Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGTPBP1	0	genome.wustl.edu	37	9	88272487	88272487	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	9	88272487	88272487	G	A	SNP	AGTPBP1	NM_015239.2	human	genbank	58_37c	-1	validated	missense	c.772	p.R258C	1.000	superfamily_ARM-type_fold	HMMPfam_Peptidase_M14,superfamily_ARM-type_fold,superfamily_SSF53187	-	no_errors
ASAP2	0	genome.wustl.edu	37	2	9467980	9467980	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	2	9467980	9467980	A	G	SNP	ASAP2	NM_003887.2	human	genbank	58_37c	+1	reviewed	missense	c.626	p.K209R	1.000	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_PH domain-like	-	no_errors
CCKAR	0	genome.wustl.edu	37	4	26491823	26491823	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	26491823	26491823	C	G	SNP	CCKAR	NM_000730.2	human	genbank	58_37c	-1	reviewed	missense	c.67	p.E23Q	0.649	HMMPfam_CholecysA-Rec_N	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_CholecysA-Rec_N,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CEL	0	genome.wustl.edu	37	9	135944591	135944591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	9	135944591	135944591	G	A	SNP	CEL	NM_001807.3	human	genbank	58_37c	+1	reviewed	missense	c.1240	p.V414I	0.991	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_alpha/beta-Hydrolases	-	no_errors
CENPW	0	genome.wustl.edu	37	6	126669611	126669611	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	126669611	126669611	G	A	SNP	CENPW	NM_001012507.2	human	genbank	58_37c	+1	validated	splice_site	c.241-1	e3-1	1.000	-	-	-	no_errors
CTU2	0	genome.wustl.edu	37	16	88780635	88780636	+	Frame_Shift_Ins	INS	-	-	GTGT	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	16	88780635	88780636	-	GTGT	INS	CTU2	NM_001012759.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1097_1098	p.T367fs	1.000:1.000	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
DENND4B	0	genome.wustl.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	1	153907279	153907287	CTGCTGCTG	-	DEL	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.792:0.815:0.846:0.964:0.974:0.990:0.990:0.986:0.989	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
ENSG00000198938	0	genome.wustl.edu	37	MT	9266	9266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	MT	9266	9266	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	silent	c.60	p.G20	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	3200	3200	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	MT	3200	3200	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69441043	69441043	+	Silent	SNP	C	C	T	rs71223554	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	9	69441043	69441043	C	T	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.531	p.T177	0.061	NULL	NULL	-	no_errors
FAM48B1	0	genome.wustl.edu	37	X	24382374	24382376	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	X	24382374	24382376	TGC	-	DEL	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	in_frame_del	c.1497_1499	p.A503in_frame_del	0.007:0.004:0.003	NULL	NULL	-	no_errors
FBXO34	0	genome.wustl.edu	37	14	55817206	55817206	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	14	55817206	55817206	T	C	SNP	FBXO34	NM_017943.3	human	genbank	58_37c	+1	validated	missense	c.98	p.V33A	0.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
IGFBP4	0	genome.wustl.edu	37	17	38610201	38610201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	17	38610201	38610201	G	A	SNP	IGFBP4	NM_001552.2	human	genbank	58_37c	+1	reviewed	missense	c.529	p.E177K	1.000	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1,HMMPfam_IGFBP,HMMSmart_IB,superfamily_Grow_fac_recept,PatternScan_IGFBP_N_1	-	no_errors
KCNAB1	0	genome.wustl.edu	37	3	156249278	156249278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	156249278	156249278	G	A	SNP	KCNAB1	NM_172160.2	human	genbank	58_37c	+1	reviewed	missense	c.1162	p.A388T	1.000	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase	-	no_errors
KIAA1462	0	genome.wustl.edu	37	10	30336682	30336683	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	10	30336682	30336683	-	G	INS	KIAA1462	NM_020848.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.60_59	p.A21fs	0.000:0.001	NULL	NULL	-	no_errors
KIAA2022	0	genome.wustl.edu	37	X	73960046	73960046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	X	73960046	73960046	C	T	SNP	KIAA2022	NM_001008537.2	human	genbank	58_37c	-1	validated	missense	c.4346	p.R1449H	1.000	NULL	NULL	-	no_errors
KIF4B	0	genome.wustl.edu	37	5	154396151	154396151	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	154396151	154396151	A	G	SNP	KIF4B	NM_001099293.1	human	genbank	58_37c	+1	provisional	missense	c.2732	p.E911G	0.772	NULL	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
LRRC16A	0	genome.wustl.edu	37	6	25450164	25450164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	25450164	25450164	G	A	SNP	LRRC16A	NM_017640.5	human	genbank	58_37c	+1	validated	missense	c.410	p.R137H	1.000	NULL	superfamily_SSF52047	-	no_errors
