Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CAMTA1	23261	broad.mit.edu	37	1	7151399	7151399	+	Silent	SNP	C	T	T	rs146654528	byFrequency	TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:7151399C>T	uc001aoi.2	+	4	477	c.270C>T	c.(268-270)CAC>CAT	p.H90H		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	90	CG-1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		TTGAGAAACACGAAGAATGGC	0.358													18	33					0	0	1	0	0
CLCNKA	1187	broad.mit.edu	37	1	16360146	16360146	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:16360146C>T	uc001axu.2	+	20	2137	c.2057C>T	c.(2056-2058)CCA>CTA	p.P686L	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.P685L|CLCNKA_uc010obw.1_Missense_Mutation_p.P643L|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	686					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CCGCCAGCTCCAAAGTGAGCC	0.582													13	21					0	0	1	0	0
MST1P2	11209	broad.mit.edu	37	1	16974224	16974224	+	RNA	SNP	C	G	G	rs148702086	by1000genomes	TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:16974224C>G	uc009vow.2	+	5		c.1034C>G			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TTGGTCCCAGCCCCAGAGGGA	0.652													4	24					0	0	1	0	0
TINAGL1	64129	broad.mit.edu	37	1	32042809	32042809	+	Silent	SNP	G	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:32042809G>T	uc001bta.2	+	2	186	c.60G>T	c.(58-60)CTG>CTT	p.L20L	TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Silent_p.L20L|TINAGL1_uc010ogj.1_Silent_p.L20L|TINAGL1_uc010ogk.1_Silent_p.L20L	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1	20					endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		ACTTGGCTCTGGGTGCCCAGC	0.706													10	5					0.00829132	0.00829132	1	1	0
PTCH2	8643	broad.mit.edu	37	1	45292330	45292330	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:45292330C>T	uc010olf.1	-	18	2818	c.2806G>A	c.(2806-2808)GAG>AAG	p.E936K	PTCH2_uc010olg.1_Missense_Mutation_p.E634K	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	936	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					TGGCCGGCCTCTGCGCATGCT	0.672									Basal_Cell_Nevus_syndrome				12	3					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75039086	75039086	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:75039086C>T	uc001dgg.2	-	14	2527	c.2308G>A	c.(2308-2310)GAG>AAG	p.E770K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	770	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTTTCTTCTCCAGTGTATAC	0.458													72	24					0	0	1	0	0
GBP2	2634	broad.mit.edu	37	1	89579780	89579781	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:89579780_89579781CC>TT	uc001dmz.1	-	7	1338_1339	c.1067_1068GG>AA	c.(1066-1068)AGG>AAA	p.R356K	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	356					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		TCTCACTGTCCCTGTGCAGGTC	0.515													129	25					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			181	49					0	0	1	0	0
HIST2H2BF	440689	broad.mit.edu	37	1	149398948	149398948	+	RNA	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:149398948C>T	uc010pbi.1	-	1		c.282G>A						Q5QNW6	H2B2F_HUMAN	Homo sapiens histone cluster 2, H3, pseudogene 2, mRNA (cDNA clone IMAGE:5190019).						nucleosome assembly	nucleosome|nucleus	DNA binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)					AGGCGGGACGCCTCTCCCGCG	0.657													38	64					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152082677	152082677	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:152082677C>T	uc001ezp.2	-	2	3016	c.3016G>A	c.(3016-3018)GAG>AAG	p.E1006K	TCHH_uc009wne.1_Missense_Mutation_p.E1006K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1006	10 X 30 AA tandem repeats.|4-4.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			tcccgttcctctctcagcagc	0.159													146	233					0	0	1	0	0
GATAD2B	57459	broad.mit.edu	37	1	153788863	153788863	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:153788863G>A	uc001fdb.3	-	7	1346	c.1102C>T	c.(1102-1104)CCA>TCA	p.P368S		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	368	CR2.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TTAGGGGGTGGGATCTCCAGG	0.527													49	74					0	0	1	0	0
DCST1	149095	broad.mit.edu	37	1	155020646	155020646	+	Silent	SNP	G	A	A	rs143335670		TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:155020646G>A	uc001fgn.1	+	16	1965	c.1869G>A	c.(1867-1869)CCG>CCA	p.P623P	DCST1_uc010pes.1_Silent_p.P598P|uc001fgo.2_Intron|ADAM15_uc001fgq.1_5'Flank	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	623	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			AGAAGGCTCCGGTAAGTCCAG	0.582													16	17					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157516924	157516924	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:157516924C>T	uc001fqu.2	-	3	274	c.116G>A	c.(115-117)AGA>AAA	p.R39K	FCRL5_uc009wsm.2_Missense_Mutation_p.R39K|FCRL5_uc010phv.1_Missense_Mutation_p.R39K|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Missense_Mutation_p.R39K|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	39	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GAGGGTCACTCTCTCTCCTTG	0.493													78	115					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158817535	158817535	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:158817535G>A	uc001fsz.1	+	6	1205	c.1005G>A	c.(1003-1005)AAG>AAA	p.K335K		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	335	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TACACAAGAAGAACACAATTT	0.363													69	121					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160145985	160145985	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:160145985C>T	uc001fve.3	+	16	2894	c.2415C>T	c.(2413-2415)CCC>CCT	p.P805P	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Silent_p.P308P|ATP1A4_uc001fvh.2_5'Flank	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	805	Extracellular (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCGGTATACCCCTGCCTCTGG	0.512													128	148					0	0	1	0	0
HSD17B7	51478	broad.mit.edu	37	1	162773287	162773287	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:162773287C>T	uc001gci.2	+	6	804	c.709C>T	c.(709-711)CCG>TCG	p.P237S	HSD17B7_uc009wuv.2_RNA	NM_016371	NP_057455	P56937	DHB7_HUMAN	hydroxysteroid (17-beta) dehydrogenase 7	237	Helical; (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	3-keto sterol reductase activity|estradiol 17-beta-dehydrogenase activity			ovary(1)	1	all_hematologic(112;0.115)				NADH(DB00157)	AATTCTGCCTCCGTTTATATG	0.398													64	77					0	0	1	0	0
C1orf26	54823	broad.mit.edu	37	1	185153946	185153946	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:185153946C>T	uc001grg.3	+	9	1426	c.1312C>T	c.(1312-1314)CTA>TTA	p.L438L	C1orf26_uc001grh.3_Silent_p.L438L	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	438	PINc.										0						GGAAGGAAAACTACTAAAACG	0.358													66	102					0	0	1	0	0
LHX9	56956	broad.mit.edu	37	1	197890739	197890739	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:197890739G>A	uc001guk.1	+	3	1120	c.683G>A	c.(682-684)CGG>CAG	p.R228Q	LHX9_uc001gui.1_Missense_Mutation_p.R219Q|LHX9_uc001guj.1_Missense_Mutation_p.R234Q	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	228					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GGGCGGCCCCGGAAGCGGAAG	0.657													12	26					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212798993	212798993	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:212798993C>T	uc001hjk.2	+	1	1178	c.774C>T	c.(772-774)TCC>TCT	p.S258S	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	258										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TCAATGCATCCATCCCCAAAA	0.398													84	74					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214817949	214817949	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:214817949C>T	uc001hkm.2	+	13	5210	c.5036C>T	c.(5035-5037)TCA>TTA	p.S1679L		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1775					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAACATACTTCAGAAACTACA	0.338													21	62					0	0	1	0	0
PYCR2	29920	broad.mit.edu	37	1	226109560	226109560	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr1:226109560A>T	uc001hpq.2	-	4	693	c.538T>A	c.(538-540)TAT>AAT	p.Y180N	LEFTY1_uc010pvj.1_Intron|PYCR2_uc001hpp.2_Missense_Mutation_p.Y144N|PYCR2_uc001hpr.2_Missense_Mutation_p.Y133N|PYCR2_uc001hps.1_Missense_Mutation_p.Y133N	NM_013328	NP_037460	Q96C36	P5CR2_HUMAN	pyrroline-5-carboxylate reductase family, member	180					proline biosynthetic process	cytoplasm	binding|pyrroline-5-carboxylate reductase activity				0	Breast(184;0.197)				L-Proline(DB00172)|NADH(DB00157)	GGCCTCACATAGGCAGGCCCG	0.647													12	17					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6498675	6498675	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:6498675C>T	uc001ijj.1	-	15	1683	c.1608G>A	c.(1606-1608)ACG>ACA	p.T536T	PRKCQ_uc009xim.1_Silent_p.T536T|PRKCQ_uc001iji.1_Silent_p.T569T|PRKCQ_uc009xin.1_Silent_p.T500T|PRKCQ_uc010qax.1_Silent_p.T411T	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	536	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						AGAAGGTATTCGTCTTGGCAT	0.507													19	37					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7608153	7608153	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:7608153G>A	uc001ijq.2	-	13	2446	c.2367C>T	c.(2365-2367)TCC>TCT	p.S789S	ITIH5_uc001ijp.2_Silent_p.S575S	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	789					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TGGCAGACACGGACACCTCCA	0.602													3	15					0	0	1	0	0
