Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1751	85452	broad.mit.edu	37	1	1905555	1905555	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:1905555C>T	uc001aim.1	-	7	739	c.583G>A	c.(583-585)GGG>AGG	p.G195R	KIAA1751_uc009vkz.1_Missense_Mutation_p.G195R	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	195										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		AGCCGCCGCCCCGTGGCCTCC	0.652000													10	23					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11576105	11576105	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:11576105C>T	uc001ash.3	+	6	1774	c.1636C>T	c.(1636-1638)CAC>TAC	p.H546Y	PTCHD2_uc001asi.1_Missense_Mutation_p.H546Y	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	546	SSD.|Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCAGGCCACCCACCTGGAAGA	0.592000													10	31					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183328	13183328	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:13183328G>A	uc010obg.1	-	1	640	c.545C>T	c.(544-546)GCC>GTC	p.A182V		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	182						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CTGCTTAATGGCCTGAAGGTC	0.453000													66	818					0	0	1	0	0
CROCC	9696	broad.mit.edu	37	1	17279836	17279836	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:17279836C>T	uc001azt.2	+	21	3115	c.3046C>T	c.(3046-3048)CTG>TTG	p.L1016L	CROCC_uc009voz.1_Silent_p.L615L|CROCC_uc001azu.2_Silent_p.L319L	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1016	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GCGGGCCCAGCTGCAGAGTCA	0.687000													4	10					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23232506	23232506	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:23232506G>A	uc009vqj.1	+	10	1937	c.1792G>A	c.(1792-1794)GAT>AAT	p.D598N	EPHB2_uc001bge.2_Missense_Mutation_p.D599N|EPHB2_uc001bgf.2_Missense_Mutation_p.D598N|EPHB2_uc010odu.1_Missense_Mutation_p.D540N	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	598	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GATCTACATCGATCCTTTCAC	0.522000									Hereditary_Prostate_Cancer				25	48					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32196407	32196407	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:32196407G>A	uc001btn.2	-	29	4728	c.4374C>T	c.(4372-4374)TCC>TCT	p.S1458S	BAI2_uc001btm.2_Silent_p.S452S|BAI2_uc001btp.1_Silent_p.S452S|BAI2_uc010ogn.1_Silent_p.S428S|BAI2_uc010ogo.1_Silent_p.S1067S|BAI2_uc010ogp.1_Silent_p.S1391S|BAI2_uc010ogq.1_Silent_p.S1425S|BAI2_uc001bto.2_Silent_p.S1458S	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1458	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TCACCTCCAGGGAGCCCATCT	0.682000													23	42					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47283859	47283859	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:47283859C>T	uc001cqm.3	+	11	1410	c.1326C>T	c.(1324-1326)GCC>GCT	p.A442A	CYP4B1_uc001cqn.3_Silent_p.A443A|CYP4B1_uc009vym.2_Silent_p.A428A|CYP4B1_uc010omk.1_Silent_p.A279A	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	442					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					ATCCCTTTGCCTTTATGCCCT	0.562000													30	74					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57395187	57395187	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:57395187A>G	uc001cyp.2	-	12	1733	c.1666T>C	c.(1666-1668)TCA>CCA	p.S556P	C8B_uc010oon.1_Missense_Mutation_p.S494P|C8B_uc010ooo.1_Missense_Mutation_p.S504P	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	556	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CCAGAGCATGAAGACCAATTT	0.448000													30	54					0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94652062	94652062	+	Silent	SNP	T	C	C	rs144875752	byFrequency	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:94652062T>C	uc001dqj.3	-	16	2142	c.1773A>G	c.(1771-1773)TCA>TCG	p.S591S	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.S157S	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	591					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TACCAGTTTCTGAAGGGGAAG	0.378000													11	176					0	0	1	0	0
KCNA3	3738	broad.mit.edu	37	1	111215722	111215722	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:111215722C>T	uc001dzv.1	-	1	1934	c.1710G>A	c.(1708-1710)AAG>AAA	p.K570K		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	570						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGGTGAATATCTTTTTGATGT	0.453000													51	86					0	0	1	0	0
LOC149620	149620	broad.mit.edu	37	1	111824209	111824209	+	RNA	SNP	G	A	A	rs6537690	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:111824209G>A	uc009wgb.2	+	2		c.67G>A				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						TTCACCAACTGGGCCCAGAAC	0.517000													3	24					0	0	1	0	0
BOLA1	51027	broad.mit.edu	37	1	149871724	149871725	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:149871724_149871725AC>CT	uc001etf.2	+	2	233_234	c.112_113AC>CT	c.(112-114)ACG>CTG	p.T38L		NM_016074	NP_057158	Q9Y3E2	BOLA1_HUMAN	bolA-like 1	38						extracellular region	protein binding			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGCCATTCGCACGAAGTTGGAG	0.688000													10	45					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146313	156146313	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:156146313C>T	uc001fnl.2	+	15	1915	c.1811C>T	c.(1810-1812)ACT>ATT	p.T604I	SEMA4A_uc009wrq.2_Missense_Mutation_p.T604I|SEMA4A_uc001fnm.2_Missense_Mutation_p.T604I|SEMA4A_uc001fnn.2_Missense_Mutation_p.T472I|SEMA4A_uc001fno.2_Missense_Mutation_p.T604I	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	604	Extracellular (Potential).|Ig-like C2-type.				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GCCTCTTCCACTGTCTACAAT	0.562000													15	66					0	0	1	0	0
NCF2	4688	broad.mit.edu	37	1	183543646	183543646	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:183543646G>A	uc001gqj.3	-	4	752	c.477C>T	c.(475-477)ATC>ATT	p.I159I	NCF2_uc010pod.1_Intron|NCF2_uc010poe.1_Intron|NCF2_uc001gqk.3_Silent_p.I159I	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	159					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						TCGCCTTGTCGATTTTGGAAT	0.463000													87	241					0	0	1	0	0
TPR	7175	broad.mit.edu	37	1	186307184	186307184	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:186307184A>C	uc001grv.2	-	31	4640	c.4343T>G	c.(4342-4344)CTT>CGT	p.L1448R		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1448	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TTGTGCTTTAAGTTCTTCATA	0.269000			T	NTRK1	papillary thyroid								14	75					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201352329	201352329	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:201352329G>A	uc001gwm.2	-	7	1494	c.1259C>T	c.(1258-1260)TCT>TTT	p.S420F		NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	420						basement membrane	structural molecule activity				0						AGACTTGACAGATTCTGATCT	0.592000													45	175					0	0	1	0	0
OPTC	26254	broad.mit.edu	37	1	203465179	203465179	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:203465179G>A	uc001gzu.1	+	2	162	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	16						proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			GGTGCTGCAGGAGACAGGGAC	0.582000													16	21					0	0	1	0	0
FCAMR	83953	broad.mit.edu	37	1	207135788	207135788	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:207135788T>C	uc001hfa.3	-	5	922	c.422A>G	c.(421-423)TAC>TGC	p.Y141C	FCAMR_uc001hfb.2_Missense_Mutation_p.Y141C|FCAMR_uc009xca.1_Missense_Mutation_p.Y141C|FCAMR_uc001hfc.2_Missense_Mutation_p.Y116C	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	96	Mediates immunoglobulin Fc fragment- binding (By similarity).|Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						ACGGCACCAGTACTTCCTCTG	0.577000													17	55					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215799198	215799198	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:215799198C>T	uc001hku.1	-	72	15921	c.15534G>A	c.(15532-15534)GAG>GAA	p.E5178E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5178	Cytoplasmic (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCATCAGGTCCTCTTCATCCA	0.388000										HNSCC(13;0.011)			54	65					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232629309	232629309	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:232629309G>A	uc001hvg.2	-	2	1739	c.1581C>T	c.(1579-1581)TCC>TCT	p.S527S		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	527					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				AGTTGAACTGGGATCCTTCTT	0.473000													113	386					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245861536	245861536	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:245861536G>A	uc001ibf.1	+	13	6393	c.5953G>A	c.(5953-5955)GAA>AAA	p.E1985K		NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1985					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GGGCCTTGGGGAACCCTTTGA	0.627000													14	44					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247013018	247013018	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:247013018C>T	uc001ibu.1	-	32	6297	c.6290G>A	c.(6289-6291)AGC>AAC	p.S2097N	AHCTF1_uc001ibv.1_Missense_Mutation_p.S2106N|AHCTF1_uc009xgs.1_Missense_Mutation_p.S958N|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	2097	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			CCGAGTCCTGCTGCTGCGGGA	0.453000													34	135					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247695394	247695394	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:247695394C>T	uc009xgy.2	-	2	782	c.420G>A	c.(418-420)CAG>CAA	p.Q140Q	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	140	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CAAGGCAAAGCTGTGGATGCA	0.597000													20	24					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402594	248402594	+	Missense_Mutation	SNP	C	T	T	rs61743231		TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:248402594C>T	uc010pzh.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GGCTTATGACCGCTATGTGGC	0.463000													32	137					0	0	1	0	0
