Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBE2J2	118424	broad.mit.edu	37	1	1203265	1203266	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:1203265_1203266GG>AA	uc001adn.2	-	2	417_418	c.107_108CC>TT	c.(106-108)CCC>CTT	p.P36L	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Missense_Mutation_p.P36L|UBE2J2_uc001adp.2_Missense_Mutation_p.P36L|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	36	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		TCGAAGGGAGGGGCTCGGCACA	0.629000													82	170					0	0	6.4e-05	0	0
PRKCZ	5590	broad.mit.edu	37	1	2103786	2103786	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:2103786C>T	uc001aiq.2	+	13	1405	c.1244C>T	c.(1243-1245)CCG>CTG	p.P415L	PRKCZ_uc001air.2_Missense_Mutation_p.P232L|PRKCZ_uc010nyw.1_Missense_Mutation_p.P311L|PRKCZ_uc001ais.2_Missense_Mutation_p.P232L|PRKCZ_uc009vla.2_Missense_Mutation_p.P239L|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc001ait.2_Missense_Mutation_p.P263L	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	415	Protein kinase.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		TGCGGAACCCCGAATTACATC	0.637000													8	14					0	0	3.86212e-05	0	0
MTOR	2475	broad.mit.edu	37	1	11199666	11199666	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:11199666G>A	uc001asd.2	-	35	5043	c.4922C>T	c.(4921-4923)TCC>TTC	p.S1641F		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1641	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GACCACAAGGGACCGCACCAT	0.498000													30	86					0	0	0.000132358	0	0
LOC440563	440563	broad.mit.edu	37	1	13183318	13183318	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:13183318C>T	uc010obg.1	-	1	650	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	185						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GGGTCAACTCCTGCTTAATGG	0.443000													29	252					0	0	0.000279167	0	0
MST1P9	11223	broad.mit.edu	37	1	17084327	17084327	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:17084327G>A	uc010ock.1	-	13	1690	c.1690C>T	c.(1690-1692)CTG>TTG	p.L564L	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.L164L	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						AGGCAGATCAGGGCCACACGC	0.577000													10	209					0	0	0.00010058	0	0
EXTL1	2134	broad.mit.edu	37	1	26360198	26360198	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:26360198C>T	uc001blf.2	+	9	2397	c.1530C>T	c.(1528-1530)GCC>GCT	p.A510A		NM_004455	NP_004446	Q92935	EXTL1_HUMAN	exostoses-like 1	510	Lumenal (Potential).				skeletal system development	integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|protein binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00594)|READ - Rectum adenocarcinoma(331;0.0649)		TGGACTTTGCCTTTCTGGTGT	0.597000													70	144					0	0	0.000147903	0	0
ZNF683	257101	broad.mit.edu	37	1	26691141	26691141	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:26691141G>A	uc001bmg.1	-	4	1014	c.896C>T	c.(895-897)CCA>CTA	p.P299L	ZNF683_uc001bmh.1_Missense_Mutation_p.P299L|ZNF683_uc009vsj.1_Missense_Mutation_p.P299L	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	299					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GGAACTCAATGGGACCCGCTT	0.587000													47	124					0	0	0.000147903	0	0
SFRS4	6429	broad.mit.edu	37	1	29476621	29476622	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:29476621_29476622CG>AT	uc001bro.2	-	5	1034_1035	c.661_662CG>AT	c.(661-663)CGG>ATG	p.R221M	SFRS4_uc010ofy.1_Intron	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	221	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		ATACCTGGACCGAGATCTACTC	0.411000													13	295					0	0	6.4e-05	0	0
IQCC	55721	broad.mit.edu	37	1	32673199	32673199	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:32673199G>A	uc001bum.2	+	5	964	c.917G>A	c.(916-918)AGA>AAA	p.R306K	IQCC_uc009vua.2_Missense_Mutation_p.R386K|IQCC_uc010ogz.1_Missense_Mutation_p.R206K|DCDC2B_uc001bun.2_5'Flank	NM_018134	NP_060604	Q4KMZ1	IQCC_HUMAN	IQ motif containing C isoform 2	306										ovary(4)	4		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GACGATGGAAGACAGACCTTT	0.552000													7	52					0	0	8.12818e-05	0	0
WDR65	149465	broad.mit.edu	37	1	43664180	43664180	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:43664180G>A	uc001cip.1	+	8	1412	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.E420K|WDR65_uc001ciq.1_Missense_Mutation_p.E431K	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	431	WD 6.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGAATACCAAGAAGAGGCATA	0.393000													11	38					0	0	0.000151284	0	0
DPH2	1802	broad.mit.edu	37	1	44436352	44436352	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:44436352T>C	uc001ckz.2	+	2	427	c.232T>C	c.(232-234)TTC>CTC	p.F78L	DPH2_uc001cla.2_Missense_Mutation_p.F78L|DPH2_uc010okk.1_Silent_p.C17C|DPH2_uc001clb.2_Missense_Mutation_p.F2L	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	78					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				GTCAAAGATGTTCATTCTGGG	0.552000													89	217					0	0	0.000147903	0	0
PCSK9	255738	broad.mit.edu	37	1	55518054	55518054	+	Silent	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:55518054C>A	uc001cyf.1	+	4	918	c.627C>A	c.(625-627)CCC>CCA	p.P209P	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	209	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						AGAATGTGCCCGAGGAGGACG	0.622000													7	348					0.000157383	0.00244097	0.000157383	1	0
PTGFR	5737	broad.mit.edu	37	1	78958726	78958726	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:78958726C>T	uc001din.2	+	2	564	c.298C>T	c.(298-300)CGC>TGC	p.R100C	PTGFR_uc001dim.2_Missense_Mutation_p.R100C	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	100	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	AGAATGGATCCGCTTTGACCA	0.443000													54	122					0	0	0.000147903	0	0
TMEM56	148534	broad.mit.edu	37	1	95616880	95616880	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:95616880G>A	uc001drb.2	+	5	596	c.305_splice	c.e5-1	p.D102_splice	RWDD3_uc001drd.3_Splice_Site_p.D102_splice|TMEM56_uc001drc.2_Splice_Site_p.D102_splice	NM_152487	NP_689700	Q96MV1	TMM56_HUMAN	transmembrane protein 56							integral to membrane					0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.133)		CTTTCTTACAGATTTGTCCAT	0.254000													7	13					0	0	0.000157383	0	0
AMY2B	280	broad.mit.edu	37	1	104114369	104114369	+	Missense_Mutation	SNP	C	T	T	rs141409903		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:104114369C>T	uc001duq.2	+	3	761	c.145C>T	c.(145-147)CCC>TCC	p.P49S	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.P49S	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	49					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		ATATTTAGCTCCCAAGGGATT	0.403000													14	107					0	0	9.22233e-05	0	0
C1orf59	113802	broad.mit.edu	37	1	109191350	109191350	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:109191350G>A	uc001dvt.3	-	8	1258	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	C1orf59_uc001dvu.3_Silent_p.F340F|C1orf59_uc009wer.2_3'UTR	NM_001102592	NP_001096062	Q5T8I9	HENMT_HUMAN	hypothetical protein LOC113802	340					gene silencing by RNA|piRNA metabolic process	P granule	metal ion binding|O-methyltransferase activity|RNA binding|RNA methyltransferase activity				0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0152)|Lung(183;0.0895)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.163)		GCAGAGGTACGAAAAATTTAT	0.473000													9	71					0	0	3.86212e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109538320	109538321	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:109538320_109538321GG>TT	uc001dwj.2	-	8	1948_1949	c.1572_1573CC>AA	c.(1570-1575)CCCCAA>CCAAAA	p.Q525K	WDR47_uc001dwl.2_Missense_Mutation_p.Q533K|WDR47_uc001dwi.2_Missense_Mutation_p.Q526K|WDR47_uc001dwk.2_Missense_Mutation_p.Q497K|WDR47_uc010ovf.1_Missense_Mutation_p.Q452K	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	525										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		CTAGAGTCTTGGGGTGGTGTAG	0.416000													20	680					0	0	6.4e-05	0	0
TMEM167B	56900	broad.mit.edu	37	1	109635526	109635527	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:109635526_109635527GG>TT	uc001dwn.2	+	2	117_118	c.25_26GG>TT	c.(25-27)GGG>TTG	p.G9L	TMEM167B_uc009weu.2_Intron	NM_020141	NP_064526	Q9NRX6	KISHB_HUMAN	transmembrane protein 167B precursor	9						Golgi membrane|integral to membrane					0						CTCCTTGGATGGGATTCTGGTG	0.446000													18	789					0	0	6.4e-05	0	0
SYPL2	284612	broad.mit.edu	37	1	110018245	110018246	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:110018245_110018246GG>TT	uc001dxp.2	+	3	538_539	c.172_173GG>TT	c.(172-174)GGG>TTG	p.G58L	SYPL2_uc001dxo.2_Missense_Mutation_p.G58L|SYPL2_uc010ovk.1_Missense_Mutation_p.G58L|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	58	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		CTCCTACAGCGGGGAGACAGGA	0.530000													10	507					0	0	6.4e-05	0	0
NRAS	4893	broad.mit.edu	37	1	115258748	115258748	+	Missense_Mutation	SNP	C	G	G	rs121913250		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:115258748C>G	uc009wgu.2	-	2	288	c.34G>C	c.(34-36)GGT>CGT	p.G12R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	12	GTP.		G -> C (in leukemia).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.G12D(333)|p.G12S(118)|p.G12C(71)|p.G12V(54)|p.G12A(36)|p.G12R(16)|p.G12G(4)|p.G12N(1)|p.G12T(1)|p.G12P(1)|p.G12Y(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAACACCACCTGCTCCAACC	0.493000	G12C(P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12S(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			32	103					0	0	0.000132358	0	0
SYCP1	6847	broad.mit.edu	37	1	115401176	115401177	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:115401176_115401177GG>AA	uc001efr.2	+	6	509_510	c.300_301GG>AA	c.(298-303)GAGGGA>GAAAGA	p.G101R	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.G101R|SYCP1_uc009wgw.2_Missense_Mutation_p.G101R	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	101					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGAATTCAGAGGGATTGAGCAG	0.297000													8	108					0	0	6.4e-05	0	0
TSPAN2	10100	broad.mit.edu	37	1	115600217	115600217	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:115600217C>G	uc001eft.2	-	6	519	c.457G>C	c.(457-459)GGA>CGA	p.G153R		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	153	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		CTTTCTTTTCCACAGCACTGA	0.507000													5	255					0	0	8.12818e-05	0	0
TTF2	8458	broad.mit.edu	37	1	117618345	117618345	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:117618345C>G	uc001egy.2	+	5	1159	c.1139C>G	c.(1138-1140)ACG>AGG	p.T380R	TTF2_uc001egx.1_Missense_Mutation_p.T380R	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	380					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		GACTTAGAGACGAAGGAAAAC	0.517000													7	37					0	0	8.12818e-05	0	0
WDR3	10885	broad.mit.edu	37	1	118499811	118499811	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:118499811C>T	uc010oxe.1	+	25	2640	c.2574C>T	c.(2572-2574)TTC>TTT	p.F858F	WDR3_uc001ehi.2_Intron|SPAG17_uc001ehk.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	858						nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		GCCTCTTCTTCCTCCTTAGGT	0.413000													10	66					0	0	0.000151284	0	0
WARS2	10352	broad.mit.edu	37	1	119575597	119575597	+	Silent	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:119575597T>C	uc001ehn.2	-	6	1048	c.1020A>G	c.(1018-1020)GCA>GCG	p.A340A	WARS2_uc010oxf.1_Silent_p.A246A|WARS2_uc001ehm.2_3'UTR|WARS2_uc010oxg.1_Silent_p.A283A|WARS2_uc010oxh.1_3'UTR	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	340					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	CTTTGGCTTTTGCTGATCCAA	0.408000													36	107					0	0	0.000109025	0	0
PHGDH	26227	broad.mit.edu	37	1	120266009	120266010	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:120266009_120266010GG>TT	uc001ehz.2	+	3	528_529	c.301_302GG>TT	c.(301-303)GGG>TTG	p.G101L	PHGDH_uc009whl.2_5'UTR|PHGDH_uc009whm.2_5'UTR|PHGDH_uc001eia.2_Missense_Mutation_p.G101L|PHGDH_uc009whn.2_Missense_Mutation_p.G101L|PHGDH_uc001eib.2_Missense_Mutation_p.G67L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	101					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CACCCCCAATGGGAACAGCCTC	0.520000													12	399					0	0	6.4e-05	0	0
PHGDH	26227	broad.mit.edu	37	1	120269632	120269633	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:120269632_120269633GG>TT	uc001ehz.2	+	5	644_645	c.417_418GG>TT	c.(415-420)ATGGGA>ATTTGA	p.139_140MG>I*	PHGDH_uc009whl.2_Nonsense_Mutation_p.41_42MG>I*|PHGDH_uc009whm.2_Nonsense_Mutation_p.37_38MG>I*|PHGDH_uc001eia.2_Nonsense_Mutation_p.139_140MG>I*|PHGDH_uc009whn.2_Nonsense_Mutation_p.139_140MG>I*|PHGDH_uc001eib.2_Nonsense_Mutation_p.105_106MG>I*	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	139_140					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	TGCAGTTCATGGGAACAGAGCT	0.559000													13	537					0	0	6.4e-05	0	0
PHGDH	26227	broad.mit.edu	37	1	120277263	120277264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:120277263_120277264GG>TT	uc001ehz.2	+	6	744_745	c.517_518GG>TT	c.(517-519)GGG>TTG	p.G173L	PHGDH_uc009whl.2_Missense_Mutation_p.G75L|PHGDH_uc009whm.2_Missense_Mutation_p.G71L|PHGDH_uc001eia.2_Missense_Mutation_p.G173L|PHGDH_uc009whn.2_Missense_Mutation_p.G173L|PHGDH_uc001eib.2_Missense_Mutation_p.G139L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	173					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCAGACTATAGGGTATGACCCC	0.446000													19	468					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120461160	120461161	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:120461160_120461161CG>AT	uc001eik.2	-	32	6053_6054	c.5797_5798CG>AT	c.(5797-5799)CGA>ATA	p.R1933I		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1933	ANK 3.|Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATCAGTTACTCGGTTGCGAATC	0.480000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				10	553					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144918892	144918893	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:144918892_144918893GG>TT	uc001elw.3	-	10	1584_1585	c.1293_1294CC>AA	c.(1291-1296)ACCCAG>ACAAAG	p.Q432K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.Q498K|PDE4DIP_uc001emc.1_Missense_Mutation_p.Q432K|PDE4DIP_uc001emd.1_Missense_Mutation_p.Q432K|PDE4DIP_uc001emb.1_Missense_Mutation_p.Q595K|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.Q219K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	432	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTTTGTTCCTGGGTTCGAATCT	0.441000			T	PDGFRB	MPD								17	875					0	0	6.4e-05	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058306	152058306	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:152058306C>T	uc001ezo.1	-	3	1917	c.1852G>A	c.(1852-1854)GAT>AAT	p.D618N		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	618							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AGCTGTACATCCTCTCCTCTG	0.557000													16	58					0	0	7.07596e-05	0	0
HRNR	388697	broad.mit.edu	37	1	152187633	152187634	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:152187633_152187634GG>TT	uc001ezt.1	-	3	6547_6548	c.6471_6472CC>AA	c.(6469-6474)TCCCGC>TCAAGC	p.R2158S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2158	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACCATAGCGGGAAGACGAAC	0.619000													24	776					0	0	6.4e-05	0	0
FLG	2312	broad.mit.edu	37	1	152279024	152279024	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:152279024G>A	uc001ezu.1	-	3	8374	c.8338C>T	c.(8338-8340)CAA>TAA	p.Q2780*		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2780	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACCGTCTTGGGATGCTGAG	0.597000									Ichthyosis				94	516					0	0	0.000147903	0	0
FLG	2312	broad.mit.edu	37	1	152285304	152285304	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:152285304C>T	uc001ezu.1	-	3	2094	c.2058G>A	c.(2056-2058)CAG>CAA	p.Q686Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	686	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGAGGAATTCTGTGTGTGAC	0.552000									Ichthyosis				100	299					0	0	0.000147903	0	0
FLG	2312	broad.mit.edu	37	1	152285890	152285890	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:152285890C>T	uc001ezu.1	-	3	1508	c.1472G>A	c.(1471-1473)GGA>GAA	p.G491E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	491	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGTCTTCCTCCAGTGCT	0.607000									Ichthyosis				36	112					0	0	0.00058488	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155935153	155935153	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:155935153G>A	uc001fmt.2	-	6	639	c.521C>T	c.(520-522)TCC>TTC	p.S174F	ARHGEF2_uc001fmr.2_Missense_Mutation_p.S147F|ARHGEF2_uc001fms.2_Missense_Mutation_p.S174F|ARHGEF2_uc001fmu.2_Missense_Mutation_p.S219F|ARHGEF2_uc010pgt.1_Missense_Mutation_p.S147F|ARHGEF2_uc010pgu.1_Missense_Mutation_p.S219F	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	174					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGAGTCTGTGGACTGTGAGAG	0.577000													30	54					0	0	0.000132358	0	0
NES	10763	broad.mit.edu	37	1	156642965	156642965	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:156642965G>A	uc001fpq.2	-	4	1148	c.1015C>T	c.(1015-1017)CCA>TCA	p.P339S		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	339	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CGGCCCTCTGGGGTCCTAGGG	0.587000													6	24					0	0	8.12818e-05	0	0
OR10J3	441911	broad.mit.edu	37	1	159283990	159283990	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:159283990G>A	uc010piu.1	-	1	460	c.460C>T	c.(460-462)CTT>TTT	p.L154F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GCCATGCCAAGGCCAATCCCC	0.507000													4	2					0	0	0.000602214	0	0
NCSTN	23385	broad.mit.edu	37	1	160321843	160321843	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:160321843G>A	uc001fvx.2	+	8	968	c.844_splice	c.e8-1	p.L282_splice	NCSTN_uc001fvy.2_Splice_Site_p.L262_splice|NCSTN_uc010pjf.1_Intron|NCSTN_uc001fvz.2_Splice_Site_p.L62_splice|NCSTN_uc010pjg.1_Splice_Site_p.L24_splice	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor						amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTTGTACCTAGCTGGATAGTC	0.488000													29	58					0	0	0.000339439	0	0
C1orf9	51430	broad.mit.edu	37	1	172571886	172571886	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:172571886C>A	uc001giq.3	+	22	3540	c.3224C>A	c.(3223-3225)CCA>CAA	p.P1075Q	C1orf9_uc010pmm.1_Missense_Mutation_p.P1075Q|C1orf9_uc009wwd.2_Missense_Mutation_p.P1031Q|C1orf9_uc010pmn.1_Missense_Mutation_p.P704Q|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	1075					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		ACTTCATTCCCACTCATGAGA	0.323000													9	286					0.00010058	0.00156299	0.00010058	1	0
NPHS2	7827	broad.mit.edu	37	1	179520438	179520438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:179520438G>A	uc001gmq.3	-	8	1107	c.1022C>T	c.(1021-1023)CCT>CTT	p.P341L	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Missense_Mutation_p.P273L|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	341	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						AAATGGCAAAGGTAAAACCAC	0.522000													11	26					0	0	0.000151284	0	0
CFHR4	10877	broad.mit.edu	37	1	196887484	196887484	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:196887484C>T	uc001gto.2	+	6	1013	c.944C>T	c.(943-945)TCA>TTA	p.S315L	CFHR4_uc009wyy.2_Missense_Mutation_p.S561L|CFHR4_uc001gtp.2_Missense_Mutation_p.S562L	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	315	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TCAGTTCTATCATTTCAAGCA	0.368000													12	23					0	0	0.000151284	0	0
SLC41A1	254428	broad.mit.edu	37	1	205779249	205779249	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:205779249G>A	uc001hdh.1	-	2	1193	c.321C>T	c.(319-321)CTC>CTT	p.L107L		NM_173854	NP_776253	Q8IVJ1	S41A1_HUMAN	solute carrier family 41 member 1	107	Helical; (Potential).					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			skin(2)	2	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AGCCTGCCAGGAGGAATGGAA	0.597000													39	55					0	0	0.000270559	0	0
PFKFB2	5208	broad.mit.edu	37	1	207235977	207235977	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:207235977G>T	uc001hfg.2	+	4	333	c.224G>T	c.(223-225)GGG>GTG	p.G75V	PFKFB2_uc010psc.1_5'UTR|PFKFB2_uc001hfh.2_Missense_Mutation_p.G75V|PFKFB2_uc009xcc.2_Missense_Mutation_p.G33V|PFKFB2_uc010psd.1_5'Flank	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	75	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					TTTAATCTTGGGGTGTATCGG	0.458000													12	498					0.000308642	0.00476846	0.000308642	1	0
HHIPL2	79802	broad.mit.edu	37	1	222717056	222717057	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:222717056_222717057GG>TT	uc001hnh.1	-	2	854_855	c.796_797CC>AA	c.(796-798)CCA>AAA	p.P266K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	266					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CCCGATCCATGGGGTGGTCAAC	0.530000													14	611					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426000													14	658					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223178204	223178205	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:223178204_223178205CC>AA	uc001hnu.1	+	8	3612_3613	c.3465_3466CC>AA	c.(3463-3468)TCCCAT>TCAAAT	p.H1156N		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1156					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GTGCCTTTTCCCATGCCTTGTC	0.475000													11	483					0	0	6.4e-05	0	0
HEATR1	55127	broad.mit.edu	37	1	236720519	236720519	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:236720519G>A	uc001hyd.1	-	37	5456	c.5331C>T	c.(5329-5331)CCC>CCT	p.P1777P	HEATR1_uc009xgh.1_Silent_p.P939P	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1777					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			CTTCCAGATAGGGGCTGATGA	0.542000													6	19					0	0	0.000274275	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358000													10	49					0	0	6.40141e-05	0	0
OR2G3	81469	broad.mit.edu	37	1	247769593	247769593	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:247769593A>G	uc010pyz.1	+	1	706	c.706A>G	c.(706-708)AAA>GAA	p.K236E		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	236	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGCAAGGCACAAAGCCTTCAG	0.473000													3	18					0	0	6.4e-05	0	0
OR2T4	127074	broad.mit.edu	37	1	248525516	248525516	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:248525516G>A	uc001ieh.1	+	1	634	c.634G>A	c.(634-636)GAA>AAA	p.E212K		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	212	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTCTTCTGTGAAGTTCCTGC	0.502000													25	23					0	0	0.00047179	0	0
OR2T1	26696	broad.mit.edu	37	1	248569723	248569723	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:248569723C>T	uc010pzm.1	+	1	428	c.428C>T	c.(427-429)TCC>TTC	p.S143F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	143	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGACCATTTCCTTTGTGGGG	0.473000													12	14					0	0	6.40141e-05	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255119	15255119	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:15255119C>T	uc001iob.2	-	8	2475	c.2468G>A	c.(2467-2469)AGA>AAA	p.R823K		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	823	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCCACCACTTCTCCGACTCGA	0.642000													25	64					0	0	0.00047179	0	0
ARMC4	55130	broad.mit.edu	37	10	28225687	28225687	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:28225687C>T	uc009xky.2	-	15	2318	c.2220G>A	c.(2218-2220)TGG>TGA	p.W740*	ARMC4_uc010qds.1_Nonsense_Mutation_p.W265*|ARMC4_uc010qdt.1_Nonsense_Mutation_p.W432*|ARMC4_uc001itz.2_Nonsense_Mutation_p.W740*	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	740							binding			ovary(4)|skin(2)	6						TGGAACATTTCCATATAGCCC	0.443000													8	45					0	0	3.86212e-05	0	0
LOC642826	642826	broad.mit.edu	37	10	47193377	47193377	+	RNA	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:47193377T>C	uc001jei.2	-	16		c.2140A>G			uc009xnf.2_Missense_Mutation_p.M248V					Homo sapiens cDNA, FLJ99065.												0						GACCAGCGCATGGACAGCTTG	0.582000													3	17					0	0	6.4e-05	0	0
CHAT	1103	broad.mit.edu	37	10	50856615	50856615	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:50856615C>T	uc001jhz.2	+	9	1497	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I	CHAT_uc001jhv.1_Silent_p.I330I|CHAT_uc001jhx.1_Silent_p.I330I|CHAT_uc001jhy.1_Silent_p.I330I|CHAT_uc001jia.2_Silent_p.I330I|CHAT_uc010qgs.1_Silent_p.I330I	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	448					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TCGATGGCATCGTCCTGGTGC	0.607000													13	23					0	0	0.000219431	0	0
OGDHL	55753	broad.mit.edu	37	10	50944148	50944148	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:50944148C>T	uc001jie.2	-	22	2972	c.2830G>A	c.(2830-2832)GAG>AAG	p.E944K	OGDHL_uc009xog.2_Missense_Mutation_p.E971K|OGDHL_uc010qgt.1_Missense_Mutation_p.E887K|OGDHL_uc010qgu.1_Missense_Mutation_p.E735K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	944					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTGTGCTCCTCCTGACACCAG	0.577000													12	24					0	0	6.40141e-05	0	0
ANK3	288	broad.mit.edu	37	10	61834169	61834169	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:61834169G>A	uc001jky.2	-	37	6662	c.6470C>T	c.(6469-6471)CCC>CTC	p.P2157L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2157					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGGAGGGATGGGAACTTCATG	0.483000													4	18					0	0	0.00024832	0	0
ATOH7	220202	broad.mit.edu	37	10	69991054	69991054	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:69991054C>T	uc001jnq.2	-	1	802	c.381G>A	c.(379-381)GCG>GCA	p.A127A		NM_145178	NP_660161	Q8N100	ATOH7_HUMAN	atonal homolog 7	127					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CCGGCAGCTTCGCGCCCGGGA	0.706000													6	23					0	0	8.12818e-05	0	0
NDST2	8509	broad.mit.edu	37	10	75566505	75566505	+	Silent	SNP	G	A	A	rs35023121	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:75566505G>A	uc001jvk.2	-	5	1962	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	NDST2_uc010qks.1_Silent_p.F12F|NDST2_uc010qkt.1_Silent_p.F263F|NDST2_uc001jvl.1_5'Flank|NDST2_uc009xro.2_Silent_p.F12F|NDST2_uc010qku.1_Silent_p.F261F	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	386	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					ACATGTGGGGGAACCACCAGA	0.577000													12	32					0	0	0.000151284	0	0
OPN4	94233	broad.mit.edu	37	10	88419090	88419090	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:88419090C>T	uc001kdq.2	+	5	892	c.665C>T	c.(664-666)TCC>TTC	p.S222F	OPN4_uc001kdp.2_Missense_Mutation_p.S233F|OPN4_uc010qmk.1_Missense_Mutation_p.S233F|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	222	Extracellular (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						ACATCCTGCTCCTGGGACTAC	0.612000													16	80					0	0	0.000308642	0	0