BAMBI	25805	broad.mit.edu	37	10	28971193	28971193	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:28971193A>C	uc001iuj.1	+	3	1049	c.646A>C	c.(646-648)ATG>CTG	p.M216L	BAMBI_uc001iui.2_3'UTR	NM_012342	NP_036474	Q13145	BAMBI_HUMAN	BMP and activin membrane-bound inhibitor	216	Cytoplasmic (Potential).				cell migration|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|positive regulation of protein binding|positive regulation of transcription, DNA-dependent|regulation of cell shape	cytoplasm|integral to membrane|plasma membrane	frizzled binding|type II transforming growth factor beta receptor binding			central_nervous_system(4)	4						CTTGGAATGCATGGTGCCGGT	0.522													28	54					0	0	1	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089606	43089606	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:43089606G>A	uc001jaf.1	-	5	907	c.792C>T	c.(790-792)TTC>TTT	p.F264F	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Silent_p.F152F|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	264						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTATCTGATGGAACAAGAGGG	0.398													32	57					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687068	68687068	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:68687068G>C	uc001jmz.1	+	2	944	c.394G>C	c.(394-396)GTG>CTG	p.V132L	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.V132L	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	132	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CTTCAGACCTGTGACAAATTT	0.398													44	106					0	0	1	0	0
SLC16A12	387700	broad.mit.edu	37	10	91198622	91198622	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:91198622G>A	uc001kgm.2	-	6	1068	c.677C>T	c.(676-678)TCA>TTA	p.S226L	SLC16A12_uc001kgl.2_5'Flank	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	226	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						GGTCAAAGATGAATAGGGAGA	0.443													11	39					0	0	1	0	0
COL17A1	1308	broad.mit.edu	37	10	105811271	105811271	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:105811271G>A	uc001kxr.2	-	25	2175	c.2006C>T	c.(2005-2007)TCC>TTC	p.S669F		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	669	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGAGCCGCTGGAACCTGAGAA	0.567													6	16					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115971716	115971716	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:115971716C>T	uc001lbg.1	+	14	1905	c.1752C>T	c.(1750-1752)ATC>ATT	p.I584I	TDRD1_uc001lbf.2_Intron|TDRD1_uc001lbh.1_Silent_p.I575I|TDRD1_uc001lbi.1_Silent_p.I575I|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Silent_p.I293I	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	584	Tudor 2.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		ACTTTGAAATCCTTAGTTTGA	0.393													24	77					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135012112	135012112	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr10:135012112C>T	uc001llz.1	+	14	2101	c.2100C>T	c.(2098-2100)TCC>TCT	p.S700S	KNDC1_uc001lma.1_Silent_p.S635S|KNDC1_uc001lmb.1_Silent_p.S112S	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	700					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		AGGAGGAGTCCGAGGAGAGGG	0.721													5	3					0	0	1	0	0
PAX6	5080	broad.mit.edu	37	11	31812346	31812346	+	Silent	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:31812346A>G	uc001mtd.3	-	11	1985	c.1095T>C	c.(1093-1095)AAT>AAC	p.N365N	PAX6_uc001mte.3_Silent_p.N365N|PAX6_uc001mtg.3_Silent_p.N379N|PAX6_uc001mtf.3_Silent_p.N365N|PAX6_uc001mth.3_Silent_p.N365N|PAX6_uc009yjr.2_Silent_p.N365N	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	365	Pro/Ser/Thr-rich.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					AACTCCGCCCATTCACCGAAG	0.582									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				17	6					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36597001	36597001	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:36597001G>A	uc001mwu.3	+	2	2271	c.2147G>A	c.(2146-2148)CGG>CAG	p.R716Q	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	716					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AAACTTGTGCGGGAAGTGGAA	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				34	18					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68560821	68560821	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:68560821C>T	uc001oog.3	-	9	1099	c.929G>A	c.(928-930)CGG>CAG	p.R310Q	CPT1A_uc001oof.3_Missense_Mutation_p.R310Q|CPT1A_uc009ysj.2_Missense_Mutation_p.R310Q	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	310	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	ATTAAACATCCGCTCCCACTG	0.473													4	10					0	0	1	0	0
P4HA3	283208	broad.mit.edu	37	11	74013568	74013568	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:74013568C>T	uc001ouz.2	-	3	456	c.413G>A	c.(412-414)AGG>AAG	p.R138K	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.R138K	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	138						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					CATCAGGGCCCTTGCTGCTCC	0.532													28	24					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93822132	93822132	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:93822132A>C	uc001pep.2	+	12	2449	c.2292A>C	c.(2290-2292)GAA>GAC	p.E764D	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	764	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CAAGAGGGGAAAGGTACCACA	0.527													14	10					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120852895	120852895	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr11:120852895G>A	uc001pxn.2	+	20	2763	c.2476G>A	c.(2476-2478)GAG>AAG	p.E826K	GRIK4_uc009zaw.1_Missense_Mutation_p.E826K|GRIK4_uc009zax.1_Missense_Mutation_p.E826K	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	826	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GGCTATGTTGGAGTTTTTATG	0.423													78	44					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7459141	7459141	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:7459141C>T	uc001qsx.1	+	2	214	c.214C>T	c.(214-216)CCA>TCA	p.P72S		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	72					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						AGGGGAGAGACCAGCTAACCC	0.527													4	9					0	0	1	0	0
ARHGDIB	397	broad.mit.edu	37	12	15102800	15102800	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:15102800G>A	uc001rcq.1	-	3	305	c.201C>T	c.(199-201)GTC>GTT	p.V67V	ARHGDIB_uc001rcp.1_5'Flank	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	67					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						GGGTGACAACGACATTGGGGG	0.512													25	63					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826584	43826584	+	Silent	SNP	T	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:43826584T>G	uc010skx.1	-	20	2751	c.2751A>C	c.(2749-2751)TCA>TCC	p.S917S	ADAMTS20_uc001rno.1_Silent_p.S71S|ADAMTS20_uc001rnp.1_Silent_p.S71S	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	917	TSP type-1 3.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CACATTGGGATGAACATTCAC	0.368													44	86					0	0	1	0	0
KRT5	3852	broad.mit.edu	37	12	52911460	52911460	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:52911460C>T	uc001san.2	-	5	1169	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	KRT5_uc009zmh.2_Missense_Mutation_p.D336N	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	336	Linker 12.|Rod.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATGATGCTATCCAGGTCCAGG	0.572													42	112					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54893186	54893186	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:54893186C>T	uc001sgc.3	+	2	229	c.150C>T	c.(148-150)TCC>TCT	p.S50S	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_5'UTR	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	50					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TGGAAAAGTCCATGGAACCAT	0.413													36	65					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101703598	101703598	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:101703598C>T	uc001tia.1	+	19	2368	c.2212C>T	c.(2212-2214)CCT>TCT	p.P738S		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	738					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						ACTCTGGGATCCTGTTATTGA	0.373													51	101					0	0	1	0	0
