Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTSL3	0	genome.wustl.edu	37	15	84506850	84506850	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	15	84506850	84506850	T	A	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	missense	c.610	p.C204S	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ALMS1P	0	genome.wustl.edu	37	2	73912256	73912256	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	2	73912256	73912256	G	A	SNP	ALMS1P	NR_003683.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
CLEC16A	0	genome.wustl.edu	37	16	11154805	11154805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	11154805	11154805	G	A	SNP	CLEC16A	NM_015226.2	human	genbank	58_37c	+1	validated	missense	c.2042	p.R681Q	1.000	NULL	PatternScan_C_TYPE_LECTIN_1,HMMPfam_FPL	-	no_errors
CMIP	0	genome.wustl.edu	37	16	81737574	81737574	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	81737574	81737574	G	T	SNP	CMIP	NM_198390.2	human	genbank	58_37c	+1	validated	missense	c.1975	p.G659C	0.998	superfamily_RNI-like	PatternScan_WD_REPEATS_1,superfamily_PH domain-like,superfamily_RNI-like	-	no_errors
COLEC11	0	genome.wustl.edu	37	2	3691463	3691463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	2	3691463	3691463	G	A	SNP	COLEC11	NM_024027.3	human	genbank	58_37c	+1	validated	missense	c.571	p.A191T	0.255	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Collagen,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
ENSG00000250924	0	genome.wustl.edu	37	7	38415864	38415865	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	7	38415864	38415865	CA	-	DEL	ENSG00000250924	ENST00000515771	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.008:0.009	-	-	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377119	168377119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	6	168377119	168377119	T	C	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.214	p.M72V	0.765	NULL	NULL	-	no_errors
IGHM	0	genome.wustl.edu	37	14	106322075	106322075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	14	106322075	106322075	G	A	SNP	IGHM	ENST00000390558	human	ensembl	58_37c	-1	known	missense	c.248	p.T83M	0.000	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC442421	0	genome.wustl.edu	37	9	66500810	66500810	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	9	66500810	66500810	G	A	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.950	-	-	-	no_errors
MACF1	0	genome.wustl.edu	37	1	39798985	39798985	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	39798985	39798985	A	G	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	missense	c.2045	p.E682G	0.234	NULL	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
NR2C2	0	genome.wustl.edu	37	3	15094988	15094988	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	15094988	15094988	G	C	SNP	NR2C2	ENST00000439011	human	ensembl	58_37c	+1	known	missense	c.579	p.K193N	0.001	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	-	no_start_codon
NWD1	0	genome.wustl.edu	37	19	16905357	16905357	+	Silent	SNP	C	C	T	rs150732054	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	19	16905357	16905357	C	T	SNP	NWD1	NM_001007525.2	human	genbank	58_37c	+1	validated	silent	c.2892	p.L964	0.876	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PIK3C2G	0	genome.wustl.edu	37	12	18443835	18443835	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	12	18443835	18443835	A	C	SNP	PIK3C2G	NM_004570.4	human	genbank	58_37c	+1	reviewed	missense	c.808	p.K270Q	1.000	superfamily_Ubiquitin-like	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PTP4A2	0	genome.wustl.edu	37	1	32384627	32384627	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	32384627	32384627	T	A	SNP	PTP4A2	NM_080391.2	human	genbank	58_37c	-1	reviewed	missense	c.40	p.M14L	1.000	HMMPfam_Y_phosphatase,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RASGEF1A	0	genome.wustl.edu	37	10	43696327	43696327	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	10	43696327	43696327	T	A	SNP	RASGEF1A	NM_145313.2	human	genbank	58_37c	-1	validated	missense	c.469	p.T157S	1.000	HMMSmart_SM00229,superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	-	no_errors
RPGRIP1L	0	genome.wustl.edu	37	16	53706824	53706824	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	53706824	53706824	T	C	SNP	RPGRIP1L	NM_015272.2	human	genbank	58_37c	-1	reviewed	silent	c.987	p.K329	0.921	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SETD2	0	genome.wustl.edu	37	3	47058736	47058737	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	47058736	47058737	-	T	INS	SETD2	NM_014159.6	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.7542_7541	p.H2514fs	0.914:1.000	HMMPfam_SRI_2	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_Ferritin-like,HMMPfam_SRI_2,PatternScan_ADH_IRON_1,superfamily_SET domain	-	no_errors
SHROOM1	0	genome.wustl.edu	37	5	132159726	132159726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	5	132159726	132159726	C	T	SNP	SHROOM1	NM_133456.2	human	genbank	58_37c	-1	validated	missense	c.1627	p.E543K	0.506	HMMPfam_ASD2	HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC9A1	0	genome.wustl.edu	37	1	27427750	27427750	+	Missense_Mutation	SNP	G	G	T	rs140853773	unknown	TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	27427750	27427750	G	T	SNP	SLC9A1	NM_003047.3	human	genbank	58_37c	-1	validated	missense	c.2054	p.T685K	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
