Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA8	0	genome.wustl.edu	37	17	66928618	66928618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	66928618	66928618	G	A	SNP	ABCA8	NM_007168.2	human	genbank	58_37c	-1	reviewed	missense	c.608	p.S203L	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
APLF	0	genome.wustl.edu	37	2	68740758	68740758	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	68740758	68740758	A	T	SNP	APLF	NM_173545.2	human	genbank	58_37c	+1	validated	missense	c.568	p.M190L	1.000	NULL	superfamily_SMAD_FHA,HMMPfam_zf-CCHH	-	no_errors
ATP2A1	0	genome.wustl.edu	37	16	28913342	28913342	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	28913342	28913342	C	G	SNP	ATP2A1	NM_173201.2	human	genbank	58_37c	+1	reviewed	missense	c.2259	p.I753M	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
C2CD3	0	genome.wustl.edu	37	11	73872571	73872571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	73872571	73872571	G	T	SNP	C2CD3	NM_015531.4	human	genbank	58_37c	-1	validated	missense	c.356	p.T119N	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
C6orf204	0	genome.wustl.edu	37	6	118886718	118886718	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	118886718	118886718	G	T	SNP	C6orf204	NM_001042475.2	human	genbank	58_37c	-1	validated	silent	c.994	p.R332	0.371	NULL	NULL	-	no_errors
C9orf61	0	genome.wustl.edu	37	9	72002911	72002912	+	In_Frame_Ins	INS	-	-	GTTATA	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	72002911	72002912	-	GTTATA	INS	C9orf61	ENST00000377216	human	ensembl	58_37c	+1	known	in_frame_ins	c.55_56	p.20in_frame_insYS	0.000:0.000	NULL	NULL	-	no_errors
CACNA1A	0	genome.wustl.edu	37	19	13368334	13368334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	13368334	13368334	C	T	SNP	CACNA1A	NM_001127222.1	human	genbank	58_37c	-1	reviewed	missense	c.4420	p.E1474K	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCDC141	0	genome.wustl.edu	37	2	179718227	179718227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	179718227	179718227	G	A	SNP	CCDC141	NM_173648.2	human	genbank	58_37c	-1	provisional	missense	c.1460	p.S487L	0.956	NULL	NULL	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56591278	56591279	+	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	56591278	56591279	-	GGGGTAAGCA	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.8_9	p.D5fs	1.000:1.000	NULL	NULL	-	no_errors
CCDC8	0	genome.wustl.edu	37	19	46914499	46914499	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	46914499	46914499	G	A	SNP	CCDC8	NM_032040.3	human	genbank	58_37c	-1	validated	silent	c.1569	p.A523	0.007	NULL	NULL	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68855977	68856002	+	Frame_Shift_Del	DEL	AGAACCTCGAACTATATTCTTCTGTG	AGAACCTCGAACTATATTCTTCTGTG	-	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	AGAACCTCGAACTATATTCTTCTGTG	AGAACCTCGAACTATATTCTTCTGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	68855977	68856002	AGAACCTCGAACTATATTCTTCTGTG	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1785_1810	p.P597fs	0.995:1.000:0.996:0.306:0.682:0.715:0.592:0.886:0.834:0.000:0.000:0.000:0.000:0.000:0.015:0.001:0.000:0.001:0.000:0.327:0.997:0.999:1.000:1.000:0.955:0.867	superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68856011	68856011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	68856011	68856011	C	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	missense	c.1819	p.P607S	0.914	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDH23	0	genome.wustl.edu	37	10	73326553	73326553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	73326553	73326553	G	A	SNP	CDH23	NM_022124.5	human	genbank	58_37c	+1	reviewed	missense	c.484	p.G162R	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DDX4	0	genome.wustl.edu	37	5	55042014	55042014	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	5	55042014	55042014	G	C	SNP	DDX4	NM_024415.2	human	genbank	58_37c	+1	validated	missense	c.92	p.G31A	1.000	NULL	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DMXL2	0	genome.wustl.edu	37	15	51742471	51742471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	15	51742471	51742471	C	T	SNP	DMXL2	NM_015263.3	human	genbank	58_37c	-1	validated	missense	c.8756	p.G2919D	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DOPEY1	0	genome.wustl.edu	37	6	83869520	83869520	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	83869520	83869520	C	A	SNP	DOPEY1	NM_015018.2	human	genbank	58_37c	+1	validated	nonsense	c.6803	p.S2268*	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