LIPF	8513	broad.mit.edu	37	10	90427420	90427420	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:90427420G>A	uc001kfg.1	+	3	366	c.200G>A	c.(199-201)GGG>GAG	p.G67E	LIPF_uc009xtk.2_Missense_Mutation_p.G67E|LIPF_uc001kfh.1_Missense_Mutation_p.G77E|LIPF_uc010qmt.1_Missense_Mutation_p.G77E|LIPF_uc010qmu.1_Missense_Mutation_p.G67E	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	67					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		ATTCCTTATGGGAAGAAAAAT	0.229000													16	114					0	0	9.7654e-05	0	0
HTR7	3363	broad.mit.edu	37	10	92508946	92508946	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:92508946G>A	uc001kha.2	-	2	1188	c.945C>T	c.(943-945)AAC>AAT	p.N315N	HTR7_uc001kgz.2_Silent_p.N315N|HTR7_uc001khb.2_Silent_p.N315N	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	315	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	AGATGGAGATGTTTTTCCTTT	0.527000													5	15					0	0	0.000602214	0	0
CPEB3	22849	broad.mit.edu	37	10	93851667	93851667	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:93851667T>C	uc001khw.1	-	8	1780	c.1607A>G	c.(1606-1608)GAC>GGC	p.D536G	CPEB3_uc001khu.1_Missense_Mutation_p.D545G|CPEB3_uc001khv.1_Missense_Mutation_p.D522G|CPEB3_uc010qnn.1_Missense_Mutation_p.D522G	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	536							nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				CATTACAAAGTCACTGTCACT	0.428000													15	27					0	0	7.07596e-05	0	0
OPALIN	93377	broad.mit.edu	37	10	98105749	98105749	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:98105749C>T	uc001kmj.2	-	6	814	c.375G>A	c.(373-375)ATG>ATA	p.M125I	OPALIN_uc010qor.1_Missense_Mutation_p.M115I|OPALIN_uc001kmi.2_Missense_Mutation_p.M115I|OPALIN_uc001kmk.2_Missense_Mutation_p.M102I|OPALIN_uc010qos.1_RNA	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	125						Golgi apparatus|integral to membrane|plasma membrane					0						TCCTTCTTTCCATTTCTATAG	0.512000													5	6					0	0	3.59834e-05	0	0
HIF1AN	55662	broad.mit.edu	37	10	102300526	102300526	+	Silent	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:102300526C>G	uc001krj.3	+	3	639	c.564C>G	c.(562-564)CTC>CTG	p.L188L		NM_017902	NP_060372	Q9NWT6	HIF1N_HUMAN	hypoxia-inducible factor 1, alpha subunit	188	JmjC.|Interaction with HIF1A.|Interaction with VHL.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|protein binding				0		Colorectal(252;0.234)		Epithelial(162;6.75e-10)|all cancers(201;4.88e-08)		ACCTGCTGCTCATTGGCATGG	0.294000													3	60					0	0	6.4e-05	0	0
SORCS3	22986	broad.mit.edu	37	10	106924130	106924131	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:106924130_106924131GG>AA	uc001kyi.1	+	12	2029_2030	c.1802_1803GG>AA	c.(1801-1803)TGG>TAA	p.W601*		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	601	BNR 5.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GGCAACACATGGAGACAGGTAA	0.446000													5	7					0	0	6.4e-05	0	0
TACC2	10579	broad.mit.edu	37	10	123842478	123842478	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:123842478C>T	uc001lfv.2	+	4	823	c.463C>T	c.(463-465)CCC>TCC	p.P155S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P155S|TACC2_uc010qtv.1_Missense_Mutation_p.P155S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	155						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGCGGCATTTCCCGCTGAGAG	0.587000													7	18					0	0	8.12818e-05	0	0
DMBT1	1755	broad.mit.edu	37	10	124350197	124350197	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:124350197G>A	uc001lgk.1	+	18	2230	c.2124G>A	c.(2122-2124)TCG>TCA	p.S708S	DMBT1_uc001lgl.1_Silent_p.S698S|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Silent_p.S708S|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	708					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGTCCCGGTCGACGCCCAGGC	0.507000													142	254					0	0	0.000147903	0	0
IKZF5	64376	broad.mit.edu	37	10	124753954	124753954	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:124753954G>A	uc001lha.2	-	5	901	c.602C>T	c.(601-603)CCA>CTA	p.P201L	IKZF5_uc001lgz.2_Missense_Mutation_p.P39L	NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	201					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		CATGGAAGGTGGACTTAAGTT	0.423000													72	113					0	0	0.000147903	0	0
C10orf137	26098	broad.mit.edu	37	10	127436243	127436243	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr10:127436243T>A	uc001liq.1	+	20	3246	c.2953T>A	c.(2953-2955)TCT>ACT	p.S985T	C10orf137_uc001lin.2_Missense_Mutation_p.S951T|C10orf137_uc001lio.1_Missense_Mutation_p.S951T|C10orf137_uc001lip.1_Missense_Mutation_p.S689T|C10orf137_uc001lis.1_Missense_Mutation_p.S311T|C10orf137_uc001lit.1_5'Flank	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	985					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TGCTCCGTTATCTAGAAAAGC	0.378000													4	17					0	0	0.00024832	0	0
LRRC56	115399	broad.mit.edu	37	11	554044	554044	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:554044C>T	uc010qvz.1	+	14	1902	c.1397C>T	c.(1396-1398)CCG>CTG	p.P466L		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	466										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGCAGCTCCCCGCGGTGGTCG	0.677000													13	39					0	0	0.000566183	0	0
MUC6	4588	broad.mit.edu	37	11	1019476	1019477	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:1019476_1019477CC>TT	uc001lsw.2	-	30	3879_3880	c.3828_3829GG>AA	c.(3826-3831)ACGGCC>ACAACC	p.A1277T		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1277	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGGTGACGGCCGTGGTTGGTC	0.639000													27	114					0	0	6.4e-05	0	0
OR51I2	390064	broad.mit.edu	37	11	5475540	5475540	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:5475540C>T	uc010qzf.1	+	1	822	c.822C>T	c.(820-822)GTC>GTT	p.V274V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATACATGTCCTCATGTCAA	0.478000													23	96					0	0	9.22233e-05	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17140817	17140817	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:17140817C>T	uc001mmq.3	-	16	2956	c.2890G>A	c.(2890-2892)GAG>AAG	p.E964K	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.E584K|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	964					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	CTAATGGCCTCAATCCAGGTC	0.378000													21	65					0	0	0.000295444	0	0
ABCC8	6833	broad.mit.edu	37	11	17449905	17449906	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:17449905_17449906CC>AA	uc001mnc.2	-	14	2096_2097	c.1970_1971GG>TT	c.(1969-1971)CGG>CTT	p.R657L		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	657	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CGGTGAGGCCCCGACAATCCTC	0.663000													8	155					0	0	6.4e-05	0	0
ABCC8	6833	broad.mit.edu	37	11	17474817	17474818	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:17474817_17474818CC>AA	uc001mnc.2	-	7	1150_1151	c.1024_1025GG>TT	c.(1024-1026)GGG>TTG	p.G342L	ABCC8_uc010rcy.1_Missense_Mutation_p.G341L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	342	Extracellular (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AAAGTAAACCCCGAGAAATTGT	0.480000													8	169					0	0	6.4e-05	0	0
OR5D14	219436	broad.mit.edu	37	11	55563485	55563485	+	Missense_Mutation	SNP	C	T	T	rs138241507		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:55563485C>T	uc010rim.1	+	1	454	c.454C>T	c.(454-456)CTC>TTC	p.L152F		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGGGTCATATCTCTGGGGCAT	0.498000													4	17					0	0	0.00024832	0	0
OR8J3	81168	broad.mit.edu	37	11	55904804	55904804	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:55904804G>A	uc010riz.1	-	1	391	c.391C>T	c.(391-393)CTC>TTC	p.L131F		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					ACCATGTAGAGCAGAGGGTTA	0.502000													23	55					0	0	0.000375601	0	0
OR4D10	390197	broad.mit.edu	37	11	59245544	59245544	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:59245544C>T	uc001nnz.1	+	1	642	c.642C>T	c.(640-642)CTC>CTT	p.L214L		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TTTTCCTGCTCCTGGTGTCCT	0.488000													6	17					0	0	3.59834e-05	0	0
MS4A15	219995	broad.mit.edu	37	11	60541315	60541316	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:60541315_60541316GG>AA	uc009ynf.1	+	6	724_725	c.504_505GG>AA	c.(502-507)GTGGAC>GTAAAC	p.D169N	MS4A15_uc001npx.2_Missense_Mutation_p.D76N|MS4A15_uc001npy.2_RNA|MS4A15_uc009yng.1_Missense_Mutation_p.D128N	NM_001098835	NP_001092305	Q8N5U1	M4A15_HUMAN	membrane-spanning 4-domains, subfamily A, member	169						integral to membrane	receptor activity			lung(1)	1						CCCAGGATGTGGACAGGGGCTA	0.500000													19	67					0	0	6.4e-05	0	0
TM7SF2	7108	broad.mit.edu	37	11	64883442	64883442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:64883442C>T	uc001oct.2	+	10	1321	c.1174C>T	c.(1174-1176)CGG>TGG	p.R392W	TM7SF2_uc010rny.1_Missense_Mutation_p.R276W|TM7SF2_uc001ocu.2_Missense_Mutation_p.R365W|TM7SF2_uc001ocv.2_Missense_Mutation_p.R413W|uc009yqb.1_5'Flank	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	392					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						CCGGGATGAGCGGCAGTGCCT	0.627000													10	17					0	0	3.86212e-05	0	0
SART1	9092	broad.mit.edu	37	11	65734802	65734802	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:65734802G>A	uc001ogl.2	+	10	1353	c.1261G>A	c.(1261-1263)GAT>AAT	p.D421N	SART1_uc010rot.1_3'UTR	NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	421					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						AGTGCGGGCAGATGACTTGCT	0.587000													29	121					0	0	0.000279167	0	0
RIN1	9610	broad.mit.edu	37	11	66102622	66102622	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:66102622C>G	uc001ohn.1	-	6	775	c.648G>C	c.(646-648)CAG>CAC	p.Q216H	RIN1_uc010roy.1_5'UTR|RIN1_uc009yrd.1_5'UTR|RIN1_uc010roz.1_Missense_Mutation_p.Q111H|RIN1_uc010rpa.1_Missense_Mutation_p.Q111H	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	216					endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CTCCGGTGCCCTGGTCCAGCT	0.637000													3	33					0	0	6.4e-05	0	0
RCE1	9986	broad.mit.edu	37	11	66613398	66613398	+	Silent	SNP	G	A	A	rs139646297		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:66613398G>A	uc001ojk.1	+	8	866	c.822G>A	c.(820-822)GCG>GCA	p.A274A	RCE1_uc001ojl.1_Silent_p.A170A	NM_005133	NP_005124	Q9Y256	FACE2_HUMAN	prenyl protein peptidase RCE1 isoform 1	274	Helical; (Potential).				proteolysis	endoplasmic reticulum membrane|integral to plasma membrane	metalloendopeptidase activity			ovary(1)|breast(1)	2						CTGTTTGCGCGGCCTTGGAGC	0.617000													12	73					0	0	0.000151284	0	0
GSTP1	2950	broad.mit.edu	37	11	67353993	67353993	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:67353993T>C	uc001omf.2	+	7	827	c.578T>C	c.(577-579)TTC>TCC	p.F193S	GSTP1_uc001omg.1_Missense_Mutation_p.F174S	NM_000852	NP_000843	P09211	GSTP1_HUMAN	glutathione transferase	193	GST C-terminal.				anti-apoptosis|cellular response to lipopolysaccharide|central nervous system development|common myeloid progenitor cell proliferation|glutathione metabolic process|negative regulation of acute inflammatory response|negative regulation of ERK1 and ERK2 cascade|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 beta production|negative regulation of JUN kinase activity|negative regulation of leukocyte proliferation|negative regulation of monocyte chemotactic protein-1 production|negative regulation of necrotic cell death|negative regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of stress-activated MAPK cascade|negative regulation of tumor necrosis factor production|nitric oxide storage|positive regulation of superoxide anion generation|response to reactive oxygen species|xenobiotic metabolic process	cytosol|protein complex	dinitrosyl-iron complex binding|glutathione transferase activity|JUN kinase binding|kinase regulator activity|nitric oxide binding|S-nitrosoglutathione binding			ovary(1)	1					Ethacrynic acid(DB00903)|Glutathione(DB00143)	CTCAAGGCCTTCCTGGCCTCC	0.622000													13	21					0	0	0.000219431	0	0
XRRA1	143570	broad.mit.edu	37	11	74554479	74554479	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:74554479C>T	uc009yub.2	-	19	2477	c.2145G>A	c.(2143-2145)TGG>TGA	p.W715*	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovn.2_Nonsense_Mutation_p.W338*|XRRA1_uc001ovo.2_Nonsense_Mutation_p.W323*|XRRA1_uc001ovq.3_Missense_Mutation_p.G593E|XRRA1_uc001ovp.3_Nonsense_Mutation_p.W440*|XRRA1_uc001ovr.2_3'UTR|XRRA1_uc001ovs.1_3'UTR	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	715					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						GCCGTTCTGTCCACTGGTGCA	0.582000													3	6					0	0	0.00024832	0	0
RSF1	51773	broad.mit.edu	37	11	77412870	77412870	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:77412870C>T	uc001oyn.2	-	6	1524	c.1404G>A	c.(1402-1404)AAG>AAA	p.K468K	RSF1_uc001oym.2_Silent_p.K216K	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	468					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			AGCTCTCTTCCTTTGTCTCAT	0.398000													4	32					0	0	0.00024832	0	0
NAALAD2	10003	broad.mit.edu	37	11	89891349	89891349	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr11:89891349G>A	uc001pdf.3	+	7	942	c.833G>A	c.(832-834)GGA>GAA	p.G278E	NAALAD2_uc009yvx.2_Missense_Mutation_p.G278E|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pdd.2_Missense_Mutation_p.G278E|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	278	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GAAGGAGTGGGAATCCCCCGA	0.269000													17	72					0	0	0.000175454	0	0
SLC6A13	6540	broad.mit.edu	37	12	369146	369146	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:369146C>T	uc001qic.1	-	2	126	c.73G>A	c.(73-75)GAG>AAG	p.E25K	SLC6A13_uc009zdj.1_Missense_Mutation_p.E25K|SLC6A13_uc010sdl.1_Missense_Mutation_p.E25K|SLC6A13_uc001qid.1_Missense_Mutation_p.E25K	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	25	Cytoplasmic (Potential).			Missing (in Ref. 1; AAF64247).	neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CCATCTTCCTCCTTCTTTTCC	0.522000													24	90					0	0	0.000117367	0	0
STYK1	55359	broad.mit.edu	37	12	10783853	10783853	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:10783853C>T	uc001qys.2	-	5	763	c.242G>A	c.(241-243)GGA>GAA	p.G81E		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	81						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						AGCCACATTTCCTCCATGTCC	0.557000										HNSCC(73;0.22)			32	49					0	0	0.000109025	0	0
GSG1	83445	broad.mit.edu	37	12	13240172	13240172	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:13240172C>T	uc001rbn.2	-	6	833	c.660G>A	c.(658-660)ATG>ATA	p.M220I	GSG1_uc001rbj.2_Missense_Mutation_p.M184I|GSG1_uc001rbk.2_Missense_Mutation_p.D226N|GSG1_uc001rbl.2_Missense_Mutation_p.M156I|GSG1_uc001rbm.2_Missense_Mutation_p.M133I|GSG1_uc001rbo.2_Missense_Mutation_p.D262N|GSG1_uc001rbp.2_Missense_Mutation_p.M197I|GSG1_uc001rbq.1_Missense_Mutation_p.D262N	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	207	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		GTGAATACATCATGTGGGCCA	0.498000													5	37					0	0	3.59834e-05	0	0
ART4	420	broad.mit.edu	37	12	14993586	14993586	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:14993586C>T	uc001rcl.1	-	2	1012	c.646G>A	c.(646-648)GAG>AAG	p.E216K	ART4_uc009zid.1_Intron|ART4_uc009zie.1_Intron|ART4_uc001rcm.1_Missense_Mutation_p.E216K	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	216					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						TCCTGTGCCTCTTCTTTCAGG	0.493000													4	18					0	0	0.00024832	0	0
GYS2	2998	broad.mit.edu	37	12	21690091	21690091	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:21690091G>A	uc001rfb.2	-	16	2164	c.1909C>T	c.(1909-1911)CCC>TCC	p.P637S		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	637					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GAAGGCCTGGGATATTTAAAT	0.433000													5	13					0	0	8.12818e-05	0	0
GYS2	2998	broad.mit.edu	37	12	21716251	21716251	+	Silent	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:21716251A>G	uc001rfb.2	-	6	1107	c.852T>C	c.(850-852)GTT>GTC	p.V284V		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	284					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						AAAATTTCTTAACATTCAAGC	0.338000													37	58					0	0	0.000132358	0	0
ABCC9	10060	broad.mit.edu	37	12	22025665	22025665	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:22025665C>T	uc001rfi.1	-	16	2113	c.2093_splice	c.e16-1	p.G698_splice	ABCC9_uc001rfh.2_Splice_Site_p.G698_splice|ABCC9_uc001rfj.1_Splice_Site_p.G662_splice	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9						defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GTTAACTGACCTAGGAAAGCA	0.403000													45	103					0	0	0.000147903	0	0
LRRK2	120892	broad.mit.edu	37	12	40704267	40704267	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:40704267G>A	uc001rmg.3	+	31	4473	c.4352G>A	c.(4351-4353)GGC>GAC	p.G1451D	LRRK2_uc009zjw.2_Missense_Mutation_p.G289D|LRRK2_uc001rmi.2_Missense_Mutation_p.G284D	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1451	Roc.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATTCTCGTTGGCACACATTTG	0.488000													4	15					0	0	0.000602214	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42853782	42853782	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:42853782T>G	uc010skv.1	-	8	2612	c.2325A>C	c.(2323-2325)GAA>GAC	p.E775D	PRICKLE1_uc001rnl.2_Missense_Mutation_p.E775D|PRICKLE1_uc010skw.1_Missense_Mutation_p.E775D|PRICKLE1_uc001rnm.2_Missense_Mutation_p.E775D|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	775					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		GAAAATATCCTTCTTCTTCCG	0.517000													26	36					0	0	0.000586117	0	0
ACVRL1	94	broad.mit.edu	37	12	52306947	52306947	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:52306947G>A	uc001rzj.2	+	3	409	c.126G>A	c.(124-126)AAG>AAA	p.K42K	ACVRL1_uc001rzk.2_Silent_p.K42K|ACVRL1_uc010snm.1_Intron	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	42	Extracellular (Potential).				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CACATTGCAAGGGGCCTACCT	0.672000									Hereditary_Hemorrhagic_Telangiectasia				9	21					0	0	0.000442599	0	0
KRT84	3890	broad.mit.edu	37	12	52775207	52775207	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:52775207C>T	uc001sah.1	-	5	1063	c.1015G>A	c.(1015-1017)GCC>ACC	p.A339T		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	339	Rod.|Coil 2.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCATACTGGGCCTTGACCTCA	0.587000													31	156					0	0	0.000339439	0	0
KRT79	338785	broad.mit.edu	37	12	53216811	53216811	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:53216811G>A	uc001sbb.2	-	7	1389	c.1356C>T	c.(1354-1356)AGC>AGT	p.S452S	KRT79_uc001sba.2_Silent_p.S223S	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	452	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TGCTCTCCTCGCTCTCCAGAA	0.652000													10	29					0	0	0.00010058	0	0
PTPRB	5787	broad.mit.edu	37	12	70949773	70949773	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:70949773C>T	uc001swb.3	-	17	4246	c.4216G>A	c.(4216-4218)GAA>AAA	p.E1406K	PTPRB_uc010sto.1_Missense_Mutation_p.E1316K|PTPRB_uc010stp.1_Missense_Mutation_p.E1316K|PTPRB_uc001swc.3_Missense_Mutation_p.E1624K|PTPRB_uc001swa.3_Missense_Mutation_p.E1536K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1406	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGAGATTTTTCTTTCTCCAGC	0.468000													4	11					0	0	0.000602214	0	0
RASSF9	9182	broad.mit.edu	37	12	86198613	86198613	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:86198613C>T	uc001taf.1	-	2	1514	c.1175G>A	c.(1174-1176)GGG>GAG	p.G392E		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	392					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						AGGAATCTCCCCATTGCTACT	0.443000													37	135					0	0	0.000270559	0	0
PLXNC1	10154	broad.mit.edu	37	12	94673364	94673364	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:94673364C>G	uc001tdc.2	+	22	3963	c.3714C>G	c.(3712-3714)TTC>TTG	p.F1238L	PLXNC1_uc010sut.1_Missense_Mutation_p.F285L|PLXNC1_uc009zsv.2_5'UTR	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1238	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AAAAGATTTTCCAAGCATTCT	0.448000													19	90					0	0	0.000229342	0	0
PLXNC1	10154	broad.mit.edu	37	12	94673381	94673381	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:94673381A>G	uc001tdc.2	+	22	3980	c.3731A>G	c.(3730-3732)AAA>AGA	p.K1244R	PLXNC1_uc010sut.1_Missense_Mutation_p.K291R|PLXNC1_uc009zsv.2_5'UTR	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1244	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TTCTTAAGCAAAAATGGCTCT	0.433000													17	84					0	0	0.000175454	0	0
C12orf51	283450	broad.mit.edu	37	12	112672931	112672931	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:112672931G>A	uc009zwc.2	-	30	4617	c.4599C>T	c.(4597-4599)ATC>ATT	p.I1533I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CCCGCTTGTGGATAAATATCG	0.383000													3	8					0	0	6.4e-05	0	0
C12orf43	64897	broad.mit.edu	37	12	121442062	121442063	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:121442062_121442063CC>AA	uc001tzh.1	-	6	705_706	c.682_683GG>TT	c.(682-684)GGG>TTG	p.G228L	C12orf43_uc009zxa.1_Missense_Mutation_p.G259L|C12orf43_uc010szo.1_Missense_Mutation_p.G187L|C12orf43_uc010szp.1_Missense_Mutation_p.G218L|C12orf43_uc001tzi.1_Missense_Mutation_p.G229L	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	228	Lys-rich.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACCTGGTCCCCGTTGAGCTCA	0.559000													19	876					0	0	6.4e-05	0	0
P2RX7	5027	broad.mit.edu	37	12	121614949	121614950	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:121614949_121614950GG>TT	uc001tzm.2	+	10	1069	c.973_splice	c.e10-1	p.G325_splice	P2RX7_uc001tzn.2_Splice_Site_p.G235_splice|P2RX7_uc001tzo.2_Splice_Site|P2RX7_uc001tzp.2_Splice_Site_p.G36_splice|P2RX7_uc001tzq.2_Splice_Site_p.G155_splice	NM_002562	NP_002553	Q99572	P2RX7_HUMAN	purinergic receptor P2X7							integral to membrane	ATP binding|ion channel activity|receptor activity			large_intestine(2)|lung(1)|breast(1)|skin(1)	5	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCTGTTTTTAGGGAGGAAAATT	0.450000													12	428					0	0	6.4e-05	0	0
SBNO1	55206	broad.mit.edu	37	12	123829915	123829915	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:123829915G>A	uc010tap.1	-	3	440	c.440C>T	c.(439-441)CCT>CTT	p.P147L	SBNO1_uc010tao.1_Missense_Mutation_p.P146L|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.P147L|SBNO1_uc001ueu.2_Missense_Mutation_p.P146L|SBNO1_uc001uev.2_Missense_Mutation_p.P145L|SBNO1_uc009zxy.1_Missense_Mutation_p.P112L	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	147							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		GTCTTTTGAAGGTGCAGAGGT	0.418000													47	106					0	0	0.000147903	0	0
DNAH10	196385	broad.mit.edu	37	12	124330613	124330613	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:124330613C>T	uc001uft.3	+	31	5397	c.5372C>T	c.(5371-5373)ACC>ATC	p.T1791I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1791	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGCACGGGAACCTTTGGCTAC	0.592000													28	63					0	0	0.000279167	0	0
STX2	2054	broad.mit.edu	37	12	131293178	131293179	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:131293178_131293179GG>TT	uc001uio.2	-	5	518_519	c.351_352CC>AA	c.(349-354)ACCCAG>ACAAAG	p.Q118K	STX2_uc001uip.2_Missense_Mutation_p.Q118K|STX2_uc010tbj.1_Missense_Mutation_p.Q118K	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	118	Cytoplasmic (Potential).				acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		TAGCAAACCTGGGTTCTTCGTA	0.381000													20	655					0	0	6.4e-05	0	0
DDX51	317781	broad.mit.edu	37	12	132627336	132627336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr12:132627336G>A	uc001ujy.3	-	3	646	c.607C>T	c.(607-609)CCT>TCT	p.P203S	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	203					rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		TGGACGTCAGGGATGTCCTCG	0.592000													19	127					0	0	0.000229342	0	0
FLT1	2321	broad.mit.edu	37	13	29041220	29041220	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:29041220C>T	uc001usb.3	-	3	493	c.208G>A	c.(208-210)GAA>AAA	p.E70K	FLT1_uc010aar.1_Missense_Mutation_p.E70K|FLT1_uc001usc.3_Missense_Mutation_p.E70K|FLT1_uc010tdp.1_Missense_Mutation_p.E70K|FLT1_uc001usd.2_Missense_Mutation_p.E70K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	70	Ig-like C2-type 1.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTTTCGCTTTCCTTACTCACC	0.448000													18	42					0	0	0.000175454	0	0
KATNAL1	84056	broad.mit.edu	37	13	30829678	30829679	+	Missense_Mutation	DNP	CG	AT	AT	rs149984675		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:30829678_30829679CG>AT	uc001uss.2	-	4	498_499	c.397_398CG>AT	c.(397-399)CGG>ATG	p.R133M	KATNAL1_uc001ust.2_Missense_Mutation_p.R133M	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	133						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		TACAGGTCCCCGGGCTCCTACT	0.455000													8	264					0	0	6.4e-05	0	0
RXFP2	122042	broad.mit.edu	37	13	32363266	32363266	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:32363266G>A	uc001utt.2	+	14	1152	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	RXFP2_uc010aba.2_Missense_Mutation_p.E320K	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	361	Extracellular (Potential).|LRR 10.					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		CAGAGACCTGGAAAGGATAGA	0.343000													9	37					0	0	0.000442599	0	0
C13orf18	80183	broad.mit.edu	37	13	46917568	46917568	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:46917568G>A	uc010acl.2	-	15	2546	c.1941C>T	c.(1939-1941)ATC>ATT	p.I647I	C13orf18_uc010tfy.1_Silent_p.I170I|C13orf18_uc001vbf.3_Silent_p.I580I|C13orf18_uc001vbg.3_Silent_p.I375I|C13orf18_uc010tfz.1_Silent_p.I490I|C13orf18_uc010acm.2_Silent_p.I512I|C13orf18_uc010acn.2_Silent_p.I432I|C13orf18_uc001vbe.3_Missense_Mutation_p.S596L|C13orf18_uc001vbh.3_Silent_p.I647I|C13orf18_uc001vbi.3_Silent_p.I490I	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	647											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		TCCTCGCTGTGATCCTCGCAC	0.527000													6	27					0	0	8.12818e-05	0	0
PCDH17	27253	broad.mit.edu	37	13	58208094	58208094	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:58208094T>C	uc001vhq.1	+	1	2306	c.1414T>C	c.(1414-1416)TTC>CTC	p.F472L	PCDH17_uc010aec.1_Missense_Mutation_p.F472L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	472	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CCCGCCTCGGTTCACCAAAGG	0.617000													5	29					0	0	0.000602214	0	0
SOX21	11166	broad.mit.edu	37	13	95364222	95364222	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:95364222G>A	uc001vma.2	-	1	168	c.82C>T	c.(82-84)CAG>TAG	p.Q28*	uc001vmb.1_5'Flank	NM_007084	NP_009015	Q9Y651	SOX21_HUMAN	SRY-box 21	28	HMG box.				regulation of transcription from RNA polymerase II promoter|stem cell differentiation	nucleus	DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0	all_neural(89;0.0646)|Medulloblastoma(90;0.163)					GGGTTCTCCTGGGCCATCTTG	0.647000													8	23					0	0	0.000274275	0	0
