Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA2	0	genome.wustl.edu	37	9	139905720	139905720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	9	139905720	139905720	G	A	SNP	ABCA2	ENST00000479446	human	ensembl	58_37c	-1	known	missense	c.3890	p.S1297L	1.000	NULL	PatternScan_LIPOCALIN,HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_EGF_1,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ADAM23	0	genome.wustl.edu	37	2	207406859	207406859	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	207406859	207406859	G	A	SNP	ADAM23	NM_003812.2	human	genbank	58_37c	+1	reviewed	splice_site	c.656+1	e5+1	1.000	-	-	-	no_errors
C6orf62	0	genome.wustl.edu	37	6	24709014	24709017	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	CTGT	CTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	6	24709014	24709017	CTGT	-	DEL	C6orf62	NM_030939.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.555_552	p.R184fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors
CDK12	0	genome.wustl.edu	37	17	37667857	37667857	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	17	37667857	37667857	A	C	SNP	CDK12	NM_016507.2	human	genbank	58_37c	+1	validated	silent	c.2742	p.T914	0.948	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DAXX	0	genome.wustl.edu	37	6	33288577	33288582	+	In_Frame_Del	DEL	CTGTAA	CTGTAA	-	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	CTGTAA	CTGTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	6	33288577	33288582	CTGTAA	-	DEL	DAXX	NM_001141970.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1011_1006	p.LQ336in_frame_del	1.000:1.000:1.000:1.000:1.000:0.997	HMMPfam_Daxx	HMMPfam_Daxx	-	no_errors
DHX40	0	genome.wustl.edu	37	17	57652830	57652830	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	17	57652830	57652830	C	T	SNP	DHX40	NM_024612.4	human	genbank	58_37c	+1	reviewed	missense	c.971	p.T324I	1.000	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNASE1L3	0	genome.wustl.edu	37	3	58178422	58178422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	3	58178422	58178422	G	A	SNP	DNASE1L3	NM_004944.2	human	genbank	58_37c	-1	reviewed	missense	c.910	p.R304C	0.000	NULL	HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMSmart_SM00476,PatternScan_DNASE_I_2,PatternScan_DNASE_I_1	-	no_errors
ELOVL6	0	genome.wustl.edu	37	4	111026713	111026713	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	4	111026713	111026713	C	G	SNP	ELOVL6	NM_001130721.1	human	genbank	58_37c	-1	validated	missense	c.161	p.R54P	1.000	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors
ENSG00000198695	0	genome.wustl.edu	37	MT	14325	14325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	MT	14325	14325	T	C	SNP	ENSG00000198695	ENST00000361681	human	ensembl	58_37c	-1	known	missense	c.349	p.N117D	NULL	HMMPfam_Oxidored_q3	HMMPfam_Oxidored_q3	-	mismatch_between_exon_seq_and_reference
EYA4	0	genome.wustl.edu	37	6	133783605	133783605	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	6	133783605	133783605	G	T	SNP	EYA4	NM_004100.4	human	genbank	58_37c	+1	reviewed	missense	c.570	p.L190F	1.000	NULL	HMMPfam_Hydrolase	-	no_errors
FERD3L	0	genome.wustl.edu	37	7	19184779	19184780	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	7	19184779	19184780	-	A	INS	FERD3L	NM_152898.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.207_206	p.D70fs	0.001:0.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	10	135438753	135438753	G	A	SNP	FRG2B	NM_001080998.1	human	genbank	58_37c	-1	provisional	silent	c.687	p.T229	0.707	NULL	NULL	-	no_errors
GBP3	0	genome.wustl.edu	37	1	89477458	89477458	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	1	89477458	89477458	A	T	SNP	GBP3	NM_018284.2	human	genbank	58_37c	-1	reviewed	missense	c.1121	p.V374E	0.001	HMMPfam_GBP_C,superfamily_GBP	HMMPfam_GBP_C,superfamily_GBP,superfamily_SSF52540	-	no_errors