ENSG00000205152	0	genome.wustl.edu	37	16	70268080	70268080	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	70268080	70268080	T	C	SNP	ENSG00000205152	ENST00000378955	human	ensembl	58_37c	-1	known	missense	c.409	p.N137D	1.000	NULL	NULL	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2011	2011	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	MT	2011	2011	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
FANCB	0	genome.wustl.edu	37	X	14871186	14871186	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	14871186	14871186	T	A	SNP	FANCB	NM_001018113.1	human	genbank	58_37c	-1	reviewed	missense	c.1301	p.D434V	0.000	NULL	NULL	-	no_errors
GALNT8	0	genome.wustl.edu	37	12	4855388	4855388	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	4855388	4855388	C	T	SNP	GALNT8	NM_017417.1	human	genbank	58_37c	+1	reviewed	silent	c.1137	p.L379	0.926	superfamily_SSF53448	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,superfamily_SSF53448	-	no_errors
GAS6	0	genome.wustl.edu	37	13	114531617	114531617	+	Missense_Mutation	SNP	G	G	A	rs146140804	byFrequency	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	13	114531617	114531617	G	A	SNP	GAS6	NM_000820.2	human	genbank	58_37c	-1	reviewed	missense	c.1211	p.A404V	0.998	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	PatternScan_ASX_HYDROXYL,HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA,HMMSmart_LamG,HMMSmart_EGF_CA,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
GJB5	0	genome.wustl.edu	37	1	35223650	35223650	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	35223650	35223650	A	C	SNP	GJB5	NM_005268.2	human	genbank	58_37c	+1	provisional	missense	c.719	p.Q240P	0.057	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
GLE1	0	genome.wustl.edu	37	9	131287520	131287520	+	Missense_Mutation	SNP	G	G	A	rs147943229	byFrequency	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	131287520	131287520	G	A	SNP	GLE1	NM_001003722.1	human	genbank	58_37c	+1	reviewed	missense	c.947	p.R316Q	1.000	NULL	HMMPfam_GLE1	-	no_errors
HSPD1	0	genome.wustl.edu	37	2	198363536	198363537	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	198363536	198363537	-	T	INS	HSPD1	NM_002156.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.37_36	p.P12fs	1.000:1.000	NULL	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
JMJD1C	0	genome.wustl.edu	37	10	64968401	64968401	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	64968401	64968401	C	T	SNP	JMJD1C	NM_032776.1	human	genbank	58_37c	-1	validated	missense	c.3028	p.E1010K	1.000	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
KCNH1	0	genome.wustl.edu	37	1	211263988	211263988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	211263988	211263988	C	T	SNP	KCNH1	NM_172362.2	human	genbank	58_37c	-1	reviewed	missense	c.355	p.E119K	1.000	HMMSmart_SM00086,superfamily_PYP-like sensor domain (PAS domain)	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KRT1	0	genome.wustl.edu	37	12	53074048	53074048	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	53074048	53074048	G	A	SNP	KRT1	NM_006121.3	human	genbank	58_37c	-1	reviewed	missense	c.85	p.R29C	0.583	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP9-1	0	genome.wustl.edu	37	17	39346593	39346595	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	39346593	39346595	CCT	-	DEL	KRTAP9-1	ENST00000398470	human	ensembl	58_37c	+1	known	in_frame_del	c.455_457	p.TC152in_frame_delS	0.001:0.010:0.140	NULL	HMMPfam_Keratin_B2	-	no_errors
