Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CACNA1E	777	genome.wustl.edu	37	1	181689471	181689471	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_000721.2	+1	reviewed	p.G627	1.000	588	0%	405	39.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RGL1	23179	genome.wustl.edu	37	1	183853981	183853981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_015149.3	+1	validated	p.T322I	1.000	304	0%	209	11%	17	5.8%	possibly_damaging(0.949)	deleterious(0.04)	deleterious(0.742)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CHI3L1	1116	genome.wustl.edu	37	1	203148685	203148685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001276.2	-1	reviewed	p.A347V	0.982	29	0%	40	45%	19	31.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
LAX1	54900	genome.wustl.edu	37	1	203734697	203734697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_017773.3	+1	validated	p.D2N	0.112	105	0%	72	18.1%	1	0%	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
ACVR1	90	genome.wustl.edu	37	2	158622506	158622506	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001105.4	-1	reviewed	p.A331	1.000	330	0%	233	36.1%	32	40.6%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
KCNH7	90134	genome.wustl.edu	37	2	163302758	163302758	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_033272.2	-1	reviewed	p.R442*	1.000	241	0%	173	38.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNH7	90134	genome.wustl.edu	37	2	163693047	163693047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_033272.2	-1	reviewed	p.G103R	1.000	134	0%	87	40.2%	0	-	possibly_damaging(0.91)	tolerated(0.11)	deleterious(0.634)	superfamily_PYP-like sensor domain (PAS domain)
SLC19A3	80704	genome.wustl.edu	37	2	228563476	228563476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_025243.3	-1	reviewed	p.V319I	0.995	44	0%	26	42.3%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
CTNNB1	1499	genome.wustl.edu	37	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001098209.1	+1	reviewed	p.I35S	1.000	174	0.6%	104	34.6%	140	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41277903	41277903	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001098209.1	+1	reviewed	p.Q623E	1.000	511	0%	441	41.5%	203	36.4%	benign(0.012)	tolerated(0.88)	neutral(0.001)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
C3orf77	375337	genome.wustl.edu	37	3	44284816	44284816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001145030.1	+1	validated	p.D273G	0.295	227	0%	151	33.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SETD2	29072	genome.wustl.edu	37	3	47108598	47108598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_014159.6	-1	reviewed	p.R2024P	1.000	622	0%	451	35.7%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GMPPB	29925	genome.wustl.edu	37	3	49759299	49759299	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_013334.2	-1	reviewed	p.V350	1.000	53	0%	47	34%	87	35.6%	-	-	-	superfamily_Trimer_LpxA_like
ZIC4	84107	genome.wustl.edu	37	3	147113700	147113700	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	ENST00000383075	-1	known	p.P209	0.998	111	0%	82	36.6%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_006218.2	+1	reviewed	p.R88Q	1.000	285	0%	192	18.8%	3	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178947827	178947827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_006218.2	+1	reviewed	p.C901F	1.000	399	0%	306	44.1%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like,PatternScan_PI3_4_KINASE_2
SEC24B	10427	genome.wustl.edu	37	4	110415815	110415815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_006323.2	+1	reviewed	p.P431T	0.125	213	0%	181	37%	10	0%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155226342	155226342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_017639.3	-1	validated	p.S1313P	0.137	165	0%	128	44.5%	1	0%	possibly_damaging(0.844)	tolerated(0.15)	deleterious(0.565)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
EDIL3	10085	genome.wustl.edu	37	5	83549931	83549931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_005711.3	-1	reviewed	p.D56A	0.996	224	0.4%	164	17.1%	11	0%	benign(0.114)	deleterious(0.01)	neutral(0.415)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
PCDHA2	56146	genome.wustl.edu	37	5	140175497	140175497	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_018905.2	+1	reviewed	p.Y316	0.993	203	0%	136	32.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HMGCLL1	54511	genome.wustl.edu	37	6	55378995	55378995	+	Splice_Site	SNP	C	C	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_019036.2	-1	validated	e6-1	1.000	193	0%	134	11.9%	0	-	-	-	-	-
TRA2A	29896	genome.wustl.edu	37	7	23552631	23552631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_013293.3	-1	reviewed	p.R136P	1.000	217	0%	184	34.2%	101	46.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FANCG	2189	genome.wustl.edu	37	9	35076819	35076819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_004629.1	-1	reviewed	p.G276R	0.231	104	0%	89	41.6%	8	75%	possibly_damaging(0.882)	tolerated(0.07)	deleterious(0.663)	HMMSmart_SM00028,superfamily_TPR-like
SLC28A3	64078	genome.wustl.edu	37	9	86920237	86920237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_022127.1	-1	provisional	p.T89I	0.000	380	0%	310	42.3%	1	0%	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