ABCC4	10257	broad.mit.edu	37	13	95858979	95858979	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:95858979G>A	uc001vmd.3	-	8	1087	c.968C>T	c.(967-969)TCA>TTA	p.S323L	ABCC4_uc010afk.2_Missense_Mutation_p.S323L|ABCC4_uc001vme.2_Missense_Mutation_p.S323L|ABCC4_uc010tih.1_Missense_Mutation_p.S248L|ABCC4_uc001vmf.2_Missense_Mutation_p.S280L|ABCC4_uc010afl.1_Missense_Mutation_p.S280L|ABCC4_uc010afm.1_Missense_Mutation_p.S336L	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	323	ABC transmembrane type-1 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	ACTGAAAAATGAAGCCAAATT	0.473000													27	110					0	0	0.000191422	0	0
IPO5	3843	broad.mit.edu	37	13	98652899	98652899	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:98652899C>T	uc001vnf.1	+	10	1173	c.1108C>T	c.(1108-1110)CCT>TCT	p.P370S	IPO5_uc001vne.2_Missense_Mutation_p.P388S|IPO5_uc010tik.1_Missense_Mutation_p.P245S|IPO5_uc010til.1_Missense_Mutation_p.P310S|IPO5_uc001vng.1_5'Flank	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	370	Ran-GTP binding (By similarity).				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding	p.G370V(1)		ovary(1)|lung(1)|skin(1)	3						GCTTCAAAATCGTAAGCTGTG	0.398000													23	90					0	0	0.00047179	0	0
NALCN	259232	broad.mit.edu	37	13	101762990	101762990	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:101762990G>A	uc001vox.1	-	20	2533	c.2344C>T	c.(2344-2346)CTT>TTT	p.L782F		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	782	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAAGTTTCAAGAGATTTTCCC	0.383000													5	3					0	0	8.12818e-05	0	0
COL4A1	1282	broad.mit.edu	37	13	110838777	110838777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:110838777C>T	uc001vqw.3	-	26	1974	c.1852G>A	c.(1852-1854)GGA>AGA	p.G618R	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	618	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTGCTTGTCCTTTGTCACCA	0.617000													19	90					0	0	7.07596e-05	0	0
GAS6	2621	broad.mit.edu	37	13	114524980	114524980	+	Silent	SNP	G	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr13:114524980G>T	uc001vud.2	-	14	1986	c.1833C>A	c.(1831-1833)CTC>CTA	p.L611L	GAS6_uc001vug.2_Silent_p.L312L|GAS6_uc001vuf.2_Silent_p.L338L	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	654	Laminin G-like 2.				cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				GGTGCCTCTCGAGCACGGCCA	0.716000													4	4					0.00024832	0.00384392	0.00024832	1	0
OR4K5	79317	broad.mit.edu	37	14	20389533	20389533	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:20389533C>T	uc010tkw.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTGCATCTTCATCTATGTGT	0.398000													21	55					0	0	0.000375601	0	0
NFATC4	4776	broad.mit.edu	37	14	24842431	24842431	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:24842431G>A	uc001wpc.2	+	4	1735	c.1414G>A	c.(1414-1416)GAT>AAT	p.D472N	NFATC4_uc010tok.1_Missense_Mutation_p.D535N|NFATC4_uc010tol.1_Missense_Mutation_p.D535N|NFATC4_uc010alr.2_Missense_Mutation_p.D535N|NFATC4_uc010als.2_Missense_Mutation_p.D485N|NFATC4_uc010tom.1_Missense_Mutation_p.D485N|NFATC4_uc010ton.1_Missense_Mutation_p.D485N|NFATC4_uc010too.1_Missense_Mutation_p.D485N|NFATC4_uc010alt.2_Missense_Mutation_p.D504N|NFATC4_uc010top.1_Missense_Mutation_p.D504N|NFATC4_uc010toq.1_Missense_Mutation_p.D504N|NFATC4_uc010alu.2_Missense_Mutation_p.D164N|NFATC4_uc010tor.1_Missense_Mutation_p.D472N|NFATC4_uc010tos.1_Missense_Mutation_p.D402N|NFATC4_uc010tot.1_Missense_Mutation_p.D460N|NFATC4_uc010tou.1_Missense_Mutation_p.D402N|NFATC4_uc010tov.1_Missense_Mutation_p.D460N|NFATC4_uc010tow.1_Missense_Mutation_p.D402N|NFATC4_uc010alv.2_Missense_Mutation_p.D460N|NFATC4_uc010tox.1_Missense_Mutation_p.D402N|NFATC4_uc001wpd.2_Missense_Mutation_p.D7N|NFATC4_uc010toy.1_Missense_Mutation_p.D7N|NFATC4_uc010toz.1_Missense_Mutation_p.D7N|NFATC4_uc010tpa.1_5'Flank|NFATC4_uc010tpb.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	472	RHD.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CGGCACTGCAGATGAAAGGAA	0.567000													44	58					0	0	0.000147903	0	0
MIA2	117153	broad.mit.edu	37	14	39703424	39703424	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:39703424G>A	uc001wux.2	+	1	300	c.106G>A	c.(106-108)GAA>AAA	p.E36K	MIA2_uc010amy.1_5'UTR	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	36	SH3.					extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TGGTGACTTGGAATGTGAAGG	0.408000													6	7					0	0	3.59834e-05	0	0
KCNH5	27133	broad.mit.edu	37	14	63453898	63453898	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:63453898C>T	uc001xfx.2	-	5	492	c.441G>A	c.(439-441)ACG>ACA	p.T147T	KCNH5_uc001xfy.2_Silent_p.T147T|KCNH5_uc001xfz.1_Silent_p.T89T|KCNH5_uc001xga.2_Silent_p.T89T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	147	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGGCAAATTTCGTCCAACCTT	0.388000													8	26					0	0	0.000157383	0	0
KCNH5	27133	broad.mit.edu	37	14	63473091	63473091	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:63473091C>T	uc001xfx.2	-	3	348	c.297G>A	c.(295-297)AAG>AAA	p.K99K	KCNH5_uc001xfy.2_Silent_p.K99K|KCNH5_uc001xfz.1_Silent_p.K41K|KCNH5_uc001xga.2_Silent_p.K41K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	99	PAC.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TACTGTTTTTCTTGTACAGAA	0.338000													5	13					0	0	8.12818e-05	0	0
SYNE2	23224	broad.mit.edu	37	14	64691256	64691257	+	Silent	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:64691256_64691257CC>AA	uc001xgm.2	+	113	20621_20622	c.20391_20392CC>AA	c.(20389-20394)CCCCGA>CCAAGA	p.6797_6798PR>PR	SYNE2_uc001xgl.2_Silent_p.6820_6821PR>PR|SYNE2_uc010apy.2_Silent_p.3182_3183PR>PR|SYNE2_uc001xgn.2_Silent_p.1759_1760PR>PR|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Silent_p.767_768PR>PR|SYNE2_uc001xgq.2_Silent_p.1176_1177PR>PR|SYNE2_uc001xgr.2_Silent_p.580_581PR>PR|SYNE2_uc010tsi.1_Silent_p.454_455PR>PR|SYNE2_uc001xgs.2_Silent_p.468_469PR>PR|SYNE2_uc001xgt.2_Silent_p.342_343PR>PR	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6797_6798	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGCCAGCTCCCCGAGCAAAGGT	0.535000													9	111					0	0	6.4e-05	0	0
MTHFD1	4522	broad.mit.edu	37	14	64906890	64906890	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:64906890C>T	uc001xhb.2	+	18	2108	c.1721C>T	c.(1720-1722)GCT>GTT	p.A574V	MTHFD1_uc010aqe.2_Missense_Mutation_p.A610V|MTHFD1_uc010aqf.2_Missense_Mutation_p.A630V	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	574	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	GCTGTCCTGGCTCTCACCACT	0.493000													38	73					0	0	0.000319135	0	0
SMOC1	64093	broad.mit.edu	37	14	70442529	70442529	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:70442529C>T	uc001xls.1	+	4	729	c.476C>T	c.(475-477)TCA>TTA	p.S159L	SMOC1_uc001xlt.1_Missense_Mutation_p.S159L	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	159					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CCTGTATGTTCAGGTACCGTA	0.527000													9	19					0	0	3.86212e-05	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713603	70713603	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:70713603C>T	uc010ttg.1	-	1	916	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NR_003951				SubName: Full=ADAM21-like protein;												0						TTCCAAATTTCAATTCCAATC	0.363000													20	48					0	0	9.7654e-05	0	0
DCAF4	26094	broad.mit.edu	37	14	73404716	73404717	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:73404716_73404717AC>TT	uc001xng.2	+	2	250_251	c.30_31AC>TT	c.(28-33)AGACGA>AGTTGA	p.10_11RR>S*	DCAF4_uc001xnj.2_Nonsense_Mutation_p.10_11RR>S*|DCAF4_uc010ttr.1_5'UTR|DCAF4_uc001xnh.2_Intron|DCAF4_uc010tts.1_Nonsense_Mutation_p.10_11RR>S*|DCAF4_uc010ttt.1_5'UTR|DCAF4_uc001xni.2_Nonsense_Mutation_p.10_11RR>S*|DCAF4_uc001xnk.2_Nonsense_Mutation_p.10_11RR>S*	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	10_11						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AGAGTAGAAGACGACATGGGAG	0.475000													57	119					0	0	6.4e-05	0	0
RBM25	58517	broad.mit.edu	37	14	73581037	73581037	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:73581037C>T	uc001xno.2	+	18	2643	c.2435C>T	c.(2434-2436)GCC>GTC	p.A812V	RBM25_uc010ttu.1_Missense_Mutation_p.A812V|RBM25_uc001xnp.2_Missense_Mutation_p.A607V	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	812	PWI.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		GATGATGTTGCCATGGTAAGT	0.184000													70	194					0	0	0.000147903	0	0
LTBP2	4053	broad.mit.edu	37	14	75078537	75078537	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:75078537C>T	uc001xqa.2	-	1	498	c.111G>A	c.(109-111)AGG>AGA	p.R37R		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	37					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CTACGGGGTCCCTTTGGGCAT	0.706000													15	37					0	0	0.000566183	0	0
ISM2	145501	broad.mit.edu	37	14	77951247	77951247	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:77951247C>T	uc001xtz.2	-	2	231	c.157G>A	c.(157-159)GAT>AAT	p.D53N	ISM2_uc001xua.2_Missense_Mutation_p.D53N|ISM2_uc001xty.2_5'UTR|ISM2_uc010tvl.1_Missense_Mutation_p.D53N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	53						extracellular region				skin(1)	1						GGCCTAGGATCTGGGGAGGCT	0.607000													39	80					0	0	0.000125731	0	0
KCNK10	54207	broad.mit.edu	37	14	88654351	88654351	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:88654351C>T	uc001xwo.2	-	6	1413	c.956G>A	c.(955-957)GGA>GAA	p.G319E	KCNK10_uc001xwm.2_Missense_Mutation_p.G324E|KCNK10_uc001xwn.2_Missense_Mutation_p.G324E	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	319	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TAGCCAATCTCCGATCATACT	0.478000													74	111					0	0	0.000147903	0	0
RIN3	79890	broad.mit.edu	37	14	93151488	93151488	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:93151488C>T	uc001yap.2	+	9	2776	c.2624C>T	c.(2623-2625)TCC>TTC	p.S875F	RIN3_uc010auk.2_Missense_Mutation_p.S537F|RIN3_uc001yaq.2_Missense_Mutation_p.S800F|RIN3_uc001yas.1_Missense_Mutation_p.S537F	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	875					endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				TCCCGCTCCTCCGTACAGGTG	0.672000													4	12					0	0	0.00024832	0	0
C14orf109	26175	broad.mit.edu	37	14	93652793	93652793	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:93652793C>T	uc010auo.2	+	2	645	c.287C>T	c.(286-288)TCC>TTC	p.S96F	MOAP1_uc001ybj.2_5'Flank|C14orf109_uc001ybk.3_Missense_Mutation_p.S58F	NM_001098621	NP_001092091	Q8N6I4	CN109_HUMAN	hypothetical protein LOC26175 isoform 1	90						integral to membrane					0		all_cancers(154;0.11)|Acute lymphoblastic leukemia(33;0.0488)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		TGGACACACTCCTTGAAAGCT	0.423000													22	64					0	0	0.000295444	0	0
AK7	122481	broad.mit.edu	37	14	96949417	96949417	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:96949417G>A	uc001yfn.2	+	16	1879	c.1835G>A	c.(1834-1836)GGT>GAT	p.G612D		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	612	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CGAAATTATGGTTTAACAGAC	0.507000													56	112					0	0	0.000147903	0	0
AK7	122481	broad.mit.edu	37	14	96953373	96953373	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:96953373G>A	uc001yfn.2	+	17	2157	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	705	DPY-30.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CGTCCGACCCGAAGACCCTGT	0.299000													38	90					0	0	0.000147903	0	0
MIR329-2	574409	broad.mit.edu	37	14	101493486	101493486	+	RNA	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:101493486G>A	hsa-mir-329-2|MI0001726	+			c.50G>A			MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank|hsa-mir-1193|MI0014205_5'Flank																	0						TATTGAGGACGAAACACACCT	0.458000													85	117					0	0	0.000147903	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418710	105418710	+	Silent	SNP	G	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:105418710G>T	uc010axc.1	-	7	3198	c.3078C>A	c.(3076-3078)CCC>CCA	p.P1026P	AHNAK2_uc001ypx.2_Silent_p.P926P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1026						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCTCCACCTTGGGTGCAGACA	0.577000													12	247					0.00010058	0.00156299	0.00010058	1	0
Unknown	0	broad.mit.edu	37	15	20362839	20362839	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:20362839G>A	uc001yte.1	+	1	152	c.101G>A	c.(100-102)GGA>GAA	p.G34E						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		AACAGCGAGGGAAATGTTGGA	0.498000													15	53					0	0	9.7654e-05	0	0
SLC12A6	9990	broad.mit.edu	37	15	34542930	34542930	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:34542930C>T	uc001zhw.2	-	11	1657	c.1493G>A	c.(1492-1494)GGT>GAT	p.G498D	SLC12A6_uc001zhv.2_Missense_Mutation_p.G447D|SLC12A6_uc001zhx.2_Missense_Mutation_p.G483D|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.G439D|SLC12A6_uc001zib.2_Missense_Mutation_p.G489D|SLC12A6_uc001zic.2_Missense_Mutation_p.G498D|SLC12A6_uc010bau.2_Missense_Mutation_p.G498D|SLC12A6_uc001zid.2_Missense_Mutation_p.G439D|SLC12A6_uc001zht.2_5'Flank|SLC12A6_uc001zhu.2_Missense_Mutation_p.G310D	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	498	Helical; (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	AGCCATGATACCTTTAGAGAT	0.403000													12	35					0	0	0.000151284	0	0
ACTC1	70	broad.mit.edu	37	15	35084474	35084474	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:35084474C>T	uc001ziu.1	-	5	868	c.625G>A	c.(625-627)GAA>AAA	p.E209K	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	209					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CGGACAATTTCACGTTCAGCT	0.468000													19	33					0	0	0.000229342	0	0
SPTBN5	51332	broad.mit.edu	37	15	42145866	42145866	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:42145866G>A	uc001zos.2	-	58	10122	c.9789C>T	c.(9787-9789)ACC>ACT	p.T3263T		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3298	Spectrin 29.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TCGCCTGCAGGGTGGCCCAGG	0.697000													5	31					0	0	0.000157383	0	0
MFAP1	4236	broad.mit.edu	37	15	44107265	44107265	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:44107265G>A	uc001zth.1	-	3	491	c.307C>T	c.(307-309)CGA>TGA	p.R103*		NM_005926	NP_005917	P55081	MFAP1_HUMAN	microfibrillar-associated protein 1	103						microfibril				skin(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.33e-07)		TTTCGATGTCGAGCCAATCTG	0.423000													17	39					0	0	7.07596e-05	0	0
USP8	9101	broad.mit.edu	37	15	50733667	50733667	+	Nonsense_Mutation	SNP	A	T	T	rs148744702		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:50733667A>T	uc001zym.3	+	4	726	c.226A>T	c.(226-228)AGA>TGA	p.R76*	USP8_uc001zyk.1_Translation_Start_Site|USP8_uc001zyl.3_Nonsense_Mutation_p.R76*|USP8_uc001zyn.3_Nonsense_Mutation_p.R76*|USP8_uc010ufh.1_Intron|USP8_uc010bev.1_Translation_Start_Site	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	76	MIT.				cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		TATCAAAAAAAGACCTGATTT	0.303000													15	32					0	0	0.000422831	0	0
LRRC49	54839	broad.mit.edu	37	15	71305224	71305224	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:71305224C>T	uc002asw.2	+	14	1922	c.1675C>T	c.(1675-1677)CGT>TGT	p.R559C	LRRC49_uc002asu.2_Missense_Mutation_p.R549C|LRRC49_uc002asx.2_Missense_Mutation_p.R515C|LRRC49_uc010ukf.1_Missense_Mutation_p.R564C|LRRC49_uc002asy.2_Missense_Mutation_p.R265C|LRRC49_uc002asz.2_Missense_Mutation_p.R531C	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	559						cytoplasm|microtubule				ovary(1)	1						ACCCCAGTATCGTCTGATTTC	0.363000													13	21					0	0	0.000151284	0	0
HCN4	10021	broad.mit.edu	37	15	73615110	73615110	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:73615110G>A	uc002avp.2	-	8	4318	c.3324C>T	c.(3322-3324)TCC>TCT	p.S1108S		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	1108	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		ACTCCCCTGAGGAGTGCGGGG	0.736000													3	6					0	0	6.4e-05	0	0
EDC3	80153	broad.mit.edu	37	15	74967399	74967400	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:74967399_74967400CC>AA	uc002ayn.2	-	5	554_555	c.66_67GG>TT	c.(64-69)CAGGGA>CATTGA	p.22_23QG>H*	EDC3_uc002ayo.2_Nonsense_Mutation_p.22_23QG>H*|EDC3_uc002aym.2_Nonsense_Mutation_p.22_23QG>H*	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	22_23	Required for P-body targeting and interaction with DCP1A (By similarity).				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						GACACTCTTCCCTGATAGACAC	0.490000													13	450					0	0	6.4e-05	0	0
SLC28A1	9154	broad.mit.edu	37	15	85438173	85438173	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:85438173C>T	uc002blg.2	+	6	482	c.280C>T	c.(280-282)CTC>TTC	p.L94F	SLC28A1_uc010upd.1_Missense_Mutation_p.L16F|SLC28A1_uc010bnb.2_Missense_Mutation_p.L94F|SLC28A1_uc010upe.1_Missense_Mutation_p.L94F|SLC28A1_uc010upf.1_Missense_Mutation_p.L94F|SLC28A1_uc010upg.1_Missense_Mutation_p.L94F|SLC28A1_uc002blf.2_Missense_Mutation_p.L94F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	94	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCCCCCAGGGCTCTCTGCCTT	0.647000													26	87					0	0	0.00058488	0	0
AKAP13	11214	broad.mit.edu	37	15	86259042	86259042	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:86259042C>T	uc002blv.1	+	20	5793	c.5623C>T	c.(5623-5625)CGG>TGG	p.R1875W	AKAP13_uc002blu.1_Missense_Mutation_p.R1879W|AKAP13_uc010bnf.1_Missense_Mutation_p.R496W|AKAP13_uc002blw.1_Missense_Mutation_p.R342W|AKAP13_uc002blx.1_Missense_Mutation_p.R120W	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1875					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GGAGCGTCCTCGGTCCGCAGT	0.532000													14	47					0	0	0.000151284	0	0
AGBL1	123624	broad.mit.edu	37	15	86940602	86940602	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:86940602C>T	uc002blz.1	+	17	2322	c.2242C>T	c.(2242-2244)CGT>TGT	p.R748C		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	748					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGCAGGACATCGTCCATATCA	0.398000													5	5					0	0	8.12818e-05	0	0
BLM	641	broad.mit.edu	37	15	91333954	91333955	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:91333954_91333955CC>AA	uc002bpr.2	+	15	2996_2997	c.2899_2900CC>AA	c.(2899-2901)CCT>AAT	p.P967N	BLM_uc010uqh.1_Missense_Mutation_p.P967N|BLM_uc010uqi.1_Missense_Mutation_p.P592N|BLM_uc010bnx.2_Missense_Mutation_p.P967N|BLM_uc002bps.1_Missense_Mutation_p.P529N	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	967	Helicase C-terminal.				double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TGCATCTCTCCCTAAATCTGTG	0.421000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				17	683					0	0	6.4e-05	0	0
MAN2A2	4122	broad.mit.edu	37	15	91450694	91450695	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:91450694_91450695CG>AT	uc010bnz.2	+	8	1280_1281	c.1165_1166CG>AT	c.(1165-1167)CGG>ATG	p.R389M	MAN2A2_uc010boa.2_Missense_Mutation_p.R431M|MAN2A2_uc002bqc.2_Missense_Mutation_p.R389M|MAN2A2_uc010uql.1_Missense_Mutation_p.R93M|MAN2A2_uc010uqm.1_Missense_Mutation_p.G36W	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	389	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGTGCCACCCCGGGCCATCACA	0.609000													9	469					0	0	6.4e-05	0	0
MAN2A2	4122	broad.mit.edu	37	15	91453440	91453441	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:91453440_91453441CG>AT	uc010bnz.2	+	10	1610_1611	c.1495_1496CG>AT	c.(1495-1497)CGG>ATG	p.R499M	MAN2A2_uc010boa.2_Missense_Mutation_p.R541M|MAN2A2_uc002bqc.2_Missense_Mutation_p.R499M|MAN2A2_uc010uql.1_Intron|MAN2A2_uc010uqm.1_Intron|MAN2A2_uc010uqn.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	499	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CTATGCGGACCGGGAGGATCAT	0.589000													9	566					0	0	6.4e-05	0	0
PRC1	9055	broad.mit.edu	37	15	91517390	91517391	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:91517390_91517391GG>TT	uc002bqm.2	-	11	1593_1594	c.1436_1437CC>AA	c.(1435-1437)CCC>CAA	p.P479Q	PRC1_uc002bqn.2_Missense_Mutation_p.P479Q|PRC1_uc002bqo.2_Missense_Mutation_p.P479Q|PRC1_uc010uqs.1_Missense_Mutation_p.P438Q	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	479	Unstructured, Arg/Lys rich.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CCGGTGTATTGGGAGCCAGTCC	0.495000													14	734					0	0	6.4e-05	0	0
PRC1	9055	broad.mit.edu	37	15	91523527	91523528	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:91523527_91523528CC>AA	uc002bqm.2	-	7	1071_1072	c.914_915GG>TT	c.(913-915)TGG>TTT	p.W305F	PRC1_uc002bqn.2_Missense_Mutation_p.W305F|PRC1_uc002bqo.2_Missense_Mutation_p.W305F|PRC1_uc010uqs.1_Missense_Mutation_p.W264F	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	305	Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					AGCACTGGTCCCAGTACTGAAC	0.406000													16	686					0	0	6.4e-05	0	0
SPATA8	145946	broad.mit.edu	37	15	97326971	97326971	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:97326971C>A	uc002bue.2	+	1	296	c.86C>A	c.(85-87)CCT>CAT	p.P29H	uc010uro.1_5'Flank|uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	29										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			CTGCCTTGTCCTAGGTATCTG	0.522000													24	33					8.24728e-16	1.29927e-14	9.22233e-05	1	0
SPATA8	145946	broad.mit.edu	37	15	97328286	97328286	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:97328286C>T	uc002bue.2	+	3	467	c.257C>T	c.(256-258)TCC>TTC	p.S86F	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	86										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			CCATCTGCTTCCCCACTGATT	0.453000													36	99					0	0	0.000132358	0	0
C15orf51	196968	broad.mit.edu	37	15	100332264	100332264	+	RNA	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:100332264C>T	uc010urx.1	-	5		c.1928G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GACTAGGGGCCAGTCTGTGAG	0.657000													11	50					0	0	6.40141e-05	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100591842	100591842	+	Missense_Mutation	SNP	G	T	T	rs141306868		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:100591842G>T	uc002bvv.1	-	17	2469	c.2390C>A	c.(2389-2391)CCG>CAG	p.P797Q		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	797					proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		AGAGTCCTGCGGTTTTTCTGG	0.512000													8	253					0.000442599	0.0068249	0.000442599	1	0
LRRK1	79705	broad.mit.edu	37	15	101569203	101569204	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:101569203_101569204CG>AT	uc002bwr.2	+	20	3048_3049	c.2729_2730CG>AT	c.(2728-2730)CCG>CAT	p.P910H	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	910					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCCATTTCCCGGACACCAGCC	0.550000													7	193					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	15	102292797	102292797	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:102292797C>G	uc010usj.1	+	4	444	c.385C>G	c.(385-387)CCA>GCA	p.P129A	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GAGCTGCTGTCCAACCTGCAC	0.597000													3	35					0	0	6.4e-05	0	0
CCDC78	124093	broad.mit.edu	37	16	774394	774394	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:774394C>G	uc002cjg.2	-	9	987	c.881G>C	c.(880-882)CGG>CCG	p.R294P	CCDC78_uc002cjf.2_Missense_Mutation_p.R143P|CCDC78_uc002cji.3_3'UTR|CCDC78_uc002cjj.3_3'UTR|CCDC78_uc002cjh.2_Missense_Mutation_p.R53P|CCDC78_uc010uuo.1_3'UTR|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	294										central_nervous_system(1)	1		Hepatocellular(780;0.0218)				GCGGGCAGCCCGGGCCAGCTG	0.682000													3	63					0	0	6.4e-05	0	0
C1QTNF8	390664	broad.mit.edu	37	16	1144728	1144728	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:1144728G>A	uc010uuw.1	-	3	469	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	65						collagen				skin(1)	1		Hepatocellular(780;0.00369)				TGAGGATTTCGATGTCTATAG	0.672000													18	15					0	0	9.7654e-05	0	0
RNPS1	10921	broad.mit.edu	37	16	2305647	2305647	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:2305647G>A	uc002cpt.2	-	7	1303	c.757C>T	c.(757-759)CCC>TCC	p.P253S	RNPS1_uc002cpu.2_Missense_Mutation_p.P253S|RNPS1_uc002cpv.2_Missense_Mutation_p.P76S|RNPS1_uc002cpw.2_Missense_Mutation_p.P253S|RNPS1_uc002cpx.2_Missense_Mutation_p.P230S|RNPS1_uc010uwa.1_RNA	NM_080594	NP_542161	Q15287	RNPS1_HUMAN	RNA-binding protein S1, serine-rich domain	253	Necessary for interaction with TRA2B, nuclear localization and exon-skipping.|Arg/Pro-rich.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|termination of RNA polymerase II transcription	cytosol|nuclear speck	mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(1)	1						ATTCTCCTGGGAGGGCTGAAT	0.572000													26	43					0	0	0.000147802	0	0
TNFRSF12A	51330	broad.mit.edu	37	16	3070469	3070469	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:3070469C>T	uc002csv.3	+	1	157	c.71C>T	c.(70-72)TCC>TTC	p.S24F	CLDN6_uc002csu.3_5'Flank|TNFRSF12A_uc002csw.3_Missense_Mutation_p.S24F	NM_016639	NP_057723	Q9NP84	TNR12_HUMAN	tumor necrosis factor receptor superfamily,	24					angiogenesis|apoptosis	integral to membrane	receptor activity				0						TTGCTGCGCTCCGTGGCCGGG	0.736000													4	17					0	0	0.00024832	0	0
THOC6	79228	broad.mit.edu	37	16	3076282	3076282	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:3076282C>T	uc002ctb.2	+	5	651	c.355C>T	c.(355-357)CCA>TCA	p.P119S	HCFC1R1_uc002csx.1_5'Flank|HCFC1R1_uc002csy.1_5'Flank|HCFC1R1_uc002csz.1_5'Flank|THOC6_uc002ctd.2_Missense_Mutation_p.P119S|THOC6_uc002ctc.2_Missense_Mutation_p.P95S|THOC6_uc002cta.2_Missense_Mutation_p.P95S	NM_024339	NP_077315	Q86W42	THOC6_HUMAN	WD repeat domain 58 isoform 1	119					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	RNA binding			ovary(1)|central_nervous_system(1)	2						TCGTCAGCCTCCATACAGGTG	0.577000													5	40					0	0	0.000157383	0	0
CARHSP1	23589	broad.mit.edu	37	16	8949060	8949060	+	Silent	SNP	G	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:8949060G>C	uc002czh.1	-	4	755	c.405C>G	c.(403-405)ACC>ACG	p.T135T	PMM2_uc002czg.1_RNA|CARHSP1_uc002czi.1_Silent_p.T135T	NM_001042476	NP_001035941	Q9Y2V2	CHSP1_HUMAN	calcium-regulated heat-stable protein 1	135					intracellular signal transduction|regulation of mRNA stability|regulation of transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|P granule	DNA binding|mRNA 3'-UTR binding|phosphatase binding				0						TCTCATGCTTGGTGCCTGGTG	0.567000													3	48					0	0	6.4e-05	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858416	9858416	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:9858416C>T	uc002czo.3	-	13	3533	c.2985G>A	c.(2983-2985)ACG>ACA	p.T995T	GRIN2A_uc010uym.1_Silent_p.T995T|GRIN2A_uc010uyn.1_Silent_p.T838T|GRIN2A_uc002czr.3_Silent_p.T995T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	995	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCACCTCCACCGTGTTAGGGT	0.498000													10	26					0	0	0.000442599	0	0
