Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF831	128611	broad.mit.edu	36	20	57199614	57199615	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178457	exon1	c.145_146insC	p.A49fs	.	.	.
MARCKSL1	65108	broad.mit.edu	36	1	32573126	32573127	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023009	exon2	c.247_248insC	p.K83fs	.	.	.
HOXB2	3212	broad.mit.edu	36	17	43977000	43977001	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002145	exon1	c.273_274insC	p.P91fs	.	.	.
TP53	7157	broad.mit.edu	36	17	7520315	7520316	+	Splice_Site	INS	-	CT	CT	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126112	exon4	c.97_98insAG	p.S33fs	.	.	.
ACO1	48	broad.mit.edu	36	9	32421754	32421755	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002197	exon15	c.1764_1765insA	p.D588fs	.	.	.
EIF2AK1	27102	broad.mit.edu	36	7	6030533	6030534	+	Splice_Site	INS	-	AGA	AGA	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PMPCB	9512	broad.mit.edu	36	7	102727872	102727872	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004279	exon4	c.G339C	p.K113N	.	.	.
ORC5	5001	broad.mit.edu	36	7	103588846	103588846	+	Silent	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002553	exon12	c.G1059C	p.G353G	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111249706	111249706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014705	exon27	c.C2878T	p.R960C	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21549597	21549597	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003777	exon1	c.T209C	p.L70P	.	.	.
IQCE	23288	broad.mit.edu	36	7	2584484	2584484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152558	exon7	c.G548A	p.R183Q	.	.	.
SKAP2	8935	broad.mit.edu	36	7	26744985	26744985	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003930	exon6	c.G423T	p.W141C	.	.	.
RALA	5898	broad.mit.edu	36	7	39712276	39712276	+	Silent	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005402	exon5	c.A528T	p.R176R	.	.	.
AEBP1	165	broad.mit.edu	36	7	44119777	44119777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129	exon21	c.G2869A	p.A957T	.	.	.
LIMK1	3984	broad.mit.edu	36	7	73173432	73173432	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002314	exon16	c.G1809A	p.W603X	.	.	.
DTX2	113878	broad.mit.edu	36	7	75969580	75969580	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102595	exon7	c.C1260T	p.S420S	.	.	.
GRM3	2913	broad.mit.edu	36	7	86232542	86232542	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000840	exon2	c.G145A	p.E49K	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95502936	95502936	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004411	exon13	c.G1351C	p.D451H	.	.	.
NPTX2	4885	broad.mit.edu	36	7	98095777	98095777	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002523	exon5	c.C1196G	p.P399R	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34864887	34864887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080627	exon11	c.C3125T	p.A1042V	.	.	.
SEMG2	6407	broad.mit.edu	36	20	43285116	43285116	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003008	exon2	c.C1429T	p.R477X	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4724522	4724522	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170774	exon4	c.C226T	p.R76C	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23603363	23603363	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138360	exon32	c.C3048T	p.F1016F	.	.	.
CECR1	51816	broad.mit.edu	36	22	16052656	16052656	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177405	exon2	c.G75A	p.V25V	.	.	.
MMP11	4320	broad.mit.edu	36	22	22452836	22452836	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005940	exon4	c.A550G	p.K184E	.	.	.
DNASE2	1777	broad.mit.edu	36	19	12850212	12850212	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001375	exon5	c.C693T	p.F231F	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42132371	42132371	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198539	exon7	c.C476T	p.A159V	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667042	42667042	+	Silent	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144694	exon5	c.C678G	p.V226V	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42882440	42882440	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032689	exon5	c.T432G	p.C144W	.	.	.
RYR1	6261	broad.mit.edu	36	19	43678949	43678949	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001042723	exon41	c.A6724G	p.I2242V	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46047585	46047586	+	Nonsense_Mutation	DNP	GA	TT	TT	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000762	exon2	c.320_321AA	.	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52116539	52116539	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004491	exon1	c.C2767A	p.P923T	.	.	.
GLTSCR1	29998	broad.mit.edu	36	19	52890033	52890033	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015711	exon9	c.C2960A	p.T987N	.	.	.
TPRX1	284355	broad.mit.edu	36	19	52997685	52997685	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198479	exon2	c.C395A	p.P132Q	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57611475	57611475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032423	exon7	c.C1558T	p.P520S	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59450561	59450561	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001081442	exon6	c.G1104T	p.K368N	.	.	.
EPN1	29924	broad.mit.edu	36	19	60895915	60895915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130072	exon8	c.C1118T	p.P373L	.	.	.