C10orf140	387640	genome.wustl.edu	37	10	21805466	21805467	+	In_Frame_Ins	INS	-	-	CCTCCT	rs112207161	byCluster;by1000genomes	TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_207371.3	-1	validated	p.429in_frame_insEE	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692886	89692886	+	Missense_Mutation	SNP	T	T	C	rs121909223		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	ENST00000371953	+1	known	p.C124R	1.000	570	0%	556	59.2%	52	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711885	89711886	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	ENST00000371953	+1	known	p.I168fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711887	89711890	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	CCCA	CCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	ENST00000371953	+1	known	p.P169fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
HIF1AN	55662	genome.wustl.edu	37	10	102296244	102296244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_017902.2	+1	validated	p.I85T	1.000	266	0%	299	27.8%	9	22.2%	possibly_damaging(0.438)	tolerated(0.08)	neutral(0.443)	superfamily_SSF51197
FAT3	120114	genome.wustl.edu	37	11	92533857	92533857	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001008781.2	+1	validated	p.R2560	0.994	230	0%	171	44.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
KLRK1	22914	genome.wustl.edu	37	12	10532351	10532351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_007360.2	-1	reviewed	p.M63I	0.766	213	0.5%	143	42.7%	4	50%	benign(0.15)	deleterious(0.03)	neutral(0.378)	NULL
RXFP2	122042	genome.wustl.edu	37	13	32365986	32365986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_130806.3	+1	reviewed	p.R397*	1.000	726	0%	551	38.7%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ANKRD11	29123	genome.wustl.edu	37	16	89355035	89355035	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_013275.4	-1	validated	p.D215	0.044	87	0%	81	38.3%	23	47.8%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CRK	1398	genome.wustl.edu	37	17	1340005	1340005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_016823.2	-1	reviewed	p.P229L	1.000	90	0%	92	45.7%	16	31.2%	possibly_damaging(0.746)	deleterious(0.05)	deleterious(0.619)	superfamily_SH3-domain
NLRP1	22861	genome.wustl.edu	37	17	5462617	5462617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_033004.3	-1	reviewed	p.I467V	0.256	98	0%	96	37.5%	3	0%	benign(0.017)	tolerated(0.23)	neutral(0.042)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
ST8SIA3	51046	genome.wustl.edu	37	18	55024422	55024422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_015879.2	+1	validated	p.T194M	1.000	203	0%	193	39.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Glyco_transf_29
ARID3A	1820	genome.wustl.edu	37	19	960103	960103	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_005224.2	+1	reviewed	p.L235	0.999	323	0%	290	34.5%	2	50%	-	-	-	HMMPfam_ARID,superfamily_ARID
FZR1	51343	genome.wustl.edu	37	19	3526277	3526281	+	Frame_Shift_Del	DEL	CTGCT	CTGCT	-	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	CTGCT	CTGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_001136198.1	+1	validated	p.L94fs	0.997:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15303203	15303203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_000435.2	-1	reviewed	p.P109S	0.975	14	0%	24	33.3%	46	19.5%	benign(0.002)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin
LOC100287226	100287226	genome.wustl.edu	37	19	22499899	22499899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	XM_002343636.1	+1	model	p.N1094S	0.000	100	0%	56	46.4%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CYP2S1	29785	genome.wustl.edu	37	19	41704752	41704752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_030622.6	+1	reviewed	p.A265T	0.002	50	0%	57	35.1%	0	-	possibly_damaging(0.797)	tolerated(0.17)	neutral(0.358)	HMMPfam_p450,superfamily_Cytochrome P450
DEFB129	140881	genome.wustl.edu	37	20	210318	210318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_080831.2	+1	validated	p.R153I	0.000	468	0%	379	40.1%	0	-	benign(0.076)	deleterious(0.02)	neutral(0.389)	NULL
MYH9	4627	genome.wustl.edu	37	22	36680169	36680169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_002473.4	-1	reviewed	p.R1912H	1.000	48	0%	67	41.8%	642	36.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Myosin_tail_1
TUBGCP6	85378	genome.wustl.edu	37	22	50659328	50659328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_020461.3	-1	reviewed	p.T1154A	0.000	61	0%	32	40.6%	32	34.3%	benign(0.039)	deleterious(0.01)	neutral(0.408)	HMMPfam_Spc97_Spc98
ENSG00000209082	0	genome.wustl.edu	37	MT	3281	3281	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	ENST00000386347	+1	novel	NULL	NULL	27	0.000	8	0.625	6737	92.4%	-	-	-	-
SMARCA1	6594	genome.wustl.edu	37	X	128649876	128649876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16R-01A-11D-A12J-09	TCGA-D1-A16R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97ae9c9d-a42c-4a3c-9fa8-3dd67c95af10	7f05d2f4-dfdd-475a-b622-bbed9394999a	NM_003069.3	-1	reviewed	p.P175H	1.000	397	0%	323	37.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