C16orf75	116028	broad.mit.edu	37	16	11444541	11444541	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:11444541C>T	uc002daw.1	+	2	356	c.338C>T	c.(337-339)CCT>CTT	p.P113L	C16orf75_uc002daq.1_RNA	NM_152308	NP_689521	Q96E14	RMI2_HUMAN	RecQ-mediated genome instability protein 2	113	OB.				DNA replication	nucleus	DNA binding				0						GCCTGCAGCCCTGAGCCCTGC	0.393000			T	CIITA	PMBL|Hodgkin Lymphona|								34	87					0	0	0.000228196	0	0
C16orf45	89927	broad.mit.edu	37	16	15609187	15609187	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:15609187G>A	uc002ddo.2	+	2	318	c.132G>A	c.(130-132)GCG>GCA	p.A44A	C16orf45_uc002ddp.2_Silent_p.A27A	NM_033201	NP_149978	Q96MC5	CP045_HUMAN	hypothetical protein LOC89927 isoform 1	44										ovary(1)	1						TCTCCATGGCGGAGACAACCA	0.547000													18	35					0	0	0.000229342	0	0
ERN2	10595	broad.mit.edu	37	16	23702489	23702489	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:23702489C>T	uc002dma.3	-	21	2842	c.2673G>A	c.(2671-2673)GGG>GGA	p.G891G	ERN2_uc010bxp.2_Silent_p.G839G	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	843	KEN.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		GCACTGATGTCCCCTTATAGG	0.617000													43	103					0	0	0.000147903	0	0
RBBP6	5930	broad.mit.edu	37	16	24581764	24581764	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:24581764C>T	uc002dmh.2	+	17	4793	c.3753C>T	c.(3751-3753)GTC>GTT	p.V1251V	RBBP6_uc010vcb.1_Silent_p.V1118V|RBBP6_uc002dmi.2_Silent_p.V1217V|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Silent_p.V1084V	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1251					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AAGGAAAGGTCAGACGAAAAG	0.413000													17	54					0	0	7.07596e-05	0	0
AMFR	267	broad.mit.edu	37	16	56436943	56436943	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:56436943G>A	uc002eiy.2	-	7	1133	c.928C>T	c.(928-930)CGT>TGT	p.R310C	AMFR_uc002eix.2_Silent_p.F7F	NM_001144	NP_001135	Q9UKV5	AMFR2_HUMAN	autocrine motility factor receptor	310					endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein oligomerization|protein polyubiquitination	integral to endoplasmic reticulum membrane|integral to membrane of membrane fraction	protein binding|protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			breast(2)	2						TTGTGCCGACGAATTCGACGT	0.428000													41	67					0	0	0.000509022	0	0
CDH8	1006	broad.mit.edu	37	16	61854894	61854894	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:61854894C>T	uc002eog.1	-	6	1211	c.959G>A	c.(958-960)GGA>GAA	p.G320E	CDH8_uc002eoh.2_Missense_Mutation_p.G89E	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	320	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		AAGTGCTGTTCCATCTCCATC	0.408000													4	5					0	0	0.00024832	0	0
DDX28	55794	broad.mit.edu	37	16	68056616	68056616	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr16:68056616G>A	uc002evh.1	-	1	1344	c.490C>T	c.(490-492)CGC>TGC	p.R164C	DUS2L_uc002evi.2_5'Flank|DUS2L_uc002evj.2_5'Flank|DUS2L_uc010vkk.1_5'Flank	NM_018380	NP_060850	Q9NUL7	DDX28_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	164	Helicase ATP-binding.					mitochondrial nucleoid|nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0116)|Epithelial(162;0.0474)|all cancers(182;0.233)		TGGCGGCCGCGAAGTAGTGAG	0.642000													11	25					0	0	6.40141e-05	0	0
KIAA0664	23277	broad.mit.edu	37	17	2603696	2603696	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:2603696G>A	uc002fuy.1	-	9	1218	c.1132C>T	c.(1132-1134)CGA>TGA	p.R378*	KIAA0664_uc002fux.1_Nonsense_Mutation_p.R310*	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	378							binding			breast(2)	2						GCCCTTTCTCGGAGCAGCCGC	0.602000													5	25					0	0	0.000602214	0	0
OR1E1	8387	broad.mit.edu	37	17	3301419	3301419	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:3301419C>T	uc002fvj.1	-	1	286	c.286G>A	c.(286-288)GAC>AAC	p.D96N		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCAGGCAGTCCGCATAGGGG	0.522000													16	26					0	0	0.000566183	0	0
ZZEF1	23140	broad.mit.edu	37	17	3954306	3954306	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:3954306G>A	uc002fxe.2	-	36	5696	c.5632C>T	c.(5632-5634)CCA>TCA	p.P1878S	ZZEF1_uc002fxh.2_Missense_Mutation_p.P192S|ZZEF1_uc002fxi.2_Missense_Mutation_p.P113S|ZZEF1_uc002fxj.1_Missense_Mutation_p.P491S	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1878							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GTTACCATTGGGTGGGCCGTG	0.517000													14	101					0	0	0.000422831	0	0
PITPNM3	83394	broad.mit.edu	37	17	6387073	6387073	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:6387073C>T	uc002gdd.3	-	6	503	c.352_splice	c.e6-1	p.E118_splice	PITPNM3_uc010cln.2_Splice_Site_p.E82_splice|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1						phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		GGCAGCCTTCCTGAGAGCCAA	0.537000													19	14					0	0	9.7654e-05	0	0
USP43	124739	broad.mit.edu	37	17	9632267	9632267	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:9632267C>T	uc010cod.2	+	15	3332	c.3332C>T	c.(3331-3333)TCT>TTT	p.S1111F	USP43_uc002gma.3_Missense_Mutation_p.S800F|USP43_uc010vva.1_Missense_Mutation_p.S1106F|USP43_uc010coe.2_Missense_Mutation_p.S908F|USP43_uc002gmc.3_Missense_Mutation_p.S623F	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	1111					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CACACTCTTTCTTTAGGTCGA	0.507000											OREG0024168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	154					0	0	0.000339439	0	0
TOM1L2	146691	broad.mit.edu	37	17	17797059	17797059	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:17797059G>A	uc002grz.3	-	4	439	c.282C>T	c.(280-282)TTC>TTT	p.F94F	TOM1L2_uc002gry.3_Intron|TOM1L2_uc010vwy.1_Silent_p.F94F|TOM1L2_uc010cpr.2_Silent_p.F94F|TOM1L2_uc010vwz.1_Intron|TOM1L2_uc010vxa.1_Silent_p.F94F|TOM1L2_uc010vxb.1_Intron	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3	94	VHS.				intracellular protein transport	intracellular					0	all_neural(463;0.228)					CACTGTCGATGAAATCTCGGT	0.517000													12	65					0	0	0.000151284	0	0
SLC13A2	9058	broad.mit.edu	37	17	26818751	26818751	+	Silent	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:26818751C>A	uc002hbh.2	+	6	826	c.759C>A	c.(757-759)CTC>CTA	p.L253L	SLC13A2_uc010wal.1_Silent_p.L210L|SLC13A2_uc010wam.1_Silent_p.L209L|SLC13A2_uc010wan.1_Silent_p.L302L|SLC13A2_uc010wao.1_Silent_p.L210L|SLC13A2_uc002hbi.2_Silent_p.L182L	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	253						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCTTCAGGCTCTTCCCCCAAA	0.602000													15	70					6.72482e-11	1.05527e-09	0.000308642	1	0
TP53I13	90313	broad.mit.edu	37	17	27899038	27899038	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:27899038C>T	uc002hee.2	+	5	514	c.476C>T	c.(475-477)CCC>CTC	p.P159L		NM_138349	NP_612358	Q8NBR0	P5I13_HUMAN	tumor protein p53 inducible protein 13	159	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane					0				READ - Rectum adenocarcinoma(3;0.236)		GAGCCAACTCCCGGTAGAGGG	0.622000													28	23					0	0	0.000227799	0	0
AMAC1	146861	broad.mit.edu	37	17	33520358	33520358	+	Silent	SNP	A	G	G	rs74740601	by1000genomes	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:33520358A>G	uc002hjd.2	-	1	1055	c.969T>C	c.(967-969)ATT>ATC	p.I323I		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	323	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		TCTGGGCTGTAATGATGGCAA	0.547000													5	126					0	0	3.59834e-05	0	0
AMAC1	146861	broad.mit.edu	37	17	33520392	33520392	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:33520392G>C	uc002hjd.2	-	1	1021	c.935C>G	c.(934-936)GCG>GGG	p.A312G		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	312	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AACCCCTGCCGCCACGATGTC	0.567000													5	192					0	0	8.12818e-05	0	0
ACACA	31	broad.mit.edu	37	17	35583356	35583357	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:35583356_35583357CC>AA	uc002hnm.2	-	26	3343_3344	c.3152_3153GG>TT	c.(3151-3153)CGG>CTT	p.R1051L	ACACA_uc002hnk.2_Missense_Mutation_p.R973L|ACACA_uc002hnl.2_Missense_Mutation_p.R993L|ACACA_uc002hnn.2_Missense_Mutation_p.R1051L|ACACA_uc002hno.2_Missense_Mutation_p.R1088L|ACACA_uc010cuz.2_Missense_Mutation_p.R1051L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1051					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GAGTAGGGTCCCGGCCACACAA	0.396000													11	311					0	0	6.4e-05	0	0
SRCIN1	80725	broad.mit.edu	37	17	36708983	36708983	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:36708983C>T	uc002hqd.2	-	12	2535	c.2310G>A	c.(2308-2310)GGG>GGA	p.G770G	SRCIN1_uc002hqf.1_Silent_p.G642G|SRCIN1_uc002hqe.2_Silent_p.G624G|SRCIN1_uc002hqg.2_Silent_p.G76G	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	642	Potential.				exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						TCAGCGTCTCCCCGAGCTGCT	0.617000													52	36					0	0	0.000147903	0	0
TNS4	84951	broad.mit.edu	37	17	38640807	38640807	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:38640807G>A	uc010cxb.2	-	6	1594	c.1430C>T	c.(1429-1431)TCT>TTT	p.S477F		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	477	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			TCGGTATGAAGAGCTGTCCCT	0.582000													41	31					0	0	0.000437636	0	0
KRT20	54474	broad.mit.edu	37	17	39036116	39036116	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:39036116C>T	uc002hvl.2	-	5	909	c.867G>A	c.(865-867)CTG>CTA	p.L289L		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	289	Rod.|Coil 2.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				AGGTGCGTCTCAGCTCCGTTA	0.413000													41	46					0	0	0.000147903	0	0
KRT34	3885	broad.mit.edu	37	17	39537356	39537356	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:39537356C>T	uc002hwm.2	-	3	678	c.666G>A	c.(664-666)GTG>GTA	p.V222V		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	222	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				TCAGGGACTCCACCTGGGACT	0.537000													15	110					0	0	7.07596e-05	0	0
AOC3	8639	broad.mit.edu	37	17	41004022	41004022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:41004022G>A	uc002ibv.2	+	1	822	c.662G>A	c.(661-663)GGG>GAG	p.G221E		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	221	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	CTGCAATCAGGGGACCGGGCC	0.612000													6	36					0	0	8.12818e-05	0	0
HDAC5	10014	broad.mit.edu	37	17	42156583	42156583	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:42156583C>T	uc002ifd.1	-	24	3218	c.3007G>A	c.(3007-3009)GAG>AAG	p.E1003K	HDAC5_uc002ife.1_Missense_Mutation_p.E1003K|HDAC5_uc002iff.1_Missense_Mutation_p.E1004K|HDAC5_uc010czp.1_Missense_Mutation_p.E918K	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	1003	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		TGGCCTCCCTCCAGGGCCAGC	0.547000													29	26					0	0	0.000117367	0	0
C17orf46	124783	broad.mit.edu	37	17	43332772	43332772	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:43332772G>A	uc002iis.1	-	4	873	c.777C>T	c.(775-777)CCC>CCT	p.P259P	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Silent_p.P238P	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	259										large_intestine(1)|ovary(1)	2						GTTCCAAACTGGGCAGGTCCA	0.587000													30	27					0	0	0.000227799	0	0
Unknown	0	broad.mit.edu	37	17	43625862	43625863	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:43625862_43625863CC>AA	uc002ijh.2	-	1	262_263	c.141_142GG>TT	c.(139-144)CTGGGA>CTTTGA	p.G48*	uc010wjv.1_Intron					Homo sapiens cDNA FLJ45049 fis, clone BRAWH3022347.																		ATGGTAAGTCCCAGGTCCAAAA	0.495000													10	259					0	0	6.4e-05	0	0
LRRC46	90506	broad.mit.edu	37	17	45913763	45913763	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:45913763T>C	uc002ima.2	+	7	773	c.517T>C	c.(517-519)TGG>CGG	p.W173R	LRRC46_uc002imb.2_Missense_Mutation_p.W126R	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	173	LRRCT.									ovary(1)	1						GGTGGAGCGCTGGATTTCGGA	0.592000													28	22					0	0	0.000279167	0	0
TTLL6	284076	broad.mit.edu	37	17	46846367	46846367	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:46846367C>T	uc010wlo.1	-	16	2695	c.2660G>A	c.(2659-2661)GGA>GAA	p.G887E	TTLL6_uc002iob.2_Missense_Mutation_p.G580E|TTLL6_uc010dbi.2_Intron|TTLL6_uc002ioc.2_Missense_Mutation_p.G640E|TTLL6_uc002iod.2_Intron	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	839						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CCTCTCACATCCTTTTTGGCC	0.498000													36	52					0	0	0.000270559	0	0
SPOP	8405	broad.mit.edu	37	17	47684678	47684678	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:47684678G>A	uc010dbk.2	-	9	1403	c.771C>T	c.(769-771)TTC>TTT	p.F257F	SPOP_uc002ipb.2_Silent_p.F257F|SPOP_uc002ipc.2_Silent_p.F257F|SPOP_uc002ipd.2_Silent_p.F257F|SPOP_uc002ipe.2_Silent_p.F257F|SPOP_uc002ipf.2_Silent_p.F257F|SPOP_uc002ipg.2_Silent_p.F257F	NM_003563	NP_003554	O43791	SPOP_HUMAN	speckle-type POZ protein	257	BTB.				mRNA processing	nucleus	protein binding			prostate(2)|ovary(2)|lung(2)	6						CCGTGTAAATGAAGCACATCA	0.393000										Prostate(2;0.17)			18	20					0	0	0.000132079	0	0
HEATR6	63897	broad.mit.edu	37	17	58147098	58147098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:58147098C>T	uc002iyk.1	-	7	930	c.913G>A	c.(913-915)GAA>AAA	p.E305K	HEATR6_uc010wos.1_Missense_Mutation_p.E137K	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	305							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			GCACTGGATTCTGATTGCTGT	0.403000													21	134					0	0	0.000175454	0	0
TBX2	6909	broad.mit.edu	37	17	59482937	59482937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:59482937G>A	uc010wox.1	+	6	1707	c.1426G>A	c.(1426-1428)GGG>AGG	p.G476R	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Missense_Mutation_p.G322R	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	476	Gly-rich.				cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						CCACTTGCACGGGCAGCAGTT	0.701000													6	25					0	0	0.000157383	0	0
MED13	9969	broad.mit.edu	37	17	60107290	60107291	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:60107290_60107291CC>AA	uc002izo.2	-	7	1170_1171	c.1093_1094GG>TT	c.(1093-1095)GGG>TTG	p.G365L	MED13_uc002izp.2_5'UTR	NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	365					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GGGTATTTTCCCACCATGGTGG	0.381000													7	108					0	0	6.4e-05	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342363	60342363	+	RNA	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:60342363C>G	uc010woz.1	-	14		c.1766G>C				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						GCCATGAGCCCTGGCCCAGAT	0.493000													7	134					0	0	0.000308642	0	0
ACE	1636	broad.mit.edu	37	17	61559936	61559936	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:61559936C>T	uc002jau.1	+	8	1250	c.1228C>T	c.(1228-1230)CGG>TGG	p.R410W	ACE_uc010wpi.1_Missense_Mutation_p.R410W|ACE_uc010ddu.1_Missense_Mutation_p.R227W|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	410	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CTCCCTGCGTCGGGGGGCCAA	0.607000													13	144					0	0	0.000422831	0	0
CD79B	974	broad.mit.edu	37	17	62007586	62007586	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:62007586T>C	uc002jdq.1	-	3	361	c.278A>G	c.(277-279)AAG>AGG	p.K93R	CD79B_uc002jdo.1_Missense_Mutation_p.K67R|CD79B_uc002jdp.1_Missense_Mutation_p.K94R|CD79B_uc002jdr.1_Intron	NM_000626	NP_000617	P40259	CD79B_HUMAN	CD79B antigen isoform 1 precursor	93	Extracellular (Potential).|Ig-like V-type.				cell surface receptor linked signaling pathway|immune response	Golgi apparatus|integral to plasma membrane|nucleus	transmembrane receptor activity				0						CATGCGGCCCTTTTCCAGCTT	0.552000			Mis|O		DLBCL								3	104					0	0	0.000602214	0	0
SCN4A	6329	broad.mit.edu	37	17	62020202	62020202	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:62020202G>A	uc002jds.1	-	23	4349	c.4272C>T	c.(4270-4272)GTC>GTT	p.V1424V		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1424	Helical; Name=S3 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TGGACAGGATGACGACCACGA	0.602000													8	38					0	0	0.000274275	0	0
SEPT9	10801	broad.mit.edu	37	17	75398448	75398449	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:75398448_75398449CC>TT	uc002jts.3	+	3	510_511	c.384_385CC>TT	c.(382-387)TCCCGG>TCTTGG	p.R129W	SEPT9_uc010wtk.1_Missense_Mutation_p.R110W|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Missense_Mutation_p.R111W|SEPT9_uc002jtv.2_Missense_Mutation_p.R122W|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	129					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			TCGGCCCGTCCCGGTTCGGGCT	0.678000													25	16					0	0	6.4e-05	0	0
BAHCC1	57597	broad.mit.edu	37	17	79428154	79428154	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:79428154C>T	uc002kaf.2	+	24	6465	c.6465C>T	c.(6463-6465)GCC>GCT	p.A2155A	BAHCC1_uc002kae.2_Silent_p.A1385A	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	2155							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			GCTTCCGCGCCGACTCCTTCA	0.692000													4	16					0	0	0.000602214	0	0
METRNL	284207	broad.mit.edu	37	17	81052056	81052056	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:81052056C>T	uc002kgh.2	+	4	797	c.672C>T	c.(670-672)GCC>GCT	p.A224A	METRNL_uc002kgi.2_Silent_p.A142A	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	224						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			AGGACTCAGCCATCCACCTGC	0.652000													82	73					0	0	0.000147903	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996016	19996016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr18:19996016C>T	uc002ktv.1	-	1	1863	c.1759G>A	c.(1759-1761)GCT>ACT	p.A587T		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	587						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGAGGGAGAGCTGAATCAGGA	0.473000													21	42					0	0	0.000295444	0	0
DSC3	1825	broad.mit.edu	37	18	28605779	28605779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr18:28605779C>T	uc002kwj.3	-	5	732	c.577G>A	c.(577-579)GGA>AGA	p.G193R	DSC3_uc002kwi.3_Missense_Mutation_p.G193R	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	193	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			AATAGATTTCCAGTGTCTCTT	0.333000													7	23					0	0	8.12818e-05	0	0
KIAA0427	9811	broad.mit.edu	37	18	46146061	46146061	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr18:46146061C>T	uc002ldc.2	+	2	410	c.125C>T	c.(124-126)GCT>GTT	p.A42V	KIAA0427_uc002ldd.2_Missense_Mutation_p.A42V	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	42	Interaction with NCBP1/CBP80.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						GGGCTGCTGGCTGACAAGACG	0.662000													5	9					0	0	3.59834e-05	0	0
AZU1	566	broad.mit.edu	37	19	829624	829624	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:829624C>T	uc002lpz.1	+	3	294	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001700	NP_001691	P20160	CAP7_HUMAN	azurocidin 1 preproprotein	93	Peptidase S1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cellular extravasation|defense response to Gram-negative bacterium|glial cell migration|induction of positive chemotaxis|inflammatory response|macrophage chemotaxis|microglial cell activation|monocyte activation|positive regulation of cell adhesion|positive regulation of fractalkine biosynthetic process|positive regulation of interleukin-1 beta biosynthetic process|positive regulation of MHC class II biosynthetic process|positive regulation of phagocytosis|positive regulation of tumor necrosis factor biosynthetic process|proteolysis|regulation of vascular permeability	azurophil granule|extracellular region	heparin binding|serine-type endopeptidase activity|toxin binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGAGGCAGTCCCGCCAGACG	0.617000													13	60					0	0	0.000219431	0	0
REXO1	57455	broad.mit.edu	37	19	1827447	1827447	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:1827447C>T	uc002lua.3	-	2	1436	c.1341G>A	c.(1339-1341)GGG>GGA	p.G447G	REXO1_uc010dsr.1_Silent_p.G401G	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	447						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCCCTTTCCCTGAGGTGG	0.741000													5	15					0	0	0.000602214	0	0
JSRP1	126306	broad.mit.edu	37	19	2252666	2252666	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:2252666C>T	uc002lvi.1	-	6	693	c.658G>A	c.(658-660)GGA>AGA	p.G220R	JSRP1_uc002lvj.1_Missense_Mutation_p.G220R	NM_144616	NP_653217	Q96MG2	JSPR1_HUMAN	junctional sarcoplasmic reticulum protein 1	220						sarcoplasmic reticulum membrane				pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGGCCTCTCCGGTGGCCTCG	0.711000													39	85					0	0	0.000374591	0	0
PLIN4	729359	broad.mit.edu	37	19	4511995	4511995	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:4511995G>A	uc002mar.1	-	3	1935	c.1935C>T	c.(1933-1935)ATC>ATT	p.I645I	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	645	27 X 33 AA approximate tandem repeat.|17.					lipid particle|plasma membrane					0						TACCTGTCGCGATATTTTGGG	0.572000													35	62					0	0	0.000491102	0	0
PLIN5	440503	broad.mit.edu	37	19	4523746	4523747	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:4523746_4523747CC>GT	uc002mas.2	-	8	1238_1239	c.1185_1186GG>AC	c.(1183-1188)CTGGTG>CTACTG	p.V396L		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	396						lipid particle					0						ACCTCGTCCACCAGGTCCGCCA	0.728000													18	45					0	0	6.4e-05	0	0
PTPRS	5802	broad.mit.edu	37	19	5212148	5212148	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:5212148C>T	uc002mbv.2	-	32	5117	c.4883G>A	c.(4882-4884)CGC>CAC	p.R1628H	PTPRS_uc002mbu.1_Missense_Mutation_p.R1197H|PTPRS_uc010xin.1_Missense_Mutation_p.R1170H|PTPRS_uc002mbw.2_Missense_Mutation_p.R1590H|PTPRS_uc002mbx.2_Missense_Mutation_p.R1185H|PTPRS_uc002mby.2_Missense_Mutation_p.R1181H	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1628	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		CATGTAGTTGCGCTGGGACCT	0.602000													15	67					0	0	0.000308642	0	0
FUT5	2527	broad.mit.edu	37	19	5867530	5867530	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:5867530C>T	uc002mdo.3	-	2	295	c.207G>A	c.(205-207)GCG>GCA	p.A69A	FUT5_uc010duo.2_Silent_p.A69A	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	69	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						GGGCAGGGGTCGCCATGCTGT	0.667000													10	43					0	0	0.000151284	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841477	8841477	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:8841477C>T	uc010xkg.1	+	1	87	c.87C>T	c.(85-87)TCC>TCT	p.S29S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						TCCTCTTCTCCCTGGTGGCTG	0.537000													17	25					0	0	7.07596e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9073985	9073985	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:9073985G>A	uc002mkp.2	-	3	13665	c.13461C>T	c.(13459-13461)ACC>ACT	p.T4487T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4489	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGTCCAGAGGTAAGAACTG	0.458000													10	14					0	0	0.000219431	0	0
OR7D4	125958	broad.mit.edu	37	19	9325039	9325039	+	Missense_Mutation	SNP	G	A	A	rs140587334		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:9325039G>A	uc002mla.1	-	1	475	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.H159Y(1)		ovary(2)|central_nervous_system(1)|skin(1)	4						AGTAGAATATGAACCAGGGAG	0.522000													14	32					0	0	0.000151284	0	0
FBXW9	84261	broad.mit.edu	37	19	12800923	12800924	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:12800923_12800924GG>AA	uc010dyx.2	-	6	944_945	c.944_945CC>TT	c.(943-945)GCC>GTT	p.A315V	FBXW9_uc010xmp.1_RNA|uc002mul.1_3'UTR|FBXW9_uc002mum.1_Missense_Mutation_p.A295V|FBXW9_uc002mun.1_Missense_Mutation_p.A132V	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	325							protein binding			ovary(1)	1						GGGCTGGGCCGGCTTCATGGGT	0.639000													25	55					0	0	6.4e-05	0	0
OR10H1	26539	broad.mit.edu	37	19	15918635	15918635	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:15918635G>A	uc002nbq.2	-	1	302	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGGTGTAGAGGATCTCGGAGA	0.642000													17	10					0	0	7.07596e-05	0	0
ARMC6	93436	broad.mit.edu	37	19	19162882	19162883	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:19162882_19162883GG>AA	uc002nld.2	+	5	1079_1080	c.731_732GG>AA	c.(730-732)TGG>TAA	p.W244*	ARMC6_uc002nlc.2_Nonsense_Mutation_p.W219*|ARMC6_uc010xql.1_Nonsense_Mutation_p.W151*|ARMC6_uc002nle.2_Nonsense_Mutation_p.W219*|ARMC6_uc010xqm.1_Nonsense_Mutation_p.W244*	NM_033415	NP_219483	Q6NXE6	ARMC6_HUMAN	armadillo repeat containing 6	244	ARM 1.						protein binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.66e-06)|Epithelial(12;0.000391)			GAAGCCTGCTGGGCCCTGCGTG	0.579000													5	36					0	0	6.4e-05	0	0
NCAN	1463	broad.mit.edu	37	19	19339082	19339082	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:19339082C>T	uc002nlz.2	+	8	2752	c.2653C>T	c.(2653-2655)CCA>TCA	p.P885S	NCAN_uc010ecc.1_Missense_Mutation_p.P449S	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	885					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGTTGGAGTTCCAGCCATGTC	0.602000													14	57					0	0	0.000219431	0	0
FCGBP	8857	broad.mit.edu	37	19	40421209	40421209	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:40421209C>T	uc002omp.3	-	5	2720	c.2712G>A	c.(2710-2712)CGG>CGA	p.R904R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	904	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCACCAGCACCCGGAAGGCAG	0.682000													4	19					0	0	0.00024832	0	0
AKT2	208	broad.mit.edu	37	19	40743886	40743886	+	Missense_Mutation	SNP	C	G	G	rs121434593		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:40743886C>G	uc002onf.2	-	9	1083	c.821G>C	c.(820-822)CGC>CCC	p.R274P	AKT2_uc010egs.2_Missense_Mutation_p.R274P|AKT2_uc010egt.2_Missense_Mutation_p.R212P|AKT2_uc010xvj.1_Missense_Mutation_p.R212P|AKT2_uc010egu.1_Missense_Mutation_p.R212P|AKT2_uc002one.2_Missense_Mutation_p.R170P	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	274	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CTTGATGTCGCGGTATACCAC	0.597000			A		ovarian|pancreatic 								36	63					0	0	0.000191422	0	0
PSG3	5671	broad.mit.edu	37	19	43242965	43242966	+	Missense_Mutation	DNP	CG	AT	AT	rs149473391	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:43242965_43242966CG>AT	uc002oue.2	-	2	472_473	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.R136M	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	114	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATTC	0.460000													13	371					0	0	6.4e-05	0	0
PSG5	5673	broad.mit.edu	37	19	43680036	43680036	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:43680036G>A	uc002ovu.2	-	3	826	c.695C>T	c.(694-696)ACC>ATC	p.T232I	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.T232I|PSG5_uc002ovv.2_Missense_Mutation_p.T325I|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	232	Ig-like C2-type 1.			T -> S (in Ref. 2; AAA60205 and 3; AAA36514).	female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GACATTCAGGGTGACTGGGTC	0.498000													11	30					0	0	3.86212e-05	0	0