HDAC8	0	genome.wustl.edu	37	X	71681922	71681922	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	X	71681922	71681922	G	A	SNP	HDAC8	NM_018486.2	human	genbank	58_37c	-1	reviewed	nonsense	c.937	p.R313*	1.000	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	-	no_errors
IKBKAP	0	genome.wustl.edu	37	9	111655314	111655314	+	Missense_Mutation	SNP	C	C	G	rs146198104	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	9	111655314	111655314	C	G	SNP	IKBKAP	NM_003640.3	human	genbank	58_37c	-1	reviewed	missense	c.2910	p.L970F	0.995	NULL	HMMPfam_IKI3,superfamily_Amine_DH_B_like	-	no_errors
KRTAP4-3	0	genome.wustl.edu	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byFrequency	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	17	39324333	39324333	T	A	SNP	KRTAP4-3	NM_033187.1	human	genbank	58_37c	-1	validated	missense	c.92	p.Q31L	0.052	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP4-6	0	genome.wustl.edu	37	17	39296555	39296555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	17	39296555	39296555	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	58_37c	-1	known	missense	c.185	p.R62H	0.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LILRB4	0	genome.wustl.edu	37	19	55175654	55175654	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	55175654	55175654	A	C	SNP	LILRB4	NM_006847.3	human	genbank	58_37c	+1	reviewed	missense	c.373	p.T125P	0.036	superfamily_Immunoglobulin	HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC100288406	0	genome.wustl.edu	37	12	92119	92119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	12	92119	92119	T	C	SNP	LOC100288406	XM_002343141.1	human	genbank	58_37c	+1	model	missense	c.143	p.V48A	0.000	NULL	NULL	-	pseudogene
LOC440300	0	genome.wustl.edu	37	15	84859865	84859865	+	RNA	SNP	A	A	G	rs466200	byFrequency	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	15	84859865	84859865	A	G	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.934	-	-	-	pseudogene
MUC16	0	genome.wustl.edu	37	19	9068688	9068688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	9068688	9068688	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.18758	p.S6253L	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1090928	1090928	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	11	1090928	1090928	A	C	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.3823	p.T1275P	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MYO7B	0	genome.wustl.edu	37	2	128364902	128364902	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	128364902	128364902	G	A	SNP	MYO7B	NM_001080527.1	human	genbank	58_37c	+1	provisional	missense	c.2546	p.R849H	1.000	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NLRP7	0	genome.wustl.edu	37	19	55451000	55451000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	55451000	55451000	C	A	SNP	NLRP7	NM_001127255.1	human	genbank	58_37c	-1	reviewed	missense	c.1187	p.R396L	0.012	NULL	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OPCML	0	genome.wustl.edu	37	11	132527109	132527109	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	11	132527109	132527109	C	A	SNP	OPCML	NM_002545.3	human	genbank	58_37c	-1	reviewed	silent	c.273	p.L91	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
OR1F2P	0	genome.wustl.edu	37	16	3266105	3266105	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	16	3266105	3266105	C	T	SNP	OR1F2P	NR_002169.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.051	-	-	-	pseudogene
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PJA1	0	genome.wustl.edu	37	X	68382137	68382137	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	X	68382137	68382137	G	C	SNP	PJA1	NM_145119.3	human	genbank	58_37c	-1	reviewed	silent	c.945	p.G315	0.003	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RAB21	0	genome.wustl.edu	37	12	72149064	72149064	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	12	72149064	72149064	T	C	SNP	RAB21	NM_014999.2	human	genbank	58_37c	+1	provisional	missense	c.155	p.L52P	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RBBP6	0	genome.wustl.edu	37	16	24560353	24560353	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	16	24560353	24560353	A	G	SNP	RBBP6	NM_032626.5	human	genbank	58_37c	+1	reviewed	silent	c.354	p.L118	0.993	NULL	HMMPfam_DWNN	-	no_errors
