Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC6	0	genome.wustl.edu	37	16	16284084	16284084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	16284084	16284084	G	A	SNP	ABCC6	NM_001171.5	human	genbank	58_37c	-1	reviewed	silent	c.1572	p.A524	0.998	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCF3	0	genome.wustl.edu	37	3	183905745	183905745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	183905745	183905745	G	C	SNP	ABCF3	NM_018358.2	human	genbank	58_37c	+1	validated	missense	c.543	p.E181D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACVR1B	0	genome.wustl.edu	37	12	52387771	52387771	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	52387771	52387771	A	T	SNP	ACVR1B	NM_004302.3	human	genbank	58_37c	+1	reviewed	silent	c.1395	p.A465	0.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AHI1	0	genome.wustl.edu	37	6	135787286	135787286	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	135787286	135787286	G	A	SNP	AHI1	NM_001134830.1	human	genbank	58_37c	-1	reviewed	nonsense	c.415	p.Q139*	0.006	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
AKAP13	0	genome.wustl.edu	37	15	86284649	86284649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	15	86284649	86284649	C	T	SNP	AKAP13	NM_006738.4	human	genbank	58_37c	+1	reviewed	missense	c.7993	p.L2665F	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
AKAP8	0	genome.wustl.edu	37	19	15469801	15469801	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	15469801	15469801	T	G	SNP	AKAP8	NM_005858.2	human	genbank	58_37c	-1	reviewed	missense	c.1600	p.K534Q	1.000	HMMPfam_AKAP95	HMMPfam_AKAP95,HMMSmart_ZnF_C2H2,HMMPfam_RII_binding_1,superfamily_SSF56935	-	no_errors
AKD1	0	genome.wustl.edu	37	6	109850199	109850201	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	109850199	109850201	AAC	-	DEL	AKD1	ENST00000355283	human	ensembl	58_37c	-1	known	in_frame_del	c.885_883	p.V295in_frame_del	0.003:0.000:0.000	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANXA13	0	genome.wustl.edu	37	8	124724944	124724944	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	8	124724944	124724944	T	G	SNP	ANXA13	NM_001003954.1	human	genbank	58_37c	-1	reviewed	missense	c.188	p.K63T	0.935	superfamily_Annexin,HMMPfam_Annexin	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335	-	no_errors
ATF7	0	genome.wustl.edu	37	12	53946409	53946409	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	53946409	53946409	C	G	SNP	ATF7	NM_001130059.1	human	genbank	58_37c	-1	validated	missense	c.61	p.E21Q	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_bZIP_1,HMMSmart_SM00355,PatternScan_ATPASE_ALPHA_BETA,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BRPF1	0	genome.wustl.edu	37	3	9781344	9781344	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	9781344	9781344	A	G	SNP	BRPF1	NM_001003694.1	human	genbank	58_37c	+1	reviewed	missense	c.1261	p.M421V	1.000	HMMSmart_PHD	HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_ZnF_C2H2,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF63748	-	no_errors
C14orf102	0	genome.wustl.edu	37	14	90782992	90782992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	14	90782992	90782992	C	T	SNP	C14orf102	NM_017970.2	human	genbank	58_37c	-1	validated	missense	c.337	p.D113N	0.016	NULL	HMMPfam_DUF1740,superfamily_Prenyl_trans	-	no_errors
C1orf173	0	genome.wustl.edu	37	1	75038741	75038741	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	75038741	75038741	C	G	SNP	C1orf173	NM_001002912.4	human	genbank	58_37c	-1	validated	missense	c.2653	p.V885L	0.018	NULL	NULL	-	no_errors
C4orf26	0	genome.wustl.edu	37	4	76489622	76489622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	76489622	76489622	G	A	SNP	C4orf26	ENST00000435974	human	ensembl	58_37c	+1	known	missense	c.410	p.R137K	0.008	NULL	NULL	-	no_errors
CLCA4	0	genome.wustl.edu	37	1	87045132	87045132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	87045132	87045132	G	T	SNP	CLCA4	NM_012128.3	human	genbank	58_37c	+1	reviewed	missense	c.2218	p.V740L	0.914	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_CLCA_N,HMMPfam_DUF1973,superfamily_SSF53300	-	no_errors
CRYBG3	0	genome.wustl.edu	37	3	97599998	97599998	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	97599998	97599998	A	G	SNP	CRYBG3	NM_153605.2	human	genbank	58_37c	+1	validated	missense	c.1243	p.I415V	0.938	HMMSmart_SM00247,superfamily_gamma-Crystallin-like	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Crystall,HMMSmart_SM00247,superfamily_Ricin B-like lectins,superfamily_gamma-Crystallin-like	-	no_errors