BCAM	4059	broad.mit.edu	37	19	45317959	45317959	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:45317959G>A	uc002ozu.2	+	8	1064	c.1020G>A	c.(1018-1020)GAG>GAA	p.E340E	BCAM_uc002ozt.1_Silent_p.E340E	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	340	Extracellular (Potential).|Ig-like C2-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GCAGAGTGGAGGATTACGACG	0.647000													142	294					0	0	0.000147903	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49344564	49344564	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:49344564G>A	uc002pkx.2	-	17	2298	c.1747C>T	c.(1747-1749)CCG>TCG	p.P583S	PLEKHA4_uc002pkw.1_Missense_Mutation_p.P98S|PLEKHA4_uc010eml.2_Intron	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	583						cytoplasm|membrane	1-phosphatidylinositol binding	p.P583P(1)		ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		CGGGCCACCGGGGCCTAGGGA	0.478000													9	26					0	0	3.86212e-05	0	0
PRR12	57479	broad.mit.edu	37	19	50105142	50105142	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:50105142C>T	uc002poo.3	+	6	4740	c.4740C>T	c.(4738-4740)TTC>TTT	p.F1580F		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	759							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GGGACGAGTTCGTCATCCGTG	0.567000													6	38					0	0	3.59834e-05	0	0
CPT1C	126129	broad.mit.edu	37	19	50200690	50200690	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:50200690G>A	uc002ppj.2	+	3	454	c.249G>A	c.(247-249)CTG>CTA	p.L83L	CPT1C_uc002ppl.3_Silent_p.L83L|CPT1C_uc002ppi.2_5'UTR|CPT1C_uc002ppk.2_Silent_p.L83L|CPT1C_uc010eng.2_Silent_p.L83L|CPT1C_uc010enh.2_Silent_p.L83L|CPT1C_uc010ybc.1_5'UTR	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	83	Mitochondrial intermembrane (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CCTTAGGACTGATGGAGAAGA	0.557000													19	89					0	0	0.000295444	0	0
SIGLECP3	284367	broad.mit.edu	37	19	51671524	51671524	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:51671524C>T	uc010ycv.1	+	3	673	c.663C>T	c.(661-663)ATC>ATT	p.I221I	SIGLECP3_uc010ycu.1_Silent_p.I221I|SIGLECP3_uc002pvy.3_Silent_p.I221I|SIGLECP3_uc002pvz.3_Silent_p.I221I					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						TGCTCACGATCATCCCACGGC	0.632000													8	20					0	0	0.000442599	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920407	51920407	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:51920407A>G	uc002pwo.2	-	2	966	c.350T>C	c.(349-351)TTC>TCC	p.F117S	SIGLEC10_uc002pwp.2_Missense_Mutation_p.F117S|SIGLEC10_uc002pwq.2_Missense_Mutation_p.F117S|SIGLEC10_uc002pwr.2_Missense_Mutation_p.F117S|SIGLEC10_uc010ycy.1_Missense_Mutation_p.F117S|SIGLEC10_uc010ycz.1_Missense_Mutation_p.F117S|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Missense_Mutation_p.F101S	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	117	Extracellular (Potential).|Ig-like V-type.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CACCCGAAAGAAGTACTGTGA	0.527000													25	52					0	0	0.00047179	0	0
ZNF480	147657	broad.mit.edu	37	19	52817502	52817502	+	Silent	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:52817502T>C	uc010ydl.1	+	3	239	c.169T>C	c.(169-171)TTG>CTG	p.L57L	ZNF480_uc002pyv.2_Intron|ZNF480_uc010ydm.1_Silent_p.L57L|ZNF480_uc010epn.2_Intron|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	57	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GGATGTGATGTTGGAGAACTA	0.522000													9	26					0	0	0.000442599	0	0
ZNF610	162963	broad.mit.edu	37	19	52869869	52869869	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:52869869T>C	uc002pyx.3	+	6	1644	c.1238T>C	c.(1237-1239)TTA>TCA	p.L413S	ZNF610_uc002pyy.3_Missense_Mutation_p.L413S|ZNF610_uc002pyz.3_Missense_Mutation_p.L370S|ZNF610_uc002pza.2_Missense_Mutation_p.L413S	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	413	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		GGGCGCAAATTATACCTAACC	0.423000													14	34					0	0	0.000308642	0	0
NLRP7	199713	broad.mit.edu	37	19	55450542	55450542	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:55450542C>T	uc002qih.3	-	4	1721	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	NLRP7_uc002qig.3_Missense_Mutation_p.E549K|NLRP7_uc002qii.3_Missense_Mutation_p.E549K|NLRP7_uc010esk.2_Missense_Mutation_p.E549K|NLRP7_uc010esl.2_Missense_Mutation_p.E577K	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	549							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TGCAGCAATTCCTGTTTGATG	0.512000													14	59					0	0	0.000308642	0	0
PTPRH	5794	broad.mit.edu	37	19	55707899	55707899	+	Missense_Mutation	SNP	C	T	T	rs145253735	by1000genomes	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:55707899C>T	uc002qjq.2	-	10	2321	c.2248G>A	c.(2248-2250)GAG>AAG	p.E750K	PTPRH_uc010esv.2_Missense_Mutation_p.E572K|PTPRH_uc002qjs.2_Missense_Mutation_p.E757K	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	750	Extracellular (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CCTGCACTCTCGGTGTGGCAG	0.597000													17	44					0	0	0.000229342	0	0
NLRP11	204801	broad.mit.edu	37	19	56321664	56321664	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:56321664G>A	uc010ygf.1	-	5	1023	c.312C>T	c.(310-312)TTC>TTT	p.F104F	NLRP11_uc002qlz.2_Silent_p.F5F|NLRP11_uc002qmb.2_Silent_p.F5F|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	104							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ATTGCAGCATGAATTTTCTCC	0.368000													6	20					0	0	8.12818e-05	0	0
ZNF470	388566	broad.mit.edu	37	19	57089571	57089571	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:57089571C>T	uc002qnl.3	+	6	2450	c.1774C>T	c.(1774-1776)CCG>TCG	p.P592S	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	592					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TGGCAAAAGACCGTATGAATG	0.428000													5	26					0	0	0.000602214	0	0
USP29	57663	broad.mit.edu	37	19	57640991	57640991	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:57640991A>C	uc002qny.2	+	4	1304	c.948A>C	c.(946-948)CAA>CAC	p.Q316H		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	316					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TACTCACTCAAGGTGTCCCAT	0.413000													17	47					0	0	0.000132079	0	0
DUXA	503835	broad.mit.edu	37	19	57666693	57666693	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr19:57666693C>T	uc002qoa.1	-	5	531	c.486G>A	c.(484-486)AGG>AGA	p.R162R		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	162						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CCACAGGTTCCCTTTTTCTCT	0.413000													13	70					0	0	0.000566183	0	0
SNTG2	54221	broad.mit.edu	37	2	1079206	1079206	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:1079206G>A	uc002qwq.2	+	2	203	c.75G>A	c.(73-75)ACG>ACA	p.T25T	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Silent_p.T25T	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	25					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		CCCTACAGACGAAAACCACTA	0.478000													12	117					0	0	0.000308642	0	0
SNTG2	54221	broad.mit.edu	37	2	1161240	1161240	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:1161240C>T	uc002qwq.2	+	7	546	c.418C>T	c.(418-420)CTG>TTG	p.L140L	SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	140	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ACAGGTGCATCTGCTGAGAAA	0.433000													37	83					0	0	0.000374591	0	0
NTSR2	23620	broad.mit.edu	37	2	11800205	11800205	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:11800205A>G	uc002rbq.3	-	3	1027	c.953T>C	c.(952-954)CTC>CCC	p.L318P		NM_012344	NP_036476	O95665	NTR2_HUMAN	neurotensin receptor 2	318	Helical; Name=6; (Potential).				sensory perception	integral to plasma membrane					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.129)|OV - Ovarian serous cystadenocarcinoma(76;0.24)	Levocabastine(DB01106)	GCAGTACATGAGCCTGCGGGC	0.592000													3	68					0	0	0.00024832	0	0
C2orf16	84226	broad.mit.edu	37	2	27804235	27804235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:27804235C>T	uc002rkz.3	+	1	4847	c.4796C>T	c.(4795-4797)TCC>TTC	p.S1599F	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1599	1.|27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AAAAACCATTCCAGTCCTTCT	0.552000													8	64					0	0	0.000442599	0	0
PLB1	151056	broad.mit.edu	37	2	28865849	28865849	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:28865849C>T	uc002rmb.1	+	58	4299	c.4299C>T	c.(4297-4299)ATC>ATT	p.I1433I	PLB1_uc010ezj.1_Silent_p.I1422I|PLB1_uc002rme.1_Silent_p.I398I|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1433	Necessary for membrane localization (By similarity).|Helical; (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TGGGCATCATCGGGACAGTGG	0.662000													7	16					0	0	0.000157383	0	0
FAM179A	165186	broad.mit.edu	37	2	29259496	29259496	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:29259496C>T	uc010ezl.2	+	18	2859	c.2508C>T	c.(2506-2508)CTC>CTT	p.L836L	FAM179A_uc010ymm.1_Silent_p.L781L|FAM179A_uc002rmr.3_Silent_p.L363L|FAM179A_uc002rms.1_Silent_p.L134L	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	836							binding			ovary(3)|skin(1)	4						TGATCCCCCTCCTCAGAGAGA	0.517000													17	49					0	0	0.000566183	0	0
XDH	7498	broad.mit.edu	37	2	31573079	31573079	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:31573079C>T	uc002rnv.1	-	25	2721	c.2642G>A	c.(2641-2643)CGA>CAA	p.R881Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	881		Substrate.		R->M: Abolishes xanthine oxidase activity.	purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GAATAAAGCTCGTTCCATAAT	0.498000													7	29					0	0	8.12818e-05	0	0
THADA	63892	broad.mit.edu	37	2	43808964	43808965	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:43808964_43808965CC>AA	uc002rsw.3	-	8	988_989	c.636_637GG>TT	c.(634-639)CAGGGA>CATTGA	p.212_213QG>H*	THADA_uc002rsx.3_Nonsense_Mutation_p.212_213QG>H*|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Nonsense_Mutation_p.212_213QG>H*|THADA_uc002rtc.3_Nonsense_Mutation_p.212_213QG>H*|THADA_uc002rtd.2_Nonsense_Mutation_p.212_213QG>H*	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	212_213							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CAAAGATTTCCCTGGAAATCTT	0.351000													14	453					0	0	6.4e-05	0	0
LRPPRC	10128	broad.mit.edu	37	2	44201358	44201359	+	Missense_Mutation	DNP	GG	TT	TT	rs150044060		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:44201358_44201359GG>TT	uc002rtr.2	-	9	1143_1144	c.1085_1086CC>AA	c.(1084-1086)CCC>CAA	p.P362Q	LRPPRC_uc010yob.1_Missense_Mutation_p.P262Q|LRPPRC_uc010faw.1_Missense_Mutation_p.P336Q	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	362					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTTTGATACGGGGCATGCTAG	0.371000													17	579					0	0	6.4e-05	0	0
EPAS1	2034	broad.mit.edu	37	2	46574202	46574202	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:46574202G>A	uc002ruv.2	+	2	705	c.217G>A	c.(217-219)GTT>ATT	p.V73I		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	73					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CCTCTCCTCAGGTAAGGCCAG	0.592000													11	48					0	0	0.00010058	0	0
BCL11A	53335	broad.mit.edu	37	2	60687937	60687938	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:60687937_60687938CG>AT	uc002sae.1	-	4	2337_2338	c.2109_2110CG>AT	c.(2107-2112)CCCGGG>CCATGG	p.G704W	BCL11A_uc002sab.2_Missense_Mutation_p.G704W|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.G373W|BCL11A_uc010ypj.1_Missense_Mutation_p.G670W|BCL11A_uc002sad.1_Missense_Mutation_p.G552W|BCL11A_uc002saf.1_Missense_Mutation_p.G670W	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	704					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TCCAGCTCCCCGGGCGGTGTGG	0.639000			T	IGH@	B-CLL								8	272					0	0	6.4e-05	0	0
BCL11A	53335	broad.mit.edu	37	2	60773237	60773237	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:60773237G>T	uc002sae.1	-	2	482	c.254C>A	c.(253-255)CCT>CAT	p.P85H	BCL11A_uc002sab.2_Missense_Mutation_p.P85H|BCL11A_uc002sac.2_Missense_Mutation_p.P85H|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Missense_Mutation_p.P85H|BCL11A_uc002saf.1_Missense_Mutation_p.P85H|BCL11A_uc010fcg.2_Missense_Mutation_p.P85H	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	85	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGAAGGGGAAGGTGGCTTATC	0.463000			T	IGH@	B-CLL								235	505					2.09913e-134	3.31348e-133	0.000147903	1	0
USP34	9736	broad.mit.edu	37	2	61528582	61528582	+	Silent	SNP	G	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:61528582G>C	uc002sbe.2	-	28	3847	c.3825C>G	c.(3823-3825)CTC>CTG	p.L1275L		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1275					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CAGGTCCCATGAGGCCTCCTT	0.348000													3	158					0	0	6.4e-05	0	0
ACTR2	10097	broad.mit.edu	37	2	65492226	65492226	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:65492226C>T	uc002sdq.2	+	8	1146	c.931C>T	c.(931-933)CCT>TCT	p.P311S	ACTR2_uc010yqf.1_Missense_Mutation_p.P256S|ACTR2_uc002sdp.2_Missense_Mutation_p.P316S|ACTR2_uc010yqg.1_Missense_Mutation_p.P259S	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	311					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						TACTATGTATCCTGGCCTGCC	0.383000													50	110					0	0	0.000147903	0	0
POLR1A	25885	broad.mit.edu	37	2	86266579	86266580	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:86266579_86266580CC>AA	uc002sqs.2	-	26	4125_4126	c.3746_3747GG>TT	c.(3745-3747)CGG>CTT	p.R1249L	POLR1A_uc010ytb.1_Missense_Mutation_p.R615L|POLR1A_uc002sqt.1_Missense_Mutation_p.R272L	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1249					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TGAGAATCTCCCGCAACCTGTC	0.500000													9	298					0	0	6.4e-05	0	0
NCAPH	23397	broad.mit.edu	37	2	97007508	97007508	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:97007508C>T	uc002svz.1	+	2	232	c.148C>T	c.(148-150)CCA>TCA	p.P50S	NCAPH_uc010fhu.1_Missense_Mutation_p.P26S|NCAPH_uc010fhv.1_Missense_Mutation_p.P39S|NCAPH_uc010yum.1_Missense_Mutation_p.P26S|NCAPH_uc010fhw.1_Missense_Mutation_p.P39S|NCAPH_uc010yun.1_Intron|NCAPH_uc002swa.1_Intron	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	50					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				TCCTGGCACCCCAGTCCTCGA	0.597000													28	66					0	0	0.000227799	0	0
AFF3	3899	broad.mit.edu	37	2	100210626	100210627	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:100210626_100210627CG>AT	uc002tag.2	-	14	1732_1733	c.1496_1497CG>AT	c.(1495-1497)CCG>CAT	p.P499H	AFF3_uc002taf.2_Missense_Mutation_p.P524H|AFF3_uc010fiq.1_Missense_Mutation_p.P499H|AFF3_uc010yvr.1_Missense_Mutation_p.P652H|AFF3_uc002tah.1_Missense_Mutation_p.P524H	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	499					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCTCTTTCACCGGGTTGTAGTA	0.515000													11	294					0	0	6.4e-05	0	0
ANKRD57	65124	broad.mit.edu	37	2	110373044	110373044	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:110373044C>T	uc002tfb.2	+	1	1134	c.978C>T	c.(976-978)AAC>AAT	p.N326N	SEPT10_uc010ywu.1_5'Flank|SEPT10_uc002tew.2_5'Flank|SEPT10_uc002tex.2_5'Flank|SEPT10_uc002tey.2_5'Flank|SEPT10_uc010ywv.1_5'Flank	NM_023016	NP_075392	Q53LP3	ANR57_HUMAN	ankyrin repeat domain 57	326	ANK 1.										0						ACTTCGCCAACAAACACCAGC	0.627000													20	50					0	0	0.00047179	0	0
DPP10	57628	broad.mit.edu	37	2	116594278	116594278	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:116594278G>A	uc002tla.1	+	24	2595	c.2138G>A	c.(2137-2139)GGC>GAC	p.G713D	DPP10_uc002tlb.1_Missense_Mutation_p.G663D|DPP10_uc002tlc.1_Missense_Mutation_p.G709D|DPP10_uc002tle.2_Missense_Mutation_p.G717D|DPP10_uc002tlf.1_Missense_Mutation_p.G706D	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	713	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AATGTTCATGGCTTGAAAGAA	0.313000													79	181					0	0	0.000147903	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125262126	125262126	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:125262126C>T	uc002tno.2	+	8	1681	c.1317C>T	c.(1315-1317)ATC>ATT	p.I439I	CNTNAP5_uc010flu.2_Silent_p.I440I	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	439	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TAGCTGAAATCCTCACAGGTA	0.498000													3	5					0	0	0.00024832	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539526	133539526	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:133539526C>T	uc002ttp.2	-	14	5232	c.4858G>A	c.(4858-4860)GAA>AAA	p.E1620K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1620							protein binding				0						TTCAAGAGTTCCGTCATGAAG	0.448000													46	65					0	0	0.000147903	0	0
NR4A2	4929	broad.mit.edu	37	2	157182748	157182748	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:157182748G>A	uc002tyz.3	-	7	1876	c.1454C>T	c.(1453-1455)TCC>TTC	p.S485F	NR4A2_uc002tyx.3_Missense_Mutation_p.S422F|NR4A2_uc010zcf.1_Missense_Mutation_p.S485F|NR4A2_uc010zcg.1_Intron	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	485					cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TTCAACAATGGAATCAATCCA	0.488000													22	56					0	0	0.000117367	0	0
NR4A2	4929	broad.mit.edu	37	2	157183340	157183340	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:157183340G>A	uc002tyz.3	-	6	1673	c.1251C>T	c.(1249-1251)ATC>ATT	p.I417I	NR4A2_uc002tyx.3_Silent_p.I354I|NR4A2_uc010zcf.1_Silent_p.I417I|NR4A2_uc010zcg.1_Silent_p.I39I	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	417	Ligand-binding (Potential).				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CCCAGCCCCGGATGATCTCCA	0.502000													60	158					0	0	0.000147903	0	0
SCN9A	6335	broad.mit.edu	37	2	167162385	167162385	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:167162385G>A	uc010fpl.2	-	5	854	c.513C>T	c.(511-513)ATC>ATT	p.I171I	SCN9A_uc002udr.1_Silent_p.I42I|SCN9A_uc002uds.1_Silent_p.I42I|SCN9A_uc002udt.1_Silent_p.I42I	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	171	I.|Helical; Name=S2 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTCTTGCAAGGATTTTTACAA	0.378000													16	45					0	0	0.000308642	0	0
DLX2	1746	broad.mit.edu	37	2	172966256	172966256	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:172966256C>T	uc002uhn.2	-	2	731	c.519G>A	c.(517-519)AAG>AAA	p.K173K	DLX2_uc010zdx.1_Silent_p.K173K	NM_004405	NP_004396	Q07687	DLX2_HUMAN	distal-less homeobox 2	173	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.216)			AGTATTGAGTCTTTTGGAAAC	0.617000													17	26					0	0	7.07596e-05	0	0
PDE1A	5136	broad.mit.edu	37	2	183099217	183099217	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:183099217C>T	uc002uos.2	-	5	491	c.407G>A	c.(406-408)CGA>CAA	p.R136Q	PDE1A_uc010zfp.1_Missense_Mutation_p.R32Q|PDE1A_uc002uoq.1_Missense_Mutation_p.R136Q|PDE1A_uc010zfq.1_Missense_Mutation_p.R136Q|PDE1A_uc002uor.2_Missense_Mutation_p.R120Q|PDE1A_uc002uou.2_Missense_Mutation_p.R102Q	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	136					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			ATATGTTTTTCGGTACATTCT	0.269000													28	51					0	0	0.000279167	0	0
SF3B1	23451	broad.mit.edu	37	2	198265476	198265476	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:198265476T>C	uc002uue.2	-	18	2729	c.2681A>G	c.(2680-2682)GAT>GGT	p.D894G		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	894					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			AAGAATACCATCAATCAGTTG	0.333000													12	25					0	0	0.000219431	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203820418	203820419	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:203820418_203820419GG>TT	uc002uzo.2	+	7	859_860	c.579_580GG>TT	c.(577-582)CTGGGG>CTTTGG	p.G194W	ALS2CR8_uc002uzn.2_Missense_Mutation_p.G92W|ALS2CR8_uc002uzm.2_Missense_Mutation_p.G194W|ALS2CR8_uc010zhy.1_Missense_Mutation_p.G194W|ALS2CR8_uc010zhz.1_RNA|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.G118W|ALS2CR8_uc010zib.1_Missense_Mutation_p.G118W|ALS2CR8_uc010zic.1_Missense_Mutation_p.G106W|ALS2CR8_uc002uzp.2_Missense_Mutation_p.G194W	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	194										large_intestine(1)|ovary(1)	2						AACCCCTTCTGGGGCCTCTTCA	0.396000													14	543					0	0	6.4e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174295	207174295	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:207174295G>A	uc002vbp.2	+	5	5293	c.5043G>A	c.(5041-5043)CAG>CAA	p.Q1681Q		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1681							nucleic acid binding|zinc ion binding			ovary(3)	3						ACCGACTGCAGAAAGCTCACA	0.413000													7	31					0	0	0.000157383	0	0
ABCA12	26154	broad.mit.edu	37	2	215890504	215890504	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:215890504C>T	uc002vew.2	-	11	1401	c.1181_splice	c.e11-1	p.E394_splice	ABCA12_uc002vev.2_Splice_Site_p.E76_splice|ABCA12_uc010zjn.1_Splice_Site	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12						cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTAGATTTTCTGTAAAGGAA	0.358000													30	60					0	0	0.000227799	0	0
TTLL4	9654	broad.mit.edu	37	2	219614105	219614105	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:219614105C>T	uc002viy.2	+	14	3100	c.2730C>T	c.(2728-2730)TCC>TCT	p.S910S	TTLL4_uc010zkl.1_Silent_p.S745S|TTLL4_uc010fvx.2_Silent_p.S846S|TTLL4_uc010zkm.1_Silent_p.S113S	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	910	TTL.				protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TCAACATTTCCCCAAGGTAGG	0.438000													13	27					0	0	0.000308642	0	0
SPEG	10290	broad.mit.edu	37	2	220354160	220354160	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:220354160T>G	uc010fwg.2	+	36	8420	c.8420T>G	c.(8419-8421)CTA>CGA	p.L2807R		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2807	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCCCCACCCCTAGCTCCTGCT	0.662000													4	33					0	0	0.000602214	0	0
COL6A3	1293	broad.mit.edu	37	2	238303547	238303547	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:238303547G>C	uc002vwl.2	-	3	677	c.392C>G	c.(391-393)ACC>AGC	p.T131S	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.T131S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	131	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGCAGCCTTGGTGAGGTGGCT	0.483000													7	66					0	0	8.12818e-05	0	0
CPXM1	56265	broad.mit.edu	37	20	2775247	2775247	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:2775247G>A	uc002wgu.2	-	13	1963	c.1899C>T	c.(1897-1899)GAC>GAT	p.D633D	CPXM1_uc010gas.2_Silent_p.D559D	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	633					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						CAAGCTCCGTGTCCTTGTCCC	0.423000													34	77					0	0	0.000509022	0	0
VPS16	64601	broad.mit.edu	37	20	2843493	2843494	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:2843493_2843494CC>AA	uc002whe.2	+	13	1292_1293	c.1244_1245CC>AA	c.(1243-1245)CCC>CAA	p.P415Q	VPS16_uc002whh.2_RNA|PTPRA_uc002whj.2_5'Flank|VPS16_uc002whf.2_Intron|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.P101Q|VPS16_uc002whi.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	415					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						AGATTTCCACCCGACAGCTTCG	0.589000													10	263					0	0	6.4e-05	0	0
CHGB	1114	broad.mit.edu	37	20	5903925	5903925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:5903925G>A	uc002wmg.2	+	4	1441	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K	CHGB_uc010zqz.1_Missense_Mutation_p.E62K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	379						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						TCAGAGTGAGGAGAGTTGGGA	0.532000													19	59					0	0	0.000175454	0	0
ZNF341	84905	broad.mit.edu	37	20	32369172	32369172	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:32369172C>T	uc002wzy.2	+	11	1718	c.1698C>T	c.(1696-1698)TTC>TTT	p.F566F	ZNF341_uc002wzx.2_Silent_p.F559F|ZNF341_uc010geq.2_Silent_p.F476F|ZNF341_uc010ger.2_Intron	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	566	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTCACAACTTCCCCTGCCCAC	0.577000													37	65					0	0	0.000228196	0	0
PROCR	10544	broad.mit.edu	37	20	33764014	33764014	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:33764014C>T	uc002xbt.2	+	3	550	c.366C>T	c.(364-366)CCC>CCT	p.P122P	EDEM2_uc010zuv.1_Intron|PROCR_uc010zuw.1_Silent_p.P159P	NM_006404	NP_006395	Q9UNN8	EPCR_HUMAN	endothelial protein C receptor precursor	122	Extracellular (Potential).				antigen processing and presentation|blood coagulation|immune response	integral to plasma membrane|MHC class I protein complex	receptor activity				0			BRCA - Breast invasive adenocarcinoma(18;0.0152)		Drotrecogin alfa(DB00055)	AGCTGCCTCCCGAGGGCTCTA	0.612000													21	137					0	0	9.22233e-05	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37547165	37547165	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:37547165G>A	uc002xje.2	+	11	1749	c.1560G>A	c.(1558-1560)TTG>TTA	p.L520L	PPP1R16B_uc010ggc.2_Silent_p.L478L	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	520					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGGCCCCCTTGATCGGAGGCA	0.597000													13	41					0	0	0.000219431	0	0
SERINC3	10955	broad.mit.edu	37	20	43138550	43138550	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:43138550G>A	uc002xme.2	-	5	729	c.595C>T	c.(595-597)CCA>TCA	p.P199S	SERINC3_uc002xmf.1_Missense_Mutation_p.P199S|SERINC3_uc010ggs.1_Missense_Mutation_p.P192S|SERINC3_uc010zwp.1_Missense_Mutation_p.P144S	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	199	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			CACAACCTTGGGTTTCCTTCT	0.443000													49	55					0	0	0.000147903	0	0
PABPC1L	80336	broad.mit.edu	37	20	43545421	43545422	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:43545421_43545422CG>AT	uc010ggv.1	+	3	494_495	c.412_413CG>AT	c.(412-414)CGG>ATG	p.R138M	PABPC1L_uc010zwq.1_RNA	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	138	RRM 2.						nucleotide binding|RNA binding			ovary(1)	1						GCATGGCTCCCGGGGTTTCGGC	0.559000													7	274					0	0	6.4e-05	0	0
WFDC2	10406	broad.mit.edu	37	20	44108723	44108723	+	Missense_Mutation	SNP	C	T	T	rs147125152		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:44108723C>T	uc002xoo.2	+	3	393	c.365C>T	c.(364-366)CCC>CTC	p.P122L	WFDC2_uc002xoq.2_RNA|WFDC2_uc002xop.2_Missense_Mutation_p.P74L|WFDC2_uc002xor.2_Missense_Mutation_p.P71L	NM_006103	NP_006094	Q14508	WFDC2_HUMAN	WAP four-disulfide core domain 2 precursor	122	WAP 2.				proteolysis|spermatogenesis	extracellular space	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGTGTCACTCCCAATTTCTGA	0.567000													46	66					0	0	0.000147903	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48699408	48699408	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:48699408G>A	uc002xvf.2	-	8	1171	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L	UBE2V1_uc002xvb.2_RNA|UBE2V1_uc002xva.2_Missense_Mutation_p.S114L|UBE2V1_uc002xvc.2_Missense_Mutation_p.S70L|UBE2V1_uc002xvd.2_Missense_Mutation_p.S137L|UBE2V1_uc002xve.2_Missense_Mutation_p.S137L	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	114					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			GATGCTATATGAATTCTGCCA	0.423000													38	124					0	0	0.000132358	0	0