RFX4	5992	broad.mit.edu	37	12	107113766	107113766	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:107113766G>A	uc001tlr.2	+	12	1233	c.1167G>A	c.(1165-1167)GAG>GAA	p.E389E	RFX4_uc001tls.2_Silent_p.E398E|RFX4_uc001tlt.2_Silent_p.E398E|RFX4_uc001tlv.2_Silent_p.E295E	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	389	Necessary for dimerization.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						ATCTCTTGGAGGAGCAGTCTC	0.493													26	46					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109519148	109519148	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:109519148C>T	uc010sxi.1	+	8	834	c.730C>T	c.(730-732)CGA>TGA	p.R244*	USP30_uc001tnu.3_Nonsense_Mutation_p.R213*|USP30_uc001tnw.3_5'Flank	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	244	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						GAGTCCTGTTCGATTTGATAC	0.343													44	91					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558863	129558863	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr12:129558863C>T	uc009zyl.1	-	9	3185	c.2857G>A	c.(2857-2859)GAG>AAG	p.E953K	TMEM132D_uc001uia.2_Missense_Mutation_p.E491K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	953	Cytoplasmic (Potential).					integral to membrane		p.E953*(1)		ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCCTGCTCCTCGAAGGGAACC	0.458													40	84					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19432987	19432987	+	RNA	SNP	G	A	A	rs35421699		TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr13:19432987G>A	uc010tcj.1	-	1		c.13123C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TGCAGGCAATGAATCCACACA	0.348													22	98					0	0	1	0	0
ZC3H13	23091	broad.mit.edu	37	13	46619172	46619172	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr13:46619172C>T	uc010tfw.1	-	2	151	c.145G>A	c.(145-147)GGC>AGC	p.G49S	ZC3H13_uc001vas.1_Missense_Mutation_p.G49S|ZC3H13_uc001vat.1_Missense_Mutation_p.G49S	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	49	C3H1-type.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		AGGCAGTTGCCAGTCTTCAGC	0.378													63	45					0	0	1	0	0
DAOA	267012	broad.mit.edu	37	13	106142351	106142351	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr13:106142351G>A	uc001vqb.2	+	4	657	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	DAOA_uc010tjf.1_Missense_Mutation_p.R57Q|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_Missense_Mutation_p.R100Q|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	128						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					cctctagaacgaatgtggacc	0													11	23					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885517	24885517	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr14:24885517G>A	uc001wpf.3	+	9	4880	c.4562G>A	c.(4561-4563)GGC>GAC	p.G1521D		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1521					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						AAGGAGAGTGGCCTGCTTATG	0.552													8	4					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106511848	106511848	+	RNA	SNP	G	C	C	rs72703009	byFrequency	TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr14:106511848G>C	uc010tyt.1	-	1673		c.33540C>G								Parts of antibodies, mostly variable regions.												0						GTGAGTTTTTGGTATTGTCTC	0.488													5	51					0	0	1	0	0
TELO2	9894	broad.mit.edu	37	16	1551737	1551737	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:1551737C>T	uc002cly.2	+	11	1726	c.1435C>T	c.(1435-1437)CAA>TAA	p.Q479*		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	479						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				CGGCGTCCCCCAAGCACAGCT	0.652													19	28					0	0	1	0	0
RNF151	146310	broad.mit.edu	37	16	2018561	2018561	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:2018561G>A	uc002cnt.1	+	4	381	c.373G>A	c.(373-375)GGG>AGG	p.G125R		NM_174903	NP_777563	Q2KHN1	RN151_HUMAN	ring finger protein 151	125	TRAF-type.				cell differentiation|spermatogenesis	cytoplasm|nucleus	ubiquitin-protein ligase activity|zinc ion binding				0						GGTGCCGCGTGGGACCCTGGC	0.711													3	12					0	0	1	0	0
ZG16B	124220	broad.mit.edu	37	16	2882082	2882082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:2882082G>A	uc002cru.2	+	4	625	c.549G>A	c.(547-549)TGG>TGA	p.W183*		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	183						extracellular region	sugar binding			ovary(1)	1						GCTTTGAATGGAATTATCCAC	0.557													45	61					0	0	1	0	0
ROGDI	79641	broad.mit.edu	37	16	4851318	4851318	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:4851318C>T	uc002cxv.2	-	4	307	c.205G>A	c.(205-207)GAC>AAC	p.D69N	ROGDI_uc002cxu.2_5'UTR|ROGDI_uc010bua.2_RNA|ROGDI_uc002cxw.2_Intron	NM_024589	NP_078865	Q9GZN7	ROGDI_HUMAN	leucine zipper domain protein	69						intracellular		p.D69D(1)		ovary(1)|skin(1)	2						TTCACCTGGTCTGTGCTGTAA	0.652													10	14					0	0	1	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11870760	11870760	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:11870760G>A	uc002dbk.2	-	4	510	c.312C>T	c.(310-312)TTC>TTT	p.F104F	ZC3H7A_uc002dbl.2_Silent_p.F104F|ZC3H7A_uc002dbm.1_Silent_p.F104F	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	104	TPR 2.					nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CTTTATCATGGAAACCCTGGT	0.373													11	25					0	0	1	0	0
MKL2	57496	broad.mit.edu	37	16	14234489	14234489	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:14234489C>T	uc010uza.1	+	3	181	c.26C>T	c.(25-27)ACC>ATC	p.T9I	MKL2_uc002dcg.2_Missense_Mutation_p.T9I	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	Error:Variant_position_missing_in_Q9ULH7_after_alignment					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						GCGATAGACACCGAGGATGAA	0.502													17	50					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15826559	15826559	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:15826559C>T	uc002ddy.2	-	27	3620	c.3513G>A	c.(3511-3513)AAG>AAA	p.K1171K	MYH11_uc002ddv.2_Silent_p.K1178K|MYH11_uc002ddw.2_Silent_p.K1171K|MYH11_uc002ddx.2_Silent_p.K1178K|MYH11_uc010bvg.2_Silent_p.K1003K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1171	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CCTGCTCCCTCTTGGCCCTTG	0.478			T	CBFB	AML								26	43					0	0	1	0	0
APOB48R	55911	broad.mit.edu	37	16	28509498	28509498	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:28509498C>T	uc002dqb.1	+	4	3035	c.3025C>T	c.(3025-3027)CGT>TGT	p.R1009C	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.R547C	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	1009					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCCTCTTTTCGTCGGACTCC	0.682													7	8					0	0	1	0	0
ASPHD1	253982	broad.mit.edu	37	16	29912928	29912928	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:29912928C>T	uc002dut.2	+	1	782	c.636C>T	c.(634-636)CTC>CTT	p.L212L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	212	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						ACGTGGAGCTCCTGGAGAGCA	0.662													26	44					0	0	1	0	0
KCTD19	146212	broad.mit.edu	37	16	67327453	67327453	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:67327453C>T	uc002esu.2	-	12	2263	c.2212G>A	c.(2212-2214)GAG>AAG	p.E738K	KCTD19_uc002est.2_Missense_Mutation_p.E510K|KCTD19_uc010vjj.1_Missense_Mutation_p.E481K	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	738						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		TCACCTCTCTCCTTGGTCCTC	0.383													27	27					0	0	1	0	0
CMIP	80790	broad.mit.edu	37	16	81479080	81479080	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:81479080G>A	uc002fgp.2	+	1	306	c.234G>A	c.(232-234)TCG>TCA	p.S78S		NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	44	PH.					cytoplasm|nucleus					0						TCCTCACCTCGAAATTCCTGA	0.632													2	2					0	0	1	0	0
CMIP	80790	broad.mit.edu	37	16	81730263	81730263	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:81730263C>T	uc002fgp.2	+	14	1701	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	CMIP_uc002fgq.1_Silent_p.F449F|CMIP_uc010vnq.1_Silent_p.F356F|CMIP_uc002fgr.1_Silent_p.F390F|CMIP_uc010vnr.1_Silent_p.F109F	NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	509						cytoplasm|nucleus					0						GGGAGCTGTTCGCCAGCATGG	0.657													8	6					0	0	1	0	0
CLEC10A	10462	broad.mit.edu	37	17	6978703	6978704	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:6978703_6978704CC>TT	uc002gek.2	-	8	1060_1061	c.757_758GG>AA	c.(757-759)GGA>AAA	p.G253K	CLEC10A_uc002gej.2_Missense_Mutation_p.G229K|CLEC10A_uc002gel.2_Missense_Mutation_p.G226K|CLEC10A_uc010clv.1_3'UTR	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	253	C-type lectin.|Extracellular (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						ATAGTCTGTTCCATCCACCCAC	0.569													20	45					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11687704	11687704	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:11687704C>T	uc002gne.2	+	41	7977	c.7909C>T	c.(7909-7911)CTC>TTC	p.L2637F	DNAH9_uc010coo.2_Missense_Mutation_p.L1931F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2637	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCATCTGAAGCTCGGAAACTT	0.562													70	130					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12661435	12661435	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:12661435C>A	uc002gnn.2	+	11	2391	c.2092C>A	c.(2092-2094)CCA>ACA	p.P698T	MYOCD_uc002gno.2_Missense_Mutation_p.P746T|MYOCD_uc002gnp.1_Missense_Mutation_p.P650T|MYOCD_uc002gnq.2_Intron	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	698					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TAAGGTGGGGCCAAAGTTTTC	0.398													32	61					2.08457e-15	2.10326e-15	1	1	0