OR2T27	403239	broad.mit.edu	37	1	248814039	248814039	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:248814039G>A	uc010pzo.1	-	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTCTATGTGGATGAGAATGA	0.527000													12	43					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6472801	6472801	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr10:6472801C>T	uc001ijj.1	-	17	2011	c.1936G>A	c.(1936-1938)GAG>AAG	p.E646K	PRKCQ_uc009xim.1_Missense_Mutation_p.E583K|PRKCQ_uc001iji.1_Missense_Mutation_p.E679K|PRKCQ_uc009xin.1_Missense_Mutation_p.E610K|PRKCQ_uc010qax.1_Missense_Mutation_p.E521K	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	646	AGC-kinase C-terminal.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GGGTCAATCTCCTTCCGTTCA	0.607000													19	32					0	0	1	0	0
CUBN	8029	broad.mit.edu	37	10	16990582	16990582	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr10:16990582G>A	uc001ioo.2	-	35	5156	c.5104C>T	c.(5104-5106)CCC>TCC	p.P1702S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1702	CUB 11.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATAGGATGGGGCATGTCGGTG	0.493000													3	27					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508414	37508414	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr10:37508414G>A	uc001iza.1	+	34	3705	c.3606G>A	c.(3604-3606)AGG>AGA	p.R1202R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1258						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGCTCAAAGGAAATCCAAAA	0.368000													17	34					0	0	1	0	0
DEAF1	10522	broad.mit.edu	37	11	681007	681007	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:681007G>A	uc001lqq.1	-	7	1646	c.953C>T	c.(952-954)TCC>TTC	p.S318F	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	318					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		GTTCTTGGGGGAGTCCTTCTT	0.527000													17	39					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6977370	6977370	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:6977370T>C	uc001mey.2	+	7	1750	c.1162T>C	c.(1162-1164)TTC>CTC	p.F388L	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Missense_Mutation_p.F150L|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	388	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TGGGAAAGCCTTCTGCCGAAG	0.383000													31	34					0	0	1	0	0
OR10A3	26496	broad.mit.edu	37	11	7960730	7960730	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:7960730A>C	uc010rbi.1	-	1	338	c.338T>G	c.(337-339)TTT>TGT	p.F113C		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCCAGGAGAAAACATTCAGT	0.408000													59	88					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956224	18956224	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:18956224G>A	uc001mpg.2	-	1	326	c.108C>T	c.(106-108)ATC>ATT	p.I36I		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	36	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CAAGGGAAACGATGCACGTCA	0.557000													53	173					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62299059	62299059	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:62299059G>A	uc001ntl.2	-	5	3130	c.2830C>T	c.(2830-2832)CCC>TCC	p.P944S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	944					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GAGATCTTGGGGGCCTTGATA	0.473000													110	152					0	0	1	0	0
PPFIA1	8500	broad.mit.edu	37	11	70179621	70179621	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:70179621G>A	uc001opo.2	+	10	1456	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K	PPFIA1_uc001opn.1_Missense_Mutation_p.E420K|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	420	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			ACGACAGATGGAAGCACAGTT	0.537000													9	35					0	0	1	0	0
INPPL1	3636	broad.mit.edu	37	11	71941316	71941316	+	Splice_Site	SNP	G	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:71941316G>C	uc001osf.2	+	9	1237	c.1090_splice	c.e9+1	p.I364_splice	INPPL1_uc001osg.2_Splice_Site_p.I122_splice	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1						actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CACGACCGCAGTGAGCCAGGG	0.692000													8	36					0	0	1	0	0
APOA4	337	broad.mit.edu	37	11	116691731	116691731	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:116691731C>T	uc001pps.1	-	3	1147	c.1043G>A	c.(1042-1044)AGG>AAG	p.R348K		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GACCTTGTCCCTCAGGTCCTT	0.502000													23	27					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119043077	119043077	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:119043077C>T	uc001pvu.2	+	3	298	c.83C>T	c.(82-84)CCC>CTC	p.P28L	NLRX1_uc010rzc.1_Intron|NLRX1_uc001pvv.2_Missense_Mutation_p.P28L|NLRX1_uc001pvw.2_Missense_Mutation_p.P28L|NLRX1_uc001pvx.2_Missense_Mutation_p.P28L	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	28					innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GATCGTATCCCCTTCCTGATC	0.527000													20	44					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121000846	121000846	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:121000846C>T	uc010rzo.1	+	9	2867	c.2867C>T	c.(2866-2868)TCT>TTT	p.S956F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	956					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTCTGTGACTCTGTGGCCCGG	0.597000													35	35					0	0	1	0	0
ETS1	2113	broad.mit.edu	37	11	128333448	128333448	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:128333448A>C	uc010sbs.1	-	7	1382	c.1066T>G	c.(1066-1068)TGG>GGG	p.W356G	ETS1_uc001qej.2_Missense_Mutation_p.W400G|ETS1_uc009zch.2_Missense_Mutation_p.W140G|ETS1_uc009zcg.2_Intron	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	356	ETS.				cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		TCTCCTGTCCAGCTGATAAAA	0.458000													37	44					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5915235	5915235	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:5915235C>T	uc001qnm.2	-	9	1033	c.961G>A	c.(961-963)GAT>AAT	p.D321N		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	326	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCATTCATATCGTCCTCTGGA	0.478000													16	26					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18837109	18837109	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:18837109C>T	uc010sid.1	-	14	1887	c.1696G>A	c.(1696-1698)GAA>AAA	p.E566K	PLCZ1_uc001rdv.3_Missense_Mutation_p.E462K|PLCZ1_uc001rdw.3_Missense_Mutation_p.E307K|PLCZ1_uc001rdu.1_Missense_Mutation_p.E348K|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	566	C2.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CCAAGAAATTCATTTCCTGCT	0.333000													23	74					0	0	1	0	0
OR6C65	403282	broad.mit.edu	37	12	55794578	55794578	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:55794578C>T	uc010spl.1	+	1	266	c.266C>T	c.(265-267)ACC>ATC	p.T89I		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAGACACAACCATTTCCTAT	0.353000													37	120					0	0	1	0	0
OR6C68	403284	broad.mit.edu	37	12	55886345	55886345	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:55886345C>A	uc010spo.1	+	1	199	c.199C>A	c.(199-201)CAA>AAA	p.Q67K		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTTTTTCTCCAAAATTTATC	0.363000													50	125					4.86159e-25	4.93138e-25	1	1	0
ITGA7	3679	broad.mit.edu	37	12	56087025	56087025	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:56087025T>C	uc001shh.2	-	20	2844	c.2624A>G	c.(2623-2625)AAT>AGT	p.N875S	ITGA7_uc001shg.2_Missense_Mutation_p.N871S|ITGA7_uc010sps.1_Missense_Mutation_p.N778S|ITGA7_uc009znw.2_Missense_Mutation_p.N118S|ITGA7_uc009znx.2_Missense_Mutation_p.N752S	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	915	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCACTTCCCATTGGCAATCTC	0.577000													27	56					0	0	1	0	0
ZC3H10	84872	broad.mit.edu	37	12	56515570	56515570	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:56515570C>T	uc001sjp.1	+	3	1413	c.1224C>T	c.(1222-1224)ATC>ATT	p.I408I		NM_032786	NP_116175	Q96K80	ZC3HA_HUMAN	zinc finger CCCH-type containing 10	408							nucleic acid binding|zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.12)			TGGCAGGAATCACAATGAGCC	0.587000													10	36					0	0	1	0	0