LOC645382	0	genome.wustl.edu	37	1	13414149	13414149	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	13414149	13414149	C	G	SNP	LOC645382	XM_002342051.1	human	genbank	58_37c	+1	model	silent	c.948	p.P316	0.001	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123524	16123524	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	22	16123524	16123524	A	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MPP5	0	genome.wustl.edu	37	14	67790494	67790494	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	14	67790494	67790494	C	G	SNP	MPP5	NM_022474.2	human	genbank	58_37c	+1	validated	missense	c.1816	p.R606G	1.000	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_SH3_2,HMMPfam_L27,HMMPfam_L27_N,PatternScan_GUANYLATE_KINASE_1,superfamily_L27 domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MTSS1	0	genome.wustl.edu	37	8	125711807	125711807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	8	125711807	125711807	G	A	SNP	MTSS1	NM_014751.4	human	genbank	58_37c	-1	validated	silent	c.168	p.D56	0.728	HMMPfam_IMD	HMMPfam_WH2,HMMPfam_IMD	-	no_errors
MYO6	0	genome.wustl.edu	37	6	76623827	76623827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	76623827	76623827	G	A	SNP	MYO6	NM_004999.3	human	genbank	58_37c	+1	reviewed	missense	c.3487	p.E1163K	1.000	NULL	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NETO1	0	genome.wustl.edu	37	18	70417314	70417314	+	Missense_Mutation	SNP	G	G	T	rs144601570	byFrequency	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	18	70417314	70417314	G	T	SNP	NETO1	NM_138966.2	human	genbank	58_37c	-1	reviewed	missense	c.1524	p.H508Q	0.999	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
NFATC3	0	genome.wustl.edu	37	16	68215432	68215432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	16	68215432	68215432	G	A	SNP	NFATC3	NM_173165.1	human	genbank	58_37c	+1	reviewed	missense	c.1970	p.G657E	1.000	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains	HMMPfam_TIG,HMMSmart_SM00429,superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains	-	no_errors
NUP155	0	genome.wustl.edu	37	5	37330153	37330153	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	5	37330153	37330153	G	T	SNP	NUP155	NM_153485.1	human	genbank	58_37c	-1	reviewed	silent	c.1711	p.R571	1.000	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
OR1L8	0	genome.wustl.edu	37	9	125329986	125329986	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	125329986	125329986	G	T	SNP	OR1L8	NM_001004454.1	human	genbank	58_37c	-1	provisional	missense	c.771	p.F257L	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PAK4	0	genome.wustl.edu	37	19	39660228	39660228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	39660228	39660228	C	T	SNP	PAK4	NM_001014831.2	human	genbank	58_37c	+1	reviewed	missense	c.35	p.S12F	0.998	HMMPfam_PBD,HMMSmart_SM00285	HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PLEKHH2	0	genome.wustl.edu	37	2	43992655	43992655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	43992655	43992655	C	A	SNP	PLEKHH2	NM_172069.3	human	genbank	58_37c	+1	validated	missense	c.4400	p.T1467N	0.000	NULL	HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors
PPFIA1	0	genome.wustl.edu	37	11	70171069	70171069	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	70171069	70171069	G	C	SNP	PPFIA1	NM_003626.2	human	genbank	58_37c	+1	reviewed	silent	c.483	p.L161	0.917	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PPP2R1A	0	genome.wustl.edu	37	19	52705251	52705251	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	52705251	52705251	G	C	SNP	PPP2R1A	NM_014225.5	human	genbank	58_37c	+1	reviewed	missense	c.133	p.E45Q	0.998	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
PRICKLE2	0	genome.wustl.edu	37	3	64142855	64142855	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	64142855	64142855	A	G	SNP	PRICKLE2	NM_198859.3	human	genbank	58_37c	-1	validated	missense	c.583	p.C195R	1.000	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_SSF57716	-	no_errors