CSAD	0	genome.wustl.edu	37	12	53565185	53565188	+	Frame_Shift_Del	DEL	GCGG	GCGG	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	GCGG	GCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	53565185	53565188	GCGG	-	DEL	CSAD	NM_015989.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.573_570	p.R191fs	0.999:1.000:1.000:1.000	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases	-	no_errors
CYP2B6	0	genome.wustl.edu	37	19	41515230	41515230	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	41515230	41515230	A	T	SNP	CYP2B6	NM_000767.4	human	genbank	58_37c	+1	reviewed	missense	c.752	p.K251M	0.999	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DDX47	0	genome.wustl.edu	37	12	12974614	12974614	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	12974614	12974614	A	C	SNP	DDX47	NM_016355.3	human	genbank	58_37c	+1	reviewed	silent	c.396	p.S132	0.106	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DIDO1	0	genome.wustl.edu	37	20	61542888	61542888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	20	61542888	61542888	G	A	SNP	DIDO1	NM_033081.1	human	genbank	58_37c	-1	reviewed	missense	c.77	p.T26I	1.000	NULL	HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
DNAJB8	0	genome.wustl.edu	37	3	128181838	128181838	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	128181838	128181838	T	A	SNP	DNAJB8	NM_153330.2	human	genbank	58_37c	-1	validated	missense	c.251	p.H84L	0.036	superfamily_Chaperone J-domain	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1	-	no_errors
E4F1	0	genome.wustl.edu	37	16	2284337	2284337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	2284337	2284337	C	T	SNP	E4F1	NM_004424.3	human	genbank	58_37c	+1	reviewed	missense	c.1541	p.S514L	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
EMP1	0	genome.wustl.edu	37	12	13366467	13366467	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	13366467	13366467	A	G	SNP	EMP1	NM_001423.2	human	genbank	58_37c	+1	validated	missense	c.133	p.T45A	0.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_PMP22_1,PatternScan_PMP22_2	-	no_errors
ENSG00000200544	0	genome.wustl.edu	37	9	33352826	33352827	+	RNA	INS	-	-	AAA	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	33352826	33352827	-	AAA	INS	ENSG00000200544	ENST00000363674	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.022:0.005	-	-	-	no_errors
ENSG00000213926	0	genome.wustl.edu	37	19	39745695	39745696	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	39745695	39745696	-	C	INS	ENSG00000213926	ENST00000396851	human	ensembl	58_37c	-1	known	frame_shift_ins	c.213_212	p.C71fs	0.971:1.000	HMMPfam_SelR,superfamily_Mss4-like	HMMPfam_SelR,superfamily_Mss4-like	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16949355	16949355	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	16949355	16949355	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.042	-	-	-	no_errors
EPPK1	0	genome.wustl.edu	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	8	144940290	144940290	C	G	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	missense	c.7132	p.D2378H	0.999	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
GPC5	0	genome.wustl.edu	37	13	92346012	92346012	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	13	92346012	92346012	G	C	SNP	GPC5	NM_004466.4	human	genbank	58_37c	+1	reviewed	missense	c.897	p.L299F	1.000	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
HNRNPA0	0	genome.wustl.edu	37	5	137088945	137088946	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	5	137088945	137088946	-	GCT	INS	HNRNPA0	NM_006805.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.811_810	p.270in_frame_insS	0.923:0.963	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
HOXC10	0	genome.wustl.edu	37	12	54379358	54379358	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	54379358	54379358	C	G	SNP	HOXC10	NM_017409.3	human	genbank	58_37c	+1	reviewed	silent	c.315	p.V105	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
HSPA14	0	genome.wustl.edu	37	10	14909121	14909121	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	10	14909121	14909121	C	G	SNP	HSPA14	NM_016299.2	human	genbank	58_37c	+1	validated	missense	c.1033	p.Q345E	1.000	HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Actin-like ATPase domain	HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Actin-like ATPase domain	-	no_errors