SLC47A1	55244	broad.mit.edu	37	17	19445774	19445774	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:19445774G>A	uc002gvy.1	+	2	290	c.204G>A	c.(202-204)AAG>AAA	p.K68K	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Silent_p.K68K|SLC47A1_uc010vyz.1_Silent_p.K68K|SLC47A1_uc010cqp.1_Silent_p.K68K	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	68	Extracellular (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					ACCTGGGCAAGCTGGAGCTGG	0.483													25	49					0	0	1	0	0
THRA	7067	broad.mit.edu	37	17	38243024	38243024	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:38243024C>T	uc002htw.2	+	7	1124	c.641C>T	c.(640-642)GCC>GTC	p.A214V	THRA_uc010cwp.1_Missense_Mutation_p.A214V|THRA_uc002htv.2_Missense_Mutation_p.A214V|THRA_uc002htx.2_Missense_Mutation_p.A214V	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	214	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	GACCTGGAAGCCTTCAGCGAG	0.582											OREG0024390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	32					0	0	1	0	0
KRT12	3859	broad.mit.edu	37	17	39023373	39023373	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:39023373G>A	uc002hvk.2	-	1	90	c.66C>T	c.(64-66)TCC>TCT	p.S22S		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	22	Head.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CACTCTGCGAGGAGAGCCGCC	0.602													14	33					0	0	1	0	0
NBR1	4077	broad.mit.edu	37	17	41345575	41345575	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:41345575C>T	uc010czd.2	+	12	1584	c.1444C>T	c.(1444-1446)CCC>TCC	p.P482S	NBR1_uc010diz.2_Missense_Mutation_p.P482S|NBR1_uc010whu.1_Missense_Mutation_p.P482S|NBR1_uc010whv.1_Missense_Mutation_p.P482S|NBR1_uc010whw.1_Missense_Mutation_p.P461S|NBR1_uc010whx.1_Missense_Mutation_p.P291S	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	482					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		AGATCCTTTCCCCTCCGAAGA	0.512													5	10					0	0	1	0	0
MAPT	4137	broad.mit.edu	37	17	44073845	44073845	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:44073845C>T	uc002ijr.3	+	10	1908	c.1588C>T	c.(1588-1590)CCG>TCG	p.P530S	MAPT_uc010dau.2_Missense_Mutation_p.P548S|MAPT_uc002ijs.3_Missense_Mutation_p.P213S|MAPT_uc002ijx.3_Missense_Mutation_p.P184S|MAPT_uc002ijt.3_Missense_Mutation_p.P155S|MAPT_uc002iju.3_Missense_Mutation_p.P155S|MAPT_uc002ijv.3_Missense_Mutation_p.P162S|STH_uc002ijy.2_5'Flank	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	530					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				CTCCCGCACCCCGTCCCTTCC	0.677													14	19					0	0	1	0	0
HGS	9146	broad.mit.edu	37	17	79663917	79663917	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr17:79663917A>T	uc002kbg.2	+	18	1848	c.1771A>T	c.(1771-1773)AGC>TGC	p.S591C		NM_004712	NP_004703	O14964	HGS_HUMAN	hepatocyte growth factor-regulated tyrosine	591	Interaction with NF2.|Gln-rich.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of JAK-STAT cascade|regulation of protein catabolic process	cytosol|early endosome membrane|multivesicular body membrane	metal ion binding|protein domain specific binding			ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)			CAGCTTCCCCAGCACCTTCAG	0.687													23	50					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325494	31325494	+	Silent	SNP	C	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr18:31325494C>G	uc010dmg.1	+	12	5737	c.5682C>G	c.(5680-5682)GTC>GTG	p.V1894V	ASXL3_uc002kxq.2_Silent_p.V1601V	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1894					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCCCTGAGGTCAAACAGCAAA	0.507													72	90					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52609974	52609974	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr18:52609974C>T	uc002lfs.2	-	3	221	c.49G>A	c.(49-51)GAA>AAA	p.E17K	CCDC68_uc002lft.2_Missense_Mutation_p.E17K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	17										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		GAATTATCTTCCATCTTATCC	0.388													33	52					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61449612	61449612	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr18:61449612C>T	uc002ljl.2	+	2	102	c.6C>T	c.(4-6)GCC>GCT	p.A2A	SERPINB7_uc002ljm.2_Silent_p.A2A|SERPINB7_uc010xet.1_Silent_p.A2A|SERPINB7_uc010dqg.2_Silent_p.A2A	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	2					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TTGCAATGGCCTCCCTTGCTG	0.373													14	49					0	0	1	0	0
PRSSL1	400668	broad.mit.edu	37	19	692001	692001	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:692001C>T	uc002lpl.1	-	3	269	c.238G>A	c.(238-240)GAC>AAC	p.D80N	PRSSL1_uc010xfs.1_Missense_Mutation_p.D79N	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	80	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGCGGAGGTCTCTGCAGGGA	0.617													2	7					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4523719	4523719	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:4523719G>A	uc002mas.2	-	8	1266	c.1213C>T	c.(1213-1215)CCC>TCC	p.P405S		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	405						lipid particle					0						GCCCAGCGGGGGTCAGGGCCC	0.716													55	60					0	0	1	0	0
TNFSF14	8740	broad.mit.edu	37	19	6664984	6664984	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:6664984G>A	uc002mfk.1	-	5	1058	c.676C>T	c.(676-678)CGA>TGA	p.R226*	TNFSF14_uc002mfj.1_Nonsense_Mutation_p.R190*	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	226	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						TCACGCAGTCGAACCAGGCGT	0.602													36	61					0	0	1	0	0
MEF2B	100271849	broad.mit.edu	37	19	19261526	19261526	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:19261526G>A	uc002nlm.2	-	2	133	c.19C>T	c.(19-21)CAG>TAG	p.Q7*	MEF2B_uc002nln.2_Nonsense_Mutation_p.Q54*|MEF2B_uc002nll.2_Nonsense_Mutation_p.Q7*|LOC729991-MEF2B_uc010xqo.1_Nonsense_Mutation_p.Q7*|LOC729991-MEF2B_uc010xqp.1_Nonsense_Mutation_p.Q7*|LOC729991-MEF2B_uc002nlo.2_Nonsense_Mutation_p.Q7*|LOC729991-MEF2B_uc002nlp.2_Nonsense_Mutation_p.Q7*|MEF2B_uc002nlk.2_Nonsense_Mutation_p.Q7*	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			CGGGAGATCTGGATTTTTTTC	0.562													28	38					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19749226	19749226	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:19749226C>T	uc002nnd.2	-	8	720	c.603G>A	c.(601-603)AAG>AAA	p.K201K	GMIP_uc010xrb.1_Silent_p.K201K|GMIP_uc010xrc.1_Silent_p.K201K	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	201					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GCTTCTGCTCCTTCATCCACT	0.602													10	28					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38987102	38987102	+	Silent	SNP	C	T	T	rs143102497		TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:38987102C>T	uc002oit.2	+	41	6847	c.6717C>T	c.(6715-6717)TTC>TTT	p.F2239F	RYR1_uc002oiu.2_Silent_p.F2239F|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2239	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCTGCTATTTCTGCCGAATCA	0.632													32	33					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40367841	40367841	+	Silent	SNP	T	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:40367841T>G	uc002omp.3	-	29	13127	c.13119A>C	c.(13117-13119)GCA>GCC	p.A4373A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4373	TIL 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGTAAGGGGTGCAGGGGACG	0.627													8	22					0	0	1	0	0
CEACAM3	1084	broad.mit.edu	37	19	42301871	42301871	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:42301871C>T	uc002orn.1	+	2	491	c.415C>T	c.(415-417)CAT>TAT	p.H139Y	CEACAM3_uc010eia.1_Missense_Mutation_p.H139Y|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	139	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						TGGACAGTTCCATGTATACCG	0.488													120	199					0	0	1	0	0
PVR	5817	broad.mit.edu	37	19	45150785	45150785	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:45150785C>T	uc002ozm.2	+	2	669	c.370C>T	c.(370-372)CTG>TTG	p.L124L	PVR_uc010ejs.2_Silent_p.L124L|PVR_uc010xxb.1_Silent_p.L124L|PVR_uc010xxc.1_Silent_p.L124L|PVR_uc002ozn.2_Silent_p.L69L	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	124	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		CTACACCTGCCTGTTCGTCAC	0.607													6	6					0	0	1	0	0
SULT2A1	6822	broad.mit.edu	37	19	48377963	48377963	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:48377963G>A	uc002phr.2	-	5	836	c.696C>T	c.(694-696)TCC>TCT	p.S232S		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	232					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		CACTCAGGAGGGAATAATTGG	0.393													36	71					0	0	1	0	0
