Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC1	4363	genome.wustl.edu	37	16	16219730	16219730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	16219730	16219730	G	A	SNP	ABCC1	NM_004996.3	human	genbank	58_37c	+1	reviewed	missense	c.3781	p.V1261M	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACAD10	80724	genome.wustl.edu	37	12	112153693	112153693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	112153693	112153693	C	T	SNP	ACAD10	NM_001136538.1	human	genbank	58_37c	+1	reviewed	missense	c.1012	p.R338C	0.026	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_APH,HMMPfam_Hydrolase,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,superfamily_Acyl-CoA dehydrogenase NM domain-like,superfamily_Protein kinase-like (PK-like),superfamily_HAD-like	-	no_errors
APOB48R	55911	genome.wustl.edu	37	16	28506761	28506761	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	28506761	28506761	C	G	SNP	APOB48R	NM_018690.2	human	genbank	58_37c	+1	reviewed	missense	c.399	p.S133R	0.010	NULL	NULL	-	no_errors
AQP7	364	genome.wustl.edu	37	9	33385815	33385815	+	Missense_Mutation	SNP	T	T	C	rs62542745	byCluster	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	9	33385815	33385815	T	C	SNP	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	missense	c.575	p.Q192R	0.034	HMMPfam_MIP,superfamily_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ATXN1L	342371	genome.wustl.edu	37	16	71884325	71884325	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	71884325	71884325	C	G	SNP	ATXN1L	NM_001137675.2	human	genbank	58_37c	+1	validated	missense	c.682	p.P228A	1.000	NULL	HMMPfam_AXH,superfamily_Ataxin-1_HBP1	-	no_errors
C2orf16	84226	genome.wustl.edu	37	2	27801199	27801201	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	2	27801199	27801201	TTG	-	DEL	C2orf16	NM_032266.3	human	genbank	58_37c	+1	validated	in_frame_del	c.1760_1762	p.V588in_frame_del	0.002:0.002:0.072	NULL	NULL	-	no_errors
COG6	57511	genome.wustl.edu	37	13	40253739	40253739	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	13	40253739	40253739	C	G	SNP	COG6	NM_020751.2	human	genbank	58_37c	+1	reviewed	missense	c.605	p.T202R	1.000	HMMPfam_COG6	HMMPfam_COG6	-	no_errors
COL18A1	80781	genome.wustl.edu	37	21	46911228	46911228	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	21	46911228	46911228	C	T	SNP	COL18A1	NM_130444.2	human	genbank	58_37c	+1	reviewed	silent	c.3402	p.D1134	0.261	NULL	superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF959,HMMPfam_Endostatin,superfamily_C-type lectin-like,HMMPfam_Fz,HMMSmart_SM00063	-	no_errors
COL25A1	84570	genome.wustl.edu	37	4	110221778	110221778	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	4	110221778	110221778	T	G	SNP	COL25A1	NM_198721.1	human	genbank	58_37c	-1	validated	missense	c.328	p.I110L	0.985	NULL	HMMPfam_Collagen	-	no_errors
DAK	26007	genome.wustl.edu	37	11	61112999	61112999	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	61112999	61112999	G	C	SNP	DAK	NM_015533.3	human	genbank	58_37c	+1	reviewed	missense	c.1413	p.W471C	1.000	HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain	HMMPfam_Dak1,HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain,superfamily_DAK1/DegV-like	-	no_errors
DDX39	10212	genome.wustl.edu	37	19	14523994	14523994	+	Nonsense_Mutation	SNP	G	G	T	rs191833585	by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	14523994	14523994	G	T	SNP	DDX39	NM_005804.2	human	genbank	58_37c	-1	reviewed	nonsense	c.39	p.Y13*	0.247	NULL	HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
EIF3F	8665	genome.wustl.edu	37	11	8016560	8016560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	8016560	8016560	C	T	SNP	EIF3F	NM_003754.2	human	genbank	58_37c	+1	validated	silent	c.777	p.P259	1.000	NULL	HMMPfam_Mov34,HMMSmart_JAB_MPN	-	no_errors
ENSG00000221247	0	genome.wustl.edu	37	15	84949951	84949951	+	RNA	SNP	C	C	G	rs62029581	byCluster;byFrequency	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	15	84949951	84949951	C	G	SNP	ENSG00000221247	ENST00000408320	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.877	-	-	-	no_errors
ESPL1	9700	genome.wustl.edu	37	12	53680055	53680055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	53680055	53680055	C	G	SNP	ESPL1	NM_012291.4	human	genbank	58_37c	+1	validated	missense	c.3535	p.Q1179E	1.000	NULL	HMMPfam_Peptidase_C50	-	no_errors