PSIP1	0	genome.wustl.edu	37	9	15489983	15489983	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	9	15489983	15489983	C	A	SNP	PSIP1	NM_001128217.1	human	genbank	58_37c	-1	validated	splice_site	c.288+1	e3+1	1.000	-	-	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89690810	89690813	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	GAAA	GAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	89690810	89690813	GAAA	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_del	c.217_220	p.E73fs	1.000:1.000:1.000:1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB36	0	genome.wustl.edu	37	22	23498327	23498328	+	In_Frame_Ins	INS	-	-	CTGAGAAAA	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	22	23498327	23498328	-	CTGAGAAAA	INS	RAB36	ENST00000420895	human	ensembl	58_37c	+1	known	in_frame_ins	c.383_384	p.QDP129in_frame_ins*	0.005:0.007	HMMSmart_SM00175	HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RAB36	0	genome.wustl.edu	37	22	23498330	23498331	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	22	23498330	23498331	-	CTG	INS	RAB36	ENST00000420895	human	ensembl	58_37c	+1	known	in_frame_ins	c.386_387	p.QDPL129in_frame_insH*	0.000:0.000	HMMSmart_SM00175	HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RAB36	0	genome.wustl.edu	37	22	23498334	23498335	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	22	23498334	23498335	-	A	INS	RAB36	ENST00000420895	human	ensembl	58_37c	+1	known	frame_shift_ins	c.390_391	p.P130fs	0.001:0.032	NULL	HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RB1	0	genome.wustl.edu	37	13	48954373	48954373	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	13	48954373	48954373	T	C	SNP	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	silent	c.1494	p.Y498	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RNF31	0	genome.wustl.edu	37	14	24619840	24619840	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	14	24619840	24619840	C	G	SNP	RNF31	NM_017999.4	human	genbank	58_37c	+1	validated	missense	c.1231	p.Q411E	0.269	HMMSmart_SM00547,superfamily_NZF domain	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMSmart_SM00647,PatternScan_ZF_RING_1,HMMPfam_PUB,superfamily_RING/U-box,superfamily_Znf265 first zinc-finger domain,superfamily_NZF domain	-	no_errors
RPS6KB2	0	genome.wustl.edu	37	11	67200221	67200221	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	67200221	67200221	G	A	SNP	RPS6KB2	NM_003952.2	human	genbank	58_37c	+1	reviewed	missense	c.529	p.E177K	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33954810	33954810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	15	33954810	33954810	G	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	silent	c.5079	p.T1693	0.223	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SART1	0	genome.wustl.edu	37	11	65746121	65746121	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	11	65746121	65746121	G	T	SNP	SART1	NM_005146.4	human	genbank	58_37c	+1	reviewed	missense	c.2223	p.M741I	1.000	HMMPfam_SART-1	HMMPfam_SART-1	-	no_errors
SELP	0	genome.wustl.edu	37	1	169562905	169562905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	169562905	169562905	G	A	SNP	SELP	NM_003005.3	human	genbank	58_37c	-1	reviewed	missense	c.2345	p.T782M	0.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin	-	no_errors
SH3BP5	0	genome.wustl.edu	37	3	15300446	15300446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	15300446	15300446	G	A	SNP	SH3BP5	NM_004844.3	human	genbank	58_37c	-1	validated	missense	c.781	p.R261W	0.808	HMMPfam_SH3BP5	HMMPfam_SH3BP5	-	no_errors
SLC16A1	0	genome.wustl.edu	37	1	113471850	113471850	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	1	113471850	113471850	G	C	SNP	SLC16A1	NM_003051.3	human	genbank	58_37c	-1	reviewed	missense	c.81	p.F27L	1.000	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC7A3	0	genome.wustl.edu	37	X	70149574	70149574	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	70149574	70149574	G	T	SNP	SLC7A3	NM_001048164.2	human	genbank	58_37c	-1	reviewed	missense	c.274	p.P92T	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SMARCA1	0	genome.wustl.edu	37	X	128650475	128650475	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	X	128650475	128650475	C	G	SNP	SMARCA1	NM_003069.3	human	genbank	58_37c	-1	reviewed	splice_site	c.262-1	e3-1	1.000	-	-	-	no_errors