BCAT2	587	broad.mit.edu	37	19	49303477	49303478	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:49303477_49303478CC>TT	uc002pkr.2	-	4	414_415	c.377_378GG>AA	c.(376-378)CGG>CAA	p.R126Q	BCAT2_uc002pkp.2_Missense_Mutation_p.R86Q|BCAT2_uc002pkq.3_Missense_Mutation_p.R86Q|BCAT2_uc002pks.2_Missense_Mutation_p.R86Q|BCAT2_uc002pkt.2_Missense_Mutation_p.R34Q|BCAT2_uc010emh.1_Missense_Mutation_p.R126Q|BCAT2_uc010emi.1_Missense_Mutation_p.R34Q|BCAT2_uc002pku.1_Missense_Mutation_p.R86Q|BCAT2_uc010emj.1_RNA	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	126						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	AGCGCAGCATCCGGTCCATGTT	0.693													15	27					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130921	52130921	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:52130921G>A	uc002pxe.2	-	6	1215	c.1076C>T	c.(1075-1077)CCG>CTG	p.P359L		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	359	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GGAGGGGGCCGGCCGGGCTCG	0.677													4	9					0	0	1	0	0
ZNF600	162966	broad.mit.edu	37	19	53269883	53269883	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:53269883G>A	uc002qab.3	-	3	1412	c.1126C>T	c.(1126-1128)CAT>TAT	p.H376Y		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	376	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		AGTCTATGATGGCATACAAGG	0.408													84	145					0	0	1	0	0
ZNF347	84671	broad.mit.edu	37	19	53645802	53645802	+	Silent	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:53645802A>G	uc002qbb.1	-	5	348	c.279T>C	c.(277-279)TCT>TCC	p.S93S	ZNF347_uc010eql.1_Silent_p.S94S|ZNF347_uc002qbc.1_Silent_p.S94S	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	93					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CAAATTCGGAAGAGAGAGCTA	0.333													8	16					0	0	1	0	0
VSTM1	284415	broad.mit.edu	37	19	54545045	54545045	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:54545045C>T	uc002qcw.3	-	8	755	c.579G>A	c.(577-579)AGG>AGA	p.R193R	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Silent_p.R162R	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	193						integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		AGAGAGATACCCTTTCCATAT	0.473													12	25					0	0	1	0	0
MBOAT7	79143	broad.mit.edu	37	19	54684685	54684685	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:54684685T>C	uc002qdq.2	-	7	925	c.659A>G	c.(658-660)GAC>GGC	p.D220G	MBOAT7_uc010erg.2_Intron|MBOAT7_uc010yem.1_Missense_Mutation_p.D202G|MBOAT7_uc002qdr.2_Missense_Mutation_p.D220G|MBOAT7_uc002qds.2_Missense_Mutation_p.D147G|MBOAT7_uc010yen.1_Missense_Mutation_p.D147G|MBOAT7_uc002qdt.3_Missense_Mutation_p.D220G	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	220					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GTAGAAGGCGTCCTCGCGCAC	0.706											OREG0003644	type=REGULATORY REGION|Gene=AK123290|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	4	1					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56544122	56544122	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:56544122C>T	uc002qmj.2	+	8	2422	c.2422C>T	c.(2422-2424)CCC>TCC	p.P808S	NLRP5_uc002qmi.2_Missense_Mutation_p.P789S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	808						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GCTGAGGCATCCCACCTGCAA	0.617													19	58					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327581	57327581	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:57327581A>C	uc002qnu.2	-	7	2580	c.2229T>G	c.(2227-2229)AGT>AGG	p.S743R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S714R|PEG3_uc002qnv.2_Missense_Mutation_p.S743R|PEG3_uc002qnw.2_Missense_Mutation_p.S619R|PEG3_uc002qnx.2_Missense_Mutation_p.S617R|PEG3_uc010etr.2_Missense_Mutation_p.S743R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	743					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CGTCCTCATCACTTTCAAGAG	0.413													66	128					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57641439	57641439	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr19:57641439C>T	uc002qny.2	+	4	1752	c.1396C>T	c.(1396-1398)CCT>TCT	p.P466S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	466					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAAACCACTTCCTTTGTCCAT	0.383													66	112					0	0	1	0	0
WDR43	23160	broad.mit.edu	37	2	29152564	29152564	+	Silent	SNP	T	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:29152564T>C	uc002rmo.2	+	11	1457	c.1425T>C	c.(1423-1425)TTT>TTC	p.F475F		NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	475						nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GTAACGATTTTGAAATGCTAA	0.348													19	45					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	31010032	31010032	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:31010032C>T	uc002rnn.2	-	2	336	c.160G>A	c.(160-162)GAA>AAA	p.E54K	CAPN13_uc002rnp.1_Missense_Mutation_p.E54K	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	54	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGGCGTTTTTCCTGGAGCAGC	0.577													3	8					0	0	1	0	0
RPS27A	6233	broad.mit.edu	37	2	55462591	55462591	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:55462591C>A	uc010yow.1	+	6	546	c.349C>A	c.(349-351)CTT>ATT	p.L117I	C2orf63_uc002ryj.2_5'Flank|RPS27A_uc002ryk.2_Missense_Mutation_p.L117I|RPS27A_uc002ryl.2_RNA|RPS27A_uc002rym.2_RNA	NM_001135592	NP_001129064	P62979	RS27A_HUMAN	ubiquitin and ribosomal protein S27a precursor	117					activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	metal ion binding|structural constituent of ribosome			ovary(1)	1						AATTAGTCGCCTTCGTCGAGA	0.393													66	103					1.25706e-45	1.28563e-45	1	1	0
EFEMP1	2202	broad.mit.edu	37	2	56097970	56097970	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:56097970G>A	uc002rzh.2	-	10	1535	c.1205C>T	c.(1204-1206)TCT>TTT	p.S402F	EFEMP1_uc002rzi.2_Missense_Mutation_p.S402F|EFEMP1_uc002rzj.2_Missense_Mutation_p.S402F|EFEMP1_uc010ypc.1_Missense_Mutation_p.S264F	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	402	Mediates interaction with TIMP3.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGACCTATCAGATCGGATGCT	0.433													33	57					0	0	1	0	0
PUS10	150962	broad.mit.edu	37	2	61192596	61192596	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:61192596G>A	uc010fci.2	-	7	699	c.639C>T	c.(637-639)GTC>GTT	p.V213V	PUS10_uc002sao.2_Silent_p.V213V|PUS10_uc010ypk.1_Intron	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	213					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			GGTGAGCAAAGACCACACTCA	0.333													68	97					0	0	1	0	0
FKSG73	440888	broad.mit.edu	37	2	92129528	92129528	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:92129528G>A	uc010yuc.1	+	1	370	c.319G>A	c.(319-321)GAT>AAT	p.D107N		NR_027714				SubName: Full=FKSG73; SubName: Full=FKSG73 protein, isoform CRA_a;												0						CATTTGCCCTGATATAGTCAA	0.408													3	2					0	0	1	0	0
C2orf15	150590	broad.mit.edu	37	2	99767217	99767217	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:99767217G>A	uc002szk.2	+	4	697	c.298G>A	c.(298-300)GGA>AGA	p.G100R	TSGA10_uc002szi.3_Intron|MRPL30_uc002szl.1_Intron	NM_144706	NP_653307	Q8WU43	CB015_HUMAN	hypothetical protein LOC150590	100											0						GACTGGCACAGGATCTCTTTC	0.393													29	72					0	0	1	0	0
IL1F9	56300	broad.mit.edu	37	2	113737702	113737702	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:113737702G>A	uc002tio.1	+	4	346	c.277G>A	c.(277-279)GAA>AAA	p.E93K	IL1F9_uc010fkr.1_Missense_Mutation_p.E58K	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	93					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GAAGGTTGGAGAACAGCCCAC	0.378													9	34					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179454279	179454279	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179454279C>T	uc010zfg.1	-	253	54693	c.54469G>A	c.(54469-54471)GAA>AAA	p.E18157K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E11852K|TTN_uc010zfi.1_Missense_Mutation_p.E11785K|TTN_uc010zfj.1_Missense_Mutation_p.E11660K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19084							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGTGAGTTTCTTTAATGCTT	0.433													43	59					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179485469	179485469	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179485469T>A	uc010zfg.1	-	196	38388	c.38164A>T	c.(38164-38166)AAA>TAA	p.K12722*	TTN_uc010zfh.1_Nonsense_Mutation_p.K6417*|TTN_uc010zfi.1_Nonsense_Mutation_p.K6350*|TTN_uc010zfj.1_Nonsense_Mutation_p.K6225*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13649							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGCACTTTTAACATTTTCA	0.318													106	146					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599632	179599632	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179599632C>T	uc010zfg.1	-	48	11511	c.11287G>A	c.(11287-11289)GGC>AGC	p.G3763S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G424S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4690							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGGTGAGCCTTTCAGCTTG	0.418													6	19					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179610476	179610476	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179610476C>T	uc002unb.2	-	46	16875	c.16651G>A	c.(16651-16653)GGA>AGA	p.G5551R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9021							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTAATTTTCCATCTTTGTAC	0.418													42	83					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179642155	179642155	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179642155G>A	uc010zfg.1	-	26	4861	c.4637C>T	c.(4636-4638)ACT>ATT	p.T1546I	TTN_uc010zfh.1_Missense_Mutation_p.T1500I|TTN_uc010zfi.1_Missense_Mutation_p.T1500I|TTN_uc010zfj.1_Missense_Mutation_p.T1500I|TTN_uc002unb.2_Missense_Mutation_p.T1546I|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1546							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTTCCACAGTTAAAATCAC	0.378													14	31					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179701691	179701691	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:179701691T>G	uc002unf.1	-	13	2587	c.2530A>C	c.(2530-2532)ACT>CCT	p.T844P	CCDC141_uc002une.1_Missense_Mutation_p.T294P	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	844	Ig-like.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCCATGACAGTTACATTAGAC	0.458													24	40					0	0	1	0	0
