Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483000													6	337					0	0	0.021553	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	C	C	rs60558629		TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:12887612T>C	uc001auk.2	-	3	441	c.245A>G	c.(244-246)CAT>CGT	p.H82R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	82											0						GAAGCACCCATGGGCCATAGC	0.488000													7	356					0	0	0.029380	0	0
PTPN22	26191	broad.mit.edu	37	1	114380371	114380371	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:114380371G>A	uc001eds.2	-	13	1781	c.1651C>T	c.(1651-1653)CTT>TTT	p.L551F	PTPN22_uc009wgq.2_Missense_Mutation_p.L496F|PTPN22_uc010owo.1_Missense_Mutation_p.L307F|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.L551F|PTPN22_uc009wgs.2_Missense_Mutation_p.L424F|PTPN22_uc001edu.2_Missense_Mutation_p.L551F	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	551					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGTAAATCAAGAGACATCTTA	0.383000													15	28					0	0	0.024245	0	0
PEX19	5824	broad.mit.edu	37	1	160253385	160253385	+	Missense_Mutation	SNP	G	A	A	rs144256391	byFrequency	TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:160253385G>A	uc001fvs.2	-	2	142	c.115C>T	c.(115-117)CCT>TCT	p.P39S	DCAF8_uc010pjc.1_Intron|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_Intron	NM_002857	NP_002848	P40855	PEX19_HUMAN	peroxisomal biogenesis factor 19 isoform a	39	Necessary for PEX19 function on peroxisome biogenesis.|Docking to the peroxisome membrane and binding to PEX3.				peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport	brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane	protein binding|protein N-terminus binding				0	all_cancers(52;1.27e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTGGTAGAAGGGGGTGCTGGG	0.547000													30	37					0	0	0.037714	0	0
ASPM	259266	broad.mit.edu	37	1	197115395	197115396	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:197115395_197115396CC>AA	uc001gtu.2	-	1	429_430	c.172_173GG>TT	c.(172-174)GGA>TTA	p.G58L	ASPM_uc001gtv.2_Missense_Mutation_p.G58L|ASPM_uc001gtw.3_5'UTR	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	58					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CCGTGAGGCTCCCAGGAGAACG	0.525000													55	84					0	0	0.004672	0	0
TDRD1	56165	broad.mit.edu	37	10	115980454	115980454	+	Silent	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr10:115980454C>T	uc001lbg.1	+	19	2775	c.2622C>T	c.(2620-2622)ACC>ACT	p.T874T	TDRD1_uc001lbf.2_Silent_p.T751T|TDRD1_uc001lbh.1_Silent_p.T865T|TDRD1_uc001lbi.1_Silent_p.T865T|TDRD1_uc010qsc.1_Silent_p.T478T|TDRD1_uc001lbj.2_Silent_p.T583T	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	874					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TTGAACTCACCGATCTCTCCA	0.393000													9	25					0	0	0.058154	0	0
PC	5091	broad.mit.edu	37	11	66616543	66616543	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr11:66616543C>G	uc001ojn.1	-	21	3413	c.3364G>C	c.(3364-3366)GAC>CAC	p.D1122H	PC_uc001ojo.1_Missense_Mutation_p.D1122H|PC_uc001ojp.1_Missense_Mutation_p.D1122H|PC_uc001ojm.1_Missense_Mutation_p.D111H	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	1122	Biotinyl-binding.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	ACTTTGATGTCTATCACCTTC	0.612000													179	74					0	0	0.048971	0	0
KIAA1033	23325	broad.mit.edu	37	12	105519825	105519825	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr12:105519825C>A	uc001tld.2	+	11	917	c.830C>A	c.(829-831)TCT>TAT	p.S277Y	KIAA1033_uc010swr.1_Missense_Mutation_p.S277Y|KIAA1033_uc010sws.1_Missense_Mutation_p.S89Y	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	277					endosome transport	WASH complex		p.S277S(1)		kidney(1)|central_nervous_system(1)	2						GGAGGAGTATCTGTGTCAAAA	0.328000													7	17					3.09899e-07	3.64586e-07	0.047766	1	0
