;0.0438)|LUSC - Lung squamous cell carcinoma(261;0.0466)|all cancers(144;0.0621)		TGTACACAGTCGTAAGCTACA	0.373													8	23					0.00307968	0.0078289	1	0
FN1	2335	broad.mit.edu	37	2	216248799	216248799	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:216248799G>T	uc002vfa.2	-	30	5104	c.4838C>A	c.(4837-4839)ACT>AAT	p.T1613N	FN1_uc002vfb.2_Missense_Mutation_p.T1522N|FN1_uc002vfc.2_Missense_Mutation_p.T1522N|FN1_uc002vfd.2_Missense_Mutation_p.T1613N|FN1_uc002vfe.2_Missense_Mutation_p.T1522N|FN1_uc002vff.2_Missense_Mutation_p.T1522N|FN1_uc002vfg.2_Missense_Mutation_p.T1522N|FN1_uc002vfh.2_Missense_Mutation_p.T1522N|FN1_uc002vfi.2_Missense_Mutation_p.T1613N|FN1_uc002vfj.2_Missense_Mutation_p.T1613N|FN1_uc002vez.2_Translation_Start_Site|FN1_uc010zjp.1_Missense_Mutation_p.T240N|FN1_uc010fvc.1_5'Flank|FN1_uc010fvd.1_5'Flank	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCACGGCCAGTGACAGCATA	0.498													37	57					4.46736e-08	1.28246e-07	1	0
CYP27A1	1593	broad.mit.edu	37	2	219677281	219677281	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:219677281G>T	uc002viz.3	+	4	1087	c.653G>T	c.(652-654)TGC>TTC	p.C218F		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	218					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	TCAGCTATTTGCTACATCCTG	0.547													118	155					7.7863e-71	3.04468e-70	1	0
SPHKAP	80309	broad.mit.edu	37	2	228884716	228884716	+	Missense_Mutation	SNP	C	G	G	rs145402025		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:228884716C>G	uc002vpq.2	-	7	901	c.854G>C	c.(853-855)CGA>CCA	p.R285P	SPHKAP_uc002vpp.2_Missense_Mutation_p.R285P|SPHKAP_uc010zlx.1_Missense_Mutation_p.R285P	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	285						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCTGGAGATCGTTCTGTTTT	0.443													73	137					0	0	0	0
CXCR7	57007	broad.mit.edu	37	2	237489774	237489774	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:237489774C>T	uc010fyq.2	+	3	896	c.666C>T	c.(664-666)GCC>GCT	p.A222A	CXCR7_uc002vwd.2_Silent_p.A222A	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	222	Helical; Name=5; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TGGGCTTTGCCGTTCCCTTCT	0.567													52	53					0	0	0	0
MLPH	79083	broad.mit.edu	37	2	238449173	238449173	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:238449173G>T	uc002vwt.2	+	10	1514	c.1287G>T	c.(1285-1287)CCG>CCT	p.P429P	MLPH_uc002vws.2_Silent_p.P286P|MLPH_uc010fyt.1_Silent_p.P401P|MLPH_uc002vwu.2_Silent_p.P401P|MLPH_uc002vwv.2_Silent_p.P361P|MLPH_uc002vww.2_Silent_p.P377P|MLPH_uc002vwx.2_Silent_p.P285P|MLPH_uc010fyu.2_Silent_p.P181P	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	429	Potential.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		AGGCGGACCCGGAGGTAAGAC	0.637													13	9					5.50884e-06	1.49399e-05	1	0
ASB1	51665	broad.mit.edu	37	2	239344391	239344391	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:239344391C>T	uc002vyg.2	+	3	317	c.231C>T	c.(229-231)CTC>CTT	p.L77L		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	77	ANK 2.				intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		GTGGCTGGCTCCCCTGCACAC	0.632													15	23					0	0	0	0
HDAC4	9759	broad.mit.edu	37	2	240029767	240029767	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:240029767C>T	uc002vyk.3	-	15	2868	c.2076G>A	c.(2074-2076)ACG>ACA	p.T692T	HDAC4_uc010fyz.1_Silent_p.T687T|HDAC4_uc010zoa.1_Silent_p.T692T|HDAC4_uc010fza.2_Silent_p.T697T|HDAC4_uc010fyy.2_Silent_p.T649T|HDAC4_uc010znz.1_Silent_p.T575T	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	692	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CCCGGAGGCCCGTCTCCTGCA	0.677													11	20					0	0	0	0
CAPN10	11132	broad.mit.edu	37	2	241534551	241534551	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:241534551C>A	uc002vzk.1	+	7	1292	c.1108C>A	c.(1108-1110)CGG>AGG	p.R370R	CAPN10_uc010zoh.1_Silent_p.R370R|CAPN10_uc002vzl.1_Silent_p.R370R|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Silent_p.R242R|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	370	Domain III 1.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		ATTCTGGCTGCGGGTCTCAGA	0.672													40	48					4.01765e-15	1.32089e-14	1	0
KIF1A	547	broad.mit.edu	37	2	241702653	241702653	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:241702653C>A	uc002vzy.2	-	20	1998	c.1852G>T	c.(1852-1854)GAC>TAC	p.D618Y	KIF1A_uc010fzk.2_Missense_Mutation_p.D627Y|KIF1A_uc002vzz.1_Missense_Mutation_p.D627Y	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	618					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		AAGGCCCAGTCCACAGGCTCA	0.652													9	18					5.4927e-09	1.60819e-08	1	0
TMC2	117532	broad.mit.edu	37	20	2577848	2577848	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr20:2577848C>T	uc002wgf.1	+	10	1143	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	TMC2_uc002wgg.1_Silent_p.F360F|TMC2_uc010zpw.1_Silent_p.F208F|TMC2_uc010zpx.1_Silent_p.F207F	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	376	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GTGACAACTTCACATTCAGCT	0.507													18	33					0	0	0	0
SLC4A11	83959	broad.mit.edu	37	20	3210334	3210334	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr20:3210334G>A	uc002wig.2	-	13	1674	c.1626C>T	c.(1624-1626)GCC>GCT	p.A542A	SLC4A11_uc010zqe.1_Silent_p.A569A|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.A526A	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	542	Extracellular (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						CGTTGAGGCTGGCGCCGAGGC	0.612													26	26					0	0	0	0
SLC17A9	63910	broad.mit.edu	37	20	61594696	61594696	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr20:61594696C>T	uc002yea.3	+	6	884	c.700C>T	c.(700-702)CGG>TGG	p.R234W	SLC17A9_uc002ydz.3_Missense_Mutation_p.R228W|SLC17A9_uc011aap.1_Missense_Mutation_p.R254W	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	234					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CCCCTGGAGACGGCTCTTCCG	0.647													16	19					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	10910382	10910382	+	Silent	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:10910382T>C	uc002yip.1	-	22	1742	c.1374A>G	c.(1372-1374)ACA>ACG	p.T458T	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.T440T|TPTE_uc002yir.1_Silent_p.T420T|TPTE_uc010gkv.1_Silent_p.T320T	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	458	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTTGTCTGTTGTAATGTTAT	0.338													6	107					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	10969098	10969098	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:10969098G>T	uc002yip.1	-	7	518	c.150C>A	c.(148-150)GCC>GCA	p.A50A	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Intron|TPTE_uc002yir.1_Intron|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	50					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTGACACCCGGGCTGCTCCTT	0.328													16	101					3.41278e-10	1.04334e-09	1	0
DSCR9	257203	broad.mit.edu	37	21	38593591	38593591	+	RNA	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:38593591C>A	uc010gnk.2	+	1		c.703C>A								Homo sapiens mRNA, complete cds.												0						GATCCACCTCCCGCCAGGGTG	0.682													18	31					3.32936e-07	9.28591e-07	1	0
PFKL	5211	broad.mit.edu	37	21	45732884	45732884	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:45732884C>T	uc002zel.2	+	5	510	c.451C>T	c.(451-453)CGG>TGG	p.R151W	PFKL_uc002zek.2_Missense_Mutation_p.R198W|PFKL_uc011afd.1_Missense_Mutation_p.R198W	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	151			R -> W.		fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		GACTACAGCCCGGACCTACTC	0.647													18	37					0	0	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978296	45978296	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:45978296C>T	uc002zfj.1	-	1	348	c.303G>A	c.(301-303)GTG>GTA	p.V101V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	101	7.|18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						agcagacaggcacgcagcagg	0.189													71	126					0	0	0	0
COL18A1	80781	broad.mit.edu	37	21	46912603	46912603	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:46912603C>A	uc011afs.1	+	23	3456	c.3435C>A	c.(3433-3435)GGC>GGA	p.G1145G	COL18A1_uc002zhg.2_Silent_p.G730G|COL18A1_uc002zhi.2_Silent_p.G910G	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1145	Triple-helical region 5 (COL5).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TTCCCCAGGGCCGGCCGGGTT	0.701													25	48					7.41945e-09	2.16692e-08	1	0
PIWIL3	440822	broad.mit.edu	37	22	25119105	25119105	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr22:25119105C>A	uc003abd.1	-	19	2793	c.2376G>T	c.(2374-2376)AGG>AGT	p.R792S	PIWIL3_uc011ajx.1_Missense_Mutation_p.R674S|PIWIL3_uc011ajy.1_Missense_Mutation_p.R674S|PIWIL3_uc010gut.1_Missense_Mutation_p.R783S	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	792	Piwi.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						ACCATTCATTCCTAGTCAACT	0.338													26	8					5.45727e-16	1.81446e-15	1	0
SMCR7L	54471	broad.mit.edu	37	22	39910115	39910115	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr22:39910115C>T	uc003axx.2	+	6	1677	c.1179C>T	c.(1177-1179)GCC>GCT	p.A393A	SMCR7L_uc003axw.2_Silent_p.A393A|SMCR7L_uc010gxz.1_Silent_p.A215A|SMCR7L_uc003axy.2_Silent_p.A215A	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	393						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					TCCACTTGGCCCAGGAGGAGG	0.592											OREG0026577	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	11					0	0	0	0
SLC6A11	6538	broad.mit.edu	37	3	10858101	10858101	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:10858101G>C	uc003bvz.2	+	1	185	c.151G>C	c.(151-153)GGC>CGC	p.G51R	SLC6A11_uc003bvy.1_Missense_Mutation_p.G51R	NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	51	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CCACGAGCGCGGCCACTGGAA	0.562													3	4					0	0	0	0
XIRP1	165904	broad.mit.edu	37	3	39229740	39229740	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:39229740C>A	uc003cjk.1	-	2	1418	c.1197G>T	c.(1195-1197)GTG>GTT	p.V399V	XIRP1_uc003cji.2_Silent_p.V399V|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	399							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTAGGTGACCCACTTGGACCT	0.592													60	53					1.27862e-28	4.71766e-28	1	0
ITIH3	3699	broad.mit.edu	37	3	52829637	52829637	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:52829637G>T	uc003dfv.2	+	2	148	c.112G>T	c.(112-114)GGG>TGG	p.G38W	ITIH3_uc011bek.1_Missense_Mutation_p.G38W	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	38	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CCTCCCGGAAGGGGTAAGAAC	0.567													5	10					0.000157383	0.000411645	1	0
