Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATP2B1	490	genome.wustl.edu	37	12	90018057	90018057	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	12	90018057	90018057	A	C	SNP	ATP2B1	NM_001682.2	human	genbank	58_37c	-1	reviewed	missense	c.1247	p.F416C	1.000	HMMPfam_E1-E2_ATPase,superfamily_SSF81665	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
CDH11	1009	genome.wustl.edu	37	16	65016151	65016151	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	16	65016151	65016151	G	A	SNP	CDH11	NM_001797.2	human	genbank	58_37c	-1	reviewed	silent	c.1053	p.N351	0.962	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CHI3L1	1116	genome.wustl.edu	37	1	203154335	203154335	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	1	203154335	203154335	G	C	SNP	CHI3L1	NM_001276.2	human	genbank	58_37c	-1	reviewed	silent	c.234	p.G78	0.016	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
ENSG00000247963	0	genome.wustl.edu	37	5	40775675	40775675	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	5	40775675	40775675	A	C	SNP	PRKAA1	NM_206907.3	human	genbank	58_37c	-1	reviewed	intronic	c.270-70	e3-70	0.091	-	-	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92533820	92533820	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	11	92533820	92533820	C	G	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.7641	p.D2547E	0.576	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
GRK4	2868	genome.wustl.edu	37	4	2986263	2986263	+	Missense_Mutation	SNP	C	C	T	rs146194528	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	4	2986263	2986263	C	T	SNP	GRK4	NM_182982.2	human	genbank	58_37c	+1	reviewed	missense	c.76	p.R26C	1.000	NULL	HMMPfam_RGS,HMMSmart_SM00315,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_Regulator of G-protein signaling RGS,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HLF	3131	genome.wustl.edu	37	17	53345424	53345424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	17	53345424	53345424	G	A	SNP	HLF	NM_002126.4	human	genbank	58_37c	+1	reviewed	missense	c.428	p.C143Y	1.000	NULL	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors
NEDD4	4734	genome.wustl.edu	37	15	56141078	56141078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	15	56141078	56141078	G	A	SNP	NEDD4	NM_198400.2	human	genbank	58_37c	-1	validated	missense	c.2395	p.P799S	1.000	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP	-	no_errors
NTRK3	4916	genome.wustl.edu	37	15	88476388	88476388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	15	88476388	88476388	G	A	SNP	NTRK3	NM_001012338.1	human	genbank	58_37c	-1	reviewed	missense	c.1744	p.R582W	0.988	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
PHIP	55023	genome.wustl.edu	37	6	79665349	79665351	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	6	79665349	79665351	TTC	-	DEL	PHIP	NM_017934.5	human	genbank	58_37c	-1	validated	in_frame_del	c.3833_3831	p.K1278in_frame_del	1.000:1.000:1.000	superfamily_Bromodomain	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
PNLIP	5406	genome.wustl.edu	37	10	118318677	118318677	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	10	118318677	118318677	C	T	SNP	PNLIP	NM_000936.2	human	genbank	58_37c	+1	reviewed	silent	c.942	p.F314	1.000	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_PLAT,HMMSmart_SM00308,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	-	no_errors
PTPN13	5783	genome.wustl.edu	37	4	87728895	87728895	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	4	87728895	87728895	C	G	SNP	PTPN13	NM_080685.2	human	genbank	58_37c	+1	reviewed	missense	c.6943	p.Q2315E	1.000	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_KIND,HMMPfam_FERM_N,HMMPfam_FERM_C,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF101690,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
SLAMF9	89886	genome.wustl.edu	37	1	159923409	159923409	+	Silent	SNP	G	G	A	rs140245593	byCluster;byFrequency;by1000genomes	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	1	159923409	159923409	G	A	SNP	SLAMF9	NM_033438.3	human	genbank	58_37c	-1	reviewed	silent	c.81	p.S27	0.012	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
SRRM1	10250	genome.wustl.edu	37	1	24996733	24996733	+	Missense_Mutation	SNP	C	C	T	rs150723178	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	1	24996733	24996733	C	T	SNP	SRRM1	NM_005839.3	human	genbank	58_37c	+1	validated	missense	c.2327	p.P776L	0.997	NULL	HMMPfam_PWI,HMMSmart_SM00311,superfamily_PWI domain	-	no_errors
TRIP12	9320	genome.wustl.edu	37	2	230643194	230643194	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	2	230643194	230643194	G	A	SNP	TRIP12	NM_004238.1	human	genbank	58_37c	-1	provisional	silent	c.5094	p.R1698	0.997	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold	-	no_errors
ZCCHC12	170261	genome.wustl.edu	37	X	117959237	117959237	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	X	117959237	117959237	C	G	SNP	ZCCHC12	NM_173798.2	human	genbank	58_37c	+1	provisional	missense	c.30	p.N10K	0.081	NULL	NULL	-	no_errors
