Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKR1C2	0	genome.wustl.edu	37	10	5034041	5034041	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	10	5034041	5034041	C	T	SNP	AKR1C2	NM_001354.4	human	genbank	58_37c	-1	reviewed	missense	c.911	p.R304Q	0.030	superfamily_Aldo/ket_red	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
CREB3L4	0	genome.wustl.edu	37	1	153945720	153945720	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	153945720	153945720	G	C	SNP	CREB3L4	NM_130898.2	human	genbank	58_37c	+1	provisional	missense	c.793	p.E265Q	1.000	HMMSmart_BRLZ,HMMPfam_bZIP_1	HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
CYHR1	0	genome.wustl.edu	37	8	145675924	145675924	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	8	145675924	145675924	G	C	SNP	CYHR1	NM_138496.1	human	genbank	58_37c	-1	validated	missense	c.927	p.D309E	0.236	NULL	superfamily_TRAF domain-like,superfamily_RING/U-box	-	no_errors
DCHS1	0	genome.wustl.edu	37	11	6662745	6662746	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	11	6662745	6662746	-	CAG	INS	DCHS1	NM_003737.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.100_99	p.33in_frame_insL	1.000:1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
EIF2C1	0	genome.wustl.edu	37	1	36358824	36358824	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	36358824	36358824	C	G	SNP	EIF2C1	NM_012199.2	human	genbank	58_37c	+1	reviewed	missense	c.457	p.P153A	1.000	superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
FAHD2A	0	genome.wustl.edu	37	2	96078498	96078498	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	96078498	96078498	C	G	SNP	FAHD2A	NM_016044.2	human	genbank	58_37c	+1	validated	missense	c.868	p.P290A	1.000	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel	-	no_errors
FAM13A	0	genome.wustl.edu	37	4	89708952	89708952	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	4	89708952	89708952	C	A	SNP	FAM13A	NM_014883.2	human	genbank	58_37c	-1	validated	missense	c.1223	p.R408L	0.990	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
FREM3	0	genome.wustl.edu	37	4	144614306	144614306	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	4	144614306	144614306	G	A	SNP	FREM3	ENST00000329798	human	ensembl	58_37c	-1	known	silent	c.5235	p.N1745	0.948	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
GPRASP1	0	genome.wustl.edu	37	X	101911705	101911705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	X	101911705	101911705	C	G	SNP	GPRASP1	NM_001099410.1	human	genbank	58_37c	+1	reviewed	missense	c.2864	p.A955G	0.000	NULL	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
HIST1H2AK	0	genome.wustl.edu	37	6	27806084	27806084	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	6	27806084	27806084	G	C	SNP	HIST1H2AK	NM_003510.2	human	genbank	58_37c	-1	reviewed	missense	c.34	p.R12G	0.989	HMMSmart_SM00414,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IGFN1	0	genome.wustl.edu	37	1	201182360	201182360	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	201182360	201182360	C	A	SNP	IGFN1	ENST00000412892	human	ensembl	58_37c	+1	known	silent	c.591	p.V197	0.003	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA0317	0	genome.wustl.edu	37	14	75136706	75136706	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	14	75136706	75136706	C	A	SNP	KIAA0317	NM_001039479.1	human	genbank	58_37c	-1	validated	missense	c.1732	p.A578S	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,superfamily_E set domains,HMMPfam_Filamin	-	no_errors
LILRA5	0	genome.wustl.edu	37	19	54823313	54823313	+	Missense_Mutation	SNP	C	C	T	rs146444616	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	19	54823313	54823313	C	T	SNP	LILRA5	NM_021250.2	human	genbank	58_37c	-1	reviewed	missense	c.230	p.R77H	0.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC100288652	0	genome.wustl.edu	37	10	1206721	1206721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	10	1206721	1206721	C	T	SNP	LOC100288652	XM_002342968.1	human	genbank	58_37c	-1	model	missense	c.100	p.A34T	0.007	NULL	NULL	-	no_errors
LOC387820	0	genome.wustl.edu	37	11	127811605	127811605	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	11	127811605	127811605	G	A	SNP	LOC387820	XR_017453.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123524	16123524	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	22	16123524	16123524	A	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRC8A	0	genome.wustl.edu	37	9	131678540	131678540	+	Missense_Mutation	SNP	G	G	C	rs146661687	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	9	131678540	131678540	G	C	SNP	LRRC8A	NM_001127244.1	human	genbank	58_37c	+1	reviewed	missense	c.2323	p.E775Q	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