C3orf67	200844	broad.mit.edu	37	3	58817503	58817503	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:58817503T>C	uc003dkt.1	-	13	1740	c.1331A>G	c.(1330-1332)CAT>CGT	p.H444R	C3orf67_uc003dkr.1_RNA|C3orf67_uc003dks.1_Missense_Mutation_p.H385R|uc003dku.1_Intron	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		ACTCAGGCCATGGGAGGTCCC	0.542													27	13					0	0	0	0
IFT57	55081	broad.mit.edu	37	3	107938307	107938307	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:107938307C>A	uc003dwx.3	-	2	573	c.325G>T	c.(325-327)GAT>TAT	p.D109Y		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	109					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TTAGGGTCATCATATTCTTGA	0.408													19	11					6.94344e-10	2.1063e-09	1	0
VEPH1	79674	broad.mit.edu	37	3	157146252	157146252	+	Silent	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:157146252T>C	uc003fbj.1	-	5	872	c.555A>G	c.(553-555)TTA>TTG	p.L185L	VEPH1_uc003fbk.1_Silent_p.L185L|VEPH1_uc010hvu.1_Silent_p.L185L	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	185						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			ACACAGCAGGTAACACTCTCA	0.428													40	11					0	0	0	0
SI	6476	broad.mit.edu	37	3	164704993	164704993	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:164704993G>A	uc003fei.2	-	45	5192	c.5130C>T	c.(5128-5130)CTC>CTT	p.L1710L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1710	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CAGCAACAATGAGCTTCATGT	0.348										HNSCC(35;0.089)			51	16					0	0	0	0
SI	6476	broad.mit.edu	37	3	164741485	164741485	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:164741485G>T	uc003fei.2	-	26	3034	c.2972C>A	c.(2971-2973)TCA>TAA	p.S991*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	991	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACCCATGGATGAATAGCGAGC	0.413										HNSCC(35;0.089)			17	26					3.45872e-05	9.2102e-05	1	0
SI	6476	broad.mit.edu	37	3	164766984	164766984	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:164766984A>G	uc003fei.2	-	15	1708	c.1646T>C	c.(1645-1647)GTG>GCG	p.V549A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	549	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCAGTTCTGCACAGCATCCAT	0.338										HNSCC(35;0.089)			14	27					0	0	0	0
TRA2B	6434	broad.mit.edu	37	3	185636179	185636179	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:185636179C>A	uc003fpv.2	-	8	1106	c.830G>T	c.(829-831)CGT>CTT	p.R277L	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.R177L|TRA2B_uc003fpw.2_Missense_Mutation_p.R257L	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	277	Arg/Ser-rich (RS2 domain).				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						AGATCTGGAACGTGATCTGTA	0.368													21	50					1.96292e-10	6.01656e-10	1	0
KNG1	3827	broad.mit.edu	37	3	186450367	186450367	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:186450367G>T	uc011bsa.1	+	7	1046	c.834G>T	c.(832-834)CTG>CTT	p.L278L	KNG1_uc003fqr.2_Silent_p.L278L	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	278	Cystatin 3.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	GCCCAGAGCTGGAGGAGACAC	0.443													10	110					4.68919e-08	1.34287e-07	1	0
OSTN	344901	broad.mit.edu	37	3	190936696	190936696	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:190936696G>A	uc011bsn.1	+	2	263	c.263G>A	c.(262-264)GGG>GAG	p.G88E		NM_198184	NP_937827	P61366	OSTN_HUMAN	osteocrin precursor	88					cell differentiation|multicellular organismal development|ossification		hormone activity			pancreas(1)|skin(1)	2	all_cancers(143;6.79e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000254)		TCTGGTTTTGGGTCTCCCCTT	0.398													23	26					0	0	0	0
LOC220729	220729	broad.mit.edu	37	3	197348668	197348668	+	RNA	SNP	C	G	G	rs79940815	by1000genomes	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:197348668C>G	uc011bug.1	-	4		c.423G>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						ACTTGAGGCTCTGTCCACCAA	0.488													4	93					0	0	0	0
LOC220729	220729	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	G	G	rs144273946	by1000genomes	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:197348674A>G	uc011bug.1	-	4		c.417T>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						GGCTCTGTCCACCAAATGCAC	0.478													4	94					0	0	0	0
STK32B	55351	broad.mit.edu	37	4	5458560	5458560	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:5458560G>A	uc003gih.1	+	8	757	c.693G>A	c.(691-693)ACG>ACA	p.T231T	STK32B_uc010ida.1_Silent_p.T184T	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	231	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ACTCGGTCACGCCCATCGATG	0.532													10	6					0	0	0	0
GABRA2	2555	broad.mit.edu	37	4	46252554	46252554	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:46252554G>C	uc003gxc.3	-	9	1800	c.1127C>G	c.(1126-1128)CCG>CGG	p.P376R	GABRA2_uc010igc.2_Missense_Mutation_p.P376R|GABRA2_uc011bzc.1_Missense_Mutation_p.P381R	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	376	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGAAAGATTCGGGGCATAATT	0.418													60	35					0	0	0	0
UGT2A1	10941	broad.mit.edu	37	4	70513215	70513215	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:70513215C>T	uc003hem.3	-	1	211	c.148G>A	c.(148-150)GTG>ATG	p.V50M	UGT2A1_uc011caq.1_Missense_Mutation_p.V50M|UGT2A1_uc010ihu.2_Missense_Mutation_p.V50M|UGT2A1_uc010iht.2_Missense_Mutation_p.V50M	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	50	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AGGACAGTCACATTATGCTCC	0.393													17	24					0	0	0	0
ODAM	54959	broad.mit.edu	37	4	71068636	71068636	+	Splice_Site	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:71068636T>C	uc003hfc.2	+	9	827	c.810_splice	c.e9+2	p.K270_splice		NM_017855	NP_060325	A1E959	ODAM_HUMAN	odontogenic ameloblast-associated protein						biomineral tissue development|odontogenesis of dentine-containing tooth	fibril				ovary(3)|large_intestine(1)	4						GAAGAGAAGGTAGAGTCATGA	0.353													13	11					0	0	0	0
SMR3A	26952	broad.mit.edu	37	4	71232484	71232484	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:71232484C>A	uc003hfg.1	+	3	259	c.178C>A	c.(178-180)CCA>ACA	p.P60T	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	60	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				ACCCTATGGTCCAGGGAGATT	0.557													17	90					2.35188e-11	7.32319e-11	1	0
SHROOM3	57619	broad.mit.edu	37	4	77660612	77660612	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:77660612A>G	uc011cbx.1	+	5	2239	c.1286A>G	c.(1285-1287)GAG>GGG	p.E429G	SHROOM3_uc011cbz.1_Missense_Mutation_p.E253G|SHROOM3_uc003hkf.1_Missense_Mutation_p.E304G|SHROOM3_uc003hkg.2_Missense_Mutation_p.E207G	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	429					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CCATTCATAGAGGAGCAGCTG	0.577													21	47					0	0	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99337959	99337959	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:99337959A>T	uc003htx.3	+	8	1017	c.827A>T	c.(826-828)CAA>CTA	p.Q276L	RAP1GDS1_uc003htw.3_Missense_Mutation_p.Q277L|RAP1GDS1_uc003htv.3_Missense_Mutation_p.Q277L|RAP1GDS1_uc003htz.3_Missense_Mutation_p.Q227L|RAP1GDS1_uc003hty.3_Missense_Mutation_p.Q228L|RAP1GDS1_uc003hua.3_Missense_Mutation_p.Q185L	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	276							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		ATTGTTCAGCAAAAAGTGGAT	0.363			T	NUP98	T-ALL								22	11					0	0	0	0
FBXW7	55294	broad.mit.edu	37	4	153247288	153247288	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:153247288C>A	uc003ims.2	-	10	1663	c.1514G>T	c.(1513-1515)CGC>CTC	p.R505L	FBXW7_uc011cii.1_Missense_Mutation_p.R505L|FBXW7_uc003imt.2_Missense_Mutation_p.R505L|FBXW7_uc011cih.1_Missense_Mutation_p.R329L|FBXW7_uc003imq.2_Missense_Mutation_p.R425L|FBXW7_uc003imr.2_Missense_Mutation_p.R387L	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	505	WD 4.		R -> L (in an ovarian cancer cell line).		interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.R505C(35)|p.R505L(7)|p.R505G(2)|p.R505H(2)|p.R266L(1)|p.R505S(1)|p.R505P(1)|p.R425L(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TTGAACACAGCGGACTGCTGC	0.468			Mis|N|D|F		colorectal|endometrial|T-ALL								37	26					4.11147e-13	1.315e-12	1	0
DCHS2	54798	broad.mit.edu	37	4	155161859	155161859	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:155161859G>T	uc003inw.2	-	23	5824	c.5824C>A	c.(5824-5826)CAG>AAG	p.Q1942K		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1942	Cadherin 17.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CCAGTGTTCTGATCAATAGCA	0.383													26	24					7.4402e-23	2.62189e-22	1	0
FSTL5	56884	broad.mit.edu	37	4	162841698	162841698	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:162841698A>T	uc003iqh.2	-	4	703	c.267T>A	c.(265-267)TGT>TGA	p.C89*	FSTL5_uc003iqi.2_Nonsense_Mutation_p.C88*|FSTL5_uc010iqv.2_Nonsense_Mutation_p.C88*	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	89	Kazal-like.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		AAAGGTCCATACAGGCACATT	0.458													13	5					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11082811	11082811	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:11082811T>C	uc003jfa.1	-	16	2930	c.2785A>G	c.(2785-2787)ATC>GTC	p.I929V	CTNND2_uc010itt.2_Missense_Mutation_p.I838V|CTNND2_uc011cmy.1_Missense_Mutation_p.I592V|CTNND2_uc011cmz.1_Missense_Mutation_p.I496V|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.I521V	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	929					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AACATACCGATGAGCTCCTTA	0.507													137	104					0	0	0	0
CDH9	1007	broad.mit.edu	37	5	26903843	26903843	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:26903843G>A	uc003jgs.1	-	6	1071	c.902C>T	c.(901-903)GCA>GTA	p.A301V	CDH9_uc010iug.2_Missense_Mutation_p.A301V	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	301	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CTCCATTTCTGCATTTTCCCC	0.413													84	176					0	0	0	0
RXFP3	51289	broad.mit.edu	37	5	33937868	33937868	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:33937868C>A	uc003jic.1	+	1	1380	c.1023C>A	c.(1021-1023)CCC>CCA	p.P341P		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	341	Helical; Name=6; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						GTTGGCTGCCCAACCAGGCGC	0.602													36	70					6.90743e-12	2.16801e-11	1	0