ESRRG	2104	genome.wustl.edu	37	1	216896587	216896587	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	216896587	216896587	C	G	SNP	ESRRG	NM_001438.2	human	genbank	58_37c	-1	validated	missense	c.55	p.E19Q	1.000	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
FAM118B	79607	genome.wustl.edu	37	11	126110852	126110852	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	126110852	126110852	T	G	SNP	FAM118B	NM_024556.3	human	genbank	58_37c	+1	validated	missense	c.252	p.D84E	1.000	NULL	NULL	-	no_errors
FAM48B2	646212	genome.wustl.edu	37	X	24331338	24331338	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	X	24331338	24331338	G	A	SNP	FAM48B2	NM_001136233.1	human	genbank	58_37c	-1	provisional	missense	c.95	p.A32V	0.000	NULL	NULL	-	no_errors
FAM96B	51647	genome.wustl.edu	37	16	66966114	66966114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	66966114	66966114	G	A	SNP	FAM96B	NM_016062.2	human	genbank	58_37c	-1	validated	missense	c.484	p.R162C	0.980	NULL	HMMPfam_DUF59	-	no_errors
FBN1	2200	genome.wustl.edu	37	15	48780678	48780678	+	Missense_Mutation	SNP	C	C	T	rs137854481	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	15	48780678	48780678	C	T	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	missense	c.3095	p.C1032Y	1.000	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FERD3L	222894	genome.wustl.edu	37	7	19184661	19184661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	7	19184661	19184661	G	A	SNP	FERD3L	NM_152898.2	human	genbank	58_37c	-1	validated	missense	c.325	p.R109C	1.000	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
FSIP2	285135	genome.wustl.edu	37	2	186671458	186671459	+	In_Frame_Ins	INS	-	-	AAGATA	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	2	186671458	186671459	-	AAGATA	INS	FSIP2	ENST00000424728	human	ensembl	58_37c	+1	known	in_frame_ins	c.17425_17426	p.5811in_frame_insKD	0.000:0.000	NULL	NULL	-	no_errors
FYCO1	79443	genome.wustl.edu	37	3	46026346	46026347	+	Splice_Site	INS	-	-	CC	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	3	46026346	46026347	-	CC	INS	FYCO1	NM_024513.2	human	genbank	58_37c	-1	validated	splice_site_ins	c.55+1_55+1	e1+1	0.998:1.000	-	-	-	no_errors
GRIN2B	2904	genome.wustl.edu	37	12	13716276	13716276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	13716276	13716276	C	T	SNP	GRIN2B	NM_000834.3	human	genbank	58_37c	-1	reviewed	missense	c.3896	p.R1299H	1.000	HMMPfam_NMDAR2_C	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GUCY2C	2984	genome.wustl.edu	37	12	14804406	14804406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	14804406	14804406	C	A	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	missense	c.1645	p.G549C	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
INSR	3643	genome.wustl.edu	37	19	7267521	7267521	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	7267521	7267521	T	C	SNP	INSR	NM_000208.2	human	genbank	58_37c	-1	reviewed	missense	c.487	p.I163V	0.997	HMMPfam_Recep_L_domain,superfamily_L domain-like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_L domain-like	-	no_errors
KIAA0141	9812	genome.wustl.edu	37	5	141307719	141307725	+	Frame_Shift_Del	DEL	ACTCTGG	ACTCTGG	-	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	ACTCTGG	ACTCTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	141307719	141307725	ACTCTGG	-	DEL	KIAA0141	NM_001142603.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.268_274	p.T90fs	0.983:0.979:0.661:0.941:0.987:0.986:0.865	NULL	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901	-	no_errors
KIAA0195	9772	genome.wustl.edu	37	17	73486391	73486391	+	Missense_Mutation	SNP	G	G	T	rs148424621	by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	73486391	73486391	G	T	SNP	KIAA0195	NM_014738.4	human	genbank	58_37c	+1	validated	missense	c.1031	p.R344L	0.997	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KIAA0467	23334	genome.wustl.edu	37	1	43892390	43892390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	43892390	43892390	C	T	SNP	KIAA0467	NM_015284.2	human	genbank	58_37c	+1	predicted	silent	c.522	p.A174	0.991	NULL	NULL	-	no_errors