ZNF582	147948	broad.mit.edu	36	19	61588157	61588157	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144690	exon5	c.A441C	p.E147D	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338316	62338316	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052882	exon5	c.T1201C	p.F401L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8943718	8943718	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024690	exon1	c.A9097T	p.S3033C	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385696	9385696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006631	exon11	c.G905T	p.G302V	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100589239	100589239	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017890	exon28	c.T4223G	p.L1408R	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104523019	104523019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015420	exon10	c.G1703A	p.R568Q	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104778502	104778502	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100117	exon2	c.G189A	p.Q63Q	.	.	.
RSPO2	340419	broad.mit.edu	36	8	109042192	109042192	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178565	exon4	c.T313C	p.F105L	.	.	.
LY6K	54742	broad.mit.edu	36	8	143781539	143781539	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017527	exon3	c.G246A	p.A82A	.	.	.
SPATC1	375686	broad.mit.edu	36	8	145168209	145168209	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198572	exon4	c.C1395T	p.R465R	.	.	.
ADAMDEC1	27299	broad.mit.edu	36	8	24312355	24312355	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145272	exon8	c.A549C	p.Q183H	.	.	.
DPYSL2	1808	broad.mit.edu	36	8	26561201	26561201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001386	exon11	c.G1249A	p.V417I	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2796199	2796199	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033225	exon66	c.T10046C	p.F3349S	.	.	.
RNF122	79845	broad.mit.edu	36	8	33526501	33526501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024787	exon5	c.G322A	p.V108M	.	.	.
RB1CC1	9821	broad.mit.edu	36	8	53720829	53720829	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001083617	exon16	c.A3973G	p.I1325V	.	.	.
RP1	6101	broad.mit.edu	36	8	55702383	55702383	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006269	exon4	c.C3388G	p.L1130V	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011347	74011347	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004770	exon3	c.C1203A	p.C401X	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74012178	74012178	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004770	exon3	c.C2034T	p.L678L	.	.	.
CPNE3	8895	broad.mit.edu	36	8	87639751	87639751	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003909	exon17	c.G1611T	p.Q537H	.	.	.
DRAM2	128338	broad.mit.edu	36	1	111470414	111470414	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178454	exon4	c.A157G	p.K53E	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114943458	114943458	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198459	exon13	c.C2072A	p.S691Y	.	.	.
OTUD7B	56957	broad.mit.edu	36	1	148188684	148188684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020205	exon8	c.C910T	p.H304Y	.	.	.
LCE1F	353137	broad.mit.edu	36	1	151015773	151015773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178354	exon1	c.C302T	p.A101V	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152490699	152490699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014847	exon14	c.C1610T	p.T537I	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153896553	153896553	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198901	exon10	c.C1772A	p.A591D	.	.	.
NES	10763	broad.mit.edu	36	1	154907046	154907046	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006617	exon4	c.G3558A	p.A1186A	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155932673	155932673	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052939	exon7	c.A913G	p.M305V	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156992246	156992246	+	Silent	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005184	exon1	c.T1017G	p.G339G	.	.	.
C1orf226	400793	broad.mit.edu	36	1	160618419	160618419	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085375	exon1	c.C104G	p.S35C	.	.	.
CEP350	9857	broad.mit.edu	36	1	178249703	178249703	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014810	exon10	c.G1492C	p.E498Q	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182209499	182209499	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015101	exon4	c.T501G	p.D167E	.	.	.
IVNS1ABP	10625	broad.mit.edu	36	1	183535810	183535810	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006469	exon13	c.G1445C	p.C482S	.	.	.
IGSF21	84966	broad.mit.edu	36	1	18564653	18564653	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032880	exon6	c.G890A	p.G297D	.	.	.
PLA2G2F	64600	broad.mit.edu	36	1	20347478	20347478	+	Silent	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022819	exon5	c.C633A	p.P211P	.	.	.
LYPLAL1	127018	broad.mit.edu	36	1	217419187	217419187	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138794	exon2	c.T167C	p.I56T	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226571189	226571189	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon51	c.C13442G	p.T4481S	.	.	.
PGBD5	79605	broad.mit.edu	36	1	228559433	228559433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024554	exon2	c.C382T	p.R128C	.	.	.
ZP4	57829	broad.mit.edu	36	1	236117334	236117334	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021186	exon5	c.T704A	p.F235Y	.	.	.