SPEF2	79925	broad.mit.edu	37	5	35654677	35654677	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:35654677C>A	uc003jjo.2	+	7	938	c.827C>A	c.(826-828)ACA>AAA	p.T276K	SPEF2_uc003jjn.1_Missense_Mutation_p.T276K|SPEF2_uc003jjq.3_Missense_Mutation_p.T276K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	276					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCAGGCCAGACAACCACCGAT	0.348													21	42					5.35356e-11	1.65384e-10	1	0
SPEF2	79925	broad.mit.edu	37	5	35727888	35727888	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:35727888C>A	uc003jjo.2	+	21	3137	c.3026C>A	c.(3025-3027)TCA>TAA	p.S1009*	SPEF2_uc003jjp.1_Nonsense_Mutation_p.S495*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1009					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGCCAGGATCAGAAGAATGG	0.428													93	62					3.37413e-40	1.30208e-39	1	0
FBXO4	26272	broad.mit.edu	37	5	41939628	41939628	+	Silent	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:41939628A>G	uc003jmq.2	+	6	1040	c.984A>G	c.(982-984)TTA>TTG	p.L328L	FBXO4_uc003jmr.2_Intron	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	328					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				TGTTGGTTTTATCTTGTATTT	0.393													57	145					0	0	0	0
PDE4D	5144	broad.mit.edu	37	5	58287799	58287799	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:58287799T>A	uc003jsa.2	-	8	1220	c.1048A>T	c.(1048-1050)ACT>TCT	p.T350S	PDE4D_uc003jrx.2_Missense_Mutation_p.T214S|PDE4D_uc003jry.2_Missense_Mutation_p.T48S|PDE4D_uc003jrz.2_Missense_Mutation_p.T286S|PDE4D_uc003jsb.2_Missense_Mutation_p.T289S|PDE4D_uc003jrt.2_Missense_Mutation_p.T48S|PDE4D_uc003jru.2_Missense_Mutation_p.T126S|PDE4D_uc003jrv.2_Missense_Mutation_p.T220S|PDE4D_uc003jrw.2_Missense_Mutation_p.T228S|PDE4D_uc003jrs.2_Missense_Mutation_p.T59S	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	350					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	TCCTTCTGAGTTGGAGAAGGA	0.318													7	1					0	0	0	0
Unknown	0	broad.mit.edu	37	5	68765939	68765939	+	RNA	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:68765939T>C	uc003jwt.1	+	1		c.260T>C								full-length cDNA clone CS0DJ015YI13 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).																		CAGAAGGATGTTCCTTCAGGA	0.373													8	4					0	0	0	0
SERINC5	256987	broad.mit.edu	37	5	79498804	79498804	+	Silent	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:79498804G>C	uc003kgj.2	-	2	225	c.96C>G	c.(94-96)TCC>TCG	p.S32S	SERINC5_uc003kgk.2_Silent_p.S32S|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Silent_p.S32S|SERINC5_uc011ctj.1_Silent_p.S32S	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	32	Extracellular (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GGGTGCTGAGGGACTGCCGAA	0.552													7	5					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	89933676	89933676	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:89933676A>T	uc003kju.2	+	11	2247	c.2151A>T	c.(2149-2151)TTA>TTT	p.L717F	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	717	Calx-beta 5.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTTGTTTTTATCTGGGCAAA	0.418													23	14					0	0	0	0
APC	324	broad.mit.edu	37	5	112175215	112175215	+	Silent	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:112175215A>G	uc010jby.2	+	16	4304	c.3924A>G	c.(3922-3924)AAA>AAG	p.K1308K	APC_uc011cvt.1_Silent_p.K1290K|APC_uc003kpz.3_Silent_p.K1308K|APC_uc003kpy.3_Silent_p.K1308K|APC_uc010jbz.2_Silent_p.K1025K|APC_uc010jca.2_Silent_p.K608K	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1308	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.E1309fs*6(50)|p.E1309fs*4(32)|p.I1307fs*6(12)|p.K1308*(6)|p.?(1)|p.E1309fs*5(1)|p.K1192fs*3(1)|p.K1308E(1)|p.K1308fs*4(1)|p.K1308fs*6(1)|p.I1307fs*13(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CAGAAATAAAAGAAAAGATTG	0.428		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			30	6					0	0	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129037215	129037215	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:129037215A>T	uc003kvb.1	+	20	3071	c.3071A>T	c.(3070-3072)AAG>ATG	p.K1024M	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1024	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ATTGGGCCCAAGCCCGCCTCT	0.577													18	17					0	0	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176493	140176493	+	Silent	SNP	C	T	T	rs140366950		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:140176493C>T	uc003lhd.2	+	1	2050	c.1944C>T	c.(1942-1944)CTC>CTT	p.L648L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L648L|PCDHA2_uc011czy.1_Silent_p.L648L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	648	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCCTACTCGTGCTGGTGA	0.652													48	16					0	0	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788253	140788253	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:140788253A>T	uc003lkj.1	+	1	484	c.484A>T	c.(484-486)ATA>TTA	p.I162L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.I162L	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	162	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATCCTGATATAAACATAAA	0.363													12	5					0	0	0	0
DOCK2	1794	broad.mit.edu	37	5	169461490	169461490	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:169461490G>A	uc003maf.2	+	35	3635	c.3555G>A	c.(3553-3555)CTG>CTA	p.L1185L	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.L677L	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1185	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAGAAGCTGCTGGATTACC	0.587													23	13					0	0	0	0
TXNDC5	81567	broad.mit.edu	37	6	7884653	7884653	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:7884653G>A	uc003mxv.2	-	9	1147	c.1115C>T	c.(1114-1116)GCG>GTG	p.A372V	TXNDC5_uc003mxw.2_Missense_Mutation_p.A329V|TXNDC5_uc010jnz.2_Missense_Mutation_p.A264V	NM_030810	NP_110437	Q8NBS9	TXND5_HUMAN	thioredoxin domain containing 5 isoform 1	372	Thioredoxin 3.				anti-apoptosis|cell redox homeostasis|cellular membrane organization|glycerol ether metabolic process|post-Golgi vesicle-mediated transport	endoplasmic reticulum lumen|lysosomal lumen	electron carrier activity|isomerase activity|protein disulfide oxidoreductase activity				0	Ovarian(93;0.0398)					CTTGACCCCCGCCAGACCAGG	0.488													41	104					0	0	0	0
OR14J1	442191	broad.mit.edu	37	6	29274874	29274874	+	Silent	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:29274874C>G	uc011dln.1	+	1	408	c.408C>G	c.(406-408)CCC>CCG	p.P136P		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTATGGATCCCCGTGCCTGTA	0.502													58	136					0	0	0	0
OR10C1	442194	broad.mit.edu	37	6	29408338	29408338	+	Silent	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:29408338T>A	uc011dlp.1	+	1	546	c.546T>A	c.(544-546)CCT>CCA	p.P182P	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGATCCAGCCTGTCCTGCAGC	0.582													62	168					0	0	0	0
LOC285830	285830	broad.mit.edu	37	6	29718864	29718864	+	5'Flank	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:29718864G>A	uc003nnp.2	-						LOC285830_uc011dlz.1_5'Flank|LOC285830_uc003rsi.3_5'Flank|IFITM4P_uc003nnr.2_RNA	NR_026972				Homo sapiens cDNA FLJ35429 fis, clone SMINT2002126.												0						GCTGGGGTTGGGGGGCGGGGG	0.602													20	19					0	0	0	0
TRIM39	56658	broad.mit.edu	37	6	30297214	30297214	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:30297214C>T	uc010jrz.2	+	3	432	c.120C>T	c.(118-120)GTC>GTT	p.V40V	HCG18_uc003npx.2_5'Flank|HCG18_uc003npy.2_5'Flank|TRIM39_uc003npz.2_Silent_p.V40V|TRIM39_uc003nqb.2_Silent_p.V40V|TRIM39_uc003nqc.2_Silent_p.V40V|TRIM39_uc010jsa.1_Silent_p.V40V	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	40	RING-type.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						AGGAACCTGTCATCATTGAGT	0.562													141	114					0	0	0	0
DHX16	8449	broad.mit.edu	37	6	30627269	30627269	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:30627269T>A	uc003nqz.2	-	12	2199	c.1987A>T	c.(1987-1989)ACA>TCA	p.T663S	DHX16_uc003nqy.2_Missense_Mutation_p.T182S|DHX16_uc011dmo.1_Missense_Mutation_p.T603S	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	663	Helicase C-terminal.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CCAGGTGGTGTGGGCTGGAAG	0.582													9	7					0	0	0	0
MICB	4277	broad.mit.edu	37	6	31477636	31477636	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:31477636C>G	uc003ntn.3	+	6	1218	c.1102C>G	c.(1102-1104)CAG>GAG	p.Q368E	MICB_uc011dnm.1_Missense_Mutation_p.Q336E|MICB_uc003nto.3_Missense_Mutation_p.Q325E	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	368	Cytoplasmic (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						GCTGGGATTTCAGCCTCTGAT	0.577													68	55					0	0	0	0
C6orf27	80737	broad.mit.edu	37	6	31743183	31743183	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:31743183C>T	uc011dog.1	-	4	775	c.537G>A	c.(535-537)TGG>TGA	p.W179*	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	179						extracellular region				ovary(3)	3						CCAGCTCCACCCAGTTGCTAT	0.587													35	20					0	0	0	0
DNAH8	1769	broad.mit.edu	37	6	38851748	38851748	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:38851748C>A	uc003ooe.1	+	54	8182	c.7582C>A	c.(7582-7584)CCT>ACT	p.P2528T		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TATTAATATGCCTGTGATTAA	0.328													12	20					0.00010058	0.000264838	1	0
DNAH8	1769	broad.mit.edu	37	6	38919096	38919096	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:38919096C>A	uc003ooe.1	+	80	12200	c.11600C>A	c.(11599-11601)TCT>TAT	p.S3867Y	DNAH8_uc003oog.1_Missense_Mutation_p.S316Y|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATTTTTAGGTCTTGGTGCCCA	0.338													39	61					9.62906e-15	3.13077e-14	1	0
HSP90AB1	3326	broad.mit.edu	37	6	44219990	44219990	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:44219990A>T	uc003oxa.1	+	10	1801	c.1717A>T	c.(1717-1719)AAG>TAG	p.K573*	HSP90AB1_uc011dvr.1_Nonsense_Mutation_p.K563*|HSP90AB1_uc003oxb.1_Nonsense_Mutation_p.K573*|HSP90AB1_uc011dvs.1_Nonsense_Mutation_p.K393*|HSP90AB1_uc003oxc.1_Nonsense_Mutation_p.K211*	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	573					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AATCTTAGATAAGAAGGTTGA	0.443													19	31					0	0	0	0
ENPP4	22875	broad.mit.edu	37	6	46108938	46108938	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:46108938C>T	uc003oxy.2	+	3	1235	c.976C>T	c.(976-978)CTA>TTA	p.L326L		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	326	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						GACAATTGTGCTAAATGAATC	0.338													19	19					0	0	0	0
PKHD1	5314	broad.mit.edu	37	6	51484071	51484071	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:51484071C>T	uc003pah.1	-	67	12309	c.12033G>A	c.(12031-12033)CTG>CTA	p.L4011L		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	4011	Cytoplasmic (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TTTGGCCTGCCAGCTGGTATC	0.567													30	43					0	0	0	0