ZNF605	100289635	broad.mit.edu	37	12	133502309	133502309	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr12:133502309T>A	uc001ulh.2	-	5	1901	c.1576A>T	c.(1576-1578)ATT>TTT	p.I526F	ZNF605_uc001uli.2_Missense_Mutation_p.I557F|ZNF605_uc001ulj.2_Missense_Mutation_p.I526F	NM_183238	NP_899061	Q86T29	ZN605_HUMAN	zinc finger protein 605 isoform 1	526	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00227)|all_epithelial(31;0.142)		OV - Ovarian serous cystadenocarcinoma(86;9.24e-09)|Epithelial(86;2.11e-07)|all cancers(50;5.27e-06)		CCTGTATGAATTCTCTGATGC	0.423000													43	87					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19636750	19636750	+	RNA	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr13:19636750G>A	uc001umb.1	-	6		c.832C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						ACTTCACATGGGTTTTCTCAT	0.542000													9	12					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28608113	28608113	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr13:28608113G>A	uc001urw.2	-	15	1935	c.1853C>T	c.(1852-1854)TCA>TTA	p.S618L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S618L	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	618	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G617_S618ins21(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AAAAGCACCTGATCCTAGTAC	0.403000			Mis|O		AML|ALL								69	145					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94780401	94780401	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr14:94780401G>A	uc001ycv.2	-	2	689	c.585C>T	c.(583-585)CTC>CTT	p.L195L	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	195					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TGACCAGGACGAGGATGGCTG	0.498000													27	86					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791075	106791075	+	RNA	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr14:106791075G>A	uc010tyt.1	-	386		c.14543C>T								Parts of antibodies, mostly variable regions.												0						CGTGTTCTTGGAATTGTCTCT	0.502000													73	814					0	0	1	0	0
BCL8	606	broad.mit.edu	37	15	20874863	20874863	+	Missense_Mutation	SNP	T	C	C	rs62000628	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:20874863T>C	uc010tze.1	-	3	482	c.275A>G	c.(274-276)CAC>CGC	p.H92R	BCL8_uc010tzd.1_RNA	NR_027992				RecName: Full=Putative protein BCL8;												0						TATTTTAAGGTGTGCATTATC	0.348000													5	94					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937419	21937419	+	RNA	SNP	A	T	T	rs7179663	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:21937419A>T	uc010tzj.1	-	1		c.3321T>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CTATGCTCACAATAGTTCTTA	0.378000													10	192					0	0	1	0	0
GABRA5	2558	broad.mit.edu	37	15	27193269	27193269	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:27193269C>T	uc001zbd.1	+	12	1617	c.1278C>T	c.(1276-1278)GAC>GAT	p.D426D	GABRA5_uc001zbe.1_RNA	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	426	Cytoplasmic (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GCAAAATTGACAAAATGTCCC	0.448000													6	31					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54825182	54825182	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:54825182G>A	uc002ack.2	+	24	5614	c.5614G>A	c.(5614-5616)GGA>AGA	p.G1872R		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1872					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GAGAGCAAATGGAAACACCAC	0.303000													7	10					0	0	1	0	0
MTFMT	123263	broad.mit.edu	37	15	65298462	65298462	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:65298462G>A	uc002aof.3	-	7	907	c.881C>T	c.(880-882)TCA>TTA	p.S294L		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	294						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	AGCAAGGACTGAACTGTTAAC	0.368000													10	39					0	0	1	0	0
CELF6	60677	broad.mit.edu	37	15	72579703	72579703	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:72579703G>A	uc002auh.2	-	12	1659	c.1349C>T	c.(1348-1350)GCC>GTC	p.A450V	uc002aug.2_Intron|CELF6_uc002auk.3_RNA|CELF6_uc010biv.1_RNA|CELF6_uc010biw.2_Missense_Mutation_p.A337V|CELF6_uc010ukl.1_Missense_Mutation_p.A313V|CELF6_uc010ukm.1_Missense_Mutation_p.A423V|CELF6_uc002aui.2_Missense_Mutation_p.A556V|CELF6_uc002auj.2_Missense_Mutation_p.A337V	NM_052840	NP_443072	Q96J87	CELF6_HUMAN	bruno-like 6, RNA binding protein	450	RRM 3.				mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3						AGCAGTCTGGGCACTAGTTGG	0.532000													28	70					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3832835	3832835	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr16:3832835G>A	uc002cvv.2	-	6	1627	c.1423C>T	c.(1423-1425)CCC>TCC	p.P475S	CREBBP_uc002cvw.2_Missense_Mutation_p.P437S	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	475					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGGTCTATGGGATTTGGGTTA	0.542000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				27	60					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20944735	20944735	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr16:20944735G>A	uc010vbe.1	-	62	12092	c.12092C>T	c.(12091-12093)ACG>ATG	p.T4031M	DNAH3_uc010vbd.1_Missense_Mutation_p.T1466M	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	4031					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AATCTGCATCGTTTTCCTGTC	0.507000													40	88					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1584067	1584067	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:1584067A>T	uc002fte.2	-	8	1165	c.1051T>A	c.(1051-1053)TAC>AAC	p.Y351N		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	351						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GGGTCAAAGTAGAAAGCTGGC	0.473000													37	99					0	0	1	0	0
OR3A2	4995	broad.mit.edu	37	17	3181519	3181519	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:3181519G>A	uc002fvg.2	-	1	750	c.711C>T	c.(709-711)ATC>ATT	p.I237I		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						CCACTGAACGGATTCGTAGAA	0.522000													31	46					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7227580	7227580	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:7227580T>C	uc002gga.1	-	11	1916	c.1909A>G	c.(1909-1911)ACG>GCG	p.T637A	NEURL4_uc002ggb.1_Missense_Mutation_p.T637A|NEURL4_uc002ggc.1_5'UTR	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	637	NHR 3.			T -> A (in Ref. 2; CAB66804).			protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACGCCCACCGTGTCCCCTGCC	0.657000											OREG0024134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	41					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7701964	7701964	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:7701964C>T	uc002giu.1	+	54	8501	c.8487C>T	c.(8485-8487)TTC>TTT	p.F2829F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2829	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ATGAGTCCTTCCTAGAGGACA	0.522000													30	36					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10350413	10350413	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:10350413G>A	uc002gmn.2	-	35	5197	c.5086C>T	c.(5086-5088)CTG>TTG	p.L1696L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1696	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTCCGTTCCAGGGATGCCCTG	0.517000													45	93					0	0	1	0	0
FLOT2	2319	broad.mit.edu	37	17	27210166	27210166	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:27210166G>A	uc002hdc.2	-	4	429	c.306C>T	c.(304-306)GTC>GTT	p.V102V		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	102					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			TCTGCAGGACGACGTTTTTGA	0.572000													37	84					0	0	1	0	0
CCDC55	84081	broad.mit.edu	37	17	28445171	28445171	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:28445171G>A	uc002heu.2	+	2	122	c.94G>A	c.(94-96)GAT>AAT	p.D32N	CCDC55_uc002hev.2_5'UTR|CCDC55_uc010wbl.1_Intron|CCDC55_uc010wbm.1_Intron|hsa-mir-3184|MI0014226_5'Flank	NM_032141	NP_115517	Q9H0G5	NSRP1_HUMAN	coiled-coil domain containing 55 isoform 1	32	Poly-Asp.				developmental process|nucleocytoplasmic transport|regulation of alternative nuclear mRNA splicing, via spliceosome	nuclear speck|ribonucleoprotein complex	mRNA binding|protein binding				0						GTTTGGGAATGATTCTGATGA	0.338000													43	99					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35518799	35518799	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:35518799G>A	uc002hnm.2	-	42	5325	c.5134C>T	c.(5134-5136)CCA>TCA	p.P1712S	ACACA_uc002hnk.2_Missense_Mutation_p.P1634S|ACACA_uc002hnl.2_Missense_Mutation_p.P1654S|ACACA_uc002hnn.2_Missense_Mutation_p.P1712S|ACACA_uc002hno.2_Missense_Mutation_p.P1749S|ACACA_uc010cuy.2_Missense_Mutation_p.P357S|ACACA_uc010wdc.1_5'UTR	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1712	Carboxyltransferase.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TAGATGCGTGGAATACCTTCT	0.463000													40	123					0	0	1	0	0
C17orf98	388381	broad.mit.edu	37	17	36997591	36997592	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:36997591_36997592CC>TT	uc002hqv.2	-	1	51_52	c.51_52GG>AA	c.(49-54)TTGGAC>TTAAAC	p.D18N		NM_001080465	NP_001073934	A8MV24	CQ098_HUMAN	hypothetical protein LOC388381	18											0						GCCACCCCGTCCAAGATAAAGC	0.644000													13	39					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56343598	56343598	+	Missense_Mutation	SNP	G	A	A	rs144914036	byFrequency	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:56343598G>A	uc002ivt.2	+	11	1920	c.1604G>A	c.(1603-1605)CGC>CAC	p.R535H	LPO_uc010wns.1_Missense_Mutation_p.R476H|LPO_uc010dcp.2_Missense_Mutation_p.R452H|LPO_uc010dcq.2_Missense_Mutation_p.R206H|LPO_uc010dcr.2_Missense_Mutation_p.R98H	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	535					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GGAGAGCTGCGCAACAAGCTT	0.547000													15	37					0	0	1	0	0