FMN2	56776	broad.mit.edu	36	1	238438553	238438553	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020066	exon5	c.G3818T	p.G1273V	.	.	.
WDR64	128025	broad.mit.edu	36	1	239979503	239979503	+	Silent	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144625	exon13	c.G1596C	p.G532G	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329424	246329424	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_175911	exon3	c.T124C	p.S42P	.	.	.
CLSPN	63967	broad.mit.edu	36	1	36001417	36001417	+	Silent	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190481	exon4	c.T675C	p.S225S	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273176	46273176	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015112	exon29	c.C4248T	p.A1416A	.	.	.
PKN2	5586	broad.mit.edu	36	1	89044254	89044254	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006256	exon12	c.C1769T	p.S590F	.	.	.
WDR77	79084	broad.mit.edu	36	1	111793290	111793290	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024102	exon1	c.25delC	p.L9X	.	.	.
OR6M1	390261	broad.mit.edu	36	11	123181544	123181544	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005325	exon1	c.A724G	p.I242V	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13367068	13367068	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032320	exon9	c.C1314G	p.D438E	.	.	.
CAT	847	broad.mit.edu	36	11	34446428	34446428	+	Silent	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001752	exon11	c.G1344C	p.V448V	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870418	55870418	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001002907	exon1	c.T328G	p.F110V	.	.	.
CCDC86	79080	broad.mit.edu	36	11	60372005	60372005	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024098	exon2	c.G791A	p.R264H	.	.	.
SYT7	9066	broad.mit.edu	36	11	61047184	61047184	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004200	exon8	c.C1046T	p.T349M	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6600048	6600048	+	Silent	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003737	exon21	c.T9435G	p.G3145G	.	.	.
ALG8	79053	broad.mit.edu	36	11	77493099	77493099	+	Silent	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007027	exon11	c.G1227C	p.L409L	.	.	.
ME3	10873	broad.mit.edu	36	11	85835785	85835785	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161586	exon12	c.C1350T	p.C450C	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726183	91726183	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon1	c.C1257T	p.Y419Y	.	.	.
HACE1	57531	broad.mit.edu	36	6	105351288	105351288	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020771	exon9	c.T751C	p.Y251H	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165783787	165783787	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006661	exon5	c.A249T	p.E83D	.	.	.
TJAP1	93643	broad.mit.edu	36	6	43577380	43577380	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146016	exon6	c.C267G	p.D89E	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83919955	83919955	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015018	exon31	c.G6136C	p.A2046P	.	.	.
CGA	1081	broad.mit.edu	36	6	87852736	87852736	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000735	exon3	c.A224C	p.K75T	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90637733	90637733	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137667	exon9	c.G5797C	p.D1933H	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94124760	94124760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004440	exon4	c.C923A	p.S308Y	.	.	.
HECA	51696	broad.mit.edu	36	6	139529173	139529175	+	In_Frame_Del	DEL	GAC	-	-	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016217	exon2	c.331_333del	p.111_111del	.	.	.
ELAC2	60528	broad.mit.edu	36	17	12849991	12849991	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165962	exon8	c.C649T	p.L217F	.	.	.
HS3ST3A1	9955	broad.mit.edu	36	17	13445043	13445043	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006042	exon1	c.C129T	p.A43A	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16397330	16397330	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020653	exon6	c.T851C	p.F284S	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4045072	4045072	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020740	exon10	c.C1322G	p.A441G	.	.	.
CSH2	1443	broad.mit.edu	36	17	59304355	59304355	+	Silent	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022645	exon2	c.C87A	p.T29T	.	.	.
RGS9	8787	broad.mit.edu	36	17	60651618	60651618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003835	exon18	c.G1444A	p.V482M	.	.	.
TMEM104	54868	broad.mit.edu	36	17	70285069	70285069	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017728	exon2	c.C5T	p.A2V	.	.	.
SGSH	6448	broad.mit.edu	36	17	75800495	75800495	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000199	exon7	c.C919G	p.Q307E	.	.	.
SLC26A11	284129	broad.mit.edu	36	17	75810113	75810113	+	Silent	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166349	exon2	c.C159A	p.V53V	.	.	.
HUNK	30811	broad.mit.edu	36	21	32253070	32253070	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014586	exon5	c.C791T	p.T264M	.	.	.
ACSM2A	123876	broad.mit.edu	36	16	20405475	20405475	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010845	exon15	c.A1708G	p.M570V	.	.	.