HCRTR2	3062	broad.mit.edu	37	6	55120039	55120039	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:55120039C>T	uc003pcl.2	+	3	823	c.508C>T	c.(508-510)CGT>TGT	p.R170C	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R105C	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	170	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAAGCGGGCCCGTAACAGCAT	0.502													32	48					0	0	0	0
EYS	346007	broad.mit.edu	37	6	66204788	66204788	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:66204788C>A	uc011dxu.1	-	4	1054	c.516G>T	c.(514-516)CAG>CAT	p.Q172H	EYS_uc003peq.2_Missense_Mutation_p.Q172H|EYS_uc003per.1_Missense_Mutation_p.Q172H|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	172	EGF-like 1.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						CCTGGCAGAACTGCTGTTTCA	0.453													13	30					2.68362e-12	8.49092e-12	1	0
C6orf165	154313	broad.mit.edu	37	6	88127994	88127994	+	Silent	SNP	C	A	A	rs140079201		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:88127994C>A	uc003plv.2	+	7	792	c.700C>A	c.(700-702)CGG>AGG	p.R234R	C6orf165_uc003plw.2_Silent_p.R46R|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Silent_p.R234R	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	234										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TGAGACTGCCCGGAGCCAGGT	0.488													22	37					7.45023e-12	2.33216e-11	1	0
FUT9	10690	broad.mit.edu	37	6	96651430	96651430	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:96651430G>C	uc003pop.3	+	3	740	c.399G>C	c.(397-399)TGG>TGC	p.W133C		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	133	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AATGGATTTGGATGAATTTGG	0.458													15	25					0	0	0	0
FUT9	10690	broad.mit.edu	37	6	96651555	96651555	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:96651555C>G	uc003pop.3	+	3	865	c.524C>G	c.(523-525)ACA>AGA	p.T175R		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	175	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		ACGGTAAGCACAAATCCCTTC	0.463													18	38					0	0	0	0
C6orf204	387119	broad.mit.edu	37	6	118802981	118802981	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:118802981T>A	uc003pxz.1	-	8	2294	c.1706A>T	c.(1705-1707)CAG>CTG	p.Q569L	C6orf204_uc003pya.1_Missense_Mutation_p.Q572L	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	569	Potential.					centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		TTTCTTTTTCTGGCATATTAA	0.269													6	15					0	0	0	0
PTPRK	5796	broad.mit.edu	37	6	128385930	128385930	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:128385930T>A	uc003qbk.2	-	13	2534	c.2167A>T	c.(2167-2169)ACC>TCC	p.T723S	PTPRK_uc003qbj.2_Missense_Mutation_p.T723S|PTPRK_uc010kfc.2_Missense_Mutation_p.T723S|PTPRK_uc011ebu.1_Missense_Mutation_p.T723S|PTPRK_uc003qbl.1_Missense_Mutation_p.T593S|PTPRK_uc011ebv.1_Missense_Mutation_p.T723S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	723	Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ACGCACTGGGTTTTAGTTTCC	0.343													17	37					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129419489	129419489	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:129419489T>C	uc003qbn.2	+	4	673	c.568T>C	c.(568-570)TCA>CCA	p.S190P	LAMA2_uc003qbo.2_Missense_Mutation_p.S190P	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	190	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGGGCCACCGTCATATGCCAA	0.443													31	40					0	0	0	0
ENPP1	5167	broad.mit.edu	37	6	132203596	132203596	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:132203596G>C	uc011ecf.1	+	21	2232	c.2212G>C	c.(2212-2214)GGG>CGG	p.G738R		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	738	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	AGTGAGTTACGGGTTCCTCTC	0.383													35	56					0	0	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597402	136597402	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:136597402T>A	uc003qgx.1	-	5	1514	c.1261A>T	c.(1261-1263)AAA>TAA	p.K421*	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Nonsense_Mutation_p.K419*|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Nonsense_Mutation_p.K419*	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	421					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GCAAAACTTTTACCCTGATCT	0.423													97	225					0	0	0	0
VTA1	51534	broad.mit.edu	37	6	142487415	142487415	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:142487415G>A	uc003qiw.2	+	2	178	c.163G>A	c.(163-165)GAA>AAA	p.E55K	VTA1_uc011edt.1_RNA|VTA1_uc011edu.1_Intron	NM_016485	NP_057569	Q9NP79	VTA1_HUMAN	Vps20-associated 1 homolog	55	Interaction with CHMP5.|Interaction with IST1.				cellular membrane organization|endosome transport|protein transport	cytosol|endosome membrane	protein binding				0	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;1.34e-05)|GBM - Glioblastoma multiforme(68;0.00182)		TAAAACTCCTGAATGTCGCAA	0.299													21	32					0	0	0	0
STX11	8676	broad.mit.edu	37	6	144507960	144507960	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:144507960G>T	uc003qks.3	+	2	388	c.196G>T	c.(196-198)GGA>TGA	p.G66*		NM_003764	NP_003755	O75558	STX11_HUMAN	syntaxin 11	66	Potential.				cellular membrane fusion|intracellular protein transport|vesicle-mediated transport	Golgi apparatus|membrane	SNAP receptor activity			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(155;2.17e-06)|GBM - Glioblastoma multiforme(68;0.0492)		GAAGCGGCTGGGAAAGCAGAA	0.622									Familial_Hemophagocytic_Lymphohistiocytosis				12	18					4.84862e-15	1.58964e-14	1	0
GRM1	2911	broad.mit.edu	37	6	146720539	146720539	+	Silent	SNP	G	C	C	rs114187147	byFrequency	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:146720539G>C	uc010khw.1	+	8	2834	c.2364G>C	c.(2362-2364)GCG>GCC	p.A788A	GRM1_uc010khv.1_Silent_p.A788A|GRM1_uc003qll.2_Silent_p.A788A|GRM1_uc011edz.1_Silent_p.A788A|GRM1_uc011eea.1_Silent_p.A788A	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	788	Helical; Name=6; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	AATATATCGCGTTCACCATGT	0.488													48	73					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146755774	146755774	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:146755774C>T	uc010khw.1	+	9	3897	c.3427C>T	c.(3427-3429)CCT>TCT	p.P1143S	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1143	Ser-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GGATGATTCGCCTGCGCTGAC	0.662													41	45					0	0	0	0
FNDC1	84624	broad.mit.edu	37	6	159677661	159677661	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:159677661G>T	uc010kjv.2	+	18	5372	c.5172G>T	c.(5170-5172)ACG>ACT	p.T1724T		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1724	Fibronectin type-III 5.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCCCAACACGAGGTACGATG	0.423													53	72					1.38658e-30	5.19745e-30	1	0
CRHR2	1395	broad.mit.edu	37	7	30701809	30701809	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:30701809C>A	uc003tbn.2	-	7	965	c.721G>T	c.(721-723)GCC>TCC	p.A241S	CRHR2_uc010kvw.1_Missense_Mutation_p.A241S|CRHR2_uc010kvx.1_Missense_Mutation_p.A240S|CRHR2_uc010kvy.1_Missense_Mutation_p.A77S|CRHR2_uc003tbo.2_Missense_Mutation_p.A227S|CRHR2_uc003tbp.2_Missense_Mutation_p.A268S	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	241	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						ATGGCCCAGGCGACGATGATG	0.562													35	52					5.71845e-15	1.86962e-14	1	0
POM121L12	285877	broad.mit.edu	37	7	53103797	53103797	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:53103797G>T	uc003tpz.2	+	1	449	c.433G>T	c.(433-435)GAG>TAG	p.E145*		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	145											0						CGCGCCCCCTGAGCGTCAGGA	0.577													11	24					1.5842e-08	4.60396e-08	1	0
ZNF107	51427	broad.mit.edu	37	7	64168848	64168848	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:64168848T>G	uc003ttd.2	+	7	2952	c.2166T>G	c.(2164-2166)TGT>TGG	p.C722W	ZNF107_uc003tte.2_Missense_Mutation_p.C722W	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	722	C2H2-type 24.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				CCTACAAATGTGAAGAATGTG	0.348													10	11					0	0	0	0
ZNF273	10793	broad.mit.edu	37	7	64388382	64388382	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:64388382A>G	uc003tto.2	+	4	752	c.676A>G	c.(676-678)AAA>GAA	p.K226E	ZNF273_uc003ttl.2_Missense_Mutation_p.K161E|ZNF273_uc003ttn.2_Missense_Mutation_p.K161E	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	226	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TCAGCATAAGAAAACTGCTAC	0.313													36	32					0	0	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654694	99654694	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:99654694G>A	uc003uso.2	+	2	209	c.65G>A	c.(64-66)GGG>GAG	p.G22E	ZSCAN21_uc011kje.1_Missense_Mutation_p.G21E|ZSCAN21_uc003usn.1_Missense_Mutation_p.G21E	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	22					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GAGCAGGTGGGGCCTCTGATG	0.537													79	44					0	0	0	0
IQUB	154865	broad.mit.edu	37	7	123092911	123092911	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:123092911C>A	uc003vkn.2	-	13	2839	c.2262G>T	c.(2260-2262)CAG>CAT	p.Q754H	IQUB_uc011kny.1_Missense_Mutation_p.Q87H|IQUB_uc003vko.2_Missense_Mutation_p.Q754H|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	754										ovary(3)|large_intestine(1)	4						GCACTGGAACCTGAGAAAAAT	0.348													12	5					1.49906e-05	4.03751e-05	1	0
PLXNA4	91584	broad.mit.edu	37	7	131831391	131831391	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:131831391G>C	uc003vra.3	-	28	5162	c.4933C>G	c.(4933-4935)CTG>GTG	p.L1645V	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1645	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCACTCTCCAGGTCAGGAGTG	0.577													85	50					0	0	0	0
LRGUK	136332	broad.mit.edu	37	7	133884049	133884049	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:133884049G>C	uc003vrm.1	+	14	1639	c.1623G>C	c.(1621-1623)GAG>GAC	p.E541D		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	541	Guanylate kinase-like.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						AAAAATATGAGGGATATTTGC	0.363													39	25					0	0	0	0
LONRF1	91694	broad.mit.edu	37	8	12586411	12586411	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:12586411T>G	uc003wwd.1	-	10	2072	c.2009A>C	c.(2008-2010)AAG>ACG	p.K670T	LONRF1_uc011kxv.1_Missense_Mutation_p.K259T|LONRF1_uc010lsp.1_Missense_Mutation_p.K270T	NM_152271	NP_689484	Q17RB8	LONF1_HUMAN	LON peptidase N-terminal domain and ring finger	670	Lon.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(644;0.236)		TTAAAATACCTTAACATCTTC	0.403													28	47					0	0	0	0