FAM65C	140876	broad.mit.edu	37	20	49224937	49224937	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:49224937C>T	uc002xvm.2	-	11	1251	c.933G>A	c.(931-933)GAG>GAA	p.E311E	FAM65C_uc010zyt.1_Silent_p.E315E|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.E311E	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	311										ovary(2)	2						TCCACTGCACCTCCAGCTGCA	0.652000													32	39					0	0	0.000109025	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872316	51872316	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:51872316G>A	uc002xwo.2	+	2	3275	c.2319G>A	c.(2317-2319)AAG>AAA	p.K773K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	773					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CCAAAAGCAAGAAAGCCGAGT	0.557000													32	108					0	0	0.00058488	0	0
CASS4	57091	broad.mit.edu	37	20	55012333	55012333	+	Silent	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:55012333T>C	uc002xxp.2	+	3	375	c.150T>C	c.(148-150)GGT>GGC	p.G50G	CASS4_uc002xxq.3_Silent_p.G50G|CASS4_uc002xxr.2_Silent_p.G50G|CASS4_uc010zze.1_Silent_p.G50G|CASS4_uc010gio.2_Silent_p.G50G	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	50	SH3.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AAAGCGAGGGTTGGTGGAAGT	0.607000													42	58					0	0	0.000147903	0	0
NPEPL1	79716	broad.mit.edu	37	20	57269626	57269626	+	Missense_Mutation	SNP	C	A	A	rs139042887	by1000genomes	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:57269626C>A	uc010zzs.1	+	3	580	c.485C>A	c.(484-486)CCG>CAG	p.P162Q	NPEPL1_uc010zzr.1_Missense_Mutation_p.P114Q|NPEPL1_uc002xzn.2_RNA|NPEPL1_uc010gjo.1_Missense_Mutation_p.P134Q|NPEPL1_uc002xzp.2_Missense_Mutation_p.P50Q	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	aminopeptidase-like 1	162					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity				0	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			GACAACGGGCCGGTGGAGGTG	0.652000													14	18					1.49906e-05	0.000234774	0.000219431	1	0
DIDO1	11083	broad.mit.edu	37	20	61511484	61511484	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:61511484G>A	uc002ydr.1	-	16	6088	c.5824C>T	c.(5824-5826)CCC>TCC	p.P1942S	DIDO1_uc002yds.1_Missense_Mutation_p.P1942S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1942	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AACTGGTTGGGATGAGGGCCC	0.587000													49	162					0	0	0.000147903	0	0
DIDO1	11083	broad.mit.edu	37	20	61525513	61525514	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr20:61525513_61525514GG>AA	uc002ydr.1	-	12	2869_2870	c.2605_2606CC>TT	c.(2605-2607)CCG>TTG	p.P869L	DIDO1_uc002yds.1_Missense_Mutation_p.P869L|DIDO1_uc002ydt.1_Missense_Mutation_p.P869L|DIDO1_uc002ydu.1_Missense_Mutation_p.P869L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	869					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TTGTTTTTTCGGAGCTGGCTCA	0.505000													43	180					0	0	6.4e-05	0	0
TTC3	7267	broad.mit.edu	37	21	38568329	38568329	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr21:38568329T>G	uc002yvz.2	+	42	5676	c.5571T>G	c.(5569-5571)TGT>TGG	p.C1857W	TTC3_uc002ywa.2_Missense_Mutation_p.C1857W|TTC3_uc002ywb.2_Missense_Mutation_p.C1857W|TTC3_uc010gnf.2_Missense_Mutation_p.C1622W|TTC3_uc002ywc.2_Missense_Mutation_p.C1547W	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1857					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TATTCCCATGTTACAACAGGT	0.423000													5	38					0	0	3.59834e-05	0	0
DSCAM	1826	broad.mit.edu	37	21	41414391	41414392	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr21:41414391_41414392CG>TT	uc002yyq.1	-	32	6044_6045	c.5592_5593CG>AA	c.(5590-5595)TCCGAA>TCAAAA	p.E1865K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1865	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATTCCCGATTCGGAAGGGGTGC	0.535000													19	78					0	0	6.4e-05	0	0
FAM3B	54097	broad.mit.edu	37	21	42720632	42720632	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr21:42720632C>T	uc002yzb.1	+	7	745	c.599C>T	c.(598-600)TCC>TTC	p.S200F	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Missense_Mutation_p.S152F|FAM3B_uc002yzd.1_Missense_Mutation_p.S223F	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	200					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				GAACTCCCTTCCGAAATTCAG	0.423000													25	53					0	0	0.000147802	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													4	11					0	0	0.000602214	0	0
LOC96610	96610	broad.mit.edu	37	22	22677150	22677150	+	RNA	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:22677150C>T	uc011aim.1	+	36		c.3190C>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CCAGCAGCTCCCAGGAACAGC	0.542000													84	74					0	0	0.000147903	0	0
SGSM1	129049	broad.mit.edu	37	22	25251323	25251323	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:25251323G>A	uc003abg.2	+	7	752	c.595G>A	c.(595-597)GAA>AAA	p.E199K	SGSM1_uc003abh.2_Missense_Mutation_p.E199K|SGSM1_uc010guu.1_Missense_Mutation_p.E199K|SGSM1_uc003abj.2_Missense_Mutation_p.E199K|SGSM1_uc003abi.1_Missense_Mutation_p.E174K|SGSM1_uc003abf.2_Missense_Mutation_p.E199K	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	199						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CTCGGCTGACGAACTTGTCCA	0.627000													19	12					0	0	0.000132079	0	0
DUSP18	150290	broad.mit.edu	37	22	31059613	31059613	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:31059613G>A	uc003aiu.2	-	2	879	c.378C>T	c.(376-378)TCC>TCT	p.S126S	SLC35E4_uc003ait.2_Intron|DUSP18_uc010gwa.1_RNA|DUSP18_uc003aiw.1_Silent_p.S126S	NM_152511	NP_689724	Q8NEJ0	DUS18_HUMAN	dual specificity phosphatase 18	126	Tyrosine-protein phosphatase.					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0						CGTCCAGCAGGGACATGGCGT	0.587000													5	65					0	0	0.000602214	0	0
RANGAP1	5905	broad.mit.edu	37	22	41660752	41660752	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:41660752G>A	uc003azs.2	-	4	1866	c.396C>T	c.(394-396)TTC>TTT	p.F132F	RANGAP1_uc003azt.2_Silent_p.F132F|RANGAP1_uc003azu.2_Silent_p.F132F|RANGAP1_uc011aoz.1_Silent_p.F122F	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	132	LRR 2.				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						GCAGGGCCTCGAAGCCTTGCA	0.617000													9	51					0	0	0.000274275	0	0
MOV10L1	54456	broad.mit.edu	37	22	50598106	50598107	+	Splice_Site	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr22:50598106_50598107GG>AA	uc003bjj.2	+	24	3300	c.3217_splice	c.e24-1	p.V1073_splice	MOV10L1_uc003bjk.3_Splice_Site_p.V1073_splice|MOV10L1_uc011arp.1_Splice_Site_p.V1053_splice|MOV10L1_uc003bjl.2_Splice_Site_p.V200_splice	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1						germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CTGTTCTCAAGGTGGAGAAAAT	0.262000													15	48					0	0	6.4e-05	0	0
CHL1	10752	broad.mit.edu	37	3	407753	407753	+	Missense_Mutation	SNP	G	A	A	rs138000940	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:407753G>A	uc003bou.2	+	14	1929	c.1658G>A	c.(1657-1659)AGT>AAT	p.S553N	CHL1_uc003bot.2_Missense_Mutation_p.S569N|CHL1_uc003bow.1_Missense_Mutation_p.S553N|CHL1_uc011asi.1_Missense_Mutation_p.S569N|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	553	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTGTCCTGGAGTAAAGATGGA	0.368000													7	18					0	0	0.000274275	0	0
HRH1	3269	broad.mit.edu	37	3	11301470	11301470	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:11301470G>A	uc010hdr.2	+	2	1089	c.747G>A	c.(745-747)AAG>AAA	p.K249K	HRH1_uc010hds.2_Silent_p.K249K|HRH1_uc010hdt.2_Silent_p.K249K|HRH1_uc003bwb.3_Silent_p.K249K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	249	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GGGATGCCAAGAAACCAGGGA	0.542000													7	21					0	0	0.000157383	0	0
ACAA1	30	broad.mit.edu	37	3	38167171	38167171	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:38167171G>A	uc003cht.2	-	11	1291	c.1084C>T	c.(1084-1086)CCC>TCC	p.P362S	ACAA1_uc003chu.2_Missense_Mutation_p.P269S|ACAA1_uc010hgy.2_Missense_Mutation_p.P321S|ACAA1_uc010hgz.2_Intron|ACAA1_uc003chv.2_Missense_Mutation_p.P210S	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	362					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		TTCTCAGGGGGGAGTCGTAGC	0.622000													10	22					0	0	0.000442599	0	0
ULK4	54986	broad.mit.edu	37	3	41860970	41860970	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:41860970C>G	uc003ckv.3	-	19	1994	c.1793G>C	c.(1792-1794)TGC>TCC	p.C598S	ULK4_uc003ckw.2_Missense_Mutation_p.C598S	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	598							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AACAGCCCAGCACTCTCTAGG	0.433000													10	17					0	0	0.000151284	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817435	45817435	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:45817435C>T	uc011bai.1	-	4	524	c.400G>A	c.(400-402)GGC>AGC	p.G134S	SLC6A20_uc011baj.1_Missense_Mutation_p.G134S	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	134	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TCATCGTAGCCCGTGTGGTTA	0.567000													23	72					0	0	0.000184323	0	0
TLR9	54106	broad.mit.edu	37	3	52255864	52255864	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:52255864A>G	uc003dda.1	-	2	3102	c.2468T>C	c.(2467-2469)CTG>CCG	p.L823P	TLR9_uc003ddb.2_Missense_Mutation_p.L920P	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	823	Helical; (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CACAGCCAGCAGCGAGAGGGC	0.657000													9	13					0	0	0.000442599	0	0
MORC1	27136	broad.mit.edu	37	3	108723946	108723946	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:108723946C>T	uc003dxl.2	-	19	2071	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	MORC1_uc011bhn.1_Missense_Mutation_p.E641K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	662					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTGACATTTTCTGGCAGAGCT	0.348000													37	49					0	0	0.000319135	0	0
SLC9A10	285335	broad.mit.edu	37	3	111950327	111950327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:111950327C>T	uc003dyu.2	-	13	1675	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.E437K	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	485					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GTTTCTTCTTCGTTCAACTAA	0.333000													6	7					0	0	3.59834e-05	0	0
KALRN	8997	broad.mit.edu	37	3	124420920	124420920	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:124420920G>A	uc003ehg.2	+	57	8159	c.8032G>A	c.(8032-8034)GAA>AAA	p.E2678K	KALRN_uc003ehk.2_Missense_Mutation_p.E981K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2677					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTCTTGGAAGGAAAATTTTGA	0.358000													18	50					0	0	0.000229342	0	0
PLXND1	23129	broad.mit.edu	37	3	129293200	129293200	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:129293200G>A	uc003emx.2	-	12	2764	c.2664C>T	c.(2662-2664)TGC>TGT	p.C888C		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	888	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CGGGGGCGGGGCAGGTGCCAG	0.697000													4	8					0	0	0.00024832	0	0
EPHB1	2047	broad.mit.edu	37	3	134898763	134898763	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:134898763C>T	uc003eqt.2	+	10	2041	c.1821C>T	c.(1819-1821)GTC>GTT	p.V607V	EPHB1_uc003equ.2_Silent_p.V168V	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	607	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						ACGAAGCTGTCCGGGAGTTTG	0.483000													38	72					0	0	0.000228196	0	0
A4GNT	51146	broad.mit.edu	37	3	137843566	137843567	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:137843566_137843567CG>AT	uc003ers.2	-	3	764_765	c.562_563CG>AT	c.(562-564)CGG>ATG	p.R188M		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	188	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						ACTAGAGTACCGAGAAGCCTGC	0.495000													25	600					0	0	6.4e-05	0	0
DBR1	51163	broad.mit.edu	37	3	137892381	137892382	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:137892381_137892382GG>TT	uc003erv.2	-	2	420_421	c.284_285CC>AA	c.(283-285)CCC>CAA	p.P95Q	DBR1_uc003eru.2_Missense_Mutation_p.P44Q	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	95						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						AGCCACCATAGGGTAACTCTTG	0.421000													14	768					0	0	6.4e-05	0	0
ESYT3	83850	broad.mit.edu	37	3	138170908	138170908	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:138170908G>A	uc003esk.2	+	2	572	c.346G>A	c.(346-348)GAG>AAG	p.E116K	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	116						integral to membrane|plasma membrane					0						CCCGGACGTGGAGCGGGTCGA	0.672000													44	210					0	0	0.000147903	0	0
SR140	23350	broad.mit.edu	37	3	142769799	142769799	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:142769799C>T	uc003evh.1	+	25	2662	c.2563C>T	c.(2563-2565)CAG>TAG	p.Q855*	SR140_uc003evi.1_Nonsense_Mutation_p.Q446*|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Nonsense_Mutation_p.Q854*|SR140_uc003evl.1_Nonsense_Mutation_p.Q422*	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	855	Potential.|Glu-rich.				RNA processing	nucleus	nucleotide binding|RNA binding				0						TATGAAGTTTCAGGATGAATT	0.333000													11	52					0	0	6.40141e-05	0	0
ACTL6A	86	broad.mit.edu	37	3	179287645	179287645	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:179287645C>T	uc003fjw.2	+	2	232	c.59C>T	c.(58-60)TCC>TTC	p.S20F	ACTL6A_uc003fjx.2_5'UTR|ACTL6A_uc003fjy.2_5'UTR	NM_004301	NP_004292	O96019	ACL6A_HUMAN	actin-like 6A isoform 1	20					chromatin remodeling|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|nervous system development|regulation of growth|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	Ino80 complex|npBAF complex|NuA4 histone acetyltransferase complex|plasma membrane|SWI/SNF complex	ATP binding|chromatin binding			ovary(1)	1	all_cancers(143;3.94e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)			GACATTGGATCCTATACTGTG	0.323000													47	66					0	0	0.000147903	0	0
ECE2	9718	broad.mit.edu	37	3	184009945	184009945	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:184009945C>T	uc003fni.3	+	19	2609	c.2571C>T	c.(2569-2571)TCC>TCT	p.S857S	ECE2_uc003fnl.3_Silent_p.S785S|ECE2_uc003fnm.3_Silent_p.S739S|ECE2_uc003fnk.3_Silent_p.S710S	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	857	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCACTCTCTCCAACTCCCGTG	0.662000													12	60					0	0	0.00010058	0	0
PSMD2	5708	broad.mit.edu	37	3	184024179	184024179	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:184024179T>A	uc003fnn.1	+	15	1879	c.1846T>A	c.(1846-1848)TGT>AGT	p.C616S	PSMD2_uc011brj.1_Missense_Mutation_p.C457S|PSMD2_uc011brk.1_Missense_Mutation_p.C486S	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	616					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	GCTCCACATTTGTAGCGAACA	0.373000													69	141					0	0	0.000147903	0	0
MUC4	4585	broad.mit.edu	37	3	195516664	195516665	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:195516664_195516665GG>TT	uc011bto.1	-	2	2246_2247	c.1786_1787CC>AA	c.(1786-1788)CCA>AAA	p.P596K	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.P478K	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	601					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAAGAAGATGGGGATGTGGCC	0.485000													15	688					0	0	6.4e-05	0	0
HGFAC	3083	broad.mit.edu	37	4	3449240	3449240	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:3449240C>T	uc003ghc.2	+	11	1380	c.1377C>T	c.(1375-1377)TCC>TCT	p.S459S	HGFAC_uc010icw.2_Silent_p.S466S	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	459	Peptidase S1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		ACAGCGTCTCCGTGGTGCTGG	0.662000													30	70					0	0	0.000227799	0	0
EVC2	132884	broad.mit.edu	37	4	5564588	5564588	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:5564588A>T	uc003gij.2	-	22	3968	c.3914T>A	c.(3913-3915)TTG>TAG	p.L1305*	EVC2_uc011bwb.1_Nonsense_Mutation_p.L745*|EVC2_uc003gik.2_Nonsense_Mutation_p.L1225*	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1305						integral to membrane				large_intestine(3)|ovary(2)	5						GTCCATGCCCAAGGCCCTCAT	0.478000													28	72					0	0	0.000279167	0	0
GRPEL1	80273	broad.mit.edu	37	4	7062907	7062907	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:7062907C>T	uc003gjy.1	-	4	377	c.336G>A	c.(334-336)TTG>TTA	p.L112L	GRPEL1_uc003gjz.1_3'UTR	NM_025196	NP_079472	Q9HAV7	GRPE1_HUMAN	GrpE-like 1, mitochondrial precursor	112					protein folding|protein import into mitochondrial matrix	mitochondrial matrix	adenyl-nucleotide exchange factor activity|chaperone binding|protein homodimerization activity|unfolded protein binding				0						CTGCCACCTCCAACAAGTCCT	0.473000													47	113					0	0	0.000147903	0	0
SORCS2	57537	broad.mit.edu	37	4	7705995	7705995	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:7705995G>A	uc003gkb.3	+	14	1852	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K	SORCS2_uc011bwi.1_Missense_Mutation_p.E446K	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	618	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GCCAGGGGACGAGACGCTGGT	0.657000													6	20					0	0	3.59834e-05	0	0
GBA3	57733	broad.mit.edu	37	4	22749597	22749597	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:22749597G>A	uc003gqp.3	+	3	1056	c.965G>A	c.(964-966)GGA>GAA	p.G322E	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.G323E	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	322					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						AACAAGAAAGGAGAACTAGGT	0.383000													5	18					0	0	0.000602214	0	0
RBM47	54502	broad.mit.edu	37	4	40440442	40440442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:40440442C>T	uc003gvc.2	-	4	1179	c.469G>A	c.(469-471)GGG>AGG	p.G157R	RBM47_uc003gvd.2_Missense_Mutation_p.G157R|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.G119R|RBM47_uc003gvg.1_Missense_Mutation_p.G157R	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	157	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						TTGGGGATCCCGCCGATGAAG	0.647000													23	46					0	0	0.000586117	0	0
FIP1L1	81608	broad.mit.edu	37	4	54319182	54319182	+	Silent	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:54319182C>A	uc003gzy.2	+	16	1567	c.1381C>A	c.(1381-1383)CGA>AGA	p.R461R	PDGFRA_uc003haa.2_Intron|FIP1L1_uc011bzu.1_Silent_p.R455R|FIP1L1_uc003gzz.2_Silent_p.R387R|FIP1L1_uc003hab.2_Silent_p.R426R|FIP1L1_uc003hac.2_Silent_p.R215R|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_Silent_p.T45T|FIP1L1_uc003hae.2_Silent_p.T45T	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	461	Arg-rich.|Sufficient for interaction with CPSF1 and CSTF3.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			agagaaagaccgagatagaga	0.343000			T	PDGFRA	idiopathic hypereosinophilic syndrome								4	27					0.000602214	0.00926831	0.000602214	1	0
KDR	3791	broad.mit.edu	37	4	55956220	55956220	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:55956220C>T	uc003has.2	-	23	3397	c.3095G>A	c.(3094-3096)CGA>CAA	p.R1032Q	KDR_uc003hat.1_Missense_Mutation_p.R1032Q	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1032	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GAGGATATTTCGTGCCGCCAG	0.448000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			12	24					0	0	0.000308642	0	0
KDR	3791	broad.mit.edu	37	4	55976861	55976861	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:55976861G>A	uc003has.2	-	8	1353	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S	KDR_uc003hat.1_Missense_Mutation_p.P351S|KDR_uc011bzx.1_Missense_Mutation_p.P351S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	351	Ig-like C2-type 4.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TACTTCGCAGGGATTCTGACA	0.413000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	29					0	0	6.40141e-05	0	0
TECRL	253017	broad.mit.edu	37	4	65180469	65180469	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:65180469C>T	uc003hcv.2	-	5	557	c.448G>A	c.(448-450)GAA>AAA	p.E150K	TECRL_uc003hcw.2_Missense_Mutation_p.E150K	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	150	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						CCTGTGTATTCAGCCAAAAAC	0.348000													13	36					0	0	0.00010058	0	0
UGT2B4	7363	broad.mit.edu	37	4	70350966	70350966	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:70350966C>T	uc003hek.3	-	5	1317	c.1270G>A	c.(1270-1272)GAC>AAC	p.D424N	UGT2B4_uc011cap.1_Missense_Mutation_p.D288N|UGT2B4_uc003hel.3_Intron	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	424					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TTGAGTAAGTCTGTACTCGAC	0.413000													8	38					0	0	0.000442599	0	0
SULT1B1	27284	broad.mit.edu	37	4	70599213	70599213	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:70599213G>A	uc003hen.2	-	6	813	c.515C>T	c.(514-516)TCC>TTC	p.S172F		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	172					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						AGTAAACCAGGAACCATAGGC	0.294000													51	93					0	0	0.000147903	0	0
AFM	173	broad.mit.edu	37	4	74351594	74351594	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:74351594G>A	uc003hhb.2	+	4	317	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	96	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGTTTTACAGGAAAAAATATG	0.348000													6	25					0	0	8.12818e-05	0	0
CXCL6	6372	broad.mit.edu	37	4	74702991	74702991	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:74702991A>T	uc003hhf.2	+	3	509	c.314A>T	c.(313-315)AAA>ATA	p.K105I	IL8_uc011cbh.1_Intron	NM_002993	NP_002984	P80162	CXCL6_HUMAN	chemokine (C-X-C motif) ligand 6 (granulocyte	105					cell-cell signaling|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding				0	Breast(15;0.00102)		all cancers(17;0.00176)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			GTCATCCAGAAAATTTTGGAC	0.403000													19	55					0	0	0.000295444	0	0
DKK2	27123	broad.mit.edu	37	4	107845320	107845320	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:107845320C>T	uc003hyi.2	-	4	1276	c.571G>A	c.(571-573)GAA>AAA	p.E191K	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	191	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CAAAACCCTTCAATGCAGTCT	0.458000													10	24					0	0	0.000442599	0	0
FAT4	79633	broad.mit.edu	37	4	126411726	126411726	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:126411726C>T	uc003ifj.3	+	17	13749	c.13749C>T	c.(13747-13749)ATC>ATT	p.I4583I	FAT4_uc011cgp.1_Silent_p.I2824I|FAT4_uc003ifi.1_Silent_p.I2060I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4583	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AACCAGATATCATTGAAAGGG	0.478000													11	64					0	0	3.86212e-05	0	0
PCDH10	57575	broad.mit.edu	37	4	134072858	134072858	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:134072858G>A	uc003iha.2	+	1	2389	c.1563G>A	c.(1561-1563)GAG>GAA	p.E521E	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Silent_p.E521E	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	521	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TCAACTCTGAGAACGGCTACT	0.602000													35	86					0	0	0.000132358	0	0
RBM46	166863	broad.mit.edu	37	4	155720135	155720135	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:155720135C>T	uc003ioo.2	+	4	994	c.821C>T	c.(820-822)GCT>GTT	p.A274V	RBM46_uc011cim.1_Missense_Mutation_p.A274V|RBM46_uc003iop.1_Missense_Mutation_p.A274V	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	274	RRM 3.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AGAGATTATGCTTTTGTTCAC	0.358000													12	21					0	0	0.00010058	0	0
GRIA2	2891	broad.mit.edu	37	4	158242727	158242727	+	Silent	SNP	T	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:158242727T>A	uc003ipm.3	+	6	1317	c.858T>A	c.(856-858)CCT>CCA	p.P286P	GRIA2_uc011cit.1_Silent_p.P239P|GRIA2_uc003ipl.3_Silent_p.P286P|GRIA2_uc003ipk.3_Silent_p.P239P|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	286	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	AAGAATACCCTGGAGCTCACA	0.378000													18	36					0	0	9.7654e-05	0	0
ZFP42	132625	broad.mit.edu	37	4	188924832	188924832	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:188924832A>G	uc003izg.1	+	3	1116	c.871A>G	c.(871-873)AAC>GAC	p.N291D	ZFP42_uc003izh.1_Missense_Mutation_p.N291D|ZFP42_uc003izi.1_Missense_Mutation_p.N291D	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	291	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		TCAGTCAAATAACCTGAAAGC	0.458000													31	80					0	0	0.000191422	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190905467	190905467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:190905467C>T	uc011clg.1	-	3	220	c.217G>A	c.(217-219)GAC>AAC	p.D73N		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	74					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CGCACAGAGTCCATGGTGCCC	0.692000													29	73					0	0	0.000270559	0	0
SLC12A7	10723	broad.mit.edu	37	5	1081726	1081726	+	Silent	SNP	G	A	A	rs113279957		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:1081726G>A	uc003jbu.2	-	9	1329	c.1263C>T	c.(1261-1263)ACC>ACT	p.T421T		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	421	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	CAACCAGCAGGGTGAAGGAGG	0.502000													11	25					0	0	0.00010058	0	0
CDH10	1008	broad.mit.edu	37	5	24488092	24488092	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:24488092C>T	uc003jgr.1	-	12	2379	c.2047G>A	c.(2047-2049)GAA>AAA	p.E683K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	683	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCTTTTTTTCCTCAATGGCT	0.478000										HNSCC(23;0.051)			7	17					0	0	0.000274275	0	0
BDP1	55814	broad.mit.edu	37	5	70793195	70793195	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:70793195C>T	uc003kbp.1	+	13	2161	c.1898C>T	c.(1897-1899)TCA>TTA	p.S633L	BDP1_uc003kbn.1_Missense_Mutation_p.S633L|BDP1_uc003kbo.2_Missense_Mutation_p.S633L	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	633					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TCAGTTCTTTCACAAGGCAAA	0.353000													24	38					0	0	0.000147802	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262123	140262123	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:140262123C>T	uc003lif.2	+	1	270	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.I90I|PCDHA13_uc003lid.2_Silent_p.I90I	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.592000													74	126					0	0	0.000147903	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750352	140750352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:140750352C>T	uc003ljw.1	+	1	391	c.391C>T	c.(391-393)CCG>TCG	p.P131S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.P131S	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	131	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACAACCCACCGACCTTTAG	0.448000													70	80					0	0	0.000147903	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145979880	145979880	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:145979880C>T	uc003loe.2	-	7	1459	c.934G>A	c.(934-936)GAA>AAA	p.E312K	PPP2R2B_uc010jgm.2_Missense_Mutation_p.E301K|PPP2R2B_uc003log.3_Missense_Mutation_p.E312K|PPP2R2B_uc003lof.3_Missense_Mutation_p.E312K|PPP2R2B_uc003loi.3_Missense_Mutation_p.E315K|PPP2R2B_uc003loh.3_Missense_Mutation_p.E312K|PPP2R2B_uc003loj.3_Missense_Mutation_p.E292K|PPP2R2B_uc003lok.3_Missense_Mutation_p.E301K|PPP2R2B_uc011dbu.1_Missense_Mutation_p.E318K|PPP2R2B_uc011dbv.1_Missense_Mutation_p.E370K	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	312	WD 5.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGCGGTTTTCCATGTTGAGA	0.468000													14	29					0	0	0.000308642	0	0