HS3ST2	9956	broad.mit.edu	36	16	22733815	22733815	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006043	exon1	c.G383T	p.R128L	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30656000	30656000	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006662	exon34	c.C7138T	p.R2380W	.	.	.
CCDC113	29070	broad.mit.edu	36	16	56869967	56869967	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142302	exon7	c.C810T	p.Y270Y	.	.	.
PRSS54	221191	broad.mit.edu	36	16	56882533	56882533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080492	exon4	c.G94A	p.V32I	.	.	.
CTCF	10664	broad.mit.edu	36	16	66202307	66202307	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006565	exon3	c.C71G	p.T24S	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69876734	69876734	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018348	exon3	c.G591C	p.L197F	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70040593	70040593	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145911	exon6	c.C836G	p.P279R	.	.	.
FBXO31	79791	broad.mit.edu	36	16	85927364	85927364	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024735	exon6	c.G740A	p.R247Q	.	.	.
TUBB3	10381	broad.mit.edu	36	16	88529653	88529653	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006086	exon4	c.G1293T	p.E431D	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21059160	21059160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015461	exon4	c.G2720A	p.R907Q	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29060809	29060809	+	Silent	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198995	exon16	c.A1602G	p.E534E	.	.	.
L3MBTL4	91133	broad.mit.edu	36	18	6253993	6253993	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173464	exon5	c.T172G	p.L58V	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69891882	69891882	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152676	exon10	c.T1099C	p.S367P	.	.	.
CBLB	868	broad.mit.edu	36	3	106903806	106903806	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_170662	exon12	c.G1781A	p.C594Y	.	.	.
TF	7018	broad.mit.edu	36	3	134978711	134978711	+	Silent	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001063	exon16	c.A2001G	p.E667E	.	.	.
TMEM43	79188	broad.mit.edu	36	3	14151379	14151379	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024334	exon8	c.C692G	p.P231R	.	.	.
NCEH1	57552	broad.mit.edu	36	3	173846167	173846167	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146276	exon3	c.A497G	p.Y166C	.	.	.
ZDHHC19	131540	broad.mit.edu	36	3	197420646	197420646	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039617	exon3	c.G406T	p.E136X	.	.	.
CCDC71	64925	broad.mit.edu	36	3	49175718	49175718	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022903	exon2	c.C928T	p.R310W	.	.	.
TLR9	54106	broad.mit.edu	36	3	52232632	52232632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017442	exon2	c.G740A	p.R247H	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72924795	72924795	+	Silent	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018130	exon10	c.C1143G	p.L381L	.	.	.
TAS2R8	50836	broad.mit.edu	36	12	10850480	10850480	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_023918	exon1	c.A367C	p.K123Q	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111101430	111101430	+	Silent	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109662	exon62	c.C10626G	p.G3542G	.	.	.
NOS1	4842	broad.mit.edu	36	12	116212533	116212533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000620	exon4	c.G934A	p.E312K	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121236734	121236734	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098519	exon3	c.G456A	p.E152E	.	.	.
ERP27	121506	broad.mit.edu	36	12	14958965	14958965	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152321	exon7	c.G793C	p.E265Q	.	.	.
LRMP	4033	broad.mit.edu	36	12	25123905	25123905	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006152	exon8	c.A185T	p.N62I	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2575330	2575330	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001129842	exon20	c.A2693G	p.N898S	.	.	.
GXYLT1	283464	broad.mit.edu	36	12	40809866	40809866	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173601	exon2	c.T276A	p.D92E	.	.	.
KRT73	319101	broad.mit.edu	36	12	51298277	51298277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_175068	exon1	c.C299T	p.P100L	.	.	.
VWF	7450	broad.mit.edu	36	12	5998710	5998710	+	Missense_Mutation	SNP	G	A	A	rs61750074	unknown	TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon28	c.C4135T	p.R1379C	.	.	.
CLEC2B	9976	broad.mit.edu	36	12	9906418	9906418	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005127	exon2	c.A20G	p.K7R	.	.	.
HDC	3067	broad.mit.edu	36	15	48342810	48342810	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002112	exon2	c.C118T	p.R40X	.	.	.
NPTN	27020	broad.mit.edu	36	15	71671444	71671444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161364	exon2	c.C179T	p.S60F	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76262178	76262178	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199377	exon6	c.G656C	p.W219S	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82028368	82028368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003027	exon4	c.G271A	p.G91S	.	.	.
MESP2	145873	broad.mit.edu	36	15	88122392	88122392	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039958	exon2	c.C1017T	p.P339P	.	.	.