DHX40	79665	broad.mit.edu	37	17	57665412	57665412	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:57665412C>T	uc002ixn.1	+	12	1727	c.1580C>T	c.(1579-1581)CCT>CTT	p.P527L	DHX40_uc010woe.1_Missense_Mutation_p.P450L|DHX40_uc010wof.1_Missense_Mutation_p.P42L	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	527							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TTCATTAGACCTGGTAAGATG	0.259000													14	60					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71335029	71335029	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:71335029G>A	uc010dfm.2	-	45	6216	c.6216C>T	c.(6214-6216)TCC>TCT	p.S2072S	SDK2_uc002jjt.3_Silent_p.S1212S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	2072	Cytoplasmic (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GGTTGACAAAGGAGTGGGCCT	0.592000													18	38					0	0	1	0	0
RHBDF2	79651	broad.mit.edu	37	17	74475323	74475323	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr17:74475323C>A	uc002jrq.1	-	5	689	c.396G>T	c.(394-396)TGG>TGT	p.W132C	RHBDF2_uc002jrp.1_Missense_Mutation_p.W103C|RHBDF2_uc002jrr.1_5'UTR|RHBDF2_uc010wtf.1_Missense_Mutation_p.W103C|RHBDF2_uc002jrs.1_Missense_Mutation_p.W103C	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	132	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						GCTGCCCCTCCCAGTCGCCGC	0.677000													5	11					0.000602214	0.000605068	1	1	0
POTEC	388468	broad.mit.edu	37	18	14511989	14511989	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr18:14511989A>G	uc010dln.2	-	11	1991	c.1537T>C	c.(1537-1539)TCT>CCT	p.S513P	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	513	Potential.									skin(3)	3						TGACTAAGAGAAAGCTAAGTA	0.318000													11	36					0	0	1	0	0
ZNF521	25925	broad.mit.edu	37	18	22806092	22806092	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr18:22806092T>C	uc002kvk.2	-	4	2037	c.1790A>G	c.(1789-1791)AAT>AGT	p.N597S	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.N597S|ZNF521_uc002kvl.2_Missense_Mutation_p.N377S	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	597					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TTTCTTCCCATTGTGGATATA	0.443000			T	PAX5	ALL								27	46					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56586580	56586580	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr18:56586580C>T	uc002lho.2	+	4	1608	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	ZNF532_uc002lhp.2_Missense_Mutation_p.S352F|ZNF532_uc010xeg.1_Missense_Mutation_p.S352F|ZNF532_uc002lhr.2_Missense_Mutation_p.S352F|ZNF532_uc002lhs.2_Missense_Mutation_p.S352F	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	354					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CCCGCAGGGTCCACACCAGCA	0.507000													22	81					0	0	1	0	0
RTTN	25914	broad.mit.edu	37	18	67753871	67753871	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr18:67753871A>C	uc002lkp.2	-	32	4420	c.4352T>G	c.(4351-4353)ATT>AGT	p.I1451S	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Missense_Mutation_p.I539S	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1451							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				ATCCTTTATAATTTCTGTAGG	0.254000													66	152					0	0	1	0	0
SAFB2	9667	broad.mit.edu	37	19	5592769	5592769	+	Silent	SNP	G	A	A	rs138974953	byFrequency	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr19:5592769G>A	uc002mcd.2	-	16	2549	c.2337C>T	c.(2335-2337)CAC>CAT	p.H779H		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	779	Arg-rich.|Interacts with SAFB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		TGTCGATGGCGTGGTCCTGGT	0.602000													3	19					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6908743	6908743	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr19:6908743A>G	uc002mfw.2	+	10	1120	c.1082A>G	c.(1081-1083)GAC>GGC	p.D361G	EMR1_uc010dvc.2_Missense_Mutation_p.D361G|EMR1_uc010dvb.2_Missense_Mutation_p.D309G|EMR1_uc010xji.1_Missense_Mutation_p.D220G|EMR1_uc010xjj.1_Missense_Mutation_p.D184G	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	361	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AGCGTTCTGGACAAAGTGTGT	0.388000													42	60					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935484	30935484	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr19:30935484G>A	uc002nsu.1	+	2	1153	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	ZNF536_uc010edd.1_Missense_Mutation_p.E339K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGGCGGTGGCGAGCAGTCGGC	0.647000													37	78					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48806008	48806008	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr19:48806008C>T	uc002pir.2	-	10	1755	c.1072G>A	c.(1072-1074)GAG>AAG	p.E358K	CCDC114_uc002piq.2_Missense_Mutation_p.E167K|CCDC114_uc002pio.2_Missense_Mutation_p.E395K|CCDC114_uc002pis.1_Missense_Mutation_p.E38K|CCDC114_uc002pit.1_Missense_Mutation_p.E395K	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	358	Potential.									ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		TCAAGGCGCTCAGCCTCCGAG	0.637000													22	39					0	0	1	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49967975	49967975	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr19:49967975C>T	uc002pnt.2	+	12	1640	c.1524C>T	c.(1522-1524)CTC>CTT	p.L508L	ALDH16A1_uc010yar.1_Silent_p.L457L|ALDH16A1_uc010yas.1_Silent_p.L343L|ALDH16A1_uc010yat.1_Silent_p.L345L	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	508							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CCTTTGGCCTCGCTGTTCCCT	0.622000													52	73					0	0	1	0	0
GNLY	10578	broad.mit.edu	37	2	85922457	85922457	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:85922457C>T	uc002sql.3	+	2	195	c.67C>T	c.(67-69)CGT>TGT	p.R23C	GNLY_uc010fgp.2_Missense_Mutation_p.R8C|GNLY_uc010ysx.1_Missense_Mutation_p.R50C	NM_006433	NP_006424	P22749	GNLY_HUMAN	granulysin isoform NKG5	23					cellular defense response|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0						GGTCTTCTCTCGTCTGAGCCC	0.627000													12	22					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111666450	111666450	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:111666450G>A	uc002tgr.3	+	11	1097	c.873G>A	c.(871-873)CTG>CTA	p.L291L	ACOXL_uc010fkc.2_Silent_p.L291L|ACOXL_uc010yxk.1_Silent_p.L291L	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	291					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TGCCCCACCTGGCCACAGCCT	0.542000													23	56					0	0	1	0	0
ERCC3	2071	broad.mit.edu	37	2	128047035	128047035	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:128047035G>C	uc002toh.1	-	6	795	c.700C>G	c.(700-702)CGA>GGA	p.R234G	ERCC3_uc002toe.1_5'UTR|ERCC3_uc002tof.1_Missense_Mutation_p.R170G|ERCC3_uc002tog.1_Missense_Mutation_p.R170G|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	234					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TCTGTCACTCGGGAAGTGGAG	0.468000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				16	64					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200685	132200685	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:132200685G>A	uc002tst.2	-	1	1783	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CAGAGACGCCGAAGGAAACCC	0.617000													7	8					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566630	136566630	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:136566630G>A	uc002tuu.1	-	8	3298	c.3287C>T	c.(3286-3288)GCC>GTC	p.A1096V		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1096	3.|Extracellular (Potential).|4 X approximate repeats.			A -> T (in Ref. 1; CAA30801).	carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TTTGATGACGGCGTGGGCTAT	0.552000													27	48					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149247692	149247692	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:149247692C>T	uc002twm.3	+	12	4780	c.3792C>T	c.(3790-3792)TTC>TTT	p.F1264F	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Silent_p.F1264F|MBD5_uc002two.2_Silent_p.F522F|MBD5_uc002twp.2_Silent_p.F314F	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1264						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		AGGAAAATTTCAGGTATAATA	0.408000													29	73					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152554150	152554150	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:152554150C>T	uc010fnx.2	-	14	1356	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	389	Nebulin 9.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCATAGTTTTCCTTGTATAGT	0.348000													14	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179433209	179433209	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:179433209C>T	uc010zfg.1	-	275	70170	c.69946G>A	c.(69946-69948)GAA>AAA	p.E23316K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E17011K|TTN_uc010zfi.1_Missense_Mutation_p.E16944K|TTN_uc010zfj.1_Missense_Mutation_p.E16819K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24243							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTACAATTTCGATGGATGCT	0.388000													23	67					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179505268	179505268	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:179505268C>T	uc010zfg.1	-	170	33243	c.33019G>A	c.(33019-33021)GTG>ATG	p.V11007M	TTN_uc010zfh.1_Missense_Mutation_p.V4702M|TTN_uc010zfi.1_Missense_Mutation_p.V4635M|TTN_uc010zfj.1_Missense_Mutation_p.V4510M|TTN_uc010fre.1_Missense_Mutation_p.V885M|TTN_uc002umw.1_RNA|TTN_uc002umx.1_Missense_Mutation_p.V222M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11934							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATTTGTACCTTTTGTTGGT	0.338000													56	83					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179702223	179702223	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:179702223G>A	uc002unf.1	-	13	2055	c.1998C>T	c.