Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM23	0	genome.wustl.edu	37	2	207406802	207406802	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	207406802	207406802	A	G	SNP	ADAM23	NM_003812.2	human	genbank	58_37c	+1	reviewed	silent	c.600	p.G200	0.683	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKAP4	0	genome.wustl.edu	37	X	49958245	49958245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	X	49958245	49958245	C	T	SNP	AKAP4	NM_003886.2	human	genbank	58_37c	-1	reviewed	silent	c.1119	p.R373	0.674	HMMPfam_AKAP_110,HMMSmart_SM00807	HMMPfam_AKAP_110,HMMPfam_RII_binding_1,HMMSmart_SM00807	-	no_errors
AQP7	0	genome.wustl.edu	37	9	33395134	33395135	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	33395134	33395135	-	CC	INS	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.86_85	p.L29fs	0.007:0.000	HMMPfam_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ARHGAP6	0	genome.wustl.edu	37	X	11162258	11162258	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	X	11162258	11162258	G	A	SNP	ARHGAP6	NM_013427.2	human	genbank	58_37c	-1	reviewed	missense	c.2018	p.S673F	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ARHGEF10L	0	genome.wustl.edu	37	1	17949512	17949512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	17949512	17949512	G	A	SNP	ARHGEF10L	NM_018125.3	human	genbank	58_37c	+1	validated	missense	c.1042	p.E348K	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like	-	no_errors
ATAD5	0	genome.wustl.edu	37	17	29214375	29214375	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	29214375	29214375	C	G	SNP	ATAD5	NM_024857.3	human	genbank	58_37c	+1	provisional	missense	c.4243	p.P1415A	0.982	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BZRAP1	0	genome.wustl.edu	37	17	56382935	56382935	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	56382935	56382935	T	C	SNP	BZRAP1	NM_004758.2	human	genbank	58_37c	-1	validated	missense	c.5327	p.N1776S	1.000	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_SH3_2	-	no_errors
C13orf28	0	genome.wustl.edu	37	13	113052452	113052452	+	Missense_Mutation	SNP	C	C	T	rs149389666	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	13	113052452	113052452	C	T	SNP	C13orf28	NM_145248.3	human	genbank	58_37c	+1	provisional	missense	c.241	p.H81Y	0.000	NULL	NULL	-	no_errors
C5orf42	0	genome.wustl.edu	37	5	37169187	37169187	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	5	37169187	37169187	A	T	SNP	C5orf42	NM_023073.3	human	genbank	58_37c	-1	predicted	missense	c.3579	p.N1193K	0.350	NULL	NULL	-	no_errors
C9orf89	0	genome.wustl.edu	37	9	95869982	95869982	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	95869982	95869982	C	G	SNP	C9orf89	NM_032310.3	human	genbank	58_37c	+1	validated	missense	c.34	p.Q12E	0.996	NULL	NULL	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56650054	56650055	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	3	56650054	56650055	-	CTC	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.1816_1817	p.607in_frame_insP	0.797:0.972	NULL	NULL	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68844245	68844245	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	16	68844245	68844245	G	A	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	splice_site	c.832+1	e6+1	1.000	-	-	-	no_errors
CEP110	0	genome.wustl.edu	37	9	123917201	123917201	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	123917201	123917201	C	G	SNP	CEP110	ENST00000373845	human	ensembl	58_37c	+1	known	missense	c.382	p.L128V	0.001	NULL	superfamily_tRNA-binding arm	-	no_errors
CLEC12A	0	genome.wustl.edu	37	12	10134707	10134707	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	10134707	10134707	A	C	SNP	CLEC12A	NM_138337.5	human	genbank	58_37c	+1	reviewed	missense	c.620	p.N207T	0.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
DNAH9	0	genome.wustl.edu	37	17	11650986	11650986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	11650986	11650986	G	A	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.6513	p.M2171I	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DTX2	0	genome.wustl.edu	37	7	76111950	76111950	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	76111950	76111950	C	G	SNP	DTX2	NM_001102594.1	human	genbank	58_37c	+1	validated	missense	c.394	p.L132V	0.998	HMMPfam_WWE,HMMSmart_SM00678	HMMSmart_SM00184,HMMPfam_WWE,HMMSmart_SM00678,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