UNC5D	137970	broad.mit.edu	37	8	35542267	35542267	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:35542267G>T	uc003xjr.1	+	6	1247	c.919G>T	c.(919-921)GTG>TTG	p.V307L	UNC5D_uc003xjs.1_Missense_Mutation_p.V302L|UNC5D_uc003xjt.1_Missense_Mutation_p.V76L	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	307	Extracellular (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCTTTGTCCTGGTGAGATATA	0.463													24	44					6.36457e-07	1.76677e-06	1	0
PROSC	11212	broad.mit.edu	37	8	37623867	37623867	+	Silent	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:37623867T>C	uc003xkh.2	+	4	390	c.313T>C	c.(313-315)TTG>CTG	p.L105L		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	105							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	TGTCAACAAATTGATGGGTAA	0.363													53	65					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48697683	48697683	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:48697683C>A	uc003xqi.2	-	78	11155	c.11098G>T	c.(11098-11100)GAG>TAG	p.E3700*	PRKDC_uc003xqj.2_Nonsense_Mutation_p.E3700*|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3700					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CCGGGAATCTCCAGCTCATTT	0.453								NHEJ					23	32					3.01185e-09	9.02022e-09	1	0
RP1	6101	broad.mit.edu	37	8	55538955	55538955	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:55538955C>T	uc003xsd.1	+	4	2661	c.2513C>T	c.(2512-2514)TCT>TTT	p.S838F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	838					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GCACCGCAATCTCAAGCAGAA	0.313													22	32					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55542017	55542017	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:55542017C>G	uc003xsd.1	+	4	5723	c.5575C>G	c.(5575-5577)CAG>GAG	p.Q1859E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1859					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGGTAGTCATCAGTCAGAAAG	0.418													24	20					0	0	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886016	88886016	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:88886016G>A	uc003ydz.2	-	1	281	c.184C>T	c.(184-186)CAT>TAT	p.H62Y		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	62										ovary(1)	1						TCCCAGCTATGAATCTGGACC	0.512													39	50					0	0	0	0
RUNX1T1	862	broad.mit.edu	37	8	93003886	93003886	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:93003886C>T	uc003yfd.2	-	6	1056	c.972G>A	c.(970-972)AGG>AGA	p.R324R	RUNX1T1_uc003yfc.1_Silent_p.R297R|RUNX1T1_uc003yfe.1_Silent_p.R287R|RUNX1T1_uc010mao.2_Silent_p.R297R|RUNX1T1_uc011lgi.1_Silent_p.R335R|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Silent_p.R287R	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	324					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TGTTTCTGTCCCTGAGGTCCC	0.512													51	107					0	0	0	0
UBR5	51366	broad.mit.edu	37	8	103297762	103297762	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:103297762G>C	uc003ykr.1	-	39	5496	c.5463C>G	c.(5461-5463)TAC>TAG	p.Y1821*	UBR5_uc003yks.1_Nonsense_Mutation_p.Y1821*	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1821					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CTGCATCTTGGTAAGTCAATT	0.373													11	69					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110489571	110489571	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:110489571C>T	uc003yne.2	+	53	9139	c.9035C>T	c.(9034-9036)CCT>CTT	p.P3012L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3012	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GATTGCTTTCCTGTACATCCG	0.408										HNSCC(38;0.096)			23	33					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113259248	113259248	+	Splice_Site	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:113259248C>A	uc003ynu.2	-	64	10381	c.10222_splice	c.e64+1	p.P3408_splice	CSMD3_uc003yns.2_Splice_Site_p.P2610_splice|CSMD3_uc003ynt.2_Splice_Site_p.P3368_splice|CSMD3_uc011lhx.1_Splice_Site_p.P3239_splice	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1							integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAATACTTACGTATGCATTC	0.378										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			17	35					1.15088e-07	3.27194e-07	1	0
NOV	4856	broad.mit.edu	37	8	120430512	120430512	+	Silent	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:120430512A>T	uc003yoq.2	+	3	746	c.525A>T	c.(523-525)CCA>CCT	p.P175P		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	175					regulation of cell growth		growth factor activity|insulin-like growth factor binding	p.P175A(1)		ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTGTGGCCCAGATGAGGAGG	0.502													50	78					0	0	0	0
LYPD2	137797	broad.mit.edu	37	8	143832542	143832542	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr8:143832542C>A	uc003ywz.2	-	2	188	c.105G>T	c.(103-105)TCG>TCT	p.S35S		NM_205545	NP_991108	Q6UXB3	LYPD2_HUMAN	LY6/PLAUR domain containing 2 precursor	35	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TGACACAGTCCGACACTCCTG	0.652													46	61					1.23713e-20	4.28265e-20	1	0
PTPRD	5789	broad.mit.edu	37	9	8485777	8485777	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:8485777G>T	uc003zkk.2	-	27	3751	c.3040C>A	c.(3040-3042)CTG>ATG	p.L1014M	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.L1005M|PTPRD_uc003zkm.2_Missense_Mutation_p.L1001M|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1014	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCCACAGGCAGTGTCCTGAAC	0.448										TSP Lung(15;0.13)			13	13					2.68362e-12	8.49092e-12	1	0
IFNA6	3443	broad.mit.edu	37	9	21350709	21350709	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:21350709T>C	uc011lni.1	-	1	178	c.178A>G	c.(178-180)AGA>GGA	p.R60G		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	60					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TGGGGAAATCTGAAGTCATGT	0.522													64	30					0	0	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702701	40702701	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:40702701C>A	uc010mmj.2	+	4	387	c.358C>A	c.(358-360)CCA>ACA	p.P120T		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	120	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GCTCTCCGGTCCAGACCCCCC	0.627													22	108					1.04352e-10	3.20684e-10	1	0
TRPM6	140803	broad.mit.edu	37	9	77354822	77354822	+	Missense_Mutation	SNP	C	A	A	rs144713167		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:77354822C>A	uc004ajl.1	-	34	5542	c.5304G>T	c.(5302-5304)CAG>CAT	p.Q1768H	TRPM6_uc004ajk.1_Missense_Mutation_p.Q1763H|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.Q719H|TRPM6_uc010mpd.1_Missense_Mutation_p.Q601H|TRPM6_uc010mpe.1_Missense_Mutation_p.Q315H|TRPM6_uc004ajj.1_Missense_Mutation_p.Q724H	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1768	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GGGACAATACCTGGATCATTG	0.498													33	53					2.08457e-15	6.87265e-15	1	0
RPSAP9	653162	broad.mit.edu	37	9	79013873	79013873	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:79013873G>C	uc011lsj.1	+	1	359	c.259G>C	c.(259-261)GTG>CTG	p.V87L		NR_026890				SubName: Full=Laminin receptor-like protein LAMRL5;												0						CCAGAGGGCTGTGCTGAAGTT	0.542													12	28					0	0	0	0
RASEF	158158	broad.mit.edu	37	9	85627405	85627405	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:85627405C>T	uc004amo.1	-	5	1048	c.787G>A	c.(787-789)GTA>ATA	p.V263I		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	263	Potential.				protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TTTTGACTTACGCGTTTTGAT	0.333													5	14					0	0	0	0
CTSL3	392360	broad.mit.edu	37	9	90388441	90388441	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:90388441A>G	uc004apm.1	+	3	307	c.301A>G	c.(301-303)ACT>GCT	p.T101A		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						GACCTGGTGGACTGCTCTAGG	0.468													29	40					0	0	0	0
C9orf102	375748	broad.mit.edu	37	9	98678717	98678717	+	Splice_Site	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:98678717G>A	uc004avt.3	+	6	1579	c.1191_splice	c.e6+1	p.R397_splice	C9orf102_uc010mrx.1_Splice_Site|C9orf102_uc011lum.1_Splice_Site_p.R99_splice|C9orf102_uc010mry.1_Splice_Site_p.R99_splice|C9orf102_uc010mrz.2_Splice_Site_p.R208_splice	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein						DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				GGAAGACCGGGTAAGAACCGC	0.383													26	37					0	0	0	0
MUSK	4593	broad.mit.edu	37	9	113459720	113459720	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:113459720C>T	uc004bey.2	+	5	700	c.602C>T	c.(601-603)TCC>TTC	p.S201F	MUSK_uc004bex.2_Missense_Mutation_p.S201F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	201	Ig-like 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ACAGCATATTCCAAAGTGGTG	0.507													46	42					0	0	0	0
ZNF883	169834	broad.mit.edu	37	9	115760032	115760032	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:115760032C>T	uc011lwy.1	-	5	1747	c.508G>A	c.(508-510)GAA>AAA	p.E170K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	170	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCCTGATGTTCAATTAGGTGT	0.403													29	45					0	0	0	0
ZNF618	114991	broad.mit.edu	37	9	116764924	116764924	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:116764924G>T	uc004bid.2	+	6	631	c.532G>T	c.(532-534)GAG>TAG	p.E178*	ZNF618_uc004bib.1_Nonsense_Mutation_p.E146*|ZNF618_uc004bic.2_Nonsense_Mutation_p.E146*|ZNF618_uc011lxi.1_Nonsense_Mutation_p.E146*|ZNF618_uc011lxj.1_Nonsense_Mutation_p.E146*	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACCTCAGGGGAGGGAGCCTC	0.612													27	81					0.000147802	0.00038831	1	0
COL27A1	85301	broad.mit.edu	37	9	117071686	117071686	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:117071686C>T	uc011lxl.1	+	60	5364	c.5364C>T	c.(5362-5364)TTC>TTT	p.F1788F	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Silent_p.F103F	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1788	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCGTACGCTTCCGGGCCTGGA	0.607													46	66					0	0	0	0
FBXW2	26190	broad.mit.edu	37	9	123550177	123550177	+	Silent	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:123550177C>T	uc004bkl.1	-	3	521	c.360G>A	c.(358-360)AAG>AAA	p.K120K	FBXW2_uc011lyc.1_5'UTR|FBXW2_uc004bkn.2_Silent_p.K152K|FBXW2_uc004bkm.1_Silent_p.K120K|FBXW2_uc010mvj.1_Silent_p.K120K	NM_012164	NP_036296	Q9UKT8	FBXW2_HUMAN	F-box and WD repeat domain containing 2	120					proteolysis		protein binding|ubiquitin-protein ligase activity			urinary_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						AATAAACCTTCTTCCAGTGCA	0.443													45	55					0	0	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377755	125377755	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:125377755G>A	uc011lyy.1	+	1	739	c.739G>A	c.(739-741)GTG>ATG	p.V247M		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCACCTCACTGTGGTGGCCAT	0.547													44	72					0	0	0	0