PARP4	143	broad.mit.edu	37	13	25077906	25077906	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr13:25077906C>A	uc001upl.2	-	2	115	c.9G>T	c.(7-9)ATG>ATT	p.M3I	PARP4_uc010tdc.1_Missense_Mutation_p.M3I	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	3	BRCT.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CAAAGATTCCCATCACCATCC	0.353000													17	24					5.35267e-07	6.20599e-07	0.043863	1	0
HERC2	8924	broad.mit.edu	37	15	28482110	28482110	+	Silent	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr15:28482110G>A	uc001zbj.2	-	26	4108	c.4002C>T	c.(4000-4002)GCC>GCT	p.A1334A		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1334					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTTTCTTACTGGCACATTCAA	0.388000													15	19					0	0	0.038395	0	0
FBN1	2200	broad.mit.edu	37	15	48704920	48704920	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr15:48704920C>T	uc001zwx.1	-	65	8400	c.8072G>A	c.(8071-8073)GGC>GAC	p.G2691D	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2691					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TCGGCCCATGCCCATTCCAGA	0.502000													4	175					0	0	0.014758	0	0
GLIS2	84662	broad.mit.edu	37	16	4386949	4386949	+	Silent	SNP	A	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr16:4386949A>C	uc002cwc.1	+	6	1056	c.999A>C	c.(997-999)CCA>CCC	p.P333P		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	333					cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						AGCTGCGCCCACCCCCCAAGC	0.677000													5	10					0	0	0.038147	0	0
ITGAD	3681	broad.mit.edu	37	16	31425790	31425790	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr16:31425790T>C	uc002ebv.1	+	17	2064	c.2015T>C	c.(2014-2016)GTC>GCC	p.V672A	ITGAD_uc010cap.1_Missense_Mutation_p.V673A	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	672	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CAAAGCTCTGTCAGGTTTGAT	0.423000													97	93					0	0	0.048971	0	0
BRD7	29117	broad.mit.edu	37	16	50357602	50357602	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr16:50357602C>A	uc002egf.1	-	13	1406	c.1339G>T	c.(1339-1341)GAG>TAG	p.E447*	BRD7_uc002ege.1_Nonsense_Mutation_p.E447*	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	447					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				GCCAAAAACTCATGGATGCTG	0.458000													22	11					1.96292e-10	2.3793e-10	0.055883	1	0
NUP88	4927	broad.mit.edu	37	17	5290080	5290080	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr17:5290080T>A	uc002gbo.1	-	16	2136	c.2110A>T	c.(2110-2112)ATT>TTT	p.I704F	NUP88_uc002gbn.2_5'Flank|NUP88_uc010vsx.1_Missense_Mutation_p.I720F	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa	704					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						CTGAGAATAATGGTGGGTTTT	0.363000													39	60					0	0	0.111260	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	T	T	rs76270529	by1000genomes	TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr17:39254054A>T	uc010wfo.1	-	1	322	c.283T>A	c.(283-285)TGC>AGC	p.C95S		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	95	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|15.					keratin filament					0						ctggagatgcagcagcTAGGG	0.318000													5	40					0	0	0.021553	0	0
PTRF	284119	broad.mit.edu	37	17	40574746	40574746	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr17:40574746C>T	uc002hzo.2	-	1	529	c.370G>A	c.(370-372)GTG>ATG	p.V124M	PTRF_uc010wgi.1_Missense_Mutation_p.V106M	NM_012232	NP_036364	Q6NZI2	PTRF_HUMAN	polymerase I and transcript release factor	124					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription initiation from RNA polymerase I promoter	caveola|cytosol|endoplasmic reticulum|microsome|mitochondrion|nucleoplasm	protein binding|rRNA primary transcript binding			breast(1)	1		all_cancers(22;0.00146)|Breast(137;0.00116)|all_epithelial(22;0.0134)		BRCA - Breast invasive adenocarcinoma(366;0.193)		CTGCCGCGCACGGTCTTCACG	0.632000													9	10					0	0	0.058154	0	0