KRT17	3872	genome.wustl.edu	37	17	39780482	39780482	+	Missense_Mutation	SNP	G	G	A	rs58730926	byCluster	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	39780482	39780482	G	A	SNP	KRT17	NM_000422.2	human	genbank	58_37c	-1	reviewed	missense	c.280	p.R94C	1.000	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMA2	3908	genome.wustl.edu	37	6	129807718	129807718	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	129807718	129807718	C	A	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	missense	c.7849	p.L2617M	0.348	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LDLRAD3	143458	genome.wustl.edu	37	11	36119907	36119907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	36119907	36119907	G	A	SNP	LDLRAD3	NM_174902.2	human	genbank	58_37c	+1	provisional	missense	c.350	p.R117H	1.000	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich	-	no_errors
LOC647288	647288	genome.wustl.edu	37	13	75814070	75814070	+	RNA	SNP	C	C	G	rs61960513	byCluster;byFrequency;by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	13	75814070	75814070	C	G	SNP	LOC647288	XR_079506.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.034	-	-	-	pseudogene
LRP1	4035	genome.wustl.edu	37	12	57569343	57569343	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	57569343	57569343	C	G	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	silent	c.3648	p.P1216	0.001	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LRP1	4035	genome.wustl.edu	37	12	57587027	57587027	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	57587027	57587027	C	G	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	missense	c.7624	p.L2542V	1.000	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LUZP1	7798	genome.wustl.edu	37	1	23419915	23419915	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	23419915	23419915	G	C	SNP	LUZP1	NM_001142546.1	human	genbank	58_37c	-1	reviewed	missense	c.840	p.N280K	1.000	NULL	HMMPfam_CortBP2	-	no_errors
MAP3K13	9175	genome.wustl.edu	37	3	185191457	185191457	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	3	185191457	185191457	G	T	SNP	MAP3K13	NM_004721.3	human	genbank	58_37c	+1	reviewed	nonsense	c.2338	p.E780*	0.021	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49418417	49418417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	49418417	49418417	C	A	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.15996	p.M5332I	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MUC1	4582	genome.wustl.edu	37	1	155160204	155160204	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	155160204	155160204	C	A	SNP	MUC1	NM_002456.4	human	genbank	58_37c	-1	reviewed	missense	c.469	p.V157F	0.000	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671	-	no_errors
MYH11	4629	genome.wustl.edu	37	16	15931822	15931822	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	15931822	15931822	G	T	SNP	MYH11	NM_001040114.1	human	genbank	58_37c	-1	reviewed	silent	c.288	p.L96	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NKAIN2	154215	genome.wustl.edu	37	6	124979382	124979382	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	124979382	124979382	G	T	SNP	NKAIN2	NM_001040214.1	human	genbank	58_37c	+1	reviewed	missense	c.324	p.W108C	1.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors
NLRP7	199713	genome.wustl.edu	37	19	55447631	55447631	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	55447631	55447631	C	G	SNP	NLRP7	NM_001127255.1	human	genbank	58_37c	-1	reviewed	silent	c.2298	p.L766	0.072	superfamily_RNI-like	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ODZ2	57451	genome.wustl.edu	37	5	167674943	167674943	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	167674943	167674943	C	A	SNP	ODZ2	NM_001122679.1	human	genbank	58_37c	+1	inferred	silent	c.6972	p.T2324	0.953	NULL	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin	-	no_errors
OR51A7	119687	genome.wustl.edu	37	11	4928748	4928748	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	4928748	4928748	A	T	SNP	OR51A7	NM_001004749.1	human	genbank	58_37c	+1	provisional	missense	c.149	p.K50M	0.005	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OSMR	9180	genome.wustl.edu	37	5	38918971	38918971	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	38918971	38918971	G	C	SNP	OSMR	NM_003999.2	human	genbank	58_37c	+1	reviewed	missense	c.1392	p.K464N	0.913	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
PCDHB8	56128	genome.wustl.edu	37	5	140559596	140559596	+	Missense_Mutation	SNP	T	T	G	rs2697541	byCluster;byFrequency;by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	140559596	140559596	T	G	SNP	PCDHB8	NM_019120.2	human	genbank	58_37c	+1	reviewed	missense	c.1981	p.L661V	0.998	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHF20L1	51105	genome.wustl.edu	37	8	133849997	133849997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	8	133849997	133849997	G	A	SNP	PHF20L1	NM_016018.4	human	genbank	58_37c	+1	validated	missense	c.2132	p.G711E	1.000	superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00743,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