(1996-1998)TCC>TCT	p.S666S	CCDC141_uc002une.1_Silent_p.S116S	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	666							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GAAGGCTGAGGGAGGAGCTGA	0.587000													18	47					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798382	185798382	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:185798382C>T	uc002uph.2	+	3	902	c.308C>T	c.(307-309)TCC>TTC	p.S103F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	103						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GCATCTAAATCCAGGAAAGAT	0.373000													34	47					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800759	185800759	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:185800759C>T	uc002uph.2	+	4	1230	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	212						intracellular	zinc ion binding	p.I212I(1)		ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GACACAAAATCGGCTTTTCTT	0.438000													33	98					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191899303	191899303	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:191899303C>T	uc002usm.1	-	18	1845	c.1591G>A	c.(1591-1593)GGT>AGT	p.G531S	STAT4_uc002usn.1_Missense_Mutation_p.G531S|STAT4_uc010zgk.1_Missense_Mutation_p.G376S|STAT4_uc002uso.2_Missense_Mutation_p.G531S	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	531					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GTGAGGTGACCATCACTGTAG	0.358000													32	101					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173455	207173455	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:207173455G>A	uc002vbp.2	+	5	4453	c.4203G>A	c.(4201-4203)AAG>AAA	p.K1401K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1401							nucleic acid binding|zinc ion binding			ovary(3)	3						TGGAAGATAAGAGCTATAAAT	0.358000													18	37					0	0	1	0	0
LANCL1	10314	broad.mit.edu	37	2	211300993	211300994	+	Silent	DNP	GG	AA	AA	rs141302000	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:211300993_211300994GG>AA	uc010zjh.1	-	8	1071_1072	c.996_997CC>TT	c.(994-999)TTCCTG>TTTTTG	p.332_333FL>FL	LANCL1_uc002ved.2_Silent_p.332_333FL>FL|LANCL1_uc010fuq.2_Silent_p.332_333FL>FL	NM_001136574	NP_001130046	O43813	LANC1_HUMAN	lanthionine synthetase C-like protein 1	332_333						cytoplasm|integral to plasma membrane|microtubule cytoskeleton|nucleus	catalytic activity|G-protein coupled receptor activity|glutathione binding|low-density lipoprotein particle receptor binding|SH3 domain binding|zinc ion binding				0				Epithelial(149;0.00562)|Lung(261;0.0468)|LUSC - Lung squamous cell carcinoma(261;0.0495)|all cancers(144;0.0569)		TAGAGTGTCAGGAAGGCATAGG	0.450000													33	81					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219256178	219256178	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr2:219256178C>T	uc002vhv.2	+	11	1464	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	SLC11A1_uc010fvp.1_Missense_Mutation_p.S375F|SLC11A1_uc010fvq.1_Missense_Mutation_p.S308F|SLC11A1_uc010zkc.1_Missense_Mutation_p.S308F|SLC11A1_uc002vhu.1_Missense_Mutation_p.S170F|SLC11A1_uc002vhw.2_Missense_Mutation_p.S257F|SLC11A1_uc010fvr.2_Missense_Mutation_p.S170F	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	375	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCAGAGCTCCACCATGACG	0.677000													6	10					0	0	1	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492807	21492807	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr20:21492807C>T	uc002wsi.2	-	2	933	c.576G>A	c.(574-576)ATG>ATA	p.M192I		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	192					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GCGTCACCTCCATACCTTTCT	0.667000													14	28					0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869182	36869182	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr20:36869182G>A	uc002xhy.1	-	3	1623	c.1351C>T	c.(1351-1353)CCC>TCC	p.P451S	KIAA1755_uc002xhz.1_Missense_Mutation_p.P451S	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	451										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				ATGGGCTTGGGAAGTCTCCCA	0.567000													44	72					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43052726	43052726	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr20:43052726G>A	uc002xma.2	+	8	1050	c.961G>A	c.(961-963)GAC>AAC	p.D321N	HNF4A_uc002xlt.2_Missense_Mutation_p.D299N|HNF4A_uc002xlu.2_Missense_Mutation_p.D299N|HNF4A_uc002xlv.2_Missense_Mutation_p.D299N|HNF4A_uc002xly.2_Missense_Mutation_p.D321N|HNF4A_uc002xlz.2_Missense_Mutation_p.D321N|HNF4A_uc010ggq.2_Missense_Mutation_p.D314N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	321					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GAGCTTGGAGGACTACATCAA	0.602000													7	21					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871160	51871160	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr20:51871160C>T	uc002xwo.2	+	2	2119	c.1163C>T	c.(1162-1164)TCC>TTC	p.S388F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	388	C2H2-type 3; atypical.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGTGGGAGCTCCCATGACACC	0.532000													36	74					0	0	1	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011539	46011539	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr21:46011539G>A	uc002zfm.2	-	1	848	c.827C>T	c.(826-828)TCT>TTT	p.S276F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	276	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGAAGCCCCAGAGCAGACGGG	0.647000													56	156					0	0	1	0	0
PVALB	5816	broad.mit.edu	37	22	37211171	37211171	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr22:37211171C>T	uc010gwz.2	-	2	200	c.170G>A	c.(169-171)GGC>GAC	p.G57D	PVALB_uc003apx.2_Missense_Mutation_p.G57D	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	57	1.|EF-hand 1.						calcium ion binding			skin(1)	1						CTCGATGAAGCCACTTTTGTC	0.557000													19	33					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37770283	37770283	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr22:37770283G>A	uc003asq.3	-	3	2078	c.1292C>T	c.(1291-1293)TCT>TTT	p.S431F		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	431	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GACGTTGACAGACTTCTGCTT	0.607000													37	86					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13381792	13381792	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:13381792G>A	uc003bxv.1	-	24	3318	c.3235C>T	c.(3235-3237)CCC>TCC	p.P1079S		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1079	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CTGAACGGGGGAAAGACCTGT	0.572000													5	23					0	0	1	0	0
PDCD6IP	10015	broad.mit.edu	37	3	33868069	33868069	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:33868069C>T	uc003cfx.2	+	6	869	c.714C>T	c.(712-714)CCC>CCT	p.P238P	PDCD6IP_uc011axv.1_Silent_p.P238P|PDCD6IP_uc003cfy.2_Silent_p.P238P|PDCD6IP_uc011axw.1_5'Flank	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	238	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						ATACTCTCCCCAAGGTCAGTT	0.313000													17	60					0	0	1	0	0
GMPPB	29925	broad.mit.edu	37	3	49759760	49759761	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:49759760_49759761GT>AC	uc003cxk.1	-	7	896_897	c.671_672AC>GT	c.(670-672)GAC>GGT	p.D224G	AMIGO3_uc003cxj.2_5'Flank|GMPPB_uc003cxl.1_Missense_Mutation_p.D224G	NM_021971	NP_068806	Q9Y5P6	GMPPB_HUMAN	GDP-mannose pyrophosphorylase B isoform 2	224					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CAGTGAGGAAGTCCTTGGGCTG	0.634000													10	43					0	0	1	0	0
FOXP1	27086	broad.mit.edu	37	3	71247407	71247407	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:71247407C>T	uc003dol.2	-	2	449	c.126G>A	c.(124-126)CCG>CCA	p.P42P	FOXP1_uc003dom.2_Silent_p.P42P|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.P42P|FOXP1_uc003dop.2_Silent_p.P42P|FOXP1_uc003doq.1_Silent_p.P42P|FOXP1_uc003dos.2_Silent_p.P42P	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	42					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		TGTCCACGGCCGGCGTCTCTC	0.632000			T	PAX5	ALL								22	128					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377521	113377522	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:113377521_113377522CC>TT	uc003eam.2	-	7	3418_3419	c.3007_3008GG>AA	c.(3007-3009)GGT>AAT	p.G1003N	KIAA2018_uc003eal.2_Missense_Mutation_p.G947N	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1003					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGTAGTTAAACCTTGCCCCTTT	0.381000													61	149					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118865231	118865231	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:118865231C>T	uc003ecb.1	+	1	235	c.195C>T	c.(193-195)TCC>TCT	p.S65S	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Silent_p.S65S	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	65										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		AGGCTGAATCCAGCATATTTA	0.522000													12	26					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121341969	121341969	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:121341969C>T	uc003eeg.2	+	3	1903	c.1693C>T	c.(1693-1695)CAT>TAT	p.H565Y		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	565					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TCTTTTGGGTCATGGAGGAAA	0.512000													37	86					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122634447	122634447	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:122634447C>T	uc003efz.1	-	14	2132	c.1828G>A	c.(1828-1830)GGG>AGG	p.G610R	SEMA5B_uc011bju.1_Missense_Mutation_p.G552R|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.G610R|SEMA5B_uc010hro.1_Missense_Mutation_p.G552R	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	610	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CCGAAGCCCCCATCCCGTGTC	0.572000													4	30					0	0	1	0	0