SPAG9	0	genome.wustl.edu	37	17	49067939	49067939	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	17	49067939	49067939	T	C	SNP	SPAG9	NM_001130528.2	human	genbank	58_37c	-1	reviewed	missense	c.2489	p.N830S	1.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Jnk-SapK_ap_N	-	no_errors
SYTL3	0	genome.wustl.edu	37	6	159184541	159184541	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	6	159184541	159184541	A	C	SNP	SYTL3	NM_001009991.2	human	genbank	58_37c	+1	validated	missense	c.1519	p.K507Q	0.996	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
TAOK3	0	genome.wustl.edu	37	12	118610295	118610295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	12	118610295	118610295	C	T	SNP	TAOK3	NM_016281.3	human	genbank	58_37c	-1	validated	silent	c.1866	p.K622	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
THAP5	0	genome.wustl.edu	37	7	108204886	108204886	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	7	108204886	108204886	A	G	SNP	THAP5	NM_001130475.1	human	genbank	58_37c	-1	validated	missense	c.937	p.Y313H	0.009	NULL	HMMPfam_THAP,HMMSmart_SM00692	-	no_errors
TRAK2	0	genome.wustl.edu	37	2	202245814	202245814	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	202245814	202245814	T	C	SNP	TRAK2	NM_015049.2	human	genbank	58_37c	-1	validated	missense	c.2197	p.T733A	0.000	NULL	HMMPfam_HAP1_N	-	no_errors
TTC14	0	genome.wustl.edu	37	3	180328183	180328183	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	180328183	180328183	C	G	SNP	TTC14	NM_133462.3	human	genbank	58_37c	+1	validated	missense	c.2166	p.I722M	0.007	NULL	HMMPfam_TPR_1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TTN	0	genome.wustl.edu	37	2	179605501	179605501	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	179605501	179605501	C	G	SNP	TTN	ENST00000342175	human	ensembl	58_37c	-1	known	missense	c.11946	p.Q3982H	0.141	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UROC1	0	genome.wustl.edu	37	3	126222869	126222869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	126222869	126222869	C	T	SNP	UROC1	NM_144639.2	human	genbank	58_37c	-1	reviewed	missense	c.871	p.D291N	0.998	HMMPfam_Urocanase,superfamily_Urocanase	HMMPfam_Urocanase,PatternScan_UROCANASE,superfamily_Urocanase	-	no_errors
WDR87	0	genome.wustl.edu	37	19	38382389	38382389	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	38382389	38382389	G	C	SNP	WDR87	NM_031951.3	human	genbank	58_37c	-1	provisional	missense	c.3080	p.S1027C	0.003	superfamily_WD40 repeat-like,superfamily_ARM repeat	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_C_TYPE_LECTIN_1,HMMPfam_WD40	-	no_errors
WDR92	0	genome.wustl.edu	37	2	68371831	68371831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	2	68371831	68371831	C	T	SNP	WDR92	NM_138458.2	human	genbank	58_37c	-1	validated	missense	c.301	p.E101K	0.366	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
YME1L1	0	genome.wustl.edu	37	10	27437888	27437888	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	10	27437888	27437888	A	G	SNP	YME1L1	NM_139312.1	human	genbank	58_37c	-1	reviewed	missense	c.115	p.S39P	0.062	NULL	HMMPfam_Peptidase_M41,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF578	0	genome.wustl.edu	37	19	53014257	53014257	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	19	53014257	53014257	A	T	SNP	ZNF578	NM_001099694.1	human	genbank	58_37c	+1	validated	missense	c.623	p.Y208F	0.493	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF619	0	genome.wustl.edu	37	3	40528668	40528668	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IH-01A-11D-A188-09	TCGA-E2-A1IH-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd886e35-4201-4732-90c6-142d8fe309b1	cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62	3	40528668	40528668	C	T	SNP	ZNF619	NM_001145082.2	human	genbank	58_37c	+1	validated	nonsense	c.787	p.Q263*	0.978	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