EIF4H	0	genome.wustl.edu	37	7	73609623	73609623	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	73609623	73609623	A	G	SNP	EIF4H	NM_022170.1	human	genbank	58_37c	+1	reviewed	silent	c.732	p.Q244	0.003	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
ENPEP	0	genome.wustl.edu	37	4	111397859	111397859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	4	111397859	111397859	G	A	SNP	ENPEP	NM_001977.3	human	genbank	58_37c	+1	validated	missense	c.289	p.V97I	0.006	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6690	6690	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	MT	6690	6690	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	nonsense	c.787	p.G263*	NULL	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198840	0	genome.wustl.edu	37	MT	10306	10306	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	MT	10306	10306	A	C	SNP	ENSG00000198840	ENST00000361227	human	ensembl	58_37c	+1	known	missense	c.248	p.N83T	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2478	2478	+	RNA	SNP	G	A	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	MT	2478	2478	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2647	2647	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	MT	2647	2647	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000247634	0	genome.wustl.edu	37	7	66416138	66416139	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	66416138	66416139	TG	-	DEL	ENSG00000247634	ENST00000500273	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000248681	0	genome.wustl.edu	37	21	9738920	9738920	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	21	9738920	9738920	C	A	SNP	ENSG00000248681	ENST00000512548	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.165	-	-	-	no_errors
ENSG00000250217	0	genome.wustl.edu	37	14	20010310	20010310	+	RNA	SNP	A	A	G	rs4819442	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	14	20010310	20010310	A	G	SNP	ENSG00000250217	ENST00000510298	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors
FAM75C1	0	genome.wustl.edu	37	9	90535893	90535893	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	90535893	90535893	C	G	SNP	FAM75C1	NM_001145124.1	human	genbank	58_37c	+1	validated	silent	c.1071	p.A357	0.001	NULL	NULL	-	no_errors
FLJ35424	0	genome.wustl.edu	37	4	3578747	3578747	+	RNA	SNP	C	T	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	4	3578747	3578747	C	T	SNP	FLJ35424	XR_040705.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
GCC2	0	genome.wustl.edu	37	2	109092242	109092242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	109092242	109092242	G	T	SNP	GCC2	NM_181453.3	human	genbank	58_37c	+1	reviewed	missense	c.2996	p.R999L	0.000	NULL	HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
GNS	0	genome.wustl.edu	37	12	65133264	65133264	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	65133264	65133264	G	A	SNP	GNS	NM_002076.3	human	genbank	58_37c	-1	reviewed	silent	c.891	p.L297	0.998	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
GRIK2	0	genome.wustl.edu	37	6	102376327	102376327	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	6	102376327	102376327	A	C	SNP	GRIK2	NM_021956.4	human	genbank	58_37c	+1	reviewed	silent	c.1905	p.I635	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
KRTAP4-7	0	genome.wustl.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	39240627	39240627	T	C	SNP	KRTAP4-7	ENST00000377731	human	ensembl	58_37c	+1	known	missense	c.169	p.S57P	0.032	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	-	no_errors
LAMB3	0	genome.wustl.edu	37	1	209803184	209803184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	209803184	209803184	C	T	SNP	LAMB3	NM_000228.2	human	genbank	58_37c	-1	reviewed	missense	c.1030	p.D344N	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196	-	no_errors
LAMC1	0	genome.wustl.edu	37	1	183093773	183093773	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	183093773	183093773	A	C	SNP	LAMC1	NM_002293.3	human	genbank	58_37c	+1	reviewed	missense	c.2409	p.R803S	0.823	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196	HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196	-	no_errors