RBM44	0	genome.wustl.edu	37	2	238728887	238728887	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	238728887	238728887	A	C	SNP	RBM44	NM_001080504.2	human	genbank	58_37c	+1	validated	missense	c.1809	p.R603S	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RGPD3	0	genome.wustl.edu	37	2	107029550	107029550	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	107029550	107029550	C	T	SNP	RGPD3	NM_001144013.1	human	genbank	58_37c	-1	validated	silent	c.5256	p.A1752	0.997	HMMSmart_Grip	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RHBDF1	0	genome.wustl.edu	37	16	109808	109808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	16	109808	109808	C	T	SNP	RHBDF1	NM_022450.3	human	genbank	58_37c	-1	validated	missense	c.1739	p.S580N	0.998	NULL	HMMPfam_Rhomboid	-	no_errors
SF3B1	0	genome.wustl.edu	37	2	198267481	198267481	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	2	198267481	198267481	T	C	SNP	SF3B1	NM_012433.2	human	genbank	58_37c	-1	reviewed	missense	c.1876	p.N626D	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_SF3b1,superfamily_ARM repeat	-	no_errors
SMARCA4	0	genome.wustl.edu	37	19	11113837	11113837	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	11113837	11113837	T	G	SNP	SMARCA4	NM_001128849.1	human	genbank	58_37c	+1	reviewed	splice_site	c.1943+2	e11+2	1.000	-	-	-	no_errors
TARS	0	genome.wustl.edu	37	5	33457372	33457372	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	5	33457372	33457372	C	T	SNP	TARS	NM_152295.3	human	genbank	58_37c	+1	reviewed	missense	c.848	p.T283M	1.000	HMMPfam_tRNA_SAD,superfamily_ThrRS/AlaRS common domain	HMMPfam_tRNA-synt_2b,HMMPfam_TGS,HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS,superfamily_TGS-like,HMMPfam_tRNA_SAD,superfamily_ThrRS/AlaRS common domain,superfamily_Class II aaRS and biotin synthetases	-	no_errors
TPTE	0	genome.wustl.edu	37	21	10914388	10914388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	21	10914388	10914388	G	A	SNP	TPTE	NM_199261.2	human	genbank	58_37c	-1	validated	missense	c.1331	p.S444F	0.028	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels	-	no_errors
TRPM1	0	genome.wustl.edu	37	15	31338429	31338429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	15	31338429	31338429	G	T	SNP	TRPM1	NM_002420.4	human	genbank	58_37c	-1	reviewed	missense	c.1706	p.A569D	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
TSPAN16	0	genome.wustl.edu	37	19	11409546	11409546	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	19	11409546	11409546	A	C	SNP	TSPAN16	NM_012466.2	human	genbank	58_37c	+1	reviewed	splice_site	c.268-2	e3-2	0.627	-	-	-	no_errors
ZAN	0	genome.wustl.edu	37	7	100385562	100385596	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	7	100385562	100385596	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	DEL	ZAN	NM_003386.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.7030_7064	p.A2344fs	0.013:0.005:0.000:0.001:0.000:0.000:0.005:0.239:0.512:0.532:0.543:0.259:0.193:0.551:0.747:0.746:0.691:0.313:0.001:0.036:0.867:0.876:0.710:0.622:0.357:0.357:0.884:0.969:0.998:1.000:1.000:1.000:1.000:0.989:0.652	NULL	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF217	0	genome.wustl.edu	37	20	52192684	52192684	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1R3-01A-31D-A14K-09	TCGA-E9-A1R3-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba6af877-7a23-4738-a867-01a5dd8a8050	841d08d8-8abb-410f-9907-d96af416aa1e	20	52192684	52192684	G	A	SNP	ZNF217	NM_006526.2	human	genbank	58_37c	-1	validated	silent	c.2619	p.L873	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
