Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS7	11173	genome.wustl.edu	37	15	79069734	79069734	+	Missense_Mutation	SNP	G	G	T	rs7161774	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	15	79069734	79069734	G	T	SNP	ADAMTS7	ENST00000456326	human	ensembl	58_37c	-1	known	missense	c.1519	p.Q507K	0.000	NULL	"HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AHNAK	79026	genome.wustl.edu	37	11	62284554	62284554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	62284554	62284554	G	A	SNP	AHNAK	NM_001620.1	human	genbank	58_37c	-1	validated	missense	c.17335	p.R5779C	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC	-	no_errors
ASCL3	56676	genome.wustl.edu	37	11	8959451	8959451	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	8959451	8959451	G	A	SNP	ASCL3	NM_020646.1	human	genbank	58_37c	-1	provisional	silent	c.258	p.C86	0.917	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
BTD	686	genome.wustl.edu	37	3	15643051	15643051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	15643051	15643051	C	A	SNP	BTD	ENST00000417015	human	ensembl	58_37c	+1	known	missense	c.140	p.A47E	0.000	NULL	NULL	-	no_errors
CACNA1A	773	genome.wustl.edu	37	19	13356070	13356070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	13356070	13356070	G	A	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.4876	p.R1626C	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA1H	8912	genome.wustl.edu	37	16	1268395	1268395	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	1268395	1268395	C	T	SNP	CACNA1H	NM_021098.2	human	genbank	58_37c	+1	reviewed	silent	c.5631	p.D1877	0.904	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
CDK15	0	genome.wustl.edu	37	2	202744815	202744815	+	Missense_Mutation	SNP	C	C	T	rs145205966	byCluster;byFrequency;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	2	202744815	202744815	C	T	SNP	CDK15	NM_139158.1	human	genbank	58_37c	+1	provisional	missense	c.970	p.R324C	0.758	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CP110	9738	genome.wustl.edu	37	16	19548275	19548275	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	19548275	19548275	A	G	SNP	CP110	NM_014711.4	human	genbank	58_37c	+1	validated	silent	c.1284	p.L428	0.023	NULL	NULL	-	no_errors
CPT1B	1375	genome.wustl.edu	37	22	51009679	51009679	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	51009679	51009679	T	C	SNP	CPT1B	NM_001145135.1	human	genbank	58_37c	-1	reviewed	missense	c.1783	p.R595G	0.984	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
ENSG00000235297	0	genome.wustl.edu	37	18	72057442	72057442	+	Missense_Mutation	SNP	G	G	T	rs62622364	byCluster;byFrequency;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	18	72057442	72057442	G	T	SNP	ENSG00000235297	ENST00000474180	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-72057442	NULL	0.459	-	-	-	no_coding_region:pseudogene
GRIN2A	2903	genome.wustl.edu	37	16	10273954	10273954	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	10273954	10273954	G	C	SNP	GRIN2A	NM_000833.3	human	genbank	58_37c	-1	reviewed	missense	c.315	p.D105E	1.000	superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HAUS7	55559	genome.wustl.edu	37	X	152735959	152735959	+	Silent	SNP	C	C	T	rs2032436	byCluster;byFrequency;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	152735959	152735959	C	T	SNP	HAUS7	NM_017518.6	human	genbank	58_37c	-1	reviewed	silent	c.87	p.E29	0.001	NULL	NULL	-	no_errors
ITGB1BP3	27231	genome.wustl.edu	37	19	3942216	3942216	+	Missense_Mutation	SNP	G	G	A	rs148078582	byFrequency	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	3942216	3942216	G	A	SNP	ITGB1BP3	NM_170678.2	human	genbank	58_37c	+1	validated	missense	c.638	p.R213H	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIAA0240	23506	genome.wustl.edu	37	6	42832565	42832565	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	42832565	42832565	A	C	SNP	KIAA0240	NM_015349.1	human	genbank	58_37c	+1	validated	missense	c.2621	p.N874T	0.975	NULL	NULL	-	no_errors