LASS3	204219	broad.mit.edu	36	15	98813760	98813760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178842	exon12	c.C860T	p.T287M	.	.	.
ANK2	287	broad.mit.edu	36	4	114495057	114495057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001148	exon38	c.C5834T	p.T1945M	.	.	.
ZNF330	27309	broad.mit.edu	36	4	142374495	142374495	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014487	exon10	c.A865G	p.K289E	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185860584	185860584	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024629	exon9	c.G803T	p.R268I	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62531847	62531847	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015236	exon16	c.A2963G	p.Y988C	.	.	.
PPP2R2C	5522	broad.mit.edu	36	4	6381913	6381913	+	Silent	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020416	exon8	c.A1029G	p.E343E	.	.	.
DRD5	1816	broad.mit.edu	36	4	9393054	9393054	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000798	exon1	c.C303T	p.A101A	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96343027	96343027	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003728	exon12	c.C2014A	p.H672N	.	.	.
SLC6A14	11254	broad.mit.edu	36	X	115498314	115498314	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007231	exon9	c.G1264A	p.D422N	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125126672	125126672	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001013628	exon1	c.G917T	p.C306F	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129192281	129192281	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017666	exon9	c.C873G	p.I291M	.	.	.
GPR112	139378	broad.mit.edu	36	X	135254862	135254862	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153834	exon6	c.G1331C	p.G444A	.	.	.
MAGEB18	286514	broad.mit.edu	36	X	26067166	26067166	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173699	exon2	c.G143T	p.R48I	.	.	.
DMD	1756	broad.mit.edu	36	X	32290930	32290930	+	Silent	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004011	exon9	c.T1198C	p.L400L	.	.	.
USP9X	8239	broad.mit.edu	36	X	40892616	40892616	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039590	exon12	c.G1470A	p.L490L	.	.	.
PAGE5	90737	broad.mit.edu	36	X	55263766	55263766	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130467	exon1	c.G9A	p.A3A	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70065179	70065179	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032803	exon4	c.G559C	p.A187P	.	.	.
P2RY10	27334	broad.mit.edu	36	X	78103322	78103322	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198333	exon2	c.T649A	p.C217S	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760166	91760166	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon7	c.C3615G	p.I1205M	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108750549	108750549	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006267	exon20	c.G7122T	p.R2374S	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11716245	11716245	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012344	exon4	c.C1044T	p.Y348Y	.	.	.
POTEE	445582	broad.mit.edu	36	2	131692689	131692689	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083538	exon1	c.G244A	p.A82T	.	.	.
CCNT2	905	broad.mit.edu	36	2	135393036	135393036	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058241	exon1	c.G142A	p.G48R	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165695026	165695026	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006922	exon17	c.C2592T	p.S864S	.	.	.
TTN	7273	broad.mit.edu	36	2	179159550	179159550	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon136	c.G37128C	p.X12376Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179324843	179324843	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133379	exon46	c.T10529G	p.L3510R	.	.	.
NEUROD1	4760	broad.mit.edu	36	2	182251761	182251761	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002500	exon2	c.C72T	p.D24D	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183574965	183574965	+	Silent	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013436	exon6	c.T564A	p.P188P	.	.	.
MARS2	92935	broad.mit.edu	36	2	198280057	198280057	+	Silent	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138395	exon1	c.A1683G	p.P561P	.	.	.
MPP4	58538	broad.mit.edu	36	2	202254470	202254470	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033066	exon9	c.G726T	p.Q242H	.	.	.
ALS2CR8	79800	broad.mit.edu	36	2	203544657	203544657	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001104586	exon11	c.T1282A	p.L428I	.	.	.
WNT6	7475	broad.mit.edu	36	2	219444048	219444048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006522	exon2	c.C136T	p.R46W	.	.	.
RHBDD1	84236	broad.mit.edu	36	2	227487261	227487261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167608	exon8	c.G806A	p.S269N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237914055	237914055	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_057166	exon35	c.C6422T	p.P2141L	.	.	.
CAD	790	broad.mit.edu	36	2	27311643	27311643	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004341	exon24	c.G3813A	p.L1271L	.	.	.
PLB1	151056	broad.mit.edu	36	2	28680337	28680337	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170585	exon39	c.C2742A	p.S914R	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46840744	46840744	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144949	exon2	c.G1571C	p.R524T	.	.	.
USP34	9736	broad.mit.edu	36	2	61337927	61337927	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014709	exon45	c.G5907T	p.Q1969H	.	.	.