POTEC	388468	broad.mit.edu	37	18	14543019	14543019	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr18:14543019T>C	uc010dln.2	-	1	581	c.127A>G	c.(127-129)ATG>GTG	p.M43V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	43										skin(3)	3						GAAGTGCCCATGTTGCTCTTG	0.587000													6	172					0	0	0.029380	0	0
MIB1	57534	broad.mit.edu	37	18	19444569	19444569	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr18:19444569G>C	uc002ktq.2	+	21	2963	c.2963G>C	c.(2962-2964)CGC>CCC	p.R988P	MIB1_uc002ktp.2_Missense_Mutation_p.R627P	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	988	RING-type 3.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TGTGGAGACCGCATGAGTGAA	0.403000													11	91					0	0	0.069234	0	0
ASXL3	80816	broad.mit.edu	37	18	31324386	31324386	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr18:31324386C>G	uc010dmg.1	+	12	4629	c.4574C>G	c.(4573-4575)CCT>CGT	p.P1525R	ASXL3_uc002kxq.2_Missense_Mutation_p.P1232R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1525					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATTAGCAGGCCTGAGCCAGTT	0.542000											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	42					0	0	0.029380	0	0
RPS16	6217	broad.mit.edu	37	19	39924009	39924009	+	Silent	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr19:39924009A>G	uc002olk.2	-	5	428	c.345T>C	c.(343-345)TAT>TAC	p.Y115Y	RPS16_uc002oll.2_Silent_p.Y98Y|RPS16_uc002olm.2_Missense_Mutation_p.M147T	NM_001020	NP_001011	P62249	RS16_HUMAN	ribosomal protein S16	115					endocrine pancreas development|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome			skin(1)	1	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;4.14e-26)|all cancers(26;2.68e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGGTCCGGTCATACTGGATGA	0.537000													17	60					0	0	0.038395	0	0
CIC	23152	broad.mit.edu	37	19	42796916	42796916	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr19:42796916G>A	uc002otf.1	+	14	3414	c.3374G>A	c.(3373-3375)AGC>AAC	p.S1125N		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1125	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GTGGCCACCAGCACAACCCCA	0.667000			T	DUX4	soft tissue sarcoma								4	70					0	0	0.009096	0	0
CEACAM19	56971	broad.mit.edu	37	19	45176143	45176143	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr19:45176143C>T	uc002ozo.3	+	2	811	c.331C>T	c.(331-333)CGC>TGC	p.R111C	CEACAM19_uc002ozp.3_Missense_Mutation_p.R111C	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	111	Extracellular (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				GCTGCTGCGCCGCGCCCAGCC	0.557000													157	355					0	0	0.048971	0	0
FPR3	2359	broad.mit.edu	37	19	52327145	52327145	+	Silent	SNP	C	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr19:52327145C>A	uc002pxt.1	+	2	328	c.144C>A	c.(142-144)ATC>ATA	p.I48I		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	48	Helical; Name=1; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						GGCTTGTGATCTGGGTGGCTG	0.552000													27	53					1.7881e-09	2.13505e-09	0.037714	1	0
ITGAV	3685	broad.mit.edu	37	2	187506113	187506113	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr2:187506113T>G	uc002upq.2	+	12	1233	c.957T>G	c.(955-957)GAT>GAG	p.D319E	ITGAV_uc010frs.2_Missense_Mutation_p.D283E|ITGAV_uc010zfv.1_Missense_Mutation_p.D273E	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	319	Potential.|FG-GAP 5.|Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		GTTCTTCTAGTTATGCAGATG	0.428000													21	67					0	0	0.049695	0	0