HYDIN	0	genome.wustl.edu	37	16	70926361	70926361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	70926361	70926361	C	A	SNP	HYDIN	NM_032821.2	human	genbank	58_37c	-1	validated	missense	c.9317	p.G3106V	0.999	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KCNA1	0	genome.wustl.edu	37	12	5021319	5021319	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	5021319	5021319	A	G	SNP	KCNA1	NM_000217.2	human	genbank	58_37c	+1	reviewed	missense	c.775	p.I259V	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KRT75	0	genome.wustl.edu	37	12	52825420	52825420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	52825420	52825420	G	A	SNP	KRT75	NM_004693.2	human	genbank	58_37c	-1	reviewed	silent	c.777	p.D259	0.670	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP17-1	0	genome.wustl.edu	37	17	39471753	39471767	+	In_Frame_Del	DEL	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	39471753	39471767	GCCCCCGCAGCCAGA	-	DEL	KRTAP17-1	NM_031964.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.150_136	p.GCGGS47in_frame_del	0.000:0.002:0.001:0.000:0.137:0.140:0.140:0.265:0.265:0.248:0.247:0.130:0.000:0.000:0.001	NULL	NULL	-	no_errors
LILRA6	0	genome.wustl.edu	37	19	54743824	54743824	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	54743824	54743824	T	G	SNP	LILRA6	NM_024318.2	human	genbank	58_37c	-1	validated	missense	c.1262	p.H421P	0.000	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454742	66454742	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	66454742	66454742	G	A	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	silent	c.213	p.L71	0.021	NULL	NULL	-	no_errors
LOC100289581	0	genome.wustl.edu	37	10	135491011	135491011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	10	135491011	135491011	G	A	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	missense	c.622	p.A208T	0.045	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
LPHN3	0	genome.wustl.edu	37	4	62542579	62542579	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	62542579	62542579	G	T	SNP	LPHN3	NM_015236.4	human	genbank	58_37c	+1	reviewed	missense	c.305	p.G102V	1.000	HMMPfam_Gal_Lectin	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MFSD6	0	genome.wustl.edu	37	2	191362340	191362340	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	191362340	191362340	A	C	SNP	MFSD6	ENST00000434582	human	ensembl	58_37c	+1	known	missense	c.673	p.S225R	0.971	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MFSD7	0	genome.wustl.edu	37	4	678308	678308	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	4	678308	678308	G	A	SNP	MFSD7	NM_032219.2	human	genbank	58_37c	-1	provisional	silent	c.804	p.L268	0.998	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
MICAL1	0	genome.wustl.edu	37	6	109767631	109767632	+	Frame_Shift_Ins	INS	-	-	GTGGTCTGGTCAGTGACCTGCCCAGG	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	109767631	109767632	-	GTGGTCTGGTCAGTGACCTGCCCAGG	INS	MICAL1	ENST00000335266	human	ensembl	58_37c	-1	known	frame_shift_ins	c.58_57	p.W19fs	0.003:0.001	NULL	NULL	-	no_errors
MORC1	0	genome.wustl.edu	37	3	108723692	108723692	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	108723692	108723692	G	T	SNP	MORC1	NM_014429.3	human	genbank	58_37c	-1	reviewed	missense	c.2057	p.P686Q	0.001	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_zf-CW	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	11	1093393	1093393	G	A	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.5212	p.G1738S	0.082	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195515008	195515008	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	195515008	195515008	C	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.3443	p.G1148A	0.038	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUM1	0	genome.wustl.edu	37	19	1370741	1370741	+	Silent	SNP	G	A	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	1370741	1370741	G	A	SNP	MUM1	NM_032853.3	human	genbank	58_37c	+1	validated	silent	c.1653	p.L551	0.000	NULL	superfamily_Tudor/PWWP/MBT	-	no_errors
MYH11	0	genome.wustl.edu	37	16	15878554	15878554	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	15878554	15878554	C	T	SNP	MYH11	NM_001040114.1	human	genbank	58_37c	-1	reviewed	splice_site	c.654+1	e5+1	1.000	-	-	-	no_errors
MYT1L	0	genome.wustl.edu	37	2	1805469	1805469	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	1805469	1805469	T	A	SNP	MYT1L	NM_015025.2	human	genbank	58_37c	-1	validated	missense	c.3269	p.Q1090L	1.000	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1,superfamily_SSF103637	-	no_errors
NCKAP1	0	genome.wustl.edu	37	2	183800077	183800077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	183800077	183800077	T	C	SNP	NCKAP1	NM_205842.1	human	genbank	58_37c	-1	validated	missense	c.2740	p.T914A	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCOR1	0	genome.wustl.edu	37	17	15973571	15973593	+	Frame_Shift_Del	DEL	CCAGGGCTCAGTTGTGCTTTGGG	CCAGGGCTCAGTTGTGCTTTGGG	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	CCAGGGCTCAGTTGTGCTTTGGG	CCAGGGCTCAGTTGTGCTTTGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	15973571	15973593	CCAGGGCTCAGTTGTGCTTTGGG	-	DEL	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.4421_4399	p.P1467fs	1.000:0.989:0.035:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.979:1.000:1.000:0.972:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