OR1B1	347169	broad.mit.edu	37	9	125391641	125391641	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:125391641G>A	uc011lyz.1	-	1	174	c.174C>T	c.(172-174)CAC>CAT	p.H58H		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	58	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATGGGTGAGTGCAGTCTGG	0.522													20	37					0	0	0	0
LCN1	3933	broad.mit.edu	37	9	138415086	138415086	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:138415086G>C	uc004cfz.1	+	3	288	c.230G>C	c.(229-231)GGC>GCC	p.G77A	LCN1_uc004cga.1_Missense_Mutation_p.G77A	NM_002297	NP_002288	P31025	LCN1_HUMAN	lipocalin 1 precursor	77					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		AGGATAAGTGGCCGGTGCCAG	0.637													11	33					0	0	0	0
CACNA1B	774	broad.mit.edu	37	9	140901299	140901299	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr9:140901299G>A	uc004cog.2	+	16	2200	c.2055G>A	c.(2053-2055)TCG>TCA	p.S685S	CACNA1B_uc011mfd.1_Silent_p.S216S	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	685	Helical; Name=S6 of repeat II; (Potential).|II.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GCATGTTCTCGTCCTTTTACT	0.552													6	17					0	0	0	0
CNKSR2	22866	broad.mit.edu	37	X	21670529	21670529	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:21670529G>A	uc004czx.1	+	22	3031	c.2995G>A	c.(2995-2997)GAT>AAT	p.D999N	CNKSR2_uc011mjo.1_Missense_Mutation_p.D969N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	999					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CCTTTTCTTGGATATCTGTCA	0.393													30	15					0	0	0	0
KLHL34	257240	broad.mit.edu	37	X	21674749	21674749	+	Silent	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:21674749G>A	uc004czz.1	-	1	1700	c.1158C>T	c.(1156-1158)GAC>GAT	p.D386D		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	386	Kelch 2.									ovary(1)	1						CCCGCGAGTCGTCGGCCAGGG	0.682													10	6					0	0	0	0
DMD	1756	broad.mit.edu	37	X	32361265	32361265	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:32361265C>A	uc004dda.1	-	40	5969	c.5725G>T	c.(5725-5727)GAA>TAA	p.E1909*	DMD_uc004dcw.2_Nonsense_Mutation_p.E565*|DMD_uc004dcx.2_Nonsense_Mutation_p.E568*|DMD_uc004dcz.2_Nonsense_Mutation_p.E1786*|DMD_uc004dcy.1_Nonsense_Mutation_p.E1905*|DMD_uc004ddb.1_Nonsense_Mutation_p.E1901*|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1909	Spectrin 13.|Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ATTTTCCTTTCATCTCTGGGC	0.343													25	12					7.07758e-08	2.02192e-07	1	0
FAM47C	442444	broad.mit.edu	37	X	37027150	37027150	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:37027150C>A	uc004ddl.1	+	1	681	c.667C>A	c.(667-669)CGC>AGC	p.R223S		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	223										ovary(3)	3						GTCCCATCTCCGCCCACAGCC	0.657													35	23					1.36239e-07	3.86394e-07	1	0
ZNF630	57232	broad.mit.edu	37	X	47918863	47918863	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:47918863T>A	uc004div.3	-	5	1220	c.968A>T	c.(967-969)AAG>ATG	p.K323M	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.K199M	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	323	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						TCTTCCATACTTAGTACATTC	0.433													26	7					0	0	0	0
SHROOM4	57477	broad.mit.edu	37	X	50377848	50377848	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:50377848G>C	uc004dpe.2	-	4	1251	c.1225C>G	c.(1225-1227)CGC>GGC	p.R409G	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.R293G	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	409					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GCACTATGGCGATGCCCTGTG	0.572													10	5					0	0	0	0
ALAS2	212	broad.mit.edu	37	X	55042056	55042056	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:55042056G>A	uc004dua.3	-	8	1261	c.1123C>T	c.(1123-1125)CGT>TGT	p.R375C	ALAS2_uc004dub.3_Missense_Mutation_p.R362C|ALAS2_uc004dud.3_Missense_Mutation_p.R338C	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	375					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	ATTCCATCACGCTCCCCAATC	0.522													28	15					0	0	0	0
ARHGEF9	23229	broad.mit.edu	37	X	62917154	62917154	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:62917154C>G	uc004dvl.2	-	4	1251	c.412G>C	c.(412-414)GAC>CAC	p.D138H	ARHGEF9_uc004dvj.1_Missense_Mutation_p.D27H|ARHGEF9_uc004dvk.1_5'UTR|ARHGEF9_uc011mos.1_Missense_Mutation_p.D117H|ARHGEF9_uc004dvm.1_Missense_Mutation_p.D117H|ARHGEF9_uc011mot.1_Missense_Mutation_p.D85H|ARHGEF9_uc004dvn.2_Missense_Mutation_p.D145H	NM_015185	NP_056000	O43307	ARHG9_HUMAN	Cdc42 guanine exchange factor 9	138	DH.				apoptosis|induction of apoptosis by extracellular signals|ion transmembrane transport|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(5)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	8						CTGAACATGTCCCTTCTCTTC	0.408													21	41					0	0	0	0
FAM123B	139285	broad.mit.edu	37	X	63410016	63410016	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:63410016C>T	uc004dvo.2	-	2	3424	c.3151G>A	c.(3151-3153)GTG>ATG	p.V1051M		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	1051	Pro-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						GGCAGCAGCACATCTCGAGGC	0.612													9	10					0	0	0	0
RLIM	51132	broad.mit.edu	37	X	73811496	73811496	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:73811496G>T	uc004ebu.2	-	5	1944	c.1654C>A	c.(1654-1656)CAG>AAG	p.Q552K	RLIM_uc004ebw.2_Missense_Mutation_p.Q552K	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	552					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TTGTCAATCTGTTCTTTGGTG	0.393													19	32					7.07596e-05	0.000186736	1	0
RLIM	51132	broad.mit.edu	37	X	73811508	73811508	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:73811508G>C	uc004ebu.2	-	5	1932	c.1642C>G	c.(1642-1644)CTC>GTC	p.L548V	RLIM_uc004ebw.2_Missense_Mutation_p.L548V	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	548					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCTTTGGTGAGTCCTCTAGGT	0.413													17	30					0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963237	73963237	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:73963237G>T	uc004eby.2	-	3	1772	c.1155C>A	c.(1153-1155)GGC>GGA	p.G385G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	385					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTTCCTCTTTGCCTTTCTTCT	0.458													52	153					1.4374e-25	5.18963e-25	1	0
TAF9B	51616	broad.mit.edu	37	X	77392460	77392460	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:77392460G>T	uc004eda.2	-	5	504	c.433C>A	c.(433-435)CGA>AGA	p.R145R		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	145					negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						ACACTTAATCGTGGAACTAGT	0.408													31	48					1.21669e-08	3.54467e-08	1	0
KLHL4	56062	broad.mit.edu	37	X	86773132	86773132	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:86773132G>T	uc004efb.2	+	1	418	c.236G>T	c.(235-237)GGA>GTA	p.G79V	KLHL4_uc004efa.2_Missense_Mutation_p.G79V	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	79						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CCAGTGCCAGGACCGGCCCCT	0.498													26	41					1.5548e-18	5.25862e-18	1	0
PABPC5	140886	broad.mit.edu	37	X	90690670	90690670	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:90690670G>T	uc004efg.2	+	2	534	c.94G>T	c.(94-96)GAC>TAC	p.D32Y	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	32	RRM 1.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						TGTCACCGAGGACATGCTCTA	0.567													13	28					4.36969e-10	1.33242e-09	1	0
SYTL4	94121	broad.mit.edu	37	X	99931173	99931173	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:99931173C>A	uc004egd.3	-	19	2224	c.1868G>T	c.(1867-1869)GGG>GTG	p.G623V	SYTL4_uc004egc.2_Missense_Mutation_p.G54V|SYTL4_uc010nnb.2_Missense_Mutation_p.G295V|SYTL4_uc010nnc.2_Missense_Mutation_p.G623V|SYTL4_uc004ege.3_Missense_Mutation_p.G623V|SYTL4_uc004egf.3_Missense_Mutation_p.G623V	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	623					exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATTACTGATCCCTGAGGAGAA	0.557													41	63					2.00842e-17	6.75403e-17	1	0
NOX1	27035	broad.mit.edu	37	X	100125791	100125791	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:100125791C>T	uc004egj.2	-	2	264	c.58G>A	c.(58-60)GGG>AGG	p.G20R	uc010nnf.2_Intron|NOX1_uc004egl.3_Missense_Mutation_p.G20R|NOX1_uc010nne.2_Missense_Mutation_p.G20R	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	20	Helical; (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						ACATTCAGCCCTAACCAAACA	0.383													35	61					0	0	0	0
CENPI	2491	broad.mit.edu	37	X	100417906	100417906	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:100417906C>T	uc004egx.2	+	21	2491	c.2221C>T	c.(2221-2223)CAT>TAT	p.H741Y	CENPI_uc011mrg.1_Missense_Mutation_p.H727Y	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	741					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TAGTGTTCATCATTCTTCCAT	0.378													39	49					0	0	0	0
GPRASP1	9737	broad.mit.edu	37	X	101912157	101912157	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:101912157C>G	uc004ejj.3	+	5	4117	c.3316C>G	c.(3316-3318)CAG>GAG	p.Q1106E	GPRASP1_uc004eji.3_Missense_Mutation_p.Q1106E|GPRASP1_uc010nod.2_Missense_Mutation_p.Q1106E	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	1106	OPRD1-binding.					cytoplasm	protein binding			ovary(1)|lung(1)	2						TCAGCCTGATCAGCCTAGTCC	0.488													62	120					0	0	0	0
FAM199X	139231	broad.mit.edu	37	X	103432977	103432977	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:103432977G>A	uc004elw.2	+	5	1152	c.986G>A	c.(985-987)CGG>CAG	p.R329Q	FAM199X_uc004elx.2_Intron	NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	329										ovary(1)	1						GAGCGGATTCGGGATTCAAAA	0.398													77	133					0	0	0	0
TEX13A	56157	broad.mit.edu	37	X	104464080	104464080	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:104464080C>T	uc004ema.2	-	5	908	c.796G>A	c.(796-798)GAT>AAT	p.D266N	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Silent_p.E266E	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	266						intracellular	zinc ion binding			ovary(2)	2						GACCGGAGATCTCCCTCCTTC	0.552													27	42					0	0	0	0