UNC80	285175	broad.mit.edu	37	2	210640756	210640756	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:210640756C>T	uc010zjc.1	+	3	365	c.285C>T	c.(283-285)AAC>AAT	p.N95N	UNC80_uc002vdj.1_Silent_p.N95N	NM_032504	NP_115893	Q8N2C7	UNC80_HUMAN	chromosome 2 open reading frame 21 isoform 1	95						integral to membrane					0						TGCTTTCAAACCGAAACAAGC	0.428													57	71					0	0	1	0	0
CUL3	8452	broad.mit.edu	37	2	225346638	225346638	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr2:225346638G>A	uc002vny.2	-	14	2384	c.2000C>T	c.(1999-2001)TCC>TTC	p.S667F	CUL3_uc010zls.1_Missense_Mutation_p.S601F|CUL3_uc010fwy.1_Missense_Mutation_p.S673F	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	667					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		GTGTAGTTTGGATGTGAATTG	0.308													37	58					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6091134	6091134	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr20:6091134G>A	uc002wmr.2	-	5	1346	c.557C>T	c.(556-558)ACC>ATC	p.T186I	FERMT1_uc010gbt.2_Intron|FERMT1_uc002wms.2_Missense_Mutation_p.T186I|FERMT1_uc002wmt.2_5'Flank	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	186	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						AGGGGTCATGGTTTTACTGTA	0.418													58	75					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566150	19566150	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr20:19566150C>T	uc002wrl.2	+	6	771	c.574C>T	c.(574-576)CTG>TTG	p.L192L		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	192	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ATTCAACATCCTGTGCATCAT	0.537													55	77					0	0	1	0	0
CSTL1	128817	broad.mit.edu	37	20	23420915	23420915	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr20:23420915G>A	uc002wte.2	+	2	257	c.11G>A	c.(10-12)GGA>GAA	p.G4E	CSTL1_uc010zsu.1_RNA|CSTL1_uc010zsv.1_RNA	NM_138283	NP_612140	Q9H114	CST1L_HUMAN	cystatin-like 1 precursor	4						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0993)|Lung NSC(19;0.235)					ATGGGGATCGGATGCTGGAGA	0.567													33	50					0	0	1	0	0
PREX1	57580	broad.mit.edu	37	20	47246052	47246052	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr20:47246052G>A	uc002xtw.1	-	37	4724	c.4701C>T	c.(4699-4701)ATC>ATT	p.I1567I	PREX1_uc002xtv.1_Silent_p.I864I	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1567					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCTCCGAGGAGATGGGGATGA	0.652													34	48					0	0	1	0	0
APCDD1L	164284	broad.mit.edu	37	20	57036482	57036482	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr20:57036482C>T	uc002xze.1	-	4	1056	c.870G>A	c.(868-870)GAG>GAA	p.E290E	APCDD1L_uc010zzp.1_Silent_p.E301E	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	290						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			CTGGGCGCACCTCGCACCCCG	0.692													7	5					0	0	1	0	0
APP	351	broad.mit.edu	37	21	27354788	27354788	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr21:27354788G>A	uc002ylz.2	-	9	1293	c.1093C>T	c.(1093-1095)CCT>TCT	p.P365S	APP_uc010glk.2_Missense_Mutation_p.P341S|APP_uc002yma.2_Missense_Mutation_p.P346S|APP_uc011ach.1_Missense_Mutation_p.P309S|APP_uc002ymb.2_Missense_Mutation_p.P290S|APP_uc010glj.2_Missense_Mutation_p.P234S|APP_uc011aci.1_Missense_Mutation_p.P255S	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	365	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				GCTGTTGTAGGAACTATAAAG	0.418													14	33					0	0	1	0	0
B3GALT5	10317	broad.mit.edu	37	21	41032753	41032753	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr21:41032753G>A	uc002yyb.1	+	5	859	c.267G>A	c.(265-267)AAG>AAA	p.K89K	B3GALT5_uc002yye.2_Silent_p.K89K|B3GALT5_uc002yyi.1_Silent_p.K89K|B3GALT5_uc002yyj.1_Silent_p.K89K|B3GALT5_uc002yyk.1_Silent_p.K89K|B3GALT5_uc002yyl.1_Silent_p.K89K|B3GALT5_uc002yym.1_Silent_p.K89K	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	89	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				TGAAGGGAAAGCAGCTGAAGA	0.587													19	26					0	0	1	0	0
BACE2	25825	broad.mit.edu	37	21	42629153	42629153	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr21:42629153C>T	uc002yyw.2	+	8	1666	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	BACE2_uc002yyx.2_Silent_p.S351S|BACE2_uc002yyy.2_Intron|BACE2_uc010goo.2_Intron	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	401	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				TTTCCCCATCCACAAATGCGC	0.552													25	8					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45860723	45860723	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr21:45860723G>A	uc002zet.1	+	32	4534	c.4321G>A	c.(4321-4323)GAG>AAG	p.E1441K	TRPM2_uc002zeu.1_Missense_Mutation_p.E1441K|TRPM2_uc002zew.1_Missense_Mutation_p.E1441K|TRPM2_uc010gpt.1_Missense_Mutation_p.E1491K|TRPM2_uc002zex.1_Missense_Mutation_p.E1227K|TRPM2_uc002zey.1_Missense_Mutation_p.E920K|TRPM2_uc011aff.1_Missense_Mutation_p.E122K	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1441	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGCCTGGATCGAGACGGTGGC	0.622													50	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18844885	18844885	+	RNA	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:18844885G>A	uc002zoe.2	+	4		c.2139G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCAGCTCACGGAAATACAGCT	0.587													3	26					0	0	1	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843138	22843138	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:22843138C>T	uc002zwc.1	-	4	1362	c.586G>A	c.(586-588)GAA>AAA	p.E196K	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GAATTTCCTTCTATAATTCCA	0.378													69	97					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23090157	23090157	+	RNA	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:23090157C>T	uc011aim.1	+	203		c.10451C>T								Parts of antibodies, mostly variable regions.												0						TGTCAGTGTCCCTAGGACAGA	0.537													31	54					0	0	1	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659838	24659838	+	RNA	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:24659838G>A	uc002zzs.3	+	7		c.3570G>A			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						GGACGGTGACGAAGGTACCCA	0.587													2	1					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28193562	28193562	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:28193562G>A	uc003adj.2	-	1	3925	c.2970C>T	c.(2968-2970)TCC>TCT	p.S990S		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	990							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						TCTCGCCTGCGGAGCTTCCCC	0.711			T	ETV6	AML|meningioma								5	19					0	0	1	0	0
RFPL1	5988	broad.mit.edu	37	22	29837951	29837951	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:29837951C>T	uc003afn.2	+	2	1003	c.794C>T	c.(793-795)TCC>TTC	p.S265F	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	265	B30.2/SPRY.						zinc ion binding				0						GAAGGTGGTTCCCATGTCTAT	0.473													6	106					0	0	1	0	0
RFPL2	10739	broad.mit.edu	37	22	32586919	32586919	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:32586919G>A	uc003amg.3	-	5	1913	c.977C>T	c.(976-978)TCC>TTC	p.S326F	RFPL2_uc003ame.3_Missense_Mutation_p.S265F|RFPL2_uc003amf.3_Missense_Mutation_p.S236F|RFPL2_uc003amh.3_Missense_Mutation_p.S236F	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	326	B30.2/SPRY.						zinc ion binding			skin(1)	1						ATAGACATGGGAACCACTTTC	0.483													12	30					0	0	1	0	0
EIF3D	8664	broad.mit.edu	37	22	36913424	36913424	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:36913424G>A	uc003apq.2	-	10	1030	c.914C>T	c.(913-915)TCC>TTC	p.S305F	EIF3D_uc011amr.1_Missense_Mutation_p.S132F|EIF3D_uc003apr.2_Missense_Mutation_p.S305F|EIF3D_uc011ams.1_Missense_Mutation_p.S208F|EIF3D_uc011amt.1_Missense_Mutation_p.S256F	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	305						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						TGAATTGAAGGAATTACCTTC	0.512													27	28					0	0	1	0	0