VAX2	25806	broad.mit.edu	36	2	71013749	71013749	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012476	exon3	c.C780T	p.A260A	.	.	.
EXOC6B	23233	broad.mit.edu	36	2	72460491	72460491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015189	exon19	c.C1997T	p.T666I	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86108113	86108113	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015425	exon34	c.G5107A	p.G1703R	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96631744	96631744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001115016	exon19	c.C2318T	p.T773I	.	.	.
SSNA1	8636	broad.mit.edu	36	9	139203493	139203493	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003731	exon2	c.C207A	p.N69K	.	.	.
GKAP1	80318	broad.mit.edu	36	9	85593409	85593409	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025211	exon5	c.C365A	p.T122K	.	.	.
C13orf23	80209	broad.mit.edu	36	13	38485547	38485547	+	Silent	SNP	A	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170719	exon10	c.T1776C	p.P592P	.	.	.
COG6	57511	broad.mit.edu	36	13	39195544	39195544	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145079	exon16	c.C1659G	p.I553M	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59482790	59482790	+	Silent	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042517	exon8	c.A786G	p.R262R	.	.	.
PCDH9	5101	broad.mit.edu	36	13	65776817	65776817	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020403	exon4	c.A3583G	p.T1195A	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74771658	74771658	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014832	exon17	c.C2965G	p.L989V	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87128383	87128383	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015567	exon2	c.A2739T	p.E913D	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98313281	98313281	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130050	exon32	c.C3572T	p.A1191V	.	.	.
GPR18	2841	broad.mit.edu	36	13	98706104	98706104	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005292	exon3	c.T24A	p.D8E	.	.	.
ACTR1A	10121	broad.mit.edu	36	10	104233980	104233980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005736	exon6	c.G584A	p.R195H	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117051465	117051465	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207303	exon17	c.C2740T	p.R914X	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12171196	12171196	+	Missense_Mutation	SNP	G	A	A	rs17849603	unknown	TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018706	exon5	c.G923A	p.R308H	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128714632	128714632	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001380	exon16	c.C1515T	p.N505N	.	.	.
FAM196A	642938	broad.mit.edu	36	10	128863754	128863754	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001039762	exon4	c.C896T	p.A299V	.	.	.
NEBL	10529	broad.mit.edu	36	10	21114822	21114822	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006393	exon28	c.G2905A	p.D969N	.	.	.
KLF6	1316	broad.mit.edu	36	10	3814117	3814117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160125	exon2	c.G392A	p.G131D	.	.	.
BMS1	9790	broad.mit.edu	36	10	42645744	42645744	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014753	exon22	c.T3486G	p.N1162K	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91488159	91488159	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016195	exon20	c.T3461C	p.I1154T	.	.	.
KIF11	3832	broad.mit.edu	36	10	94358833	94358833	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004523	exon5	c.C464T	p.S155L	.	.	.
GOLGA7B	401647	broad.mit.edu	36	10	99613786	99613786	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001010917	exon3	c.C248T	p.T83M	.	.	.
APC	324	broad.mit.edu	36	5	112203000	112203000	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.T3756A	p.C1252X	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115326463	115326463	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173800	exon1	c.C250T	p.P84S	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236554	140236554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031864	exon1	c.C1313T	p.T438M	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700280	140700280	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032009	exon1	c.T1558A	p.F520I	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759502	140759502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032099	exon1	c.G1624A	p.V542M	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140846095	140846095	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032406	exon1	c.G1171A	p.D391N	.	.	.
MYO10	4651	broad.mit.edu	36	5	16756107	16756107	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012334	exon23	c.G2437C	p.A813P	.	.	.
MSX2	4488	broad.mit.edu	36	5	174084307	174084307	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002449	exon1	c.C39T	p.P13P	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179695435	179695435	+	Silent	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005110	exon4	c.C339T	p.N113N	.	.	.
CDH18	1016	broad.mit.edu	36	5	19607582	19607582	+	Silent	SNP	G	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon8	c.C1116A	p.I372I	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	235162	235162	+	Silent	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052909	exon18	c.C3540T	p.H1180H	.	.	.
SDHA	6389	broad.mit.edu	36	5	281421	281421	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004168	exon6	c.G743C	p.R248T	.	.	.
ZFR	51663	broad.mit.edu	36	5	32431029	32431029	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016107	exon11	c.G1972A	p.E658K	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5199494	5199494	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_139056	exon3	c.G427A	p.D143N	.	.	.
