Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACO1	0	genome.wustl.edu	37	9	32436286	32436286	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	9	32436286	32436286	G	T	SNP	ACO1	NM_002197.2	human	genbank	58_37c	+1	reviewed	missense	c.2138	p.R713L	1.000	HMMPfam_Aconitase_C,superfamily_Aconitase	HMMPfam_Aconitase_C,HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain,superfamily_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2	-	no_errors
ARAP3	0	genome.wustl.edu	37	5	141049557	141049557	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	5	141049557	141049557	G	A	SNP	ARAP3	NM_022481.5	human	genbank	58_37c	-1	reviewed	silent	c.2181	p.L727	0.998	HMMSmart_PH,superfamily_SSF50729	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMSmart_SAM,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF50729	-	no_errors
ATXN2L	0	genome.wustl.edu	37	16	28847726	28847726	+	Silent	SNP	G	G	T	rs147236636	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	16	28847726	28847726	G	T	SNP	ATXN2L	NM_148414.1	human	genbank	58_37c	+1	reviewed	silent	c.3219	p.S1073	1.000	NULL	HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors
C1orf173	0	genome.wustl.edu	37	1	75055486	75055486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	75055486	75055486	G	A	SNP	C1orf173	NM_001002912.4	human	genbank	58_37c	-1	validated	missense	c.2005	p.L669F	0.002	NULL	NULL	-	no_errors
CASP8AP2	0	genome.wustl.edu	37	6	90577712	90577728	+	Frame_Shift_Del	DEL	CTTTGCCCAGACATGGA	CTTTGCCCAGACATGGA	-	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	CTTTGCCCAGACATGGA	CTTTGCCCAGACATGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	6	90577712	90577728	CTTTGCCCAGACATGGA	-	DEL	CASP8AP2	NM_001137667.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.4703_4719	p.S1568fs	0.007:0.006:0.006:0.002:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.001:0.636	NULL	superfamily_Homeodomain-like	-	no_stop_codon:bad_bp_length_for_coding_region
DYNC1H1	0	genome.wustl.edu	37	14	102449530	102449530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	102449530	102449530	G	A	SNP	DYNC1H1	NM_001376.4	human	genbank	58_37c	+1	reviewed	missense	c.1136	p.R379H	1.000	HMMPfam_DHC_N1	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540	-	no_errors
EHD2	0	genome.wustl.edu	37	19	48239730	48239730	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	19	48239730	48239730	G	C	SNP	EHD2	NM_014601.3	human	genbank	58_37c	+1	reviewed	silent	c.1020	p.A340	0.795	NULL	HMMSmart_SM00027,HMMPfam_Dynamin_N,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000118976	0	genome.wustl.edu	37	12	3948659	3948659	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	12	3948659	3948659	C	T	SNP	ENSG00000118976	ENST00000237841	human	ensembl	58_37c	+1	known	silent	c.192	p.V64	0.228	HMMPfam_OTU,superfamily_SSF54001	HMMPfam_OTU,superfamily_SSF54001	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2701	2701	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	MT	2701	2701	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000231008	0	genome.wustl.edu	37	14	106733611	106733611	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	106733611	106733611	G	A	SNP	ENSG00000231008	ENST00000443661	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000233913	0	genome.wustl.edu	37	5	168043641	168043641	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	5	168043641	168043641	C	T	SNP	ENSG00000233913	ENST00000421908	human	ensembl	58_37c	+1	known	silent	c.285	p.H95	1.000	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e,PatternScan_RIBOSOMAL_L10E	-	no_errors
FAM69C	0	genome.wustl.edu	37	18	72114301	72114301	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	18	72114301	72114301	C	A	SNP	FAM69C	NM_001044369.2	human	genbank	58_37c	-1	validated	missense	c.416	p.G139V	0.000	NULL	NULL	-	no_errors
GPR3	0	genome.wustl.edu	37	1	27721113	27721113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	27721113	27721113	G	A	SNP	GPR3	NM_005281.2	human	genbank	58_37c	+1	provisional	missense	c.811	p.D271N	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
IGHV3-21	0	genome.wustl.edu	37	14	106691797	106691799	+	In_Frame_Del	DEL	TAA	TAA	-	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	TAA	TAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	106691797	106691799	TAA	-	DEL	IGHV3-21	ENST00000390607	human	ensembl	58_37c	-1	known	in_frame_del	c.227_225	p.Y76in_frame_del	0.000:0.000:0.000	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