TTLL12	23170	broad.mit.edu	37	22	43570232	43570232	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:43570232G>A	uc003bdq.2	-	8	1244	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	TTLL12_uc003bdr.1_Silent_p.F404F	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	404	TTL.				protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				CCCGCTGCTGGAAGTAGCTGA	0.667													49	87					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43617226	43617226	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:43617226G>A	uc003bdt.1	-	13	1590	c.1502C>T	c.(1501-1503)CCC>CTC	p.P501L		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	501					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CTGGCTGTGGGGCCGGAGGTG	0.642													9	26					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654698	46654698	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr22:46654698G>A	uc003bhh.2	-	1	4522	c.4522C>T	c.(4522-4524)CTT>TTT	p.L1508F		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1508	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GCCTTTGGAAGCCTGGGCTTT	0.502													84	136					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49699266	49699266	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:49699266C>T	uc003cxe.3	+	6	10102	c.9988C>T	c.(9988-9990)CGA>TGA	p.R3330*		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3330					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCATGGGGCTCGAGTAGAGAA	0.617													15	26					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121354627	121354627	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:121354627C>T	uc003eeh.3	-	9	771	c.646G>A	c.(646-648)GAG>AAG	p.E216K	HCLS1_uc011bjj.1_Missense_Mutation_p.E179K|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	216					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		GTCGGGGCCTCCATTTCATTG	0.547													35	57					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121648188	121648188	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:121648188A>G	uc003eep.2	+	17	1699	c.1546A>G	c.(1546-1548)ACC>GCC	p.T516A	SLC15A2_uc011bjn.1_Missense_Mutation_p.T485A	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	516					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGGGATGACAACCGTGAGGTT	0.393													47	77					0	0	1	0	0
ACAD11	84129	broad.mit.edu	37	3	132361569	132361569	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:132361569A>C	uc003eov.3	-	3	707	c.327T>G	c.(325-327)AGT>AGG	p.S109R	ACAD11_uc003eoy.2_Missense_Mutation_p.S109R	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	109						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						CAGAAGTATCACTGCAGTACA	0.323													75	107					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142185365	142185365	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:142185365C>G	uc003eux.3	-	40	6820	c.6698G>C	c.(6697-6699)AGT>ACT	p.S2233T	ATR_uc003euy.1_Missense_Mutation_p.S119T	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2233			S -> I (in a lung large cell carcinoma sample; somatic mutation).		cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity	p.S2233I(1)		lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGTGGAACTACTTCCATCAAC	0.289								Other_conserved_DNA_damage_response_genes					20	30					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178928317	178928317	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:178928317C>T	uc003fjk.2	+	9	1660	c.1503C>T	c.(1501-1503)TCC>TCT	p.S501S		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	501					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GGTCTGTATCCCGAGAAGCAG	0.413		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			40	68					0	0	1	0	0
CLCN2	1181	broad.mit.edu	37	3	184069861	184069861	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr3:184069861G>A	uc003foi.2	-	22	2479	c.2355C>T	c.(2353-2355)TTC>TTT	p.F785F	CLCN2_uc003foh.2_Intron|CLCN2_uc010hya.1_Silent_p.F768F|CLCN2_uc011brl.1_Silent_p.F785F|CLCN2_uc011brm.1_Silent_p.F741F	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	785	Cytoplasmic (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	TGCAGTCACTGAAGTTGACAG	0.557													59	90					0	0	1	0	0
GBA3	57733	broad.mit.edu	37	4	22820516	22820516	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:22820516C>T	uc003gqp.3	+	6	1471	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	GBA3_uc010iep.2_Silent_p.I153I|GBA3_uc011bxo.1_3'UTR	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	460					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						CCAAGATCATCCGAAACAATG	0.483													14	21					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005391	25005391	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:25005391G>A	uc003grf.2	-	8	1419	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	440	EAR 5.					extracellular region					0		Breast(46;0.173)				GGGAGTCCCCGATGAAGCGGG	0.537													128	176					0	0	1	0	0
CNGA1	1259	broad.mit.edu	37	4	47938616	47938616	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:47938616C>T	uc003gxt.3	-	11	2161	c.1895G>A	c.(1894-1896)GGG>GAG	p.G632E	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.G701E	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	632	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						GTCTACTGACCCCTCCATTCG	0.428													56	116					0	0	1	0	0
NIPAL1	152519	broad.mit.edu	37	4	48018892	48018892	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:48018892C>T	uc003gxw.2	+	1	102	c.36C>T	c.(34-36)CCC>CCT	p.P12P	CNGA1_uc003gxv.1_5'Flank	NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	12	Extracellular (Potential).					integral to membrane					0						CCGGAGAGCCCTGCCGAGAAG	0.706													2	4					0	0	1	0	0
OCIAD2	132299	broad.mit.edu	37	4	48887541	48887541	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:48887541C>T	uc003gyt.2	-	7	628	c.425G>A	c.(424-426)GGA>GAA	p.G142E	OCIAD2_uc003gyu.2_3'UTR	NM_001014446	NP_001014446	Q56VL3	OCAD2_HUMAN	OCIA domain containing 2 isoform 1	142						endosome					0						CTCACTTAATCCATGCTTTAT	0.398													73	126					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52862127	52862127	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:52862127C>G	uc003gzi.2	-	4	1074	c.1061G>C	c.(1060-1062)AGG>ACG	p.R354T		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	354						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TCTAACACTCCTTGGCAGCCG	0.602													12	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88814571	88814571	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:88814571G>A	uc010iko.1	+	4	1198	c.1198G>A	c.(1198-1200)GAG>AAG	p.E400K						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GCAGCTCAAGGAGTTTGATGG	0.507													11	25					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958083	121958083	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:121958083C>T	uc003idq.1	-	4	1570	c.1043G>A	c.(1042-1044)GGG>GAG	p.G348E		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	348											0						TGTTATCTTCCCATCTTTTAG	0.423													42	76					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123176364	123176364	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:123176364T>A	uc003ieh.2	+	38	6349	c.6304T>A	c.(6304-6306)TCA>ACA	p.S2102T	KIAA1109_uc003iel.1_Missense_Mutation_p.S37T|KIAA1109_uc003iek.2_Missense_Mutation_p.S721T	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2102					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGAAAATCCTTCATGTTTACT	0.328													41	77					0	0	1	0	0
ELF2	1998	broad.mit.edu	37	4	139981786	139981786	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:139981786C>T	uc003ihp.1	-	8	1019	c.813G>A	c.(811-813)CAG>CAA	p.Q271Q	ELF2_uc003ihm.1_Silent_p.Q223Q|ELF2_uc003ihn.1_Silent_p.Q211Q|ELF2_uc003iho.1_Silent_p.Q194Q|ELF2_uc011chc.1_Silent_p.Q86Q	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	283	ETS.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					ATACAAGCCTCTGTCCTTCAA	0.383													63	82					0	0	1	0	0
SMAD1	4086	broad.mit.edu	37	4	146475004	146475004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:146475004C>T	uc003ikc.2	+	6	1482	c.1066C>T	c.(1066-1068)CAA>TAA	p.Q356*	SMAD1_uc003ikd.2_Nonsense_Mutation_p.Q356*|SMAD1_uc010iov.2_Nonsense_Mutation_p.Q356*|SMAD1_uc011cic.1_Nonsense_Mutation_p.Q317*	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	356	MH2.				BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					CATCTTTGTGCAAAGTCGGAA	0.398													51	94					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505870	155505870	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:155505870C>A	uc003iod.1	-	6	2065	c.2007G>T	c.(2005-2007)TTG>TTT	p.L669F		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	669	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GCCATCCTCCCAAACTGGTCT	0.448													42	65					8.16277e-20	8.27308e-20	1	1	0