PLCB1	23236	broad.mit.edu	37	20	8665706	8665706	+	Silent	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr20:8665706G>A	uc002wnb.2	+	10	993	c.990G>A	c.(988-990)TCG>TCA	p.S330S	PLCB1_uc010zrb.1_Silent_p.S229S|PLCB1_uc002wna.2_Silent_p.S330S|PLCB1_uc002wnc.1_Silent_p.S229S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	330	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TTAATTCCTCGCACAACACCT	0.418000													50	65					0	0	0.048971	0	0
FRG1B	284802	broad.mit.edu	37	20	29625955	29625955	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr20:29625955A>T	uc010ztl.1	+	2	141	c.109A>T	c.(109-111)AGA>TGA	p.R37*	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						AATTGGACCAAGAGAACAATG	0.338000													5	80					0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	21	9769012	9769012	+	RNA	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr21:9769012C>T	uc011abu.1	+	10		c.987C>T								Homo sapiens, clone IMAGE:4720764, mRNA.																		ACAAACGCTGCCCTTGAAAAG	0.338000													19	12					0	0	0.069456	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													3	15					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	22	18844888	18844888	+	RNA	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr22:18844888A>G	uc002zoe.2	+	4		c.2142A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCTCACGGAAATACAGCTTCA	0.587000													7	98					0	0	0.029380	0	0
CNTN4	152330	broad.mit.edu	37	3	3076327	3076327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr3:3076327C>T	uc003bpc.2	+	16	2016	c.1795C>T	c.(1795-1797)CCC>TCC	p.P599S	CNTN4_uc003bpb.1_Missense_Mutation_p.P270S|CNTN4_uc003bpd.1_Missense_Mutation_p.P599S|CNTN4_uc003bpe.2_Missense_Mutation_p.P271S|CNTN4_uc003bpf.2_Missense_Mutation_p.P270S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	599	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCCTCCAGGTCCCCCAGAGGC	0.527000													11	40					0	0	0.093190	0	0
FRMD4B	23150	broad.mit.edu	37	3	69221132	69221132	+	Silent	SNP	T	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr3:69221132T>C	uc003dnv.2	-	23	3275	c.2985A>G	c.(2983-2985)AGA>AGG	p.R995R	FRMD4B_uc003dnw.2_RNA|FRMD4B_uc003dnu.2_Silent_p.R647R|FRMD4B_uc011bga.1_Silent_p.R839R	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	995						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		CTGTGTATTGTCTATTAAAGA	0.388000													70	64					0	0	0.048971	0	0
RGS12	6002	broad.mit.edu	37	4	3319098	3319098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr4:3319098C>T	uc003ggw.2	+	2	2105	c.1201C>T	c.(1201-1203)CGG>TGG	p.R401W	RGS12_uc003ggu.2_Missense_Mutation_p.R401W|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.R401W|RGS12_uc003ggx.1_Missense_Mutation_p.R401W	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	401						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TGAGGGCATGCGGGCCCGCGC	0.607000													4	76					0	0	0.014758	0	0
DRD5	1816	broad.mit.edu	37	4	9784929	9784929	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr4:9784929G>C	uc003gmb.3	+	1	1672	c.1276G>C	c.(1276-1278)GAC>CAC	p.D426H		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	426	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CCGGGAGGTGGACAACGACGA	0.567000													10	64					0	0	0.058154	0	0
FAT1	2195	broad.mit.edu	37	4	187525580	187525580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr4:187525580G>A	uc003izf.2	-	18	10687	c.10499C>T	c.(10498-10500)TCA>TTA	p.S3500L		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3500	Extracellular (Potential).|Cadherin 32.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GATGGCAGATGATGTCAGGAG	0.433000										HNSCC(5;0.00058)			5	55					0	0	0.021553	0	0