GOLIM4	27333	broad.mit.edu	37	3	167750415	167750415	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:167750415G>A	uc003ffe.2	-	9	1413	c.1069C>T	c.(1069-1071)CTT>TTT	p.L357F	GOLIM4_uc011bpe.1_Missense_Mutation_p.L357F|GOLIM4_uc011bpf.1_Missense_Mutation_p.L329F|GOLIM4_uc011bpg.1_Missense_Mutation_p.L329F	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	357	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TCCTCCTCAAGATGTTCTGCT	0.572000													48	147					0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186386822	186386822	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:186386822C>T	uc003fqq.2	+	2	305	c.282C>T	c.(280-282)TCC>TCT	p.S94S		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	94	Cystatin 1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CACCTGATTCCAGACGTCCAT	0.423000													52	115					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189587149	189587149	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:189587149C>T	uc003fry.2	+	9	1255	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	TP63_uc003frx.2_Missense_Mutation_p.S389F|TP63_uc003frz.2_Missense_Mutation_p.S389F|TP63_uc010hzc.1_Missense_Mutation_p.S389F|TP63_uc003fsa.2_Missense_Mutation_p.S295F|TP63_uc003fsb.2_Missense_Mutation_p.S295F|TP63_uc003fsc.2_Missense_Mutation_p.S295F|TP63_uc003fsd.2_Missense_Mutation_p.S295F|TP63_uc010hzd.1_Missense_Mutation_p.S210F|TP63_uc003fse.1_Missense_Mutation_p.S266F	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	389					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CAGATGACATCCATCAAGAAA	0.408000									Hay-Wells_syndrome	HNSCC(45;0.13)			17	47					0	0	1	0	0
ZNF595	152687	broad.mit.edu	37	4	59444	59444	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:59444C>T	uc003fzv.1	+	2	281	c.125C>T	c.(124-126)TCC>TTC	p.S42F	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.S42F|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	42					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		AACCTGGTCTCCCTGGGTGAG	0.433000													44	770					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8613798	8613798	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:8613798G>A	uc003glm.2	+	8	1398	c.1272G>A	c.(1270-1272)ATG>ATA	p.M424I	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.M287I|CPZ_uc003glo.2_Missense_Mutation_p.M413I|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	424					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCCACCCCATGATGATGGACA	0.562000													9	23					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815598	23815598	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:23815598G>A	uc003gqs.2	-	8	1628	c.1508C>T	c.(1507-1509)TCA>TTA	p.S503L	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	503					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGCTAGTCCTGAATTTATAAA	0.428000													40	131					0	0	1	0	0
SLC30A9	10463	broad.mit.edu	37	4	42077755	42077755	+	Silent	SNP	T	G	G			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:42077755T>G	uc003gwl.2	+	16	1646	c.1500T>G	c.(1498-1500)GTT>GTG	p.V500V	SLC30A9_uc011byx.1_Silent_p.V260V	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	500					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						ATGGGCGAGTTGTTACAAGAT	0.328000													24	55					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42122105	42122105	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:42122105G>A	uc003gwn.2	-	5	1933	c.1353C>T	c.(1351-1353)CGC>CGT	p.R451R	BEND4_uc003gwm.2_Intron|BEND4_uc011byy.1_Silent_p.R451R	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	451	BEN.										0						GATCCAGAGGGCGTCTTTCGG	0.502000													13	22					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68810234	68810234	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:68810234C>T	uc003hdr.1	-	3	376	c.255G>A	c.(253-255)GTG>GTA	p.V85V	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Intron	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	85	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TTACCTGACTCACCAAATTTT	0.294000													43	93					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79291087	79291087	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:79291087G>A	uc003hlb.2	+	23	3258	c.2818G>A	c.(2818-2820)GAG>AAG	p.E940K	FRAS1_uc003hkw.2_Missense_Mutation_p.E940K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	940	FU 11.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATGTCAATACGAGAGCTGCGC	0.478000													16	23					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545428	186545428	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr4:186545428G>A	uc003iyl.2	-	13	2001	c.1143C>T	c.(1141-1143)TCC>TCT	p.S381S	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.S481S|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.S285S|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.S495S|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	381						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CACAGCTCCGGGATTTGATTT	0.532000													20	60					0	0	1	0	0
SLC1A3	6507	broad.mit.edu	37	5	36680583	36680583	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:36680583G>A	uc003jkj.3	+	8	1657	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E	SLC1A3_uc011cox.1_Missense_Mutation_p.G287E|SLC1A3_uc010iuy.2_Missense_Mutation_p.G394E	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	394					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CTCCCCGTAGGAGCCACCATT	0.488000													29	63					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66478990	66478990	+	Missense_Mutation	SNP	G	A	A	rs150000308		TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:66478990G>A	uc003juy.2	-	3	1829	c.1681C>T	c.(1681-1683)CGT>TGT	p.R561C		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	561	LRR 19.|Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GGGAGGAGACGGGGTGAGATG	0.453000													19	50					0	0	1	0	0
AP3B1	8546	broad.mit.edu	37	5	77458735	77458735	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:77458735G>A	uc003kfj.2	-	13	1396	c.1271C>T	c.(1270-1272)ACT>ATT	p.T424I		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	424					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		AGTCTGAATAGTGGCTGCTGC	0.408000									Hermansky-Pudlak_syndrome				12	110					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78422045	78422045	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:78422045C>T	uc003kfu.3	+	6	907	c.802C>T	c.(802-804)CCA>TCA	p.P268S	BHMT_uc011cti.1_Missense_Mutation_p.P115S	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	268	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	CCCAGAATTCCCATTTGGTAA	0.433000													17	42					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135692572	135692572	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:135692572G>A	uc003lbn.1	-	1	504	c.501C>T	c.(499-501)ATC>ATT	p.I167I	TRPC7_uc010jef.1_Silent_p.I159I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I159I|TRPC7_uc010jei.1_Silent_p.I159I|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	168	Cytoplasmic (Potential).|ANK 4.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCGCCAGGATGATGGGCGTGA	0.637000													43	123					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594154	140594154	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:140594154T>A	uc003lja.1	+	1	646	c.459T>A	c.(457-459)TTT>TTA	p.F153L		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	153	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACTACGTTTCCTCTGAAGA	0.443000													54	114					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724441	140724441	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:140724441C>T	uc003ljm.1	+	1	841	c.841C>T	c.(841-843)CTA>TTA	p.L281L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.L41L|PCDHGA3_uc011dap.1_Silent_p.L281L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	281	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCTTATATTCTAGATAAAAT	0.448000													16	48					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174869119	174869119	+	Silent	SNP	G	A	A	rs141925440		TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:174869119G>A	uc003mcz.2	-	2	1929	c.984C>T	c.(982-984)CCC>CCT	p.P328P		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	328	Helical; Name=7; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	CATAAATGATGGGGTTCAAGG	0.483000													30	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	175572158	175572158	+	RNA	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:175572158C>T	uc003mdn.2	-	22		c.3147G>A								Homo sapiens cDNA clone IMAGE:5171181.																		AACACCACTTCATACTGAGGT	0.378000													3	14					0	0	1	0	0