OR2T2	0	genome.wustl.edu	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	TGCTGCG	TGCTGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	248616705	248616711	TGCTGCG	-	DEL	OR2T2	NM_001004136.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.607_613	p.C204fs	0.000:0.001:0.000:0.000:0.000:0.000:0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OVCH1	0	genome.wustl.edu	37	12	29629199	29629199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	29629199	29629199	G	A	SNP	OVCH1	NM_183378.2	human	genbank	58_37c	-1	validated	missense	c.1411	p.P471S	0.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PAPPA	0	genome.wustl.edu	37	9	118997528	118997528	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	118997528	118997528	T	C	SNP	PAPPA	NM_002581.3	human	genbank	58_37c	+1	reviewed	missense	c.2344	p.Y782H	1.000	HMMPfam_Peptidase_M43,superfamily_SSF55486	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486	-	no_errors
PCDHB7	0	genome.wustl.edu	37	5	140553041	140553041	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	5	140553041	140553041	A	G	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.625	p.S209G	0.108	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHB7	0	genome.wustl.edu	37	5	140554394	140554394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	5	140554394	140554394	G	A	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.1978	p.V660M	0.649	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIP4K2C	0	genome.wustl.edu	37	12	57994636	57994656	+	In_Frame_Del	DEL	GGCATCCACGACATCATTCGG	GGCATCCACGACATCATTCGG	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	GGCATCCACGACATCATTCGG	GGCATCCACGACATCATTCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	57994636	57994656	GGCATCCACGACATCATTCGG	-	DEL	PIP4K2C	NM_024779.4	human	genbank	58_37c	+1	validated	in_frame_del	c.856_876	p.IHDIIRG287in_frame_del	1.000:1.000:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.966:0.959:0.994:0.993:0.997:0.999:0.998	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104	-	no_errors
PRB2	0	genome.wustl.edu	37	12	11546260	11546260	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	11546260	11546260	T	G	SNP	PRB2	NM_006248.3	human	genbank	58_37c	-1	validated	missense	c.752	p.N251T	0.001	NULL	NULL	-	no_errors
PTPRB	0	genome.wustl.edu	37	12	71002944	71002944	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	12	71002944	71002944	G	C	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	missense	c.884	p.T295R	0.998	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RBM5	0	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	3	50155888	50155889	GA	-	DEL	RBM5	NM_005778.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.2447_2448	p.*816fs	1.000:0.999	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD	-	no_errors
RPL13A	0	genome.wustl.edu	37	19	49993772	49993772	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	49993772	49993772	C	A	SNP	RPL13A	NM_012423.2	human	genbank	58_37c	+1	reviewed	missense	c.195	p.N65K	1.000	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13	HMMPfam_Ribosomal_L13,PatternScan_RIBOSOMAL_L13,superfamily_Ribosomal_L13	-	no_errors
RRN3	0	genome.wustl.edu	37	16	15165061	15165061	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	16	15165061	15165061	G	T	SNP	RRN3	NM_018427.3	human	genbank	58_37c	-1	validated	missense	c.1176	p.D392E	1.000	HMMPfam_RRN3	HMMPfam_RRN3	-	no_errors
RSPH10B	0	genome.wustl.edu	37	7	6005323	6005323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	7	6005323	6005323	C	T	SNP	RSPH10B	NM_173565.3	human	genbank	58_37c	-1	validated	missense	c.275	p.R92H	0.005	HMMPfam_MORN,superfamily_SSF82185	HMMPfam_MORN,HMMSmart_MORN,superfamily_SSF82185	-	no_errors
RUSC2	0	genome.wustl.edu	37	9	35558483	35558483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	35558483	35558483	G	T	SNP	RUSC2	NM_001135999.1	human	genbank	58_37c	+1	validated	missense	c.3260	p.G1087V	1.000	HMMPfam_RUN	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_RUN,HMMSmart_SM00593,HMMPfam_SH3_2	-	no_errors
RXRG	0	genome.wustl.edu	37	1	165398021	165398021	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	165398021	165398021	C	G	SNP	RXRG	NM_006917.3	human	genbank	58_37c	-1	reviewed	missense	c.232	p.G78R	1.000	NULL	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