IL7R	3575	broad.mit.edu	37	5	35875627	35875627	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr5:35875627G>A	uc003jjs.2	+	7	903	c.814G>A	c.(814-816)GTA>ATA	p.V272I	IL7R_uc011coo.1_Silent_p.S240S|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	272	Box 1 motif.|Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TAAGCCTATCGTATGGCCCAG	0.398000													8	25					0	0	0.058154	0	0
C5orf34	375444	broad.mit.edu	37	5	43488040	43488040	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr5:43488040G>C	uc003jnz.1	-	13	2008	c.1691C>G	c.(1690-1692)TCT>TGT	p.S564C		NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	564										breast(1)	1	Lung NSC(6;2.07e-05)					TTCAAGTTCAGAAGCAACAGA	0.313000													2	4					0	0	0.004672	0	0
C5orf34	375444	broad.mit.edu	37	5	43503827	43503827	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr5:43503827G>T	uc003jnz.1	-	6	1285	c.968C>A	c.(967-969)TCT>TAT	p.S323Y		NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	323										breast(1)	1	Lung NSC(6;2.07e-05)					ATATTCATCAGATTGTCTCTG	0.353000													52	49					2.73381e-35	3.36469e-35	0.048971	1	0
HNRNPH1	3187	broad.mit.edu	37	5	179050094	179050094	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr5:179050094T>G	uc003mkf.3	-	2	147	c.41A>C	c.(40-42)AAG>ACG	p.K14T	HNRNPH1_uc003mkg.3_5'UTR|HNRNPH1_uc003mke.3_Missense_Mutation_p.K14T|HNRNPH1_uc003mkh.3_Missense_Mutation_p.K14T	NM_005520	NP_005511	P31943	HNRH1_HUMAN	heterogeneous nuclear ribonucleoprotein H1	14	RRM 1.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding				0						GCCCCGGACCTTCACCACGAA	0.542000													13	29					0	0	0.033300	0	0
COX7A2	1347	broad.mit.edu	37	6	75950901	75950901	+	Silent	SNP	T	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr6:75950901T>C	uc003phv.1	-	2	174	c.99A>G	c.(97-99)AAA>AAG	p.K33K		NM_001865	NP_001856	P14406	CX7A2_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2	33						mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0						CCTGGAACAGTTTTTGCTTCT	0.343000													4	88					0	0	0.021553	0	0
ZNF277	11179	broad.mit.edu	37	7	111958309	111958309	+	Missense_Mutation	SNP	G	A	A	rs143437932	byFrequency	TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr7:111958309G>A	uc003vge.2	+	5	667	c.538G>A	c.(538-540)GAA>AAA	p.E180K	ZNF277_uc003vgd.2_Missense_Mutation_p.E180K|ZNF277_uc003vgf.2_Missense_Mutation_p.E102K|ZNF277_uc003vgg.2_Missense_Mutation_p.E5K	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	180						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						GTTTTGCAATGAAGAATTCCT	0.333000													18	26					0	0	0.038395	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				30	43					0	0	0.041601	0	0
TEX15	56154	broad.mit.edu	37	8	30703556	30703556	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr8:30703556A>G	uc003xil.2	-	1	2978	c.2978T>C	c.(2977-2979)CTT>CCT	p.L993P		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	993										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTTTCTGGAAAGACATTTGCT	0.338000													37	92					0	0	0.069456	0	0
KCNB2	9312	broad.mit.edu	37	8	73849115	73849115	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr8:73849115G>A	uc003xzb.2	+	3	2113	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	509	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAAGTCTTTCGAGAATAAGTA	0.542000													54	70					0	0	0.048971	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110439320	110439320	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr8:110439320A>G	uc003yne.2	+	25	3039	c.2935A>G	c.(2935-2937)ACC>GCC	p.T979A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	979	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACGAGAGGGAACCTGTGCTGG	0.522000										HNSCC(38;0.096)			32	45					0	0	0.045705	0	0