MID2	11043	broad.mit.edu	37	X	107097876	107097876	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:107097876G>C	uc004enl.2	+	3	1331	c.758G>C	c.(757-759)CGC>CCC	p.R253P	MID2_uc004enk.2_Missense_Mutation_p.R253P	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	253	Potential.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						CTGGTTAAGCGCAACAGCGAA	0.448													33	47					0	0	0	0
IRS4	8471	broad.mit.edu	37	X	107977346	107977346	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:107977346G>C	uc004eoc.2	-	1	2262	c.2229C>G	c.(2227-2229)TAC>TAG	p.Y743*		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	743	YXXM motif 4.|CRK-binding.			Y->F: No effect. Reduces interaction with CRK by 50%; when associated with F-779. Abolishes interaction with CRK; when associated with F-700; F-717 and F-779.		plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						ACATCATCATGTACCCTCTTG	0.458													50	88					0	0	0	0
WDR44	54521	broad.mit.edu	37	X	117527102	117527102	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:117527102G>A	uc004eqn.2	+	4	1119	c.694G>A	c.(694-696)GTT>ATT	p.V232I	WDR44_uc004eqo.2_Missense_Mutation_p.V232I|WDR44_uc011mtr.1_Missense_Mutation_p.V207I|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	232	Pro-rich.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						AAAGAAGCCTGTTCCAGCACG	0.517													88	130					0	0	0	0
Unknown	0	broad.mit.edu	37	X	118513760	118513760	+	IGR	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:118513760G>C								PGRMC1 (135332 upstream) : SLC25A43 (19263 downstream)																							GCTAAAGTGAGAGTGATCAGG	0.413													28	57					0	0	0	0
NKRF	55922	broad.mit.edu	37	X	118723982	118723982	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:118723982A>T	uc004erq.2	-	2	2059	c.1406T>A	c.(1405-1407)GTC>GAC	p.V469D	NKRF_uc004err.2_Missense_Mutation_p.V469D	NM_017544	NP_060014	O15226	NKRF_HUMAN	transcription factor NRF	469					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|double-stranded RNA binding			ovary(1)|central_nervous_system(1)	2						CCTTTCATAGACATACTCAAC	0.403													52	92					0	0	0	0
AKAP14	158798	broad.mit.edu	37	X	119037469	119037469	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:119037469C>G	uc004ese.2	+	4	319	c.181C>G	c.(181-183)CCT>GCT	p.P61A	AKAP14_uc004esd.2_Missense_Mutation_p.P61A|AKAP14_uc004esf.2_Missense_Mutation_p.P61A	NM_178813	NP_848928	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14 isoform a	61						cytoplasm					0						GGAGCGAAACCCTTTGAAAAA	0.393													11	32					0	0	0	0
ZBTB33	10009	broad.mit.edu	37	X	119388366	119388366	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:119388366A>T	uc004esn.1	+	2	1324	c.1096A>T	c.(1096-1098)AGT>TGT	p.S366C	ZBTB33_uc010nqm.1_Missense_Mutation_p.S366C	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	366					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCAAAATACCAGTTTTGATGG	0.373													51	96					0	0	0	0
CT47B1	643311	broad.mit.edu	37	X	120008943	120008943	+	Silent	SNP	C	A	A	rs139114591	by1000genomes	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:120008943C>A	uc011muc.1	-	1	837	c.582G>T	c.(580-582)GCG>GCT	p.A194A		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	194											0						CCTGGACCGACGCAGCCTCCT	0.706													38	69					8.73648e-17	2.92958e-16	1	0
THOC2	57187	broad.mit.edu	37	X	122778702	122778702	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:122778702G>A	uc004etu.2	-	14	1519	c.1487C>T	c.(1486-1488)TCT>TTT	p.S496F	THOC2_uc011muh.1_Missense_Mutation_p.S417F|THOC2_uc011mui.1_Missense_Mutation_p.S381F	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	496					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GTCCATCAAAGAAAGAGATGG	0.333													27	46					0	0	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130215646	130215646	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:130215646G>T	uc004evz.2	+	2	352	c.7G>T	c.(7-9)GGC>TGC	p.G3C	ARHGAP36_uc004ewa.2_Intron|ARHGAP36_uc004ewb.2_Intron|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	3					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CAGAATGGGTGGCTGCATTCC	0.517													51	74					4.01344e-20	1.37721e-19	1	0
ARHGAP36	158763	broad.mit.edu	37	X	130220538	130220538	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:130220538C>T	uc004evz.2	+	11	1730	c.1385C>T	c.(1384-1386)GCA>GTA	p.A462V	ARHGAP36_uc004ewa.2_Missense_Mutation_p.A450V|ARHGAP36_uc004ewb.2_Missense_Mutation_p.A431V|ARHGAP36_uc004ewc.2_Missense_Mutation_p.A326V	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	462					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TTCAGGAGTGCACGCATAAAG	0.453													37	62					0	0	0	0
MAP7D3	79649	broad.mit.edu	37	X	135323385	135323385	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:135323385C>G	uc004ezt.2	-	5	560	c.469G>C	c.(469-471)GAT>CAT	p.D157H	MAP7D3_uc004ezs.2_Missense_Mutation_p.D156H|MAP7D3_uc011mwc.1_Missense_Mutation_p.D139H|MAP7D3_uc010nsa.1_Missense_Mutation_p.D156H	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	157						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					TGATAATCATCAGCAAGTCTC	0.328													23	36					0	0	0	0
MIR934	100126324	broad.mit.edu	37	X	135633067	135633067	+	RNA	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:135633067C>A	hsa-mir-934|MI0005756	+			c.31C>A			VGLL1_uc004ezy.2_Intron																	0						CTACTGGAGACACTGGTAGTA	0.413													13	28					5.50884e-06	1.49399e-05	1	0
MAGEC1	9947	broad.mit.edu	37	X	140995682	140995682	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:140995682T>A	uc004fbt.2	+	4	2778	c.2492T>A	c.(2491-2493)GTG>GAG	p.V831E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	831							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGTTCTCCTGTGAGCTCCTTC	0.567										HNSCC(15;0.026)			131	190					0	0	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996136	140996136	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:140996136C>A	uc004fbt.2	+	4	3232	c.2946C>A	c.(2944-2946)CTC>CTA	p.L982L	MAGEC1_uc010nsl.1_Silent_p.L49L	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	982	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CATTAGACCTCACCTCTGAGG	0.473										HNSCC(15;0.026)			70	127					2.23852e-25	8.03276e-25	1	0
SPANXN2	494119	broad.mit.edu	37	X	142803752	142803752	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:142803752G>T	uc004fbz.2	-	1	765	c.11C>A	c.(10-12)CCG>CAG	p.P4Q		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	4										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCTTGAAGTCGGCTGTTCCAT	0.388													76	154					1.20873e-29	4.50215e-29	1	0
SLITRK2	84631	broad.mit.edu	37	X	144906246	144906246	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:144906246G>T	uc004fcd.2	+	5	3293	c.2303G>T	c.(2302-2304)AGC>ATC	p.S768I	SLITRK2_uc010nsp.2_Missense_Mutation_p.S768I|SLITRK2_uc010nso.2_Missense_Mutation_p.S768I|SLITRK2_uc011mwq.1_Missense_Mutation_p.S768I|SLITRK2_uc011mwr.1_Missense_Mutation_p.S768I|SLITRK2_uc011mws.1_Missense_Mutation_p.S768I|SLITRK2_uc004fcg.2_Missense_Mutation_p.S768I|SLITRK2_uc011mwt.1_Missense_Mutation_p.S768I|CXorf1_uc004fch.2_5'Flank	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	768	Cytoplasmic (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					GAACTTCCCAGCGCAGGCCTA	0.463													77	132					3.4779e-39	1.33338e-38	1	0
GPR50	9248	broad.mit.edu	37	X	150348250	150348250	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:150348250C>G	uc010ntg.1	+	2	330	c.195C>G	c.(193-195)ATC>ATG	p.I65M	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.I65M	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	65	Helical; Name=2; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGCAACATCTTCGTGGTCA	0.488													152	317					0	0	0	0
PASD1	139135	broad.mit.edu	37	X	150780162	150780162	+	Silent	SNP	G	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:150780162G>C	uc004fev.3	+	4	476	c.144G>C	c.(142-144)CTG>CTC	p.L48L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	48	PAS.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGATTACACTGAGCACAGATG	0.318													14	75					0	0	0	0
PASD1	139135	broad.mit.edu	37	X	150791486	150791486	+	Silent	SNP	C	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:150791486C>A	uc004fev.3	+	7	828	c.496C>A	c.(496-498)CGG>AGG	p.R166R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	166						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGGAGGATCGGCTTTATCT	0.502													63	104					2.53126e-37	9.67303e-37	1	0
PASD1	139135	broad.mit.edu	37	X	150840134	150840134	+	Silent	SNP	G	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:150840134G>T	uc004fev.3	+	13	1652	c.1320G>T	c.(1318-1320)GGG>GGT	p.G440G		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	440						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AACACGCTGGGCAAGTGAAGC	0.493													64	79					1.88225e-35	7.14649e-35	1	0
PRAMEF18	391003	broad.mit.edu	37	1	13474788	13474788	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:13474788delG	uc009vnu.1	-	3	1388	c.1341delC	c.(1339-1341)CCCfs	p.P447fs		NM_001099850	NP_001093320	Q5VWM3	PRA18_HUMAN	PRAME family member 18	447											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGATCCTGTTGGGCTCCCTTA	0.562													---	---	---							
AK5	26289	broad.mit.edu	37	1	77752660	77752660	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:77752660delA	uc001dhn.2	+	2	352	c.95delA	c.(94-96)GAAfs	p.E32fs	AK5_uc001dho.2_Frame_Shift_Del_p.E6fs|AK5_uc001dhm.1_Frame_Shift_Del_p.E32fs	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	32					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						TCTAAGCCCGAAGATCCAGTA	0.338													---	---	---							
Unknown	0	broad.mit.edu	37	1	228612500	228612500	+	IGR	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:228612500delC								TRIM17 (7917 upstream) : HIST3H3 (46 downstream)																							GCGGAAGGAACCCCCCGAAAC	0.557													---	---	---							
Unknown	0	broad.mit.edu	37	1	229824659	229824660	+	IGR	DEL	AT	-	-	rs61068324		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:229824659_229824660delAT								URB2 (28713 upstream) : GALNT2 (368876 downstream)																							aaaacaaaacaTATATATATAT	0.228													---	---	---							
OR11L1	391189	broad.mit.edu	37	1	248004498	248004499	+	Frame_Shift_Ins	INS	-	A	A	rs147783465	byFrequency	TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr1:248004498_248004499insA	uc001idn.1	-	1	700_701	c.700_701insT	c.(700-702)CGGfs	p.R234fs		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGTCTTTCTCCGGCCAGAGGTG	0.505													---	---	---							
Unknown	0	broad.mit.edu	37	10	32391368	32391368	+	IGR	DEL	T	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:32391368delT								KIF5B (45997 upstream) : EPC1 (166491 downstream)																							CACCTATGTCTTTTTTTTTTT	0.353													---	---	---							