KIR2DL3	3804	genome.wustl.edu	37	19	55263898	55263898	+	Missense_Mutation	SNP	G	G	A	rs78177475	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	55263898	55263898	G	A	SNP	KIR2DL3	NM_015868.2	human	genbank	58_37c	+1	reviewed	missense	c.953	p.R318H	0.000	NULL	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KIR3DL3	115653	genome.wustl.edu	37	19	55247306	55247306	+	Silent	SNP	A	A	G	rs78728155	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	55247306	55247306	A	G	SNP	KIR3DL3	NM_153443.3	human	genbank	58_37c	+1	reviewed	silent	c.1074	p.Q358	0.020	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KLHL14	57565	genome.wustl.edu	37	18	30349869	30349869	+	Missense_Mutation	SNP	G	G	C	rs142480775	byFrequency	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	18	30349869	30349869	G	C	SNP	KLHL14	NM_020805.1	human	genbank	58_37c	-1	provisional	missense	c.686	p.P229R	1.000	HMMPfam_BACK	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LOC100287161	0	genome.wustl.edu	37	22	24656759	24656759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	22	24656759	24656759	G	A	SNP	LOC100287161	XM_002343792.1	human	genbank	58_37c	-1	model	missense	c.332	p.P111L	1.000	HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
LOC100287226	0	genome.wustl.edu	37	19	22498943	22498943	+	Silent	SNP	T	T	C	rs8104705	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	22498943	22498943	T	C	SNP	LOC100287226	XM_002343636.1	human	genbank	58_37c	+1	model	silent	c.2325	p.C775	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100289192	0	genome.wustl.edu	37	2	242438383	242438383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	2	242438383	242438383	C	T	SNP	LOC100289192	XM_002342316.1	human	genbank	58_37c	+1	model	missense	c.1405	p.R469W	0.000	NULL	NULL	-	no_errors
LPHN2	23266	genome.wustl.edu	37	1	82409015	82409015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	1	82409015	82409015	T	C	SNP	LPHN2	NM_012302.2	human	genbank	58_37c	+1	reviewed	missense	c.760	p.S254P	1.000	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LRRC15	131578	genome.wustl.edu	37	3	194080956	194080956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	194080956	194080956	G	A	SNP	LRRC15	NM_001135057.2	human	genbank	58_37c	-1	validated	missense	c.835	p.R279C	0.955	HMMSmart_SM00369,superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
MAGEA3	4102	genome.wustl.edu	37	X	151936112	151936112	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	151936112	151936112	G	A	SNP	MAGEA3	NM_005362.3	human	genbank	58_37c	-1	reviewed	nonsense	c.55	p.R19*	0.001	NULL	HMMPfam_MAGE	-	no_errors
MTRF1L	54516	genome.wustl.edu	37	6	153315705	153315705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	6	153315705	153315705	C	G	SNP	MTRF1L	NM_019041.5	human	genbank	58_37c	-1	validated	missense	c.630	p.K210N	1.000	superfamily_Release factor (Pfam 00472)	HMMPfam_RF-1,PatternScan_RF_PROK_I,HMMPfam_PCRF,superfamily_Release factor (Pfam 00472)	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9069332	9069332	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	9069332	9069332	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.18114	p.H6038	0.003	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO7A	4647	genome.wustl.edu	37	11	76893500	76893500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	76893500	76893500	G	A	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.R1047H	0.976	HMMSmart_SM00139	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_FERM_N,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAALADL2	254827	genome.wustl.edu	37	3	174974237	174974237	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	174974237	174974237	A	T	SNP	NAALADL2	NM_207015.2	human	genbank	58_37c	+1	validated	missense	c.857	p.D286V	0.997	superfamily_Transferrin receptor ectodomain apical domain	superfamily_Transferrin receptor ectodomain C-terminal domain,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	-	no_errors