MRPS31	0	genome.wustl.edu	37	13	41333214	41333214	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	13	41333214	41333214	C	G	SNP	MRPS31	NM_005830.3	human	genbank	58_37c	-1	reviewed	missense	c.469	p.A157P	0.999	NULL	NULL	-	no_errors
MSTN	0	genome.wustl.edu	37	2	190925034	190925034	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	190925034	190925034	T	A	SNP	MSTN	NM_005259.2	human	genbank	58_37c	-1	reviewed	silent	c.501	p.T167	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,PatternScan_EF_HAND_1,superfamily_Cystine-knot cytokines	-	no_errors
NARG2	0	genome.wustl.edu	37	15	60720860	60720860	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	15	60720860	60720860	G	C	SNP	NARG2	NM_024611.4	human	genbank	58_37c	-1	validated	missense	c.2588	p.S863C	1.000	HMMPfam_NARG2_C	HMMPfam_NARG2_C	-	no_errors
OR11L1	0	genome.wustl.edu	37	1	248005024	248005024	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	248005024	248005024	T	G	SNP	OR11L1	NM_001001959.1	human	genbank	58_37c	-1	provisional	missense	c.175	p.M59L	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26698897	26698897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	26698897	26698897	G	A	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.2876	p.A959V	0.911	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PTCD1	0	genome.wustl.edu	37	7	99021452	99021452	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	7	99021452	99021452	T	C	SNP	PTCD1	NM_015545.2	human	genbank	58_37c	-1	validated	silent	c.1866	p.E622	0.991	HMMPfam_PPR	HMMPfam_PPR	-	no_errors
RALY	0	genome.wustl.edu	37	20	32664864	32664865	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	20	32664864	32664865	-	CAG	INS	RALY	NM_016732.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.689_690	p.231in_frame_insS	0.001:0.001	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RPL6	0	genome.wustl.edu	37	12	112846113	112846113	+	Silent	SNP	G	G	C	rs17851814	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	12	112846113	112846113	G	C	SNP	RPL6	NM_000970.3	human	genbank	58_37c	-1	reviewed	silent	c.267	p.L89	0.291	HMMPfam_Ribosomal_L6e_N	HMMPfam_Ribosomal_L6e,PatternScan_RIBOSOMAL_L6E,HMMPfam_Ribosomal_L6e_N	-	no_errors
SYNPR	0	genome.wustl.edu	37	3	63466619	63466619	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	3	63466619	63466619	G	C	SNP	SYNPR	NM_001130003.1	human	genbank	58_37c	+1	validated	missense	c.196	p.A66P	1.000	HMMPfam_MARVEL	PatternScan_SYNAPTOP,HMMPfam_MARVEL	-	no_errors
TRIM59	0	genome.wustl.edu	37	3	160156134	160156134	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	3	160156134	160156134	G	A	SNP	TRIM59	NM_173084.2	human	genbank	58_37c	-1	validated	nonsense	c.838	p.R280*	0.986	NULL	HMMPfam_zf-B_box,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
TTC3	0	genome.wustl.edu	37	21	38524309	38524309	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	21	38524309	38524309	C	A	SNP	TTC3	NM_001001894.1	human	genbank	58_37c	+1	validated	missense	c.2393	p.P798H	0.898	superfamily_Spectrin,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMSmart_TPR,superfamily_Spectrin,superfamily_SSF48452,superfamily_SSF57850	-	no_errors
TUBBP5	0	genome.wustl.edu	37	9	141071521	141071543	+	RNA	DEL	TGTCTCAGAGCAGTTTACAGCAA	TGTCTCAGAGCAGTTTACAGCAA	-	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	TGTCTCAGAGCAGTTTACAGCAA	TGTCTCAGAGCAGTTTACAGCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	9	141071521	141071543	TGTCTCAGAGCAGTTTACAGCAA	-	DEL	TUBBP5	NR_027156.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	pseudogene
TUBGCP5	0	genome.wustl.edu	37	15	22855186	22855186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	15	22855186	22855186	G	A	SNP	TUBGCP5	NM_001102610.1	human	genbank	58_37c	+1	validated	silent	c.1647	p.V549	1.000	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
USH2A	0	genome.wustl.edu	37	1	215932045	215932045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	215932045	215932045	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.11281	p.D3761N	0.978	superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
WDR52	0	genome.wustl.edu	37	3	113060733	113060733	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	3	113060733	113060733	T	C	SNP	WDR52	ENST00000393845	human	ensembl	58_37c	-1	known	missense	c.739	p.I247V	0.001	NULL	NULL	-	no_errors