SPINK14	408187	broad.mit.edu	37	5	147549340	147549340	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:147549340G>A	uc003loz.1	+	1	45	c.45G>A	c.(43-45)TTG>TTA	p.L15L		NM_001001325	NP_001001325	Q6IE38	ISK14_HUMAN	Kazal type serine protease inhibitor 5-like 2	15						extracellular region	serine-type endopeptidase inhibitor activity				0						CCTTTATCTTGATACATTTGG	0.393000													6	3					0	0	3.59834e-05	0	0
SPINK14	408187	broad.mit.edu	37	5	147549342	147549342	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:147549342T>A	uc003loz.1	+	1	47	c.47T>A	c.(46-48)ATA>AAA	p.I16K		NM_001001325	NP_001001325	Q6IE38	ISK14_HUMAN	Kazal type serine protease inhibitor 5-like 2	16						extracellular region	serine-type endopeptidase inhibitor activity				0						TTTATCTTGATACATTTGGTG	0.388000													6	4					0	0	3.59834e-05	0	0
FAM71B	153745	broad.mit.edu	37	5	156589596	156589596	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:156589596G>A	uc003lwn.2	-	2	1780	c.1680C>T	c.(1678-1680)ATC>ATT	p.I560I		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	560						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCTTAGCCACGATATCTACCT	0.483000													122	150					0	0	0.000147903	0	0
SQSTM1	8878	broad.mit.edu	37	5	179260650	179260650	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:179260650G>A	uc003mkw.3	+	7	1128	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	SQSTM1_uc011dgr.1_Missense_Mutation_p.E261K|SQSTM1_uc011dgs.1_Missense_Mutation_p.E261K|SQSTM1_uc003mkv.3_Intron|SQSTM1_uc003mkx.2_Missense_Mutation_p.E261K	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	345	Interaction with NTRK1 (By similarity).				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTCTTCAAAAGAAGTGGACCC	0.542000									Paget_Disease_of_Bone				14	36					0	0	0.000219431	0	0
BTNL8	79908	broad.mit.edu	37	5	180335889	180335889	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr5:180335889C>T	uc003mmp.2	+	2	587	c.353C>T	c.(352-354)TCC>TTC	p.S118F	BTNL8_uc003mmq.2_Missense_Mutation_p.S118F|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.S118F|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	118	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGATTAGTTCCCAGTCTTAC	0.463000													136	202					0	0	0.000147903	0	0
SIRT5	23408	broad.mit.edu	37	6	13612034	13612035	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:13612034_13612035GG>TT	uc003nay.2	+	10	1166_1167	c.870_871GG>TT	c.(868-873)CAGGGA>CATTGA	p.290_291QG>H*	SIRT5_uc003nax.2_Nonsense_Mutation_p.182_183QG>H*|SIRT5_uc011dit.1_Nonsense_Mutation_p.272_273QG>H*	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	290_291	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	TTCATTTCCAGGGACCCTGTGG	0.401000													13	566					0	0	6.4e-05	0	0
DTNBP1	84062	broad.mit.edu	37	6	15523240	15523240	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:15523240G>A	uc003nbm.2	-	10	1193	c.1022C>T	c.(1021-1023)GCC>GTC	p.A341V	DTNBP1_uc003nbl.2_Missense_Mutation_p.A260V|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	341					actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			ATCCGGAGTGGCCTCTCTGTC	0.572000									Hermansky-Pudlak_syndrome				37	97					0	0	0.000132358	0	0
ZNF184	7738	broad.mit.edu	37	6	27419241	27419241	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:27419241G>A	uc003njj.2	-	5	2908	c.2097C>T	c.(2095-2097)AAC>AAT	p.N699N	ZNF184_uc010jqv.2_Silent_p.N699N|ZNF184_uc003nji.2_Silent_p.N699N	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	699	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATTCATTACAGTTATAAGGTT	0.413000													19	47					0	0	0.000132079	0	0
NCR3	259197	broad.mit.edu	37	6	31557860	31557860	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31557860G>A	uc003nuv.2	-	2	351	c.87C>T	c.(85-87)ACC>ACT	p.T29T	NCR3_uc003nuw.2_Silent_p.T29T|NCR3_uc003nux.1_Silent_p.T29T	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	29	Ig-like.|Extracellular (Potential).				cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						ATCCTTCCAGGGTACGAATCT	0.577000													28	72					0	0	0.000279167	0	0
BAT3	7917	broad.mit.edu	37	6	31608303	31608304	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31608303_31608304CC>AA	uc003nvg.3	-	22	3220_3221	c.2906_2907GG>TT	c.(2905-2907)CGG>CTT	p.R969L	BAT3_uc003nvf.3_Missense_Mutation_p.R963L|BAT3_uc003nvh.3_Missense_Mutation_p.R963L|BAT3_uc003nvi.3_Missense_Mutation_p.R963L|BAT3_uc011dnw.1_Missense_Mutation_p.R963L|BAT3_uc011dnx.1_Intron	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	969					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						AAGCATTCTCCCGCTGGGTGTC	0.599000													12	376					0	0	6.4e-05	0	0
VARS	7407	broad.mit.edu	37	6	31748310	31748311	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31748310_31748311CC>AA	uc003nxe.2	-	25	3255_3256	c.2832_2833GG>TT	c.(2830-2835)CTGGGT>CTTTGT	p.G945C	VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	945					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	TGGCGGTAACCCAGTATCCGGT	0.589000													11	446					0	0	6.4e-05	0	0
LSM2	57819	broad.mit.edu	37	6	31765786	31765787	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31765786_31765787GG>TT	uc003nxg.2	-	4	351_352	c.142_143CC>AA	c.(142-144)CCT>AAT	p.P48N	VARS_uc003nxe.2_5'Flank|VARS_uc011doi.1_5'Flank	NM_021177	NP_067000	Q9Y333	LSM2_HUMAN	LSM2 homolog, U6 small nuclear RNA associated	48					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|cytosol|nucleoplasm	U6 snRNA binding				0						GTATTTCTCAGGGTCTGTGACA	0.381000													16	633					0	0	6.4e-05	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779099	31779099	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31779099C>T	uc003nxh.2	-	2	834	c.651G>A	c.(649-651)GGG>GGA	p.G217G	HSPA1L_uc010jte.2_Silent_p.G217G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	217					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTCAAAAATCCCATCATCTA	0.483000													92	501					0	0	0.000147903	0	0
C2	717	broad.mit.edu	37	6	31903790	31903791	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31903790_31903791CG>AT	uc003nyf.2	+	7	1204_1205	c.940_941CG>AT	c.(940-942)CGG>ATG	p.R314M	C2_uc003nyc.2_Missense_Mutation_p.R101M|C2_uc011doo.1_Missense_Mutation_p.R68M|C2_uc011dop.1_Intron|C2_uc010jtk.2_Missense_Mutation_p.R182M|C2_uc011doq.1_Missense_Mutation_p.R285M|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	314	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGACAACTCCCGGGATATGACT	0.505000													15	444					0	0	6.4e-05	0	0
RDBP	7936	broad.mit.edu	37	6	31922858	31922859	+	Missense_Mutation	DNP	GG	TT	TT	rs138737372		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:31922858_31922859GG>TT	uc003nyk.2	-	6	585_586	c.381_382CC>AA	c.(379-384)CCCCAG>CCAAAG	p.Q128K	RDBP_uc011dot.1_Missense_Mutation_p.Q128K|RDBP_uc003nyl.1_Missense_Mutation_p.Q73K|RDBP_uc003nym.1_Missense_Mutation_p.Q128K	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	128					positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						GATTTCCTCTGGGGACGTCTGG	0.455000													12	529					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32024611	32024612	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:32024611_32024612CC>AA	uc003nzl.2	-	23	8096_8097	c.7894_7895GG>TT	c.(7894-7896)GGG>TTG	p.G2632L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2692	Fibronectin type-III 19.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGTCAGCTCCCCCAGGCGAGGC	0.619000													17	778					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32046849	32046849	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:32046849C>T	uc003nzl.2	-	11	4538	c.4336G>A	c.(4336-4338)GGG>AGG	p.G1446R		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1533	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACGCGCTGCCCCTCGTGGAGG	0.692000													16	99					0	0	0.000566183	0	0
RNF5	6048	broad.mit.edu	37	6	32146391	32146392	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:32146391_32146392CG>AT	uc003oaj.3	+	1	230_231	c.103_104CG>AT	c.(103-105)CGG>ATG	p.R35M	AGPAT1_uc003oae.2_5'Flank|AGPAT1_uc011dpk.1_5'Flank|AGPAT1_uc003oaf.2_5'Flank|AGPAT1_uc003oag.2_5'Flank|AGPAT1_uc003oah.2_5'Flank|AGPAT1_uc003oai.1_5'Flank|AGPAT1_uc011dpl.1_5'Flank	NM_006913	NP_008844	Q99942	RNF5_HUMAN	ring finger protein 5	35	RING-type.				ER-associated misfolded protein catabolic process|protein K48-linked ubiquitination|protein K63-linked ubiquitination	endoplasmic reticulum membrane|integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						GGAGACTGCTCGGGAAGCTGTG	0.634000													13	540					0	0	6.4e-05	0	0
C6orf10	10665	broad.mit.edu	37	6	32261009	32261009	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:32261009G>A	uc011dpy.1	-	12	1614	c.1441C>T	c.(1441-1443)CTA>TTA	p.L481L	C6orf10_uc011dpx.1_Intron	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	481	Lys-rich.					integral to membrane				skin(1)	1						TGTCCTTTTAGTACACCTGAC	0.323000													13	51					0	0	0.000566183	0	0
DNAH8	1769	broad.mit.edu	37	6	38781865	38781865	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:38781865C>T	uc003ooe.1	+	23	3242	c.2642C>T	c.(2641-2643)TCC>TTC	p.S881F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GATATTATTTCCTTTATAAAA	0.313000													9	54					0	0	6.40141e-05	0	0
NCR2	9436	broad.mit.edu	37	6	41304028	41304028	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:41304028G>A	uc003oqh.2	+	2	343	c.256G>A	c.(256-258)GAC>AAC	p.D86N	NCR2_uc003oqi.2_Missense_Mutation_p.D86N|NCR2_uc003oqj.2_Missense_Mutation_p.D86N	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	86	Extracellular (Potential).|Ig-like.				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					AATCTGGGACGACCCTGATGC	0.522000													22	40					0	0	0.000295444	0	0
TAF8	129685	broad.mit.edu	37	6	42025228	42025228	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:42025228C>T	uc003ors.2	+	5	495	c.466C>T	c.(466-468)CCC>TCC	p.P156S	TAF8_uc003orr.2_Missense_Mutation_p.P156S|TAF8_uc003ort.2_Missense_Mutation_p.P156S|TAF8_uc003oru.1_Missense_Mutation_p.P156S|TAF8_uc003orv.1_Missense_Mutation_p.P156S|TAF8_uc011dun.1_Missense_Mutation_p.P93S	NM_138572	NP_612639	Q7Z7C8	TAF8_HUMAN	TBP-associated factor 8	156					cell differentiation|maintenance of protein location in nucleus|positive regulation of transcription, DNA-dependent|regulation of fat cell differentiation|transcription, DNA-dependent	perinuclear region of cytoplasm|transcription factor TFIID complex	DNA binding|protein binding			ovary(1)	1	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00179)			GTTCCCTGATCCCCACACCTA	0.592000													10	38					0	0	6.40141e-05	0	0
UBR2	23304	broad.mit.edu	37	6	42585058	42585058	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:42585058C>T	uc011dur.1	+	11	1263	c.1263C>T	c.(1261-1263)TTC>TTT	p.F421F	UBR2_uc011dus.1_Intron|UBR2_uc010jxv.1_5'UTR|UBR2_uc003osh.2_Intron|UBR2_uc003osf.2_Intron	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	421					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			CTGTCCAGTTCTTCACCGCAC	0.458000													11	26					0	0	6.40141e-05	0	0
ABCC10	89845	broad.mit.edu	37	6	43400805	43400805	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:43400805C>T	uc003ouy.1	+	3	1302	c.1087C>T	c.(1087-1089)CTG>TTG	p.L363L	ABCC10_uc003ouz.1_Silent_p.L320L|ABCC10_uc010jyo.1_5'Flank	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	363	ABC transmembrane type-1 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			GCTGAACATCCTGTACTGCAA	0.577000													35	61					0	0	0.00058488	0	0
GTPBP2	54676	broad.mit.edu	37	6	43592393	43592393	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:43592393G>A	uc003ovs.2	-	7	991	c.954C>T	c.(952-954)ATC>ATT	p.I318I	GTPBP2_uc010jyv.2_Silent_p.I230I|GTPBP2_uc003ovt.1_Silent_p.I318I	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	318	GTP (By similarity).						GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CACATAGGTCGATCTTGCTGA	0.602000													10	71					0	0	6.40141e-05	0	0
KCNQ5	56479	broad.mit.edu	37	6	73905049	73905049	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:73905049G>A	uc003pgk.2	+	14	3058	c.2711G>A	c.(2710-2712)AGG>AAG	p.R904K	KCNQ5_uc011dyh.1_Missense_Mutation_p.R923K|KCNQ5_uc011dyi.1_Missense_Mutation_p.R914K|KCNQ5_uc010kat.2_Missense_Mutation_p.R895K|KCNQ5_uc011dyj.1_Missense_Mutation_p.R794K|KCNQ5_uc011dyk.1_Missense_Mutation_p.R654K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	904					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GACTCTCTAAGGACTGGAAGG	0.483000													29	33					0	0	0.000279167	0	0
C6orf170	221322	broad.mit.edu	37	6	121481215	121481215	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:121481215G>A	uc003pyo.1	-	24	2782	c.2714C>T	c.(2713-2715)TCA>TTA	p.S905L	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_Missense_Mutation_p.S4L|C6orf170_uc003pyp.1_Missense_Mutation_p.S465L	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	905					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		CAATGGATATGATGAAAACAT	0.303000													25	101					0	0	0.000147802	0	0
THEMIS	387357	broad.mit.edu	37	6	128150713	128150713	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:128150713G>A	uc003qbi.2	-	4	936	c.617C>T	c.(616-618)TCA>TTA	p.S206L	THEMIS_uc010kfa.2_Missense_Mutation_p.S109L|THEMIS_uc011ebt.1_Missense_Mutation_p.S206L|THEMIS_uc010kfb.2_Missense_Mutation_p.S171L	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	206	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CCACTTATTTGAAAAATCTGT	0.353000													32	36					0	0	0.000339439	0	0
LAMA2	3908	broad.mit.edu	37	6	129649516	129649516	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:129649516G>A	uc003qbn.2	+	29	4375	c.4270G>A	c.(4270-4272)GGA>AGA	p.G1424R	LAMA2_uc003qbo.2_Missense_Mutation_p.G1424R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1424	Laminin EGF-like 15.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCAATGTAATGGACACAGCAG	0.527000													10	22					0	0	0.000442599	0	0
HIVEP2	3097	broad.mit.edu	37	6	143092937	143092937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:143092937G>A	uc003qjd.2	-	5	3682	c.2939C>T	c.(2938-2940)TCC>TTC	p.S980F		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	980	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		AAAAGACATGGAGAAACTGGA	0.512000													42	61					0	0	0.000437636	0	0
C6orf118	168090	broad.mit.edu	37	6	165715662	165715662	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr6:165715662T>A	uc003qum.3	-	2	185	c.149A>T	c.(148-150)AAA>ATA	p.K50I	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	50											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CCGGTGGTCTTTCTGAAGCCG	0.547000													41	40					0	0	0.000437636	0	0
RADIL	55698	broad.mit.edu	37	7	4841434	4841435	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:4841434_4841435CC>TT	uc003snj.1	-	12	2864_2865	c.2691_2692GG>AA	c.(2689-2694)ACGGAC>ACAAAC	p.D898N	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Missense_Mutation_p.D403N|RADIL_uc011jwc.1_Missense_Mutation_p.D658N|RADIL_uc011jwd.1_RNA|RADIL_uc003snh.1_Missense_Mutation_p.D194N	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	898	Pro-rich.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CAGGACGAGTCCGTGTGCGGGG	0.723000													11	16					0	0	6.4e-05	0	0
TNRC18	84629	broad.mit.edu	37	7	5427351	5427351	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:5427351G>A	uc003soi.3	-	5	2453	c.2104C>T	c.(2104-2106)CCT>TCT	p.P702S	TNRC18_uc010ksx.1_Missense_Mutation_p.P628S	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	702							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		ACCAGCCCAGGCCCCAGCCGG	0.662000													16	82					0	0	0.000375601	0	0
FBXL18	80028	broad.mit.edu	37	7	5521422	5521422	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:5521422G>A	uc003son.3	-	5	2235	c.2141C>T	c.(2140-2142)CCG>CTG	p.P714L		NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	Error:Variant_position_missing_in_Q96ME1_after_alignment										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		CCACAGGTTCGGCGGTTCCTC	0.632000													62	118					0	0	0.000147903	0	0
UPK3B	80761	broad.mit.edu	37	7	76144448	76144448	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:76144448C>T	uc003ufq.2	+	4	1068	c.843C>T	c.(841-843)CCC>CCT	p.P281P	UPK3B_uc003ufo.2_Missense_Mutation_p.P253L|UPK3B_uc010ldk.1_Silent_p.P226P	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	281	Cytoplasmic (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				CACCACATCCCACCCAGAGAG	0.706000													6	6					0	0	8.12818e-05	0	0
KRIT1	889	broad.mit.edu	37	7	91842565	91842565	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:91842565G>A	uc003ulq.1	-	15	2140	c.1969C>T	c.(1969-1971)CCT>TCT	p.P657S	KRIT1_uc010lev.1_Missense_Mutation_p.P414S|KRIT1_uc003ulr.1_Missense_Mutation_p.P657S|KRIT1_uc003uls.1_Missense_Mutation_p.P657S|KRIT1_uc003ult.1_Missense_Mutation_p.P609S|KRIT1_uc003ulu.1_Missense_Mutation_p.P657S|KRIT1_uc003ulv.1_Missense_Mutation_p.P657S	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	657	Required for RAP1A binding.|FERM.				angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ACATACACAGGGATGACTTTA	0.368000									Familial_Cerebral_Cavernous_Angioma				6	71					0	0	0.000274275	0	0
LMTK2	22853	broad.mit.edu	37	7	97822756	97822756	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:97822756C>T	uc003upd.1	+	11	3272	c.2979C>T	c.(2977-2979)TCC>TCT	p.S993S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	993					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CTGAGCCGTCCCTGGAAACCC	0.587000													58	113					0	0	0.000147903	0	0
ZAN	7455	broad.mit.edu	37	7	100350192	100350192	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:100350192C>A	uc003uwj.2	+	14	2629	c.2464C>A	c.(2464-2466)CCC>ACC	p.P822T	ZAN_uc003uwk.2_Missense_Mutation_p.P822T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	822	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CATGGAAAAACCCACTCTCCC	0.512000													12	115					2.62699e-14	4.13041e-13	0.000308642	1	0
SPDYE6	729597	broad.mit.edu	37	7	101989098	101989098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:101989098C>T	uc011kkp.1	-	6	1196	c.775G>A	c.(775-777)GAG>AAG	p.E259K	SPDYE6_uc003uzb.2_Missense_Mutation_p.E115K	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	259											0						TCGTCCTCCTCCATGTCATTG	0.557000													21	254					0	0	0.000191422	0	0
SPAM1	6677	broad.mit.edu	37	7	123594288	123594288	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:123594288C>T	uc003vld.2	+	4	1066	c.664C>T	c.(664-666)CCG>TCG	p.P222S	SPAM1_uc003vle.2_Missense_Mutation_p.P222S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P222S|SPAM1_uc010lku.2_Missense_Mutation_p.P222S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	222					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TTATCTTTTTCCGGATTGTTA	0.363000													6	15					0	0	8.12818e-05	0	0
KIAA1549	57670	broad.mit.edu	37	7	138583706	138583706	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:138583706G>A	uc011kql.1	-	9	3891	c.3842C>T	c.(3841-3843)GCC>GTC	p.A1281V	KIAA1549_uc011kqi.1_Missense_Mutation_p.A65V|KIAA1549_uc003vuk.3_Missense_Mutation_p.A1231V|KIAA1549_uc011kqj.1_Missense_Mutation_p.A1281V|KIAA1549_uc011kqk.1_Missense_Mutation_p.A65V	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1281						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTTACGCTGGGCAATGACACC	0.512000			O	BRAF	pilocytic astrocytoma								19	79					0	0	0.000175454	0	0
KEL	3792	broad.mit.edu	37	7	142640645	142640645	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:142640645G>A	uc003wcb.2	-	15	1841	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	544	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GTCAGATACCGAATAGTAAGC	0.557000													8	96					0	0	3.86212e-05	0	0
KEL	3792	broad.mit.edu	37	7	142650956	142650956	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:142650956G>A	uc003wcb.2	-	9	1222	c.1012C>T	c.(1012-1014)CAT>TAT	p.H338Y		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	338	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCCACGTCATGGACCACGAGG	0.537000													43	61					0	0	0.000509022	0	0
Unknown	0	broad.mit.edu	37	7	148975604	148975604	+	RNA	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:148975604C>T	uc003wfr.3	+	5		c.951C>T								Homo sapiens cDNA FLJ36716 fis, clone UTERU2010651.																		GTGGCCCCAGCCGGGCCAGAA	0.642000													11	29					0	0	0.000151284	0	0
ABCB8	11194	broad.mit.edu	37	7	150730720	150730720	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:150730720C>T	uc003wil.3	+	3	268	c.175C>T	c.(175-177)CTC>TTC	p.L59F	ABCB8_uc003wii.2_Missense_Mutation_p.L79F|ABCB8_uc003wij.3_Missense_Mutation_p.L42F|ABCB8_uc010lpw.1_Intron|ABCB8_uc010lpx.2_Missense_Mutation_p.L42F|ABCB8_uc011kvd.1_Intron|ABCB8_uc003wim.3_Intron|ABCB8_uc003wik.3_Missense_Mutation_p.L42F	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	59						ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGCTCCTCCCTCCTCCGGGC	0.677000													29	61					0	0	0.000191422	0	0
EN2	2020	broad.mit.edu	37	7	155255095	155255095	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:155255095A>G	uc003wmb.2	+	2	964	c.715A>G	c.(715-717)AAC>GAC	p.N239D		NM_001427	NP_001418	P19622	HME2_HUMAN	engrailed homeobox 2	239						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAGAAGAAGAACCCGAACAA	0.557000													9	82					0	0	0.000274275	0	0
EN2	2020	broad.mit.edu	37	7	155255099	155255099	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:155255099C>T	uc003wmb.2	+	2	968	c.719C>T	c.(718-720)CCG>CTG	p.P240L		NM_001427	NP_001418	P19622	HME2_HUMAN	engrailed homeobox 2	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGAAGAACCCGAACAAAGAG	0.577000													10	80					0	0	0.000442599	0	0
ZNF596	169270	broad.mit.edu	37	8	195562	195562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:195562C>T	uc003wot.2	+	6	1003	c.715C>T	c.(715-717)CGA>TGA	p.R239*	ZNF596_uc003wou.2_Nonsense_Mutation_p.R138*|ZNF596_uc003wov.2_Nonsense_Mutation_p.R239*|ZNF596_uc003wow.2_Nonsense_Mutation_p.R239*	NM_173539	NP_775810	Q8TC21	ZN596_HUMAN	zinc finger protein 596	239	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(2;4.81e-29)|all_epithelial(2;5.03e-19)|Lung NSC(2;8.68e-08)|all_lung(2;1.52e-07)|Ovarian(12;0.00965)|Colorectal(14;0.0367)|all_neural(12;0.0837)|Myeloproliferative disorder(644;0.116)|all_hematologic(2;0.138)|Acute lymphoblastic leukemia(644;0.242)		Epithelial(5;3.77e-18)|all cancers(2;5.2e-17)|OV - Ovarian serous cystadenocarcinoma(5;5.37e-09)|BRCA - Breast invasive adenocarcinoma(11;1.7e-06)|Colorectal(2;6.51e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0702)		CTCTGATCTTCGAAAACATGA	0.413000													6	23					0	0	3.59834e-05	0	0
ADAM18	8749	broad.mit.edu	37	8	39442147	39442147	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:39442147C>T	uc003xni.2	+	1	6	c.6C>T	c.(4-6)TTC>TTT	p.F2F	ADAM18_uc003xnh.2_Silent_p.F2F|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.F2F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	2					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GAGCCATGTTCCTTCTCCTCG	0.627000													26	38					0	0	0.000109025	0	0
ANK1	286	broad.mit.edu	37	8	41585483	41585483	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:41585483C>T	uc003xok.2	-	4	354	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.Q90Q|ANK1_uc003xoj.2_Silent_p.Q90Q|ANK1_uc003xol.2_Silent_p.Q90Q|ANK1_uc003xom.2_Silent_p.Q123Q	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	90	89 kDa domain.|ANK 2.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCACCTCATCCTGCCCGGCTA	0.602000													23	41					0	0	0.000227799	0	0
RP1	6101	broad.mit.edu	37	8	55537354	55537354	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:55537354G>A	uc003xsd.1	+	4	1060	c.912G>A	c.(910-912)AAG>AAA	p.K304K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	304					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCTTAGAAAAGAATGATTCTC	0.318000													5	58					0	0	3.59834e-05	0	0
RP1	6101	broad.mit.edu	37	8	55541396	55541396	+	Missense_Mutation	SNP	C	T	T	rs151328121	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:55541396C>T	uc003xsd.1	+	4	5102	c.4954C>T	c.(4954-4956)CGC>TGC	p.R1652C	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1652			R -> L (in RP1; uncertain pathogenicity).		axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGGGTCTACCCGCAAATCTCA	0.373000													37	64					0	0	0.000132358	0	0
XKR4	114786	broad.mit.edu	37	8	56436558	56436558	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:56436558G>A	uc003xsf.2	+	3	1757	c.1725G>A	c.(1723-1725)GTG>GTA	p.V575V		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	575						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TCTTTCAAGTGAGGCCCACTG	0.532000													28	42					0	0	0.000147802	0	0
EYA1	2138	broad.mit.edu	37	8	72184096	72184096	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:72184096T>C	uc003xys.3	-	9	1150	c.863A>G	c.(862-864)AAA>AGA	p.K288R	EYA1_uc003xyr.3_Missense_Mutation_p.K283R|EYA1_uc003xyt.3_Missense_Mutation_p.K255R|EYA1_uc010lzf.2_Missense_Mutation_p.K215R|EYA1_uc003xyu.2_Missense_Mutation_p.K288R|EYA1_uc011lfe.1_Missense_Mutation_p.K282R|EYA1_uc003xyv.2_Missense_Mutation_p.K166R	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	288					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			ATCTGAATCTTTAATGGGTGT	0.453000													33	68					0	0	0.000191422	0	0
KCNB2	9312	broad.mit.edu	37	8	73849751	73849751	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:73849751G>A	uc003xzb.2	+	3	2749	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	721	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GAACTTTAAGGAAAATAGAGG	0.527000													6	60					0	0	8.12818e-05	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768164	77768164	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:77768164G>A	uc003yav.2	+	10	9259	c.8872G>A	c.(8872-8874)GAA>AAA	p.E2958K	ZFHX4_uc003yau.1_Missense_Mutation_p.E3003K|ZFHX4_uc003yaw.1_Missense_Mutation_p.E2958K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2958						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGGCGGAACGGAAGGCACCAA	0.458000										HNSCC(33;0.089)			4	8					0	0	0.00024832	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768230	77768230	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:77768230C>T	uc003yav.2	+	10	9325	c.8938C>T	c.(8938-8940)CAC>TAC	p.H2980Y	ZFHX4_uc003yau.1_Missense_Mutation_p.H3025Y|ZFHX4_uc003yaw.1_Missense_Mutation_p.H2980Y	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2980	C2H2-type 18.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATCAGAGATCACATTTTCTC	0.527000										HNSCC(33;0.089)			5	15					0	0	0.000602214	0	0