LGTN	0	genome.wustl.edu	37	1	206769083	206769083	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	206769083	206769083	C	G	SNP	LGTN	NM_006893.2	human	genbank	58_37c	-1	reviewed	missense	c.1493	p.R498T	1.000	HMMPfam_SUI1,superfamily_eIF1-like	HMMPfam_SUI1,superfamily_eIF1-like,HMMSmart_SM00359,superfamily_SWIB/MDM2 domain,superfamily_PUA domain-like	-	no_errors
LILRB1	0	genome.wustl.edu	37	19	55144208	55144208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	19	55144208	55144208	G	A	SNP	LILRB1	NM_001081637.1	human	genbank	58_37c	+1	reviewed	missense	c.955	p.A319T	0.000	HMMSmart_IG,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LMNA	0	genome.wustl.edu	37	1	156104249	156104249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	156104249	156104249	G	A	SNP	LMNA	NM_170707.2	human	genbank	58_37c	+1	reviewed	missense	c.569	p.R190Q	1.000	HMMPfam_Filament	HMMPfam_IF_tail,HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain	-	no_errors
LOC400986	0	genome.wustl.edu	37	2	96521224	96521224	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	96521224	96521224	C	T	SNP	LOC400986	XM_001717763.2	human	genbank	58_37c	-1	model	silent	c.3741	p.Q1247	0.998	NULL	NULL	-	no_errors
LOC730066	0	genome.wustl.edu	37	19	54007316	54007316	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	19	54007316	54007316	C	A	SNP	LOC730066	XR_016072.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.352	-	-	-	pseudogene
MEA1	0	genome.wustl.edu	37	6	42981072	42981072	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	6	42981072	42981072	A	G	SNP	MEA1	NM_014623.2	human	genbank	58_37c	-1	validated	silent	c.84	p.R28	0.975	HMMPfam_MEA1	HMMPfam_MEA1	-	no_errors
MGAM	0	genome.wustl.edu	37	7	141794453	141794453	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	141794453	141794453	A	T	SNP	MGAM	NM_004668.2	human	genbank	58_37c	+1	reviewed	missense	c.4652	p.Y1551F	1.000	HMMPfam_Glyco_hydro_31	HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil	-	no_errors
NUP210L	0	genome.wustl.edu	37	1	153974380	153974380	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	153974380	153974380	T	C	SNP	NUP210L	NM_207308.2	human	genbank	58_37c	-1	validated	missense	c.5012	p.Y1671C	0.993	NULL	HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin	-	no_errors
OR11H1	0	genome.wustl.edu	37	22	16449539	16449539	+	Missense_Mutation	SNP	A	A	G	rs61969156	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	22	16449539	16449539	A	G	SNP	OR11H1	NM_001005239.1	human	genbank	58_37c	-1	provisional	missense	c.266	p.V89A	0.234	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR1B1	0	genome.wustl.edu	37	9	125391118	125391118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	125391118	125391118	G	A	SNP	OR1B1	NM_001004450.1	human	genbank	58_37c	-1	provisional	missense	c.697	p.R233C	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RBL1	0	genome.wustl.edu	37	20	35661256	35661256	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	20	35661256	35661256	T	G	SNP	RBL1	NM_002895.2	human	genbank	58_37c	-1	reviewed	missense	c.2194	p.I732L	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like	-	no_errors
SMARCA2	0	genome.wustl.edu	37	9	2054717	2054717	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	2054717	2054717	G	T	SNP	SMARCA2	NM_003070.3	human	genbank	58_37c	+1	reviewed	missense	c.1167	p.Q389H	0.888	NULL	HMMPfam_SNF2_N,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_QLQ,PatternScan_BROMODOMAIN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SP100	0	genome.wustl.edu	37	2	231334505	231334508	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	231334505	231334508	AAAG	-	DEL	SP100	ENST00000341950	human	ensembl	58_37c	+1	known	frame_shift_del	c.1359_1362	p.K454fs	0.006:0.006:0.010:0.013	NULL	HMMPfam_Sp100	-	no_errors
TYK2	0	genome.wustl.edu	37	19	10475700	10475701	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	19	10475700	10475701	-	C	INS	TYK2	NM_003331.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1036_1035	p.N345fs	0.004:0.009	NULL	HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550	-	no_errors