FAM193B	54540	broad.mit.edu	37	5	176965996	176965996	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr5:176965996G>A	uc003mhs.3	-	3	1613	c.24C>T	c.(22-24)CTC>CTT	p.L8L	FAM193B_uc003mht.2_5'Flank|FAM193B_uc003mhu.2_5'Flank|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	121											0						TCTCGCCTAGGAGATTCTTGA	0.552000													29	72					0	0	1	0	0
PGBD1	84547	broad.mit.edu	37	6	28268987	28268987	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:28268987C>T	uc003nky.2	+	7	1726	c.1356C>T	c.(1354-1356)GTC>GTT	p.V452V	PGBD1_uc003nkz.2_Silent_p.V452V	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	452					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						GCTTGGAAGTCACAGTTCAGG	0.363000													89	164					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31930804	31930804	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:31930804C>T	uc003nyn.1	+	13	1728	c.1339C>T	c.(1339-1341)CAC>TAC	p.H447Y	SKIV2L_uc011dou.1_Missense_Mutation_p.H289Y|SKIV2L_uc011dov.1_Missense_Mutation_p.H254Y	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	447	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GCTACCTGACCACGTTTCTAT	0.607000													11	51					0	0	1	0	0
STK19	8859	broad.mit.edu	37	6	31939967	31939967	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:31939967G>A	uc003nyv.2	+	1	322	c.194G>A	c.(193-195)GGG>GAG	p.G65E	DOM3Z_uc003nyo.1_5'UTR|DOM3Z_uc003nyp.1_5'UTR|DOM3Z_uc003nyq.1_5'UTR|DOM3Z_uc003nyr.1_5'UTR|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'UTR|STK19_uc003nyt.2_5'UTR|DOM3Z_uc003nyu.1_5'UTR|STK19_uc011dow.1_Missense_Mutation_p.G65E|STK19_uc011dox.1_5'UTR|STK19_uc003nyw.2_Missense_Mutation_p.G65E|STK19_uc010jtn.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	65						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						GGCCGGCGTGGGGCCCGGCCT	0.701000													23	39					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43181615	43181615	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:43181615G>A	uc003ouk.2	+	29	5728	c.5653G>A	c.(5653-5655)GAA>AAA	p.E1885K	CUL9_uc003oul.2_Missense_Mutation_p.E1857K|CUL9_uc010jyk.2_Missense_Mutation_p.E1037K|CUL9_uc003oun.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1885					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						AGCCCATGGGGAAAAGGGCCT	0.527000													38	103					0	0	1	0	0
RCAN2	10231	broad.mit.edu	37	6	46216612	46216612	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:46216612G>A	uc003oyb.1	-	2	424	c.109C>T	c.(109-111)CGG>TGG	p.R37W	RCAN2_uc003oyc.1_Missense_Mutation_p.R83W|RCAN2_uc003oyd.1_Missense_Mutation_p.R83W	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	37					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						TCATAAGTCCGAAACAGTCCC	0.403000													21	48					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46825899	46825899	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:46825899G>A	uc003oyo.3	-	17	4030	c.3741C>T	c.(3739-3741)TTC>TTT	p.F1247F	GPR116_uc011dwj.1_Silent_p.F802F|GPR116_uc011dwk.1_Silent_p.F676F|GPR116_uc003oyp.3_Silent_p.F1105F|GPR116_uc003oyq.3_Silent_p.F1247F|GPR116_uc010jzi.1_Silent_p.F919F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1247	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ATATGATATGGAACACAAGGT	0.453000													28	80					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47200581	47200581	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:47200581C>T	uc003oyv.2	-	6	2321	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	630	Cytoplasmic (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CCAATAATTTCGAATAGCCGG	0.493000													58	129					0	0	1	0	0
IL17A	3605	broad.mit.edu	37	6	52052534	52052534	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:52052534G>A	uc003pak.1	+	2	206	c.161G>A	c.(160-162)CGG>CAG	p.R54Q		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	54					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					ATCCATAACCGGAATACCAAT	0.458000													43	152					0	0	1	0	0
RWDD1	51389	broad.mit.edu	37	6	116911443	116911443	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:116911443C>T	uc003pxd.2	+	5	586	c.423C>T	c.(421-423)TTC>TTT	p.F141F	RWDD1_uc003pxb.2_Silent_p.F45F|RWDD1_uc003pxc.2_Silent_p.F45F	NM_015952	NP_057036	Q9H446	RWDD1_HUMAN	RWD domain containing 1 isoform a	141							protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.0312)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)|Epithelial(106;0.161)		AGCAATTATTCCATGGTACTC	0.294000													15	23					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129722465	129722465	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:129722465G>A	uc003qbn.2	+	38	5647	c.5542G>A	c.(5542-5544)GAA>AAA	p.E1848K	LAMA2_uc003qbo.2_Missense_Mutation_p.E1848K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1848	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCTTGCAGATGAAATCAACTC	0.398000													36	50					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761678	130761678	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:130761678G>A	uc003qca.2	+	3	982	c.111G>A	c.(109-111)AAG>AAA	p.K37K	TMEM200A_uc010kfh.2_Silent_p.K37K|TMEM200A_uc010kfi.2_Silent_p.K37K|TMEM200A_uc003qcb.2_Silent_p.K37K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	37	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CCCAAGAGAAGAAGCCCATCA	0.537000													46	79					0	0	1	0	0
RAET1G	353091	broad.mit.edu	37	6	150240199	150240199	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr6:150240199G>A	uc010kii.1	-	3	679	c.611C>T	c.(610-612)ACC>ATC	p.T204I	uc003qni.1_Intron|RAET1G_uc003qnm.2_RNA	NM_001001788	NP_001001788	Q6H3X3	RET1G_HUMAN	retinoic acid early transcript 1G precursor	204	Extracellular (Potential).|MHC class I alpha-2 like.				antigen processing and presentation|immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.73e-12)		TGGCTCCAGGGTGCTGTCCAT	0.463000													63	83					0	0	1	0	0
LOC402644	402644	broad.mit.edu	37	7	28319007	28319007	+	Silent	SNP	T	A	A	rs177483	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:28319007T>A	uc010kuz.1	-	1	312	c.312A>T	c.(310-312)GGA>GGT	p.G104G		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						TTGTGTTGGGTCCAGAATTTG	0.463000													8	97					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43519247	43519247	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:43519247C>T	uc003tid.1	+	17	3743	c.3138C>T	c.(3136-3138)TTC>TTT	p.F1046F	HECW1_uc011kbi.1_Silent_p.F1012F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1046	WW 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CTACCACTTTCATTGACCCCC	0.507000													47	164					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47897388	47897388	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:47897388A>T	uc003tny.1	-	28	4405	c.4405T>A	c.(4405-4407)TTC>ATC	p.F1469I		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1469	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGGGTCCGGAACTCCATCTGC	0.498000													14	46					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86394597	86394597	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:86394597C>T	uc003uid.2	+	2	1235	c.136C>T	c.(136-138)CCT>TCT	p.P46S	GRM3_uc010lef.2_Missense_Mutation_p.P44S|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	46	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GGGCCTGTTTCCTATTAACGA	0.408000													92	115					0	0	1	0	0
PDK4	5166	broad.mit.edu	37	7	95217061	95217061	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:95217061C>T	uc003uoa.2	-	8	1168	c.848G>A	c.(847-849)GGA>GAA	p.G283E	PDK4_uc003unz.2_Missense_Mutation_p.G71E	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	283	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			GTCTTCTTTTCCCAAGACAAC	0.388000													43	62					0	0	1	0	0
SND1	27044	broad.mit.edu	37	7	127484404	127484404	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:127484404C>T	uc003vmi.2	+	12	1496	c.1270C>T	c.(1270-1272)CCA>TCA	p.P424S	SND1_uc010lle.2_Missense_Mutation_p.P77S	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	424	TNase-like 3.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CTACATTAGACCAGCCAGCCC	0.522000													19	28					0	0	1	0	0
C7orf45	136263	broad.mit.edu	37	7	129856273	129856273	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:129856273C>T	uc003vpp.2	+	3	745	c.698C>T	c.(697-699)TCC>TTC	p.S233F		NM_145268	NP_660311	Q8WWF3	CG045_HUMAN	hypothetical protein LOC136263	233						integral to membrane					0	Melanoma(18;0.0435)					GAGGAAAGTTCCATATCTGAC	0.383000													133	212					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				75	98					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30695081	30695081	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr8:30695081G>A	uc003xil.2	-	3	7570	c.7570C>T	c.(7570-7572)CCT>TCT	p.P2524S		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2524										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TCTAGATCAGGATGGACATCT	0.373000													31	96					0	0	1	0	0