SLC44A1	23446	broad.mit.edu	37	9	108120631	108120631	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr9:108120631C>G	uc004bcn.2	+	7	898	c.677C>G	c.(676-678)TCC>TGC	p.S226C	SLC44A1_uc010mtk.1_Missense_Mutation_p.S226C|SLC44A1_uc004bco.1_Missense_Mutation_p.S18C	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	226	Helical; (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	GCAGTTCTATCCATGATTTTG	0.338000													35	58					0	0	0.069456	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070969	141070969	+	Silent	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr9:141070969A>G	uc004com.2	+	4	633	c.372A>G	c.(370-372)GCA>GCG	p.A124A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TAGAAAACGCAGATGAGACCT	0.517000													4	49					0	0	0.009096	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													4	56					0	0	0.009096	0	0
STARD8	9754	broad.mit.edu	37	X	67940175	67940175	+	Silent	SNP	A	C	C			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chrX:67940175A>C	uc004dxa.2	+	7	2091	c.1719A>C	c.(1717-1719)CCA>CCC	p.P573P	STARD8_uc004dxb.2_Silent_p.P653P|STARD8_uc004dxc.3_Silent_p.P573P	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	573	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						TTGGGGTGCCACCCCTCATCC	0.577000													5	17					0	0	0.014758	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218329	130218329	+	Silent	SNP	G	A	A			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chrX:130218329G>A	uc004evz.2	+	5	1041	c.696G>A	c.(694-696)GCG>GCA	p.A232A	ARHGAP36_uc004ewa.2_Silent_p.A220A|ARHGAP36_uc004ewb.2_Silent_p.A201A|ARHGAP36_uc004ewc.2_Silent_p.A96A	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	232	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						ATCCGATTGCGAAACAAATCC	0.468000													24	7					0	0	0.076483	0	0
POGZ	23126	broad.mit.edu	37	1	151381178	151381179	+	Frame_Shift_Ins	INS	-	TGGT	TGGT			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr1:151381178_151381179insTGGT	uc001eyd.1	-	13	2358_2359	c.2052_2053insACCA	c.(2050-2055)CCAGGCfs	p.P684fs	POGZ_uc001eye.1_Frame_Shift_Ins_p.P631fs|POGZ_uc010pdb.1_Frame_Shift_Ins_p.P675fs|POGZ_uc001eyf.1_Frame_Shift_Ins_p.P640fs|POGZ_uc010pdc.1_Frame_Shift_Ins_p.P622fs|POGZ_uc009wmv.1_Frame_Shift_Ins_p.P589fs|POGZ_uc010pdd.1_Frame_Shift_Ins_p.P175fs	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	684_685					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACCTTGGTGCCTGGTTTCAAGC	0.450													138	254	---	---	---	---					
LILRP2	79166	broad.mit.edu	37	19	55221804	55221805	+	RNA	INS	-	AC	AC	rs45583536		TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr19:55221804_55221805insAC	uc002qgs.1	+	1		c.2204_2205insAC			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CAGAGACAGAGACTGAGGGTCC	0.614													5	4	---	---	---	---					
OGDH	4967	broad.mit.edu	37	7	44684936	44684936	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q9-06A-11D-A19A-08	TCGA-D3-A1Q9-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f968b693-f462-4779-8784-75e12a72953d	1606c5e3-e3d1-4618-8690-7f6e1e36a54b	g.chr7:44684936delT	uc003tln.2	+	3	342	c.233delT	c.(232-234)ATTfs	p.I78fs	OGDH_uc003tlm.2_Frame_Shift_Del_p.I78fs|OGDH_uc011kbx.1_Frame_Shift_Del_p.I78fs|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Frame_Shift_Del_p.I78fs|OGDH_uc011kbz.1_5'UTR|OGDH_uc003tlo.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	78					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	TCATGGGACATTTTTTTTCGC	0.577													7	212	---	---	---	---					