Unknown	0	broad.mit.edu	37	10	52467358	52467359	+	IGR	DEL	TC	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:52467358_52467359delTC								SGMS1 (82435 upstream) : ASAH2B (32337 downstream)																							AAAGCTGATATCcacacacaca	0.342													---	---	---							
Unknown	0	broad.mit.edu	37	10	88391273	88391273	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr10:88391273delG								WAPAL (109732 upstream) : OPN4 (23041 downstream)																							TTTCTCAAACGGGGGATTCAC	0.547													---	---	---							
Unknown	0	broad.mit.edu	37	12	8170124	8170125	+	IGR	INS	-	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr12:8170124_8170125insT								SLC2A3 (81232 upstream) : FOXJ2 (15234 downstream)																							TTCTATATCAATTTTTTGATCT	0.381													---	---	---							
MDGA2	161357	broad.mit.edu	37	14	47342647	47342647	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr14:47342647delC	uc001wwj.3	-	14	2730	c.2534delG	c.(2533-2535)GGAfs	p.G845fs	MDGA2_uc001wwh.3_Frame_Shift_Del_p.G47fs|MDGA2_uc001wwi.3_Frame_Shift_Del_p.G616fs|MDGA2_uc010ani.2_Frame_Shift_Del_p.G405fs	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	845	MAM.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TATATGTTGTCCATACATGTG	0.343													---	---	---							
MTMR15	22909	broad.mit.edu	37	15	31214472	31214473	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:31214472_31214473delAG	uc001zff.2	+	8	2378_2379	c.2087_2088delAG	c.(2086-2088)CAGfs	p.Q696fs	MTMR15_uc001zfe.2_Frame_Shift_Del_p.Q301fs	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	696	Potential.				double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		CTTTTGTCTCAGAGAATTTATT	0.426								Direct_reversal_of_damage|Editing_and_processing_nucleases					---	---	---							
COPS2	9318	broad.mit.edu	37	15	49420932	49420946	+	In_Frame_Del	DEL	ACATCAGCTACATCT	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:49420932_49420946delACATCAGCTACATCT	uc001zxf.2	-	12	1219_1233	c.1140_1154delAGATGTAGCTGATGT	c.(1138-1155)ATAGATGTAGCTGATGTG>ATG	p.380_385IDVADV>M	COPS2_uc001zxh.2_In_Frame_Del_p.387_392IDVADV>M|COPS2_uc010ufa.1_In_Frame_Del_p.316_321IDVADV>M	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	380_385	PCI.				cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		CAAGCTCTCCACATCAGCTACATCTATGTTTAACT	0.284													---	---	---							
Unknown	0	broad.mit.edu	37	15	84790135	84790136	+	IGR	INS	-	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr15:84790135_84790136insT								ADAMTSL3 (81544 upstream) : LOC388152 (77464 downstream)																							ATTTTGTTTTCTTTTTTTTTTT	0.302													---	---	---							
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													---	---	---							
ZNF99	7652	broad.mit.edu	37	19	22941167	22941167	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr19:22941167delC	uc010xrh.1	-	5	1271	c.1271delG	c.(1270-1272)GGCfs	p.G424fs		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAAAGCTTTGCCACATTCTTC	0.338													---	---	---							
Unknown	0	broad.mit.edu	37	2	26372632	26372632	+	IGR	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:26372632delC								RAB10 (12310 upstream) : HADHA (40873 downstream)																							Cttttcatttctttttttttt	0.229													---	---	---							
PTH2R	5746	broad.mit.edu	37	2	209308142	209308142	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:209308142delC	uc002vdb.2	+	6	792	c.579delC	c.(577-579)AGCfs	p.S193fs	PTH2R_uc010zjb.1_Frame_Shift_Del_p.S204fs	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	193	Helical; Name=2; (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GAGCTACAAGCATCTTTGTCA	0.398													---	---	---							
FN1	2335	broad.mit.edu	37	2	216271041	216271041	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr2:216271041delG	uc002vfa.2	-	19	3172	c.2906delC	c.(2905-2907)CCTfs	p.P969fs	FN1_uc002vfb.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfc.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfd.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfe.2_Frame_Shift_Del_p.P969fs|FN1_uc002vff.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfg.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfh.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfi.2_Frame_Shift_Del_p.P969fs|FN1_uc002vfj.2_Frame_Shift_Del_p.P969fs	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	969	|Fibronectin type-III 4.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTGACCCCAGGGGACAGCCC	0.567													---	---	---							
Unknown	0	broad.mit.edu	37	21	15165050	15165050	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr21:15165050delG								POTED (151144 upstream) : C21orf15 (50405 downstream)																							ACTTCCATCAGGAGAGGTGCA	0.512													---	---	---							
TBC1D10A	83874	broad.mit.edu	37	22	30688801	30688803	+	In_Frame_Del	DEL	CGC	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr22:30688801_30688803delCGC	uc011akt.1	-	11	1112_1114	c.1088_1090delGCG	c.(1087-1092)CGCGAA>CAA	p.363_364RE>Q	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_In_Frame_Del_p.221_222RE>Q|TBC1D10A_uc003ahj.3_In_Frame_Del_p.275_276RE>Q|TBC1D10A_uc010gvu.2_In_Frame_Del_p.370_371RE>Q|TBC1D10A_uc003ahk.3_In_Frame_Del_p.363_364RE>Q	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	363_364						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						ATGAGGTGTTCGCGCTCAATCTG	0.635													---	---	---							
Unknown	0	broad.mit.edu	37	3	183834680	183834681	+	IGR	INS	-	T	T			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr3:183834680_183834681insT								HTR3E (9898 upstream) : EIF2B5 (18129 downstream)																							CCCTCTAAATATTTTTTCTGAG	0.376													---	---	---							
PDHA2	5161	broad.mit.edu	37	4	96762121	96762121	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:96762121delG	uc003htr.3	+	1	883	c.820delG	c.(820-822)GGAfs	p.G274fs		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	274					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CTGTAGATCTGGAAAGGGGCC	0.458													---	---	---							
FAT1	2195	broad.mit.edu	37	4	187557372	187557372	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr4:187557372delA	uc003izf.2	-	6	4178	c.3990delT	c.(3988-3990)AATfs	p.N1330fs		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1330	Extracellular (Potential).|Cadherin 11.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GAGGGCGACCATTGTCAACTG	0.428										HNSCC(5;0.00058)			---	---	---							
Unknown	0	broad.mit.edu	37	5	20304325	20304325	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:20304325delG								CDH18 (316018 upstream) : None (None downstream)																							GTGGCATATTGGGTGGAATCA	0.438													---	---	---							
Unknown	0	broad.mit.edu	37	5	79628117	79628117	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:79628117delG								SPZ1 (10459 upstream) : LOC441089 (18307 downstream)																							TCATAGCAGAGGAAACAGAAT	0.418													---	---	---							
NSD1	64324	broad.mit.edu	37	5	176675268	176675269	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr5:176675268_176675269insA	uc003mfr.3	+	11	4722_4723	c.4584_4585insA	c.(4582-4587)TCTAAAfs	p.S1528fs	NSD1_uc003mft.3_Frame_Shift_Ins_p.S1259fs|NSD1_uc003mfs.1_Frame_Shift_Ins_p.S1425fs|NSD1_uc011dfx.1_Frame_Shift_Ins_p.S1176fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1528_1529					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TGCCTGCCTCTAAAAAAATGCA	0.495			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			---	---	---							
DSP	1832	broad.mit.edu	37	6	7568065	7568066	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:7568065_7568066insC	uc003mxp.1	+	10	1471_1472	c.1192_1193insC	c.(1192-1194)TCCfs	p.S398fs	DSP_uc003mxq.1_Frame_Shift_Ins_p.S398fs	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	398	Globular 1.|Spectrin 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCTCCAGGACTCCATCAGGAAG	0.515													---	---	---							
Unknown	0	broad.mit.edu	37	6	27529215	27529215	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:27529215delG								ZNF184 (88318 upstream) : HIST1H2BL (246043 downstream)																							TTGCCACTTAGGTTTCTCTGC	0.423													---	---	---							
BAI3	577	broad.mit.edu	37	6	70092801	70092802	+	Frame_Shift_Ins	INS	-	G	G	rs148278852		TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:70092801_70092802insG	uc003pev.3	+	31	4802_4803	c.4354_4355insG	c.(4354-4356)CGGfs	p.R1452fs	BAI3_uc010kak.2_Frame_Shift_Ins_p.R1452fs|BAI3_uc011dxx.1_Frame_Shift_Ins_p.R658fs	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1452	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGACAGATTTCGGGATATACCA	0.386													---	---	---							
MAS1	4142	broad.mit.edu	37	6	160328115	160328115	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr6:160328115delC	uc003qsz.2	+	1	142	c.128delC	c.(127-129)TCCfs	p.S43fs		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	43	Helical; Name=1; (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		ATGAGCATCTCCCCAGTGGGG	0.522													---	---	---							
Unknown	0	broad.mit.edu	37	7	57485011	57485011	+	IGR	DEL	G	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chr7:57485011delG								ZNF479 (277440 upstream) : ZNF716 (24872 downstream)																							AGTGCCGCCTGGGCCAGAGCA	0.687													---	---	---							
ZMYM3	9203	broad.mit.edu	37	X	70468637	70468638	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:70468637_70468638insG	uc004dzh.1	-	9	1722_1723	c.1635_1636insC	c.(1633-1638)CCCTGCfs	p.P545fs	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Frame_Shift_Ins_p.P545fs|ZMYM3_uc004dzj.1_Frame_Shift_Ins_p.P545fs	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	545_546	MYM-type 5.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CAGAAGCTGCAGGGTCGGGGAG	0.450													---	---	---							
Unknown	0	broad.mit.edu	37	X	97162197	97162197	+	IGR	DEL	A	-	-			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:97162197delA								DIAPH2 (306601 upstream) : None (None downstream)																							TTTCTAGATGAAAAGGCAAAA	0.378													---	---	---							
Unknown	0	broad.mit.edu	37	X	138529295	138529296	+	IGR	INS	-	A	A			TCGA-CR-7398-01A-11D-2012-08	TCGA-CR-7398-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	12c391dc-3138-4e73-bdc7-b06512dd0fa7	b36e8d02-d1c2-4cfe-879f-05e2dd5e2032	g.chrX:138529295_138529296insA								FGF13 (242110 upstream) : F9 (83599 downstream)																							CGCGCCTCCGCAGCGCGCCCAG	0.649													---	---	---							