ITPR1	0	genome.wustl.edu	37	3	4847896	4847896	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	3	4847896	4847896	A	G	SNP	ITPR1	NM_001099952.2	human	genbank	58_37c	+1	reviewed	missense	c.7073	p.Y2358C	1.000	HMMPfam_Ion_trans	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KDM3B	0	genome.wustl.edu	37	5	137766020	137766020	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	5	137766020	137766020	G	A	SNP	KDM3B	NM_016604.3	human	genbank	58_37c	+1	validated	missense	c.4976	p.R1659H	1.000	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
KIF20B	0	genome.wustl.edu	37	10	91497663	91497664	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	10	91497663	91497664	-	A	INS	KIF20B	NM_016195.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.2945_2946	p.N983fs	0.000:0.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLK3	0	genome.wustl.edu	37	19	51361806	51361806	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	19	51361806	51361806	C	T	SNP	KLK3	NM_001648.2	human	genbank	58_37c	+1	reviewed	silent	c.585	p.F195	0.075	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC100130599	0	genome.wustl.edu	37	21	46122300	46122301	+	In_Frame_Ins	INS	-	-	CCAGCGCCTGCCAATCAGGCTGCA	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	21	46122300	46122301	-	CCAGCGCCTGCCAATCAGGCTGCA	INS	LOC100130599	XM_002343756.1	human	genbank	58_37c	+1	model	in_frame_ins	c.556_557	p.188in_frame_insACQSGCTS	0.665:0.600	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC100287206	0	genome.wustl.edu	37	20	47258614	47258614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	20	47258614	47258614	G	A	SNP	LOC100287206	XM_002343709.1	human	genbank	58_37c	+1	model	silent	c.876	p.R292	0.044	NULL	NULL	-	no_errors
LOC100288142	0	genome.wustl.edu	37	1	148343792	148343792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	148343792	148343792	C	A	SNP	LOC100288142	XM_002344444.1	human	genbank	58_37c	-1	model	missense	c.295	p.V99F	0.000	NULL	HMMPfam_DUF1220	-	no_errors
MAP4K5	0	genome.wustl.edu	37	14	50915497	50915497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	14	50915497	50915497	C	T	SNP	MAP4K5	NM_006575.3	human	genbank	58_37c	-1	reviewed	missense	c.1069	p.E357K	1.000	superfamily_Protein kinase-like (PK-like)	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MUC20	0	genome.wustl.edu	37	3	195452649	195452649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	3	195452649	195452649	C	T	SNP	MUC20	ENST00000436408	human	ensembl	58_37c	+1	known	missense	c.1175	p.P392L	0.001	NULL	NULL	-	no_errors
OR10Z1	0	genome.wustl.edu	37	1	158576343	158576343	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	158576343	158576343	C	G	SNP	OR10Z1	NM_001004478.1	human	genbank	58_37c	+1	provisional	missense	c.115	p.L39V	0.210	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2W5	0	genome.wustl.edu	37	1	247655261	247655261	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	247655261	247655261	C	G	SNP	OR2W5	NM_001004698.2	human	genbank	58_37c	+1	validated	missense	c.832	p.L278V	0.993	NULL	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RARA	0	genome.wustl.edu	37	17	38510603	38510603	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	17	38510603	38510603	T	C	SNP	RARA	NM_000964.2	human	genbank	58_37c	+1	validated	missense	c.857	p.F286S	1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RTN4IP1	0	genome.wustl.edu	37	6	107070756	107070756	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	6	107070756	107070756	C	A	SNP	RTN4IP1	NM_032730.4	human	genbank	58_37c	-1	reviewed	silent	c.363	p.R121	0.999	superfamily_GroES-like,HMMPfam_ADH_N	PatternScan_QOR_ZETA_CRYSTAL,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
SHISA4	0	genome.wustl.edu	37	1	201859604	201859604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	201859604	201859604	G	A	SNP	SHISA4	NM_198149.2	human	genbank	58_37c	+1	validated	missense	c.268	p.A90T	1.000	NULL	NULL	-	no_errors
SHROOM4	0	genome.wustl.edu	37	X	50350728	50350729	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	X	50350728	50350729	-	TCC	INS	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3414_3413	p.1142in_frame_insE	0.000:0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SPATA17	0	genome.wustl.edu	37	1	217955553	217955553	+	Missense_Mutation	SNP	G	G	A	rs145637899	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	1	217955553	217955553	G	A	SNP	SPATA17	NM_138796.2	human	genbank	58_37c	+1	provisional	missense	c.761	p.R254H	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TUBG1	0	genome.wustl.edu	37	17	40762203	40762203	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1Y2-01A-11D-A159-09	TCGA-D8-A1Y2-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9dbf62eb-0de7-4410-b44b-fdf59026d8e6	0d5f1609-7930-4549-8c76-395e0700dc4b	17	40762203	40762203	G	A	SNP	TUBG1	NM_001070.4	human	genbank	58_37c	+1	reviewed	missense	c.127	p.E43K	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