SNX16	64089	broad.mit.edu	37	8	82715355	82715355	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr8:82715355G>A	uc011lft.1	-	7	1297	c.790C>T	c.(790-792)CAT>TAT	p.H264Y	SNX16_uc003ycn.2_Missense_Mutation_p.H264Y|SNX16_uc003yco.2_Missense_Mutation_p.H235Y	NM_022133	NP_071416	P57768	SNX16_HUMAN	sorting nexin 16 isoform a	264	Potential.				cell communication|early endosome to late endosome transport|endosome to lysosome transport|protein targeting to lysosome	early endosome membrane|extrinsic to endosome membrane|late endosome membrane|lysosome	identical protein binding|phosphatidylinositol binding			ovary(1)|pancreas(1)	2						GTGTCTATATGAAGTTGCTTC	0.368000													29	84					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101105711	101105711	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr8:101105711G>A	uc003yjb.1	-	3	276	c.81C>T	c.(79-81)TTC>TTT	p.F27F	RGS22_uc003yja.1_5'UTR|RGS22_uc003yjc.1_Silent_p.F27F|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	27					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGTCTACAAGGAAATCATCTG	0.264000													35	86					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110100287	110100287	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr8:110100287G>A	uc003ymz.3	+	1	562	c.546G>A	c.(544-546)AAG>AAA	p.K182K		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	182	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GTGGCTACAAGATCTCCAGGA	0.413000													34	100					0	0	1	0	0
SNTB1	6641	broad.mit.edu	37	8	121706063	121706063	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr8:121706063G>A	uc010mdg.2	-	2	883	c.657C>T	c.(655-657)TCC>TCT	p.S219S	SNTB1_uc003ype.2_Silent_p.S219S	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	219	PH 1.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding	p.S219F(1)		skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			CTAACCGAGGGGATTCAGGCG	0.552000													26	77					0	0	1	0	0
DOCK8	81704	broad.mit.edu	37	9	406940	406941	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr9:406940_406941CC>TT	uc003zgf.2	+	28	3513_3514	c.3401_3402CC>TT	c.(3400-3402)TCC>TTT	p.S1134F	DOCK8_uc010mgu.2_Missense_Mutation_p.S436F|DOCK8_uc010mgv.2_Missense_Mutation_p.S1034F|DOCK8_uc003zgk.2_Missense_Mutation_p.S592F	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1134					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		AACTCAAGCTCCTGCTCCAGCT	0.530000													45	77					0	0	1	0	0
MELK	9833	broad.mit.edu	37	9	36671008	36671008	+	Missense_Mutation	SNP	G	A	A	rs2068826		TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr9:36671008G>A	uc003zzn.2	+	16	1657	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	MELK_uc011lpm.1_Missense_Mutation_p.E376K|MELK_uc011lpn.1_Missense_Mutation_p.E466K|MELK_uc011lpo.1_Missense_Mutation_p.E313K|MELK_uc010mll.2_Missense_Mutation_p.E475K|MELK_uc011lpp.1_Missense_Mutation_p.E459K|MELK_uc010mlm.2_Missense_Mutation_p.E436K|MELK_uc011lpq.1_Missense_Mutation_p.E313K|MELK_uc011lpr.1_Missense_Mutation_p.E436K|MELK_uc011lps.1_Missense_Mutation_p.E427K	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	507						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			CCGCTCAGTGGAATTGGATCT	0.488000													34	39					0	0	1	0	0
CDC14B	8555	broad.mit.edu	37	9	99266040	99266040	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr9:99266040G>A	uc004awj.2	-	14	1944	c.1492C>T	c.(1492-1494)CGT>TGT	p.R498C	CDC14B_uc004awk.2_Missense_Mutation_p.R459C|CDC14B_uc004awl.2_RNA|CDC14B_uc004awi.2_Missense_Mutation_p.R461C	NM_033331	NP_201588	O60729	CC14B_HUMAN	CDC14 homolog B isoform 2	498					activation of anaphase-promoting complex activity|DNA repair|G2/M transition DNA damage checkpoint	nucleolus|nucleoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TTTACTTAACGCAAGACTGTT	0.383000													7	96					0	0	1	0	0
ZNF483	158399	broad.mit.edu	37	9	114304990	114304990	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr9:114304990C>T	uc004bff.2	+	6	1999	c.1775C>T	c.(1774-1776)TCA>TTA	p.S592L	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	592	C2H2-type 6.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						AGGCAGAATTCATGCCTTACC	0.398000													59	55					0	0	1	0	0
ZER1	10444	broad.mit.edu	37	9	131513739	131513739	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr9:131513739G>A	uc004bwa.1	-	6	1424	c.991C>T	c.(991-993)CTC>TTC	p.L331F		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	331					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						TTCTCAAAGAGCCCGAGGAAC	0.587000													44	39					0	0	1	0	0
RAI2	10742	broad.mit.edu	37	X	17819063	17819063	+	Silent	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:17819063G>A	uc004cyf.2	-	3	1638	c.1068C>T	c.(1066-1068)CCC>CCT	p.P356P	RAI2_uc004cyg.2_Silent_p.P356P|RAI2_uc010nfa.2_Silent_p.P356P|RAI2_uc004cyh.3_Silent_p.P356P|RAI2_uc011miy.1_Silent_p.P306P	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	356					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GTGTCTCAGGGGGAGGCTCGG	0.562000													22	40					0	0	1	0	0
CDKL5	6792	broad.mit.edu	37	X	18643338	18643338	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:18643338C>T	uc004cym.2	+	17	2720	c.2467C>T	c.(2467-2469)CCC>TCC	p.P823S	CDKL5_uc004cyn.2_Missense_Mutation_p.P823S	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	823					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					GGAGTGGCGCCCCGAGAAGAT	0.537000													32	81					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34150050	34150050	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:34150050C>T	uc004ddg.2	-	1	379	c.346G>A	c.(346-348)GCG>ACG	p.A116T		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	116										ovary(4)|central_nervous_system(1)	5						TCTACGAACGCCTTCCGTGCT	0.547000													44	59					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34150133	34150133	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:34150133G>A	uc004ddg.2	-	1	296	c.263C>T	c.(262-264)GCT>GTT	p.A88V		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	88										ovary(4)|central_nervous_system(1)	5						TTTGGGGTCAGCTTGGGGACC	0.542000													42	64					0	0	1	0	0
OTC	5009	broad.mit.edu	37	X	38260574	38260574	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:38260574C>A	uc004def.3	+	5	647	c.433C>A	c.(433-435)CAA>AAA	p.Q145K		NM_000531	NP_000522	P00480	OTC_HUMAN	ornithine carbamoyltransferase precursor	145					arginine biosynthetic process|urea cycle	mitochondrial matrix|ornithine carbamoyltransferase complex	ornithine carbamoyltransferase activity			ovary(1)|breast(1)	2					L-Citrulline(DB00155)|L-Ornithine(DB00129)	AGTGTATAAACAATCAGATTT	0.403000													6	33					0.00198382	0.00198382	1	1	0
MAGEA4	4103	broad.mit.edu	37	X	151092610	151092610	+	Silent	SNP	C	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chrX:151092610C>T	uc004fez.2	+	3	630	c.474C>T	c.(472-474)TCC>TCT	p.S158S	MAGEA4_uc004ffa.2_Silent_p.S158S|MAGEA4_uc004ffb.2_Silent_p.S158S|MAGEA4_uc004ffc.2_Silent_p.S158S|MAGEA4_uc004ffd.2_Silent_p.S158S	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	158	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCGAGTCCCTGAAGATGA	0.532000													66	85					0	0	1	0	0
MTR	4548	broad.mit.edu	37	1	237024474	237024474	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr1:237024474delA	uc001hyi.3	+	20	2516	c.2093delA	c.(2092-2094)CAAfs	p.Q698fs	MTR_uc010pxw.1_Frame_Shift_Del_p.Q291fs|MTR_uc010pxx.1_Intron|MTR_uc010pxy.1_Frame_Shift_Del_p.Q552fs	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	698	B12-binding N-terminal.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AGGTTAAACCAAAAAAAATAT	0.279													7	148	---	---	---	---					
TALDO1	6888	broad.mit.edu	37	11	747521	747521	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr11:747521delG	uc001lqz.2	+	1	90	c.40delG	c.(40-42)GCGfs	p.A14fs	TALDO1_uc010qwl.1_Frame_Shift_Del_p.A14fs|TALDO1_uc001lra.2_Frame_Shift_Del_p.A14fs	NM_006755	NP_006746	P37837	TALDO_HUMAN	transaldolase 1	14					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;4.66e-26)|Epithelial(43;2.97e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.48e-19)|BRCA - Breast invasive adenocarcinoma(625;4.41e-05)|Lung(200;0.0595)|LUSC - Lung squamous cell carcinoma(625;0.0712)		GATGGAGTCCGCGCTGGACCA	0.567													6	10	---	---	---	---					
PABPC3	5042	broad.mit.edu	37	13	25671804	25671806	+	In_Frame_Del	DEL	GCT	-	-			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr13:25671804_25671806delGCT	uc001upy.2	+	1	1529_1531	c.1468_1470delGCT	c.(1468-1470)GCTdel	p.A496del		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	496					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		ACGTCctgcagctgctgctgctg	0.414													11	79	---	---	---	---					
SPATA5L1	79029	broad.mit.edu	37	15	45710840	45710841	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr15:45710840_45710841insT	uc001zve.2	+	7	2163_2164	c.2054_2055insT	c.(2053-2055)TGTfs	p.C685fs	SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	685						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		GCAGAAACCTGTTTTTTTTCTG	0.356													7	120	---	---	---	---					
DNAH1	25981	broad.mit.edu	37	3	52423601	52423602	+	Frame_Shift_Ins	INS	-	G	G	rs138518792	by1000genomes	TCGA-D9-A3Z3-06A-11D-A23B-08	TCGA-D9-A3Z3-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ed76151-1367-4e41-870d-06816e6a107d	32a2eed0-1c50-4482-8479-c8278ba893ca	g.chr3:52423601_52423602insG	uc011bef.1	+	60	9881_9882	c.9620_9621insG	c.(9619-9621)CAGfs	p.Q3207fs	DNAH1_uc003ddv.2_Frame_Shift_Ins_p.Q65fs	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3272	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGATCGTGGCAGGTGCCCACCC	0.658													2	4	---	---	---	---					