PHLPP2	23035	genome.wustl.edu	37	16	71683709	71683709	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	16	71683709	71683709	C	T	SNP	PHLPP2	NM_015020.2	human	genbank	58_37c	-1	validated	missense	c.3056	p.S1019N	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00369,HMMPfam_PP2C,HMMSmart_SM00364,superfamily_PH domain-like,superfamily_L domain-like	-	no_errors
PIPOX	51268	genome.wustl.edu	37	17	27380441	27380441	+	Missense_Mutation	SNP	G	G	A	rs142705261	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	27380441	27380441	G	A	SNP	PIPOX	NM_016518.2	human	genbank	58_37c	+1	validated	missense	c.488	p.R163Q	0.866	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
PLIN4	0	genome.wustl.edu	37	19	4508835	4508835	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	4508835	4508835	T	A	SNP	PLIN4	NM_001080400.1	human	genbank	58_37c	-1	provisional	missense	c.3605	p.H1202L	0.761	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
PRDM10	56980	genome.wustl.edu	37	11	129827748	129827748	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	129827748	129827748	C	A	SNP	PRDM10	NM_020228.2	human	genbank	58_37c	-1	reviewed	missense	c.127	p.V43F	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PSMD9	5715	genome.wustl.edu	37	12	122326782	122326782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	122326782	122326782	G	A	SNP	PSMD9	NM_002813.4	human	genbank	58_37c	+1	reviewed	missense	c.20	p.R7K	0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89717742	89717743	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	10	89717742	89717743	-	G	INS	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_ins	c.767_768	p.F257fs	1.000:0.979	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB17	64284	genome.wustl.edu	37	2	238484088	238484088	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	2	238484088	238484088	C	T	SNP	RAB17	NM_022449.3	human	genbank	58_37c	-1	validated	silent	c.471	p.L157	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAPGEF1	2889	genome.wustl.edu	37	9	134503455	134503463	+	In_Frame_Del	DEL	CTCTGTGCG	CTCTGTGCG	-	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	CTCTGTGCG	CTCTGTGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	9	134503455	134503463	CTCTGTGCG	-	DEL	RAPGEF1	NM_198679.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1049_1041	p.YAQRRLS347in_frame_del*	1.000:1.000:1.000:1.000:1.000:0.918:0.921:0.572:0.556	NULL	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF,PatternScan_RASGEF	-	no_errors
RICTOR	253260	genome.wustl.edu	37	5	39021230	39021230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	39021230	39021230	C	T	SNP	RICTOR	NM_152756.3	human	genbank	58_37c	-1	validated	missense	c.106	p.D36N	1.000	superfamily_ARM repeat	HMMPfam_RasGEF_N,superfamily_ARM repeat	-	no_errors
ROR1	4919	genome.wustl.edu	37	1	64624796	64624796	+	Missense_Mutation	SNP	C	C	T	rs139114952	byCluster;byFrequency;by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	64624796	64624796	C	T	SNP	ROR1	NM_005012.2	human	genbank	58_37c	+1	validated	missense	c.1307	p.S436L	0.415	NULL	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Kringle-like,PatternScan_KRINGLE_1,HMMPfam_Fz,superfamily_Immunoglobulin	-	no_errors
SENP6	26054	genome.wustl.edu	37	6	76380373	76380373	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	76380373	76380373	C	A	SNP	SENP6	ENST00000503501	human	ensembl	58_37c	+1	known	nonsense	c.176	p.S59*	1.000	NULL	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SFRS17A	8227	genome.wustl.edu	37	X	1712955	1712955	+	Silent	SNP	G	G	A	rs140507021	byCluster;by1000genomes	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	X	1712955	1712955	G	A	SNP	SFRS17A	NM_005088.2	human	genbank	58_37c	+1	validated	silent	c.600	p.T200	0.988	NULL	NULL	-	no_errors
SLC22A11	55867	genome.wustl.edu	37	11	64329577	64329577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	64329577	64329577	G	A	SNP	SLC22A11	NM_018484.2	human	genbank	58_37c	+1	reviewed	missense	c.599	p.R200Q	0.996	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC35A1	10559	genome.wustl.edu	37	6	88218170	88218170	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	6	88218170	88218170	G	C	SNP	SLC35A1	NM_006416.4	human	genbank	58_37c	+1	reviewed	missense	c.607	p.D203H	1.000	HMMPfam_Nuc_sug_transp	HMMPfam_Nuc_sug_transp,superfamily_SSF103481	-	no_errors