NPAS4	266743	genome.wustl.edu	37	11	66188712	66188712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	66188712	66188712	G	A	SNP	NPAS4	NM_178864.3	human	genbank	58_37c	+1	validated	missense	c.62	p.R21Q	1.000	NULL	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91133194	91133194	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	X	91133194	91133194	C	A	SNP	PCDH11X	NM_032968.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1955	p.S652*	0.951	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PDE3A	5139	genome.wustl.edu	37	12	20522503	20522503	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	20522503	20522503	G	A	SNP	PDE3A	NM_000921.3	human	genbank	58_37c	+1	validated	silent	c.285	p.A95	1.000	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67589601	67589602	+	In_Frame_Ins	INS	-	-	GTT	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	5	67589601	67589602	-	GTT	INS	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1364_1365	p.456in_frame_insL	1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PLEKHA1	59338	genome.wustl.edu	37	10	124177438	124177438	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	10	124177438	124177438	A	G	SNP	PLEKHA1	NM_001001974.1	human	genbank	58_37c	+1	validated	missense	c.635	p.Y212C	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
RAD18	56852	genome.wustl.edu	37	3	8983486	8983486	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	8983486	8983486	T	A	SNP	RAD18	NM_020165.3	human	genbank	58_37c	-1	reviewed	missense	c.269	p.N90I	1.000	superfamily_RING/U-box	HMMSmart_SM00184,HMMPfam_SAP,HMMSmart_SM00513,HMMSmart_SM00734,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RASSF2	9770	genome.wustl.edu	37	20	4771137	4771137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	20	4771137	4771137	C	T	SNP	RASSF2	NM_014737.2	human	genbank	58_37c	-1	reviewed	missense	c.497	p.R166H	1.000	NULL	HMMPfam_RA,HMMSmart_RA	-	no_errors
SMARCC2	6601	genome.wustl.edu	37	12	56565650	56565650	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	56565650	56565650	G	A	SNP	SMARCC2	NM_003075.3	human	genbank	58_37c	-1	reviewed	silent	c.1905	p.C635	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00298,HMMSmart_SM00717,superfamily_BRCT domain,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
SNRK	54861	genome.wustl.edu	37	3	43389153	43389153	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	3	43389153	43389153	C	T	SNP	SNRK	NM_001100594.1	human	genbank	58_37c	+1	validated	missense	c.1402	p.R468C	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ST3GAL5	8869	genome.wustl.edu	37	2	86073664	86073664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	2	86073664	86073664	C	T	SNP	ST3GAL5	NM_003896.3	human	genbank	58_37c	-1	reviewed	missense	c.685	p.G229R	0.998	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
TAS2R43	259289	genome.wustl.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C	rs71443637	byCluster;by1000genomes	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	12	11244194	11244194	T	C	SNP	TAS2R43	NM_176884.2	human	genbank	58_37c	-1	provisional	missense	c.635	p.H212R	0.000	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
TRIM53	642569	genome.wustl.edu	37	11	89732527	89732527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	11	89732527	89732527	G	A	SNP	TRIM53	ENST00000417597	human	ensembl	58_37c	-1	known	missense	c.379	p.R127C	0.036	HMMPfam_zf-B_box,HMMSmart_BBOX	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
USP29	57663	genome.wustl.edu	37	19	57640371	57640371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	57640371	57640371	C	T	SNP	USP29	NM_020903.2	human	genbank	58_37c	+1	validated	missense	c.328	p.P110S	0.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VPS18	57617	genome.wustl.edu	37	15	41194898	41194898	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	15	41194898	41194898	C	G	SNP	VPS18	NM_020857.2	human	genbank	58_37c	+1	reviewed	missense	c.2281	p.R761G	1.000	NULL	HMMPfam_Pep3_Vps18,superfamily_ARM repeat	-	no_errors
ZNF333	84449	genome.wustl.edu	37	19	14830057	14830057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	19	14830057	14830057	C	T	SNP	ZNF333	NM_032433.2	human	genbank	58_37c	+1	validated	missense	c.1918	p.H640Y	0.660	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF668	79759	genome.wustl.edu	37	16	31075619	31075619	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14S-01A-11D-A12B-09	TCGA-E2-A14S-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78f39325-e1d0-4181-87f4-cb7f00e886d7	5cfbabf6-5143-4dae-a386-25a208ba147f	16	31075619	31075619	G	A	SNP	ZNF668	NM_024706.4	human	genbank	58_37c	-1	validated	silent	c.162	p.A54	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