RYR1	0	genome.wustl.edu	37	19	38939431	38939431	+	Missense_Mutation	SNP	G	G	A	rs113332073	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	38939431	38939431	G	A	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	missense	c.1100	p.R367Q	1.000	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCYL3	0	genome.wustl.edu	37	1	169857904	169857904	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	169857904	169857904	A	C	SNP	SCYL3	NM_181093.2	human	genbank	58_37c	-1	validated	silent	c.78	p.V26	0.576	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_HEAT,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat	-	no_errors
SEMA4D	0	genome.wustl.edu	37	9	91978680	91978680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	9	91978680	91978680	C	T	SNP	SEMA4D	NM_001142287.1	human	genbank	58_37c	-1	validated	missense	c.2068	p.V690M	0.013	superfamily_Immunoglobulin	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_Immunoglobulin	-	no_errors
SGK1	0	genome.wustl.edu	37	6	134494418	134494418	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	6	134494418	134494418	C	G	SNP	SGK1	NM_001143676.1	human	genbank	58_37c	-1	reviewed	missense	c.696	p.K232N	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SLC4A1	0	genome.wustl.edu	37	17	42335404	42335404	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	42335404	42335404	A	G	SNP	SLC4A1	NM_000342.3	human	genbank	58_37c	-1	reviewed	missense	c.1232	p.F411S	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
SPOCD1	0	genome.wustl.edu	37	1	32279574	32279574	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	1	32279574	32279574	C	A	SNP	SPOCD1	NM_144569.4	human	genbank	58_37c	-1	provisional	missense	c.1361	p.S454I	0.053	NULL	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510	-	no_errors
TANC1	0	genome.wustl.edu	37	2	160019974	160019974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	2	160019974	160019974	C	T	SNP	TANC1	NM_033394.2	human	genbank	58_37c	+1	validated	missense	c.863	p.A288V	0.889	NULL	HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TFDP3	0	genome.wustl.edu	37	X	132351078	132351079	+	Missense_Mutation	DNP	CC	CC	AA	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	132351078	132351079	CC	AA	DNP	TFDP3	NM_016521.2	human	genbank	58_37c	-1	reviewed	missense	c.1210_1209	p.ED403DY	1.000:1.000	NULL	HMMPfam_E2F_TDP,HMMPfam_DP,superfamily_SSF46785	-	no_errors
TLR7	0	genome.wustl.edu	37	X	12903898	12903898	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	12903898	12903898	C	A	SNP	TLR7	NM_016562.3	human	genbank	58_37c	+1	reviewed	missense	c.271	p.L91M	0.690	superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577518	7577518	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	17	7577518	7577518	T	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.763	p.I255F	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRMT112	0	genome.wustl.edu	37	11	64084394	64084394	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	11	64084394	64084394	A	C	SNP	TRMT112	NM_016404.1	human	genbank	58_37c	-1	provisional	missense	c.317	p.M106R	0.935	HMMPfam_Trm112p	HMMPfam_Trm112p	-	no_errors
WHAMM	0	genome.wustl.edu	37	15	83502073	83502073	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	15	83502073	83502073	A	G	SNP	WHAMM	NM_001080435.1	human	genbank	58_37c	+1	provisional	missense	c.2215	p.I739V	0.039	NULL	HMMPfam_WH2	-	no_errors
ZAR1L	0	genome.wustl.edu	37	13	32885924	32885924	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	13	32885924	32885924	G	C	SNP	ZAR1L	NM_001136571.1	human	genbank	58_37c	-1	reviewed	missense	c.139	p.P47A	0.074	NULL	NULL	-	no_errors
ZCCHC18	0	genome.wustl.edu	37	X	103360019	103360019	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	X	103360019	103360019	C	A	SNP	ZCCHC18	NR_026694.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
ZNF461	0	genome.wustl.edu	37	19	37129736	37129736	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	37129736	37129736	T	G	SNP	ZNF461	NM_153257.2	human	genbank	58_37c	-1	validated	missense	c.1511	p.K504T	0.994	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF671	0	genome.wustl.edu	37	19	58232994	58232994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L7-01A-11D-A142-09	TCGA-E2-A1L7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	33a09072-6554-4d46-b738-0852624940af	f5286adc-5c10-4b09-a433-daeca4c1f377	19	58232994	58232994	C	T	SNP	ZNF671	NM_024833.2	human	genbank	58_37c	-1	validated	missense	c.460	p.V154I	0.001	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