MDGA1	0	genome.wustl.edu	37	6	37620076	37620076	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	37620076	37620076	G	C	SNP	MDGA1	NM_153487.3	human	genbank	58_37c	-1	validated	missense	c.1023	p.I341M	1.000	NULL	PatternScan_NITROGENASE_1_1,HMMPfam_MAM,HMMSmart_SM00137,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MYLK4	0	genome.wustl.edu	37	6	2689172	2689172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	2689172	2689172	G	A	SNP	MYLK4	NM_001012418.3	human	genbank	58_37c	-1	validated	missense	c.254	p.P85L	0.991	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NCRNA00164	0	genome.wustl.edu	37	2	133015302	133015302	+	RNA	SNP	T	T	G	rs75692539	byCluster	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	2	133015302	133015302	T	G	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.013	-	-	-	pseudogene
NCRNA00164	0	genome.wustl.edu	37	2	133015436	133015436	+	RNA	SNP	C	C	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	2	133015436	133015436	C	G	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.002	-	-	-	pseudogene
NXPH1	0	genome.wustl.edu	37	7	8790657	8790657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	7	8790657	8790657	C	T	SNP	NXPH1	NM_152745.2	human	genbank	58_37c	+1	reviewed	missense	c.74	p.T25M	1.000	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854555	+	In_Frame_Del	DEL	TCCTCCTCCTCCTCC	TCCTCCTCCTCCTCC	-	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	TCCTCCTCCTCCTCC	TCCTCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	12	18854541	18854555	TCCTCCTCCTCCTCC	-	DEL	PLCZ1	ENST00000447925	human	ensembl	58_37c	-1	known	in_frame_del	c.257_243	p.EEEEE81in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024:0.025:0.024:0.021:0.019:0.016:0.012	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PLSCR2	0	genome.wustl.edu	37	3	146171892	146171892	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	146171892	146171892	G	A	SNP	PLSCR2	NM_020359.1	human	genbank	58_37c	-1	provisional	missense	c.380	p.P127L	0.704	HMMPfam_Scramblase	HMMPfam_Scramblase	-	no_errors
POU4F2	0	genome.wustl.edu	37	4	147561811	147561811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	147561811	147561811	G	A	SNP	POU4F2	NM_004575.2	human	genbank	58_37c	+1	validated	missense	c.1081	p.E361K	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
RASGEF1C	0	genome.wustl.edu	37	5	179563506	179563506	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	179563506	179563506	G	A	SNP	RASGEF1C	NM_175062.3	human	genbank	58_37c	-1	validated	missense	c.310	p.R104W	1.000	HMMPfam_RasGEF_N,superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF	-	no_errors
RPA3	0	genome.wustl.edu	37	7	7680043	7680043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	7	7680043	7680043	C	T	SNP	RPA3	NM_002947.3	human	genbank	58_37c	-1	validated	missense	c.7	p.D3N	1.000	HMMPfam_Rep_fac-A_3,superfamily_Nucleic acid-binding proteins	HMMPfam_Rep_fac-A_3,superfamily_Nucleic acid-binding proteins	-	no_errors
SEMA6D	0	genome.wustl.edu	37	15	48052559	48052559	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	15	48052559	48052559	G	A	SNP	SEMA6D	NM_153618.1	human	genbank	58_37c	+1	reviewed	silent	c.168	p.R56	1.000	superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SHANK2	0	genome.wustl.edu	37	11	70507831	70507831	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	11	70507831	70507831	C	G	SNP	SHANK2	NM_012309.3	human	genbank	58_37c	-1	reviewed	missense	c.42	p.M14I	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology	-	no_errors
ST6GALNAC5	0	genome.wustl.edu	37	1	77528749	77528749	+	Missense_Mutation	SNP	G	G	A	rs144604997	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	1	77528749	77528749	G	A	SNP	ST6GALNAC5	NM_030965.1	human	genbank	58_37c	+1	provisional	missense	c.869	p.R290H	1.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
TSHZ2	0	genome.wustl.edu	37	20	51872712	51872712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	20	51872712	51872712	C	T	SNP	TSHZ2	NM_173485.4	human	genbank	58_37c	+1	validated	silent	c.2715	p.Y905	1.000	HMMPfam_Homeobox,HMMSmart_HOX	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
WDR81	0	genome.wustl.edu	37	17	1631341	1631343	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	17	1631341	1631343	GAG	-	DEL	WDR81	ENST00000409644	human	ensembl	58_37c	+1	known	in_frame_del	c.3088_3090	p.E1033in_frame_del	0.999:1.000:1.000	superfamily_WD40 repeat-like	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_FBPASE	-	no_errors
ZNF721	0	genome.wustl.edu	37	4	437075	437075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	437075	437075	C	T	SNP	ZNF721	NM_133474.2	human	genbank	58_37c	-1	validated	missense	c.1181	p.C394Y	0.998	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