ZNF704	619279	broad.mit.edu	37	8	81733664	81733664	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:81733664G>A	uc003yby.1	-	2	398	c.166C>T	c.(166-168)CTC>TTC	p.L56F		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	56						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TGCTCAAGGAGACAGATGGAG	0.453000													26	117					0	0	0.000147802	0	0
INTS8	55656	broad.mit.edu	37	8	95877810	95877811	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:95877810_95877811GG>TT	uc003yhb.2	+	17	2279_2280	c.2153_2154GG>TT	c.(2152-2154)TGG>TTT	p.W718F	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.W545F	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	718					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					AAAGACCTTTGGGAAGTTGTTG	0.401000													14	526					0	0	6.4e-05	0	0
TP53INP1	94241	broad.mit.edu	37	8	95952090	95952091	+	Missense_Mutation	DNP	GG	TT	TT	rs138480504		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:95952090_95952091GG>TT	uc003yhg.2	-	3	854_855	c.470_471CC>AA	c.(469-471)CCC>CAA	p.P157Q	C8orf38_uc003yhe.1_Intron|C8orf38_uc003yhf.2_Intron|TP53INP1_uc003yhh.2_Missense_Mutation_p.P157Q	NM_033285	NP_150601	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	157					apoptosis	PML body					0	Breast(36;8.75e-07)					TAACGTACCTGGGACTACTTGG	0.441000													9	240					0	0	6.4e-05	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509266	110509266	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:110509266G>C	uc003yne.2	+	64	10550	c.10446G>C	c.(10444-10446)TGG>TGC	p.W3482C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3482	PbH1 8.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTACCATTTGGACATGCTGGG	0.338000										HNSCC(38;0.096)			26	81					0	0	0.00047179	0	0
SLC30A8	169026	broad.mit.edu	37	8	118184820	118184820	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:118184820C>T	uc003yoh.2	+	8	1240	c.1010C>T	c.(1009-1011)GCC>GTC	p.A337V	SLC30A8_uc010mcz.2_Missense_Mutation_p.A288V|SLC30A8_uc011lia.1_Missense_Mutation_p.A288V|SLC30A8_uc003yog.2_Missense_Mutation_p.A288V	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	337	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			ATTGCTAAAGCCCTTAGCAAA	0.512000													7	26					0	0	0.000442599	0	0
FBXO32	114907	broad.mit.edu	37	8	124518738	124518738	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:124518738C>T	uc003yqr.2	-	7	920	c.728G>A	c.(727-729)GGG>GAG	p.G243E	FBXO32_uc003yqq.2_Missense_Mutation_p.G98E|FBXO32_uc010mdk.2_Missense_Mutation_p.G150E	NM_058229	NP_478136	Q969P5	FBX32_HUMAN	F-box only protein 32 isoform 1	243	F-box.									skin(3)|breast(2)|lung(1)	6	Lung NSC(37;1.13e-13)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CAGGTCCCGCCCGTCGCTCAG	0.602000													23	33					0	0	9.22233e-05	0	0
COL22A1	169044	broad.mit.edu	37	8	139833559	139833559	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:139833559C>T	uc003yvd.2	-	7	1512	c.1065G>A	c.(1063-1065)CGG>CGA	p.R355R		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	355	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGTCATTGACCCGAGAACCTC	0.577000										HNSCC(7;0.00092)			10	30					0	0	3.86212e-05	0	0
SLC45A4	57210	broad.mit.edu	37	8	142229076	142229077	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:142229076_142229077GG>AA	uc003ywd.1	-	4	817_818	c.509_510CC>TT	c.(508-510)ACC>ATT	p.T170I	SLC45A4_uc003ywc.1_Missense_Mutation_p.T170I|SLC45A4_uc010meq.1_Missense_Mutation_p.T168I	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	221					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGCCCAGGAAGGTCTGGGTCCA	0.658000													11	75					0	0	6.4e-05	0	0
MAPK15	225689	broad.mit.edu	37	8	144801635	144801635	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:144801635C>T	uc003yzj.2	+	7	745	c.704C>T	c.(703-705)CCA>CTA	p.P235L		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	235	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GAGACCATCCCACCGCCATCT	0.657000													10	33					0	0	0.000442599	0	0
PLEC	5339	broad.mit.edu	37	8	144993494	144993494	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:144993494T>C	uc003zaf.1	-	32	11076	c.10906A>G	c.(10906-10908)AAC>GAC	p.N3636D	PLEC_uc003zab.1_Missense_Mutation_p.N3499D|PLEC_uc003zac.1_Missense_Mutation_p.N3503D|PLEC_uc003zad.2_Missense_Mutation_p.N3499D|PLEC_uc003zae.1_Missense_Mutation_p.N3467D|PLEC_uc003zag.1_Missense_Mutation_p.N3477D|PLEC_uc003zah.2_Missense_Mutation_p.N3485D|PLEC_uc003zaj.2_Missense_Mutation_p.N3526D	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3636	Globular 2.|Plectin 15.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGGACGCGGTTCATCTCCTCA	0.657000													28	64					0	0	0.000117367	0	0
PLEC	5339	broad.mit.edu	37	8	144995804	144995805	+	Silent	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:144995804_144995805GG>AA	uc003zaf.1	-	32	8765_8766	c.8595_8596CC>TT	c.(8593-8598)ATCCTG>ATTTTG	p.2865_2866IL>IL	PLEC_uc003zab.1_Silent_p.2728_2729IL>IL|PLEC_uc003zac.1_Silent_p.2732_2733IL>IL|PLEC_uc003zad.2_Silent_p.2728_2729IL>IL|PLEC_uc003zae.1_Silent_p.2696_2697IL>IL|PLEC_uc003zag.1_Silent_p.2706_2707IL>IL|PLEC_uc003zah.2_Silent_p.2714_2715IL>IL|PLEC_uc003zaj.2_Silent_p.2755_2756IL>IL	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2865_2866	Globular 2.|Plectin 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCCTCCAGCAGGATGAGGGCCG	0.663000													14	38					0	0	6.4e-05	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145659413	145659413	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:145659413G>T	uc011llg.1	-	21	3350	c.3335C>A	c.(3334-3336)CCC>CAC	p.P1112H	uc011llh.1_5'Flank	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	1112	LRR 2.				cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CAGGCCTTCGGGACCCAGGTG	0.662000													10	35					6.40141e-05	0.000998645	6.40141e-05	1	0
ARHGAP39	80728	broad.mit.edu	37	8	145773187	145773187	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:145773187G>A	uc003zdt.1	-	6	1838	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	ARHGAP39_uc011llk.1_Missense_Mutation_p.S428F|ARHGAP39_uc003zds.1_Missense_Mutation_p.S428F	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	428					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GGGCTGCAAGGAGTACGAACC	0.711000													4	16					0	0	0.00024832	0	0
KIF24	347240	broad.mit.edu	37	9	34256461	34256461	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr9:34256461G>A	uc003zua.3	-	11	3264	c.3144C>T	c.(3142-3144)CTC>CTT	p.L1048L	KIF24_uc010mkb.2_Intron	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	1048					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			GGGGAGACATGAGTCCAGAAG	0.582000													34	34					0	0	0.000228196	0	0
KIF27	55582	broad.mit.edu	37	9	86451956	86451956	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr9:86451956G>A	uc004ana.2	-	18	4310	c.4166C>T	c.(4165-4167)TCC>TTC	p.S1389F	KIF27_uc010mpw.2_Missense_Mutation_p.S1323F|KIF27_uc010mpx.2_Missense_Mutation_p.S1292F	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1389					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TACTTCGATGGAATCAGCAGC	0.363000													25	29					0	0	0.000586117	0	0
FGD3	89846	broad.mit.edu	37	9	95797848	95797848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr9:95797848C>T	uc004asw.2	+	18	2783	c.2155C>T	c.(2155-2157)CCT>TCT	p.P719S	FGD3_uc004asx.2_Missense_Mutation_p.P718S|FGD3_uc004asz.2_Missense_Mutation_p.P719S|FGD3_uc011luc.1_Missense_Mutation_p.P322S	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	719					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GCTTCAGGTCCCTATGGGCGC	0.657000													13	22					0	0	7.07596e-05	0	0
KIAA0649	9858	broad.mit.edu	37	9	138376596	138376596	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr9:138376596C>T	uc004cfr.1	+	4	789	c.240C>T	c.(238-240)GAC>GAT	p.D80D		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	80						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GATGCCACGACGCCAGGCCGG	0.662000													6	37					0	0	8.12818e-05	0	0
FAM166A	401565	broad.mit.edu	37	9	140140000	140140000	+	Missense_Mutation	SNP	G	A	A	rs77069806	by1000genomes	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr9:140140000G>A	uc004cmi.1	-	3	336	c.281C>T	c.(280-282)CCC>CTC	p.P94L		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	94										ovary(1)	1						GTTCTTAGAGGGCTTCAGACC	0.622000													8	58					0	0	3.86212e-05	0	0
ARSD	414	broad.mit.edu	37	X	2825553	2825553	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:2825553G>A	uc004cqy.2	-	10	1617	c.1541C>T	c.(1540-1542)CCT>CTT	p.P514L	ARSD_uc004cqz.1_RNA	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	514						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AAAGAGCAAAGGGGGTCTGTG	0.692000													4	11					0	0	0.000602214	0	0
MXRA5	25878	broad.mit.edu	37	X	3242878	3242878	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:3242878G>A	uc004crg.3	-	5	1005	c.848C>T	c.(847-849)CCT>CTT	p.P283L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	283						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGTCTCAGAGGGGACTCTAT	0.493000													39	80					0	0	0.000147903	0	0
SHROOM2	357	broad.mit.edu	37	X	9863311	9863311	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:9863311G>A	uc004csu.1	+	4	1453	c.1363G>A	c.(1363-1365)GAC>AAC	p.D455N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	455					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CTTCCAGAACGACAGCCCTCC	0.672000													14	52					0	0	0.000151284	0	0
ARHGAP6	395	broad.mit.edu	37	X	11682527	11682527	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:11682527G>A	uc004cup.1	-	1	1295	c.422C>T	c.(421-423)TCT>TTT	p.S141F	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.S141F	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	141					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						GGCCAGGACAGAAGGCAGGTC	0.627000													5	17					0	0	8.12818e-05	0	0
OFD1	8481	broad.mit.edu	37	X	13757012	13757012	+	Silent	SNP	T	C	C			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:13757012T>C	uc004cvp.3	+	4	719	c.360T>C	c.(358-360)ACT>ACC	p.T120T	OFD1_uc004cvr.3_5'UTR|OFD1_uc011mil.1_5'UTR|OFD1_uc004cvq.3_5'UTR|OFD1_uc010nen.2_Silent_p.T119T|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Silent_p.T119T|OFD1_uc004cvv.3_Silent_p.T119T	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	120					cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						TCAACCCTACTTCCAGTCTCT	0.279000													31	151					0	0	0.000159656	0	0
CTPS2	56474	broad.mit.edu	37	X	16688706	16688706	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:16688706G>A	uc004cxk.2	-	11	1930	c.1186C>T	c.(1186-1188)CTG>TTG	p.L396L	CTPS2_uc004cxl.2_Silent_p.L396L|CTPS2_uc004cxm.2_Silent_p.L396L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	396	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					GTTTTACCCAGAAAAGGAATC	0.403000													75	178					0	0	0.000147903	0	0
RAI2	10742	broad.mit.edu	37	X	17819465	17819465	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:17819465G>A	uc004cyf.2	-	3	1236	c.666C>T	c.(664-666)TCC>TCT	p.S222S	RAI2_uc004cyg.2_Silent_p.S222S|RAI2_uc010nfa.2_Silent_p.S222S|RAI2_uc004cyh.3_Silent_p.S222S|RAI2_uc011miy.1_Silent_p.S172S	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	222	Pro-rich.				embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GGACCAGGGGGGACAAGGGGG	0.622000													10	39					0	0	0.000442599	0	0
ARAF	369	broad.mit.edu	37	X	47426121	47426121	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:47426121C>T	uc011mlq.1	+	7	774	c.641C>T	c.(640-642)TCC>TTC	p.S214F	ARAF_uc011mln.1_Intron|ARAF_uc011mlo.1_Missense_Mutation_p.S80F|ARAF_uc011mlp.1_Missense_Mutation_p.S214F|ARAF_uc004dic.1_5'UTR	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	214					intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	CGCTCCACGTCCACTCCCAAC	0.662000													5	20					0	0	0.000602214	0	0
MAGED1	9500	broad.mit.edu	37	X	51638416	51638416	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:51638416A>G	uc004dpm.2	+	3	408	c.313A>G	c.(313-315)AAC>GAC	p.N105D	MAGED1_uc004dpn.2_Missense_Mutation_p.N161D|MAGED1_uc004dpo.2_Missense_Mutation_p.N105D|MAGED1_uc011mnx.1_Intron	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	105					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GGATGTGCCCAACACGCAGCC	0.502000										Multiple Myeloma(10;0.10)			5	21					0	0	3.59834e-05	0	0
FAAH2	158584	broad.mit.edu	37	X	57475082	57475082	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:57475082C>T	uc004dvc.2	+	10	1503	c.1354C>T	c.(1354-1356)CCC>TCC	p.P452S		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	452						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GTTCTTATATCCCTCACATCC	0.423000										HNSCC(52;0.14)			4	17					0	0	0.00024832	0	0
ZC4H2	55906	broad.mit.edu	37	X	64138969	64138969	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:64138969C>T	uc004dvu.2	-	4	602	c.514G>A	c.(514-516)GAT>AAT	p.D172N	ZC4H2_uc004dvv.2_Missense_Mutation_p.D149N|ZC4H2_uc011mov.1_Missense_Mutation_p.D149N|ZC4H2_uc011mow.1_Intron|ZC4H2_uc004dvw.1_3'UTR	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	172							metal ion binding|protein binding			ovary(1)	1						TGCCGAGTATCCTGCTTCCTA	0.597000													17	31					0	0	0.000566183	0	0
NLGN3	54413	broad.mit.edu	37	X	70389544	70389545	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:70389544_70389545GG>AA	uc004dzb.2	+	7	2388_2389	c.2084_2085GG>AA	c.(2083-2085)GGG>GAA	p.G695E	NLGN3_uc004dzc.2_Missense_Mutation_p.G578E|NLGN3_uc011mps.1_Missense_Mutation_p.G675E|NLGN3_uc004dze.2_Missense_Mutation_p.G513E	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	715	Helical; (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					ATCGCCGTGGGGGCCTCCCTCC	0.629000													7	33					0	0	6.4e-05	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434266	72434266	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:72434266C>T	uc004ebi.2	-	1	419	c.63G>A	c.(61-63)CAG>CAA	p.Q21Q	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	21					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					CCACCATTATCTGATTACCAG	0.567000													40	81					0	0	0.000589545	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004478	75004478	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:75004478C>T	uc004ecj.1	-	1	594	c.409G>A	c.(409-411)GAC>AAC	p.D137N		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	137	MAGE 1.									ovary(1)|skin(1)	2						AAGACCTGGTCCAGGTGAGCT	0.522000													5	8					0	0	0.000602214	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913863	77913863	+	Missense_Mutation	SNP	G	A	A	rs148985625		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:77913863G>A	uc004edc.1	-	2	351	c.55C>T	c.(55-57)CGG>TGG	p.R19W		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	19							nucleic acid binding|zinc ion binding			ovary(1)	1						TGAGCCTGCCGAATTTCATTC	0.463000													6	37					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	X	80185407	80185407	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:80185407C>T	uc004eec.1	+	1	480	c.306C>T	c.(304-306)TCC>TCT	p.S102S						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		TTGGGCCTTCCATCCGGGGTG	0.507000													8	61					0	0	0.000274275	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910496	101910497	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:101910496_101910497CC>AA	uc004ejj.3	+	5	2456_2457	c.1655_1656CC>AA	c.(1654-1656)CCC>CAA	p.P552Q	GPRASP1_uc004eji.3_Missense_Mutation_p.P552Q|GPRASP1_uc010nod.2_Missense_Mutation_p.P552Q	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	552	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						GTCATTGGTCCCTGGTTTTGGT	0.535000													10	262					0	0	6.4e-05	0	0
NXF3	56000	broad.mit.edu	37	X	102338596	102338596	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:102338596C>T	uc004eju.2	-	4	447	c.376G>A	c.(376-378)GAG>AAG	p.E126K	NXF3_uc010noi.1_5'UTR|NXF3_uc011mrw.1_Missense_Mutation_p.E126K|NXF3_uc011mrx.1_Missense_Mutation_p.E37K	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	126	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AGCCACTTCTCATTGTATTTT	0.418000													43	73					0	0	0.000509022	0	0
MORC4	79710	broad.mit.edu	37	X	106224175	106224175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:106224175C>T	uc004emu.3	-	7	1125	c.882G>A	c.(880-882)ATG>ATA	p.M294I	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.M294I|MORC4_uc004emw.3_Missense_Mutation_p.M42I	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	294							ATP binding|zinc ion binding			ovary(1)	1						TCTTGGCAATCATCTGGGTAG	0.398000													7	22					0	0	0.000157383	0	0
IRS4	8471	broad.mit.edu	37	X	107976740	107976741	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:107976740_107976741CC>AA	uc004eoc.2	-	1	2867_2868	c.2834_2835GG>TT	c.(2833-2835)TGG>TTT	p.W945F		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	945						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CAATTATGCCCCACGAATCTGG	0.450000													12	507					0	0	6.4e-05	0	0
KLHL13	90293	broad.mit.edu	37	X	117033291	117033291	+	Silent	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:117033291G>A	uc004eql.2	-	7	1610	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	KLHL13_uc004eqk.2_Silent_p.I465I|KLHL13_uc011mtn.1_Silent_p.I356I|KLHL13_uc011mto.1_Silent_p.I510I|KLHL13_uc011mtp.1_Silent_p.I518I|KLHL13_uc004eqm.2_Silent_p.I465I|KLHL13_uc011mtq.1_Silent_p.I500I	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	516	Kelch 4.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GCGCCTTCTGGATCCATTTGT	0.423000													11	35					0	0	0.00010058	0	0
DOCK11	139818	broad.mit.edu	37	X	117749610	117749610	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:117749610C>T	uc004eqp.2	+	30	3291	c.3228C>T	c.(3226-3228)CAC>CAT	p.H1076H	DOCK11_uc004eqq.2_Silent_p.H842H	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1076					blood coagulation	cytosol	GTP binding			ovary(3)	3						TTTGCAATCACGAACATTACA	0.353000													9	16					0	0	6.40141e-05	0	0
C1GALT1C1	29071	broad.mit.edu	37	X	119760874	119760874	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:119760874C>T	uc004esy.2	-	3	495	c.148G>A	c.(148-150)GAA>AAA	p.E50K	C1GALT1C1_uc004esz.2_Missense_Mutation_p.E50K	NM_152692	NP_689905	Q96EU7	C1GLC_HUMAN	C1GALT1-specific chaperone 1	50	Lumenal (Potential).					integral to membrane					0						AAGATATCTTCTTTGTTAGGA	0.398000													26	160					0	0	0.000117367	0	0
OCRL	4952	broad.mit.edu	37	X	128691357	128691357	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:128691357C>T	uc004euq.2	+	5	459	c.294C>T	c.(292-294)ATC>ATT	p.I98I	OCRL_uc004eur.2_Silent_p.I98I	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	98					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						GCTTTGAAATCCCTGATGAGG	0.433000													36	47					0	0	0.000437636	0	0
IGSF1	3547	broad.mit.edu	37	X	130419794	130419794	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:130419794C>T	uc004ewd.2	-	4	564	c.326G>A	c.(325-327)TGG>TAG	p.W109*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W98*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W89*|IGSF1_uc004ewg.2_Nonsense_Mutation_p.W109*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	109	Ig-like C2-type 1.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGTCTCCTTCCAGTAGCAGCA	0.498000													42	73					0	0	0.000437636	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994657	140994657	+	Silent	SNP	C	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:140994657C>T	uc004fbt.2	+	4	1753	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	489							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCTCCTCCACTTTATTGA	0.493000										HNSCC(15;0.026)			60	137					0	0	0.000147903	0	0
DUSP9	1852	broad.mit.edu	37	X	152914836	152914836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:152914836G>A	uc004fhx.3	+	3	727	c.523G>A	c.(523-525)GAA>AAA	p.E175K	DUSP9_uc004fhy.3_Missense_Mutation_p.E175K	NM_001395	NP_001386	Q99956	DUS9_HUMAN	dual specificity phosphatase 9	175					inactivation of MAPK activity|JNK cascade	cytosol|endoplasmic reticulum|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCTGATGCGGAATCCGAGGC	0.692000													10	49					0	0	0.00010058	0	0
F8	2157	broad.mit.edu	37	X	154124378	154124378	+	Nonsense_Mutation	SNP	G	A	A	rs137852356		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chrX:154124378G>A	uc004fmt.2	-	22	6574	c.6403C>T	c.(6403-6405)CGA>TGA	p.R2135*	F8_uc010nvi.1_3'UTR	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2135	F5/8 type C 1.		R -> P (in HEMA; severe).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GAATTTCCTCGATAAGTCTGC	0.408000													26	108					0	0	0.000184323	0	0
SFRS4	6429	broad.mit.edu	37	1	29475298	29475309	+	In_Frame_Del	DEL	CTGCGACTGCGA	-	-	rs146585589	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:29475298_29475309delCTGCGACTGCGA	uc001bro.2	-	6	1471_1482	c.1098_1109delTCGCAGTCGCAG	c.(1096-1110)AGTCGCAGTCGCAGC>AGC	p.366_370SRSRS>S	SFRS4_uc010ofy.1_3'UTR	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	366_370	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		cttgctgcggctgcgactgcgactgcggctct	0.094													8	22	---	---	---	---					
APOA1BP	128240	broad.mit.edu	37	1	156562376	156562376	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr1:156562376delA	uc001fph.2	+	4	469	c.430delA	c.(430-432)AAAfs	p.K144fs	APOA1BP_uc001fpg.2_Frame_Shift_Del_p.K144fs|APOA1BP_uc001fpi.2_Frame_Shift_Del_p.K144fs|APOA1BP_uc001fpj.2_Frame_Shift_Del_p.K61fs|APOA1BP_uc001fpk.2_Frame_Shift_Del_p.K41fs|APOA1BP_uc010php.1_Frame_Shift_Del_p.K41fs	NM_144772	NP_658985	Q8NCW5	AIBP_HUMAN	apolipoprotein A-I binding protein precursor	144	YjeF N-terminal.					extracellular region	protein binding			central_nervous_system(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTATTACCCCAAAAGGCCTAA	0.567													7	368	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20852647	20852647	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:20852647delC	uc001vxe.2	-	23	3282	c.3242delG	c.(3241-3243)GGTfs	p.G1081fs	TEP1_uc010ahk.2_Frame_Shift_Del_p.G431fs|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Frame_Shift_Del_p.G973fs|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1081					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGCTGCCACACCCCCCCACTC	0.587													7	401	---	---	---	---					
CTAGE5	4253	broad.mit.edu	37	14	39746242	39746243	+	Frame_Shift_Ins	INS	-	T	T	rs78536283	byFrequency	TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr14:39746242_39746243insT	uc001wvg.3	+	2	504_505	c.168_169insT	c.(166-171)CTCTTTfs	p.L56fs	CTAGE5_uc010tqe.1_Frame_Shift_Ins_p.L44fs|CTAGE5_uc001wuz.3_Frame_Shift_Ins_p.L44fs|CTAGE5_uc001wuy.3_5'UTR|CTAGE5_uc001wvb.3_Frame_Shift_Ins_p.L27fs|CTAGE5_uc001wvc.3_Frame_Shift_Ins_p.L27fs|CTAGE5_uc001wva.3_Frame_Shift_Ins_p.L27fs|CTAGE5_uc001wve.1_Frame_Shift_Ins_p.L27fs|CTAGE5_uc001wvh.3_Frame_Shift_Ins_p.L56fs|CTAGE5_uc001wvf.3_Intron|CTAGE5_uc001wvi.3_Frame_Shift_Ins_p.L56fs|CTAGE5_uc010amz.2_5'UTR|CTAGE5_uc001wvj.3_Frame_Shift_Ins_p.L27fs	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	56_57							enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		TTGCTGTTCTCTTTTTTTTGTG	0.371													8	144	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	-	-	rs66601910		TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	uc002bon.2	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)GAGGGGCAGGGGCAAGGGCAGGGGCAG>GAG	p.GQGQGQGQ195del	MESP2_uc010uqa.1_Intron	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	195_202	13 X 2 AA tandem repeats of G-Q.|12.			Missing (in Ref. 2; AAI11414).	Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.473													2	4	---	---	---	---					
COIL	8161	broad.mit.edu	37	17	55028117	55028118	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr17:55028117_55028118insT	uc002iuu.2	-	2	516_517	c.485_486insA	c.(484-486)AACfs	p.N162fs		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	162						Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					TTTTTCTCTTGTTTTTTTTGCT	0.366													16	270	---	---	---	---					
NCOA1	8648	broad.mit.edu	37	2	24985616	24985618	+	In_Frame_Del	DEL	CTT	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr2:24985616_24985618delCTT	uc002rfk.2	+	20	4384_4386	c.4126_4128delCTT	c.(4126-4128)CTTdel	p.L1377del	NCOA1_uc010eye.2_In_Frame_Del_p.L1377del|NCOA1_uc002rfi.2_In_Frame_Del_p.L1226del|NCOA1_uc002rfj.2_In_Frame_Del_p.L1377del|NCOA1_uc002rfl.2_In_Frame_Del_p.L1377del|NCOA1_uc010eyf.2_Intron	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1377									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCCACTGACCTTCTCAAAACAG	0.374			T	PAX3	alveolar rhadomyosarcoma								90	269	---	---	---	---					
ZXDC	79364	broad.mit.edu	37	3	126178522	126178522	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr3:126178522delT	uc003eiv.2	-	7	2240	c.2186delA	c.(2185-2187)AAGfs	p.K729fs	ZXDC_uc010hsh.2_Intron|ZXDC_uc003eix.2_3'UTR	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	729					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		TCCTCTCTGCTTTTTTTCCTT	0.522													7	785	---	---	---	---					
ARHGAP10	79658	broad.mit.edu	37	4	148827861	148827861	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr4:148827861delA	uc003ilf.2	+	11	1107	c.1107delA	c.(1105-1107)GGAfs	p.G369fs	ARHGAP10_uc003ilg.2_Frame_Shift_Del_p.G18fs	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	369	PH.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CTCTGGGTGGAAAGGAAGCTG	0.393													13	65	---	---	---	---					
WDR60	55112	broad.mit.edu	37	7	158704353	158704353	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr7:158704353delA	uc003woe.3	+	12	1731	c.1573delA	c.(1573-1575)AAAfs	p.K525fs	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Frame_Shift_Del_p.K157fs	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	525										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		AAACTTTGGGAAAAAAAATAC	0.328													7	292	---	---	---	---					
C8orf86	389649	broad.mit.edu	37	8	38385986	38385987	+	Frame_Shift_Ins	INS	-	CC	CC			TCGA-D3-A2JL-06A-11D-A196-08	TCGA-D3-A2JL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d6341f-cb6d-4a7e-9213-c7bb394aca56	bf91785e-7b33-4bd0-8ff5-c20c20b4e985	g.chr8:38385986_38385987insCC	uc003xlx.1	-	1	194_195	c.169_170insGG	c.(169-171)GTTfs	p.V57fs		NM_207412	NP_997295	Q6ZUL3	CH086_HUMAN	hypothetical protein LOC389649	57											0						TCGCTGCTCAACCCTTTCCTTC	0.550													15	46	---	---	---	---					