SLC6A18	348932	genome.wustl.edu	37	5	1239601	1239601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	1239601	1239601	G	A	SNP	SLC6A18	NM_182632.2	human	genbank	58_37c	+1	validated	missense	c.769	p.A257T	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
ST3GAL4	6484	genome.wustl.edu	37	11	126283912	126283912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	11	126283912	126283912	G	A	SNP	ST3GAL4	NM_006278.1	human	genbank	58_37c	+1	provisional	missense	c.960	p.M320I	0.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
SVIL	6840	genome.wustl.edu	37	10	29775379	29775379	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	10	29775379	29775379	T	G	SNP	SVIL	NM_021738.2	human	genbank	58_37c	-1	reviewed	missense	c.4593	p.K1531N	1.000	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
TARBP2	6895	genome.wustl.edu	37	12	53895208	53895208	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	53895208	53895208	C	T	SNP	TARBP2	NM_134323.1	human	genbank	58_37c	+1	reviewed	nonsense	c.16	p.Q6*	1.000	NULL	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	-	no_errors
TMBIM4	51643	genome.wustl.edu	37	12	66531907	66531907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	66531907	66531907	C	T	SNP	TMBIM4	NM_016056.2	human	genbank	58_37c	-1	validated	missense	c.550	p.A184T	1.000	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578508	7578508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	17	7578508	7578508	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.422	p.C141Y	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPH2	121278	genome.wustl.edu	37	12	72338118	72338118	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	72338118	72338118	G	C	SNP	TPH2	NM_173353.3	human	genbank	58_37c	+1	reviewed	silent	c.300	p.R100	1.000	HMMPfam_ACT,superfamily_SSF55021	HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021	-	no_errors
TSKS	60385	genome.wustl.edu	37	19	50245191	50245191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	50245191	50245191	C	T	SNP	TSKS	NM_021733.1	human	genbank	58_37c	-1	reviewed	missense	c.1448	p.G483D	0.998	NULL	NULL	-	no_errors
XRCC6BP1	91419	genome.wustl.edu	37	12	58347387	58347387	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	12	58347387	58347387	A	C	SNP	XRCC6BP1	NM_033276.2	human	genbank	58_37c	+1	provisional	splice_site	c.454-2	e5-2	1.000	-	-	-	no_errors
ZCCHC11	23318	genome.wustl.edu	37	1	52991318	52991318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	1	52991318	52991318	G	A	SNP	ZCCHC11	NM_001009881.1	human	genbank	58_37c	-1	validated	missense	c.635	p.S212F	0.975	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Retrovirus zinc finger-like domains,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
ZFR	51663	genome.wustl.edu	37	5	32356003	32356003	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	5	32356003	32356003	G	C	SNP	ZFR	NM_016107.3	human	genbank	58_37c	-1	validated	missense	c.3088	p.L1030V	1.000	HMMPfam_DZF,HMMSmart_DZF	HMMSmart_ZnF_U1,HMMPfam_DZF,HMMSmart_DZF,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF526	116115	genome.wustl.edu	37	19	42729694	42729694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	42729694	42729694	G	A	SNP	ZNF526	NM_133444.1	human	genbank	58_37c	+1	provisional	missense	c.1139	p.R380Q	0.990	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF551	90233	genome.wustl.edu	37	19	58199532	58199532	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	58199532	58199532	T	G	SNP	ZNF551	NM_138347.3	human	genbank	58_37c	+1	validated	missense	c.1841	p.L614R	0.017	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNRF4	148066	genome.wustl.edu	37	19	5456398	5456398	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A13Z-01A-11D-A10Y-09	TCGA-D8-A13Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c3722c97-80f5-4eea-bf50-5a214134bbcc	9b582ef6-8120-4a7a-be49-2c6c0d11713c	19	5456398	5456398	T	A	SNP	ZNRF4	NM_181710.3	human	genbank	58_37c	+1	validated	missense	c.896	p.V299D	0.002	NULL	HMMSmart_SM00184,HMMPfam_PA,PatternScan_EGF_2,HMMPfam_zf-C3HC4,superfamily_Transferrin receptor ectodomain apical domain,superfamily_RING/U-box	-	no_errors