TLL1	7092	broad.mit.edu	37	4	166996110	166996110	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:166996110C>T	uc003irh.1	+	17	2916	c.2269C>T	c.(2269-2271)CGT>TGT	p.R757C	TLL1_uc011cjn.1_Missense_Mutation_p.R780C|TLL1_uc011cjo.1_Missense_Mutation_p.R581C	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	757	EGF-like 2; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GTGTCAATGCCGTAATGGATT	0.408													65	99					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169327845	169327845	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:169327845C>T	uc003irq.3	-	23	3213	c.2992G>A	c.(2992-2994)GGA>AGA	p.G998R	DDX60L_uc003irr.1_Missense_Mutation_p.G998R|DDX60L_uc003irs.1_Missense_Mutation_p.G693R	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	998							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GGTGGGAATCCATACTTTTCA	0.363													10	11					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183720886	183720886	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:183720886G>A	uc003ivd.1	+	27	7519	c.7482G>A	c.(7480-7482)TCG>TCA	p.S2494S		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2494	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CGGTCAAGTCGCTGATCGGCA	0.572													2	3					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	10973626	10973627	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr5:10973626_10973627GG>AA	uc003jfa.1	-	22	3761_3762	c.3616_3617CC>TT	c.(3616-3618)CCC>TTC	p.P1206F	CTNND2_uc010itt.2_Missense_Mutation_p.P1115F|CTNND2_uc011cmy.1_Missense_Mutation_p.P869F|CTNND2_uc011cmz.1_Missense_Mutation_p.P773F|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.P798F	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1206					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTCACTGTAGGGACGGGCAGCT	0.619													18	41					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13859564	13859564	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr5:13859564G>A	uc003jfd.2	-	30	4989	c.4947C>T	c.(4945-4947)CCC>CCT	p.P1649P		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1649	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACAAAACCTTGGGCAGCTGCT	0.408									Kartagener_syndrome				39	61					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89971991	89971991	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr5:89971991C>T	uc003kju.2	+	25	5504	c.5408C>T	c.(5407-5409)TCT>TTT	p.S1803F	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1803	Extracellular (Potential).|Calx-beta 12.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTGGAAAAATCTTTTAAAGTT	0.328													9	5					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724284	140724284	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr5:140724284C>T	uc003ljm.1	+	1	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Silent_p.I228I	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	228	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTTGCACATCCAAGTGATAG	0.547													20	9					0	0	1	0	0
RPP40	10799	broad.mit.edu	37	6	4995379	4995379	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:4995379A>C	uc003mwl.2	-	8	1060	c.1025T>G	c.(1024-1026)GTG>GGG	p.V342G	RPP40_uc003mwm.2_Missense_Mutation_p.V319G	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	342					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				ATTAAAAATCACAAAGTTATA	0.358													40	61					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24448150	24448150	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:24448150C>T	uc003ned.1	-	17	1744	c.1633G>A	c.(1633-1635)GGA>AGA	p.G545R	GPLD1_uc010jpr.1_Missense_Mutation_p.G382R|GPLD1_uc010jps.1_Missense_Mutation_p.G545R	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	545	FG-GAP 3.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						GCCACAATTCCCTTCTGCTTC	0.552													18	30					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779455	31779455	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:31779455C>T	uc003nxh.2	-	2	478	c.295G>A	c.(295-297)GAA>AAA	p.E99K	HSPA1L_uc010jte.2_Missense_Mutation_p.E99K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	99					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TTGCCTCCTTCATTAATCACT	0.413													45	84					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159118	39159118	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:39159118T>C	uc003oon.2	-	5	1412	c.1048A>G	c.(1048-1050)AAC>GAC	p.N350D		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	350					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGCACCCGGTTCTTGGAGTAG	0.672													16	23					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55933860	55933861	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:55933860_55933861CC>TA	uc003pcs.2	-	22	2306_2307	c.2074_2075GG>TA	c.(2074-2076)GGG>TAG	p.G692*	COL21A1_uc010jzz.2_Nonsense_Mutation_p.G77*|COL21A1_uc011dxg.1_Nonsense_Mutation_p.G77*|COL21A1_uc011dxh.1_Nonsense_Mutation_p.G77*|COL21A1_uc003pcr.2_Missense_Mutation_p.G50R	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	692	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCTTGAATCCCGGGTAAACCC	0.406													7	17					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70082311	70082311	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:70082311G>A	uc003pev.3	+	30	4701	c.4253G>A	c.(4252-4254)CGA>CAA	p.R1418Q	BAI3_uc010kak.2_Missense_Mutation_p.R1418Q|BAI3_uc011dxx.1_Missense_Mutation_p.R624Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1418	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGAAAATCACGATATTCAGAC	0.219													10	9					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72975138	72975138	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:72975138G>A	uc003pga.2	+	21	3317	c.3240G>A	c.(3238-3240)CAG>CAA	p.Q1080Q	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Intron|RIMS1_uc010kaq.2_Intron|RIMS1_uc011dyc.1_Intron|RIMS1_uc010kar.2_Intron|RIMS1_uc011dyd.1_Intron|RIMS1_uc003pgf.2_Intron|RIMS1_uc003pgg.2_Intron|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Intron|RIMS1_uc003pgd.2_Intron|RIMS1_uc003pge.2_Intron|RIMS1_uc011dye.1_Intron|RIMS1_uc011dyf.1_Intron|RIMS1_uc010kas.1_Intron	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1080					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TGACTAGACAGGACATTTCCC	0.294													17	37					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117252517	117252517	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:117252517C>T	uc003pxm.2	+	19	2698	c.2635C>T	c.(2635-2637)CCT>TCT	p.P879S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	879					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AACCCCAATTCCTTCTTCCTC	0.398													26	111					0	0	1	0	0
MED23	9439	broad.mit.edu	37	6	131940974	131940974	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:131940974G>A	uc003qcs.1	-	8	834	c.660C>T	c.(658-660)TCC>TCT	p.S220S	MED23_uc003qcq.2_Silent_p.S220S|MED23_uc003qct.1_Silent_p.S220S|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	220					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		TACCACAAATGGAGTTTATCC	0.348													15	49					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584591	138584591	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:138584591C>T	uc003qhu.2	+	12	1971	c.1971C>T	c.(1969-1971)GCC>GCT	p.A657A		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	657	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GAACTGCCGCCCTGTCTCTAA	0.607													33	40					0	0	1	0	0
STX11	8676	broad.mit.edu	37	6	144507793	144507793	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:144507793A>G	uc003qks.3	+	2	221	c.29A>G	c.(28-30)GAC>GGC	p.D10G		NM_003764	NP_003755	O75558	STX11_HUMAN	syntaxin 11	10					cellular membrane fusion|intracellular protein transport|vesicle-mediated transport	Golgi apparatus|membrane	SNAP receptor activity			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(155;2.17e-06)|GBM - Glioblastoma multiforme(68;0.0492)		GAACTTCTGGACTTGTCCAAG	0.473									Familial_Hemophagocytic_Lymphohistiocytosis				20	46					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159646711	159646711	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:159646711T>A	uc010kjv.2	+	8	1229	c.1029T>A	c.(1027-1029)GAT>GAA	p.D343E	FNDC1_uc010kjw.1_Missense_Mutation_p.D291E	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	343	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GTGAAAGAGATGGCAAATGGA	0.413													38	51					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159660580	159660580	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr6:159660580C>T	uc010kjv.2	+	14	4412	c.4212C>T	c.(4210-4212)GAC>GAT	p.D1404D	FNDC1_uc010kjw.1_Silent_p.D1289D	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1404						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TGAGTCCTGACGGCCTCCCAC	0.512													6	6					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18684372	18684372	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:18684372C>T	uc003suh.2	+	8	1023	c.982C>T	c.(982-984)CCC>TCC	p.P328S	HDAC9_uc003sue.2_Missense_Mutation_p.P328S|HDAC9_uc011jyd.1_Missense_Mutation_p.P328S|HDAC9_uc003sui.2_Missense_Mutation_p.P331S|HDAC9_uc003suj.2_Missense_Mutation_p.P287S|HDAC9_uc011jya.1_Missense_Mutation_p.P325S|HDAC9_uc003sua.1_Missense_Mutation_p.P306S|HDAC9_uc011jyb.1_Missense_Mutation_p.P284S|HDAC9_uc003sud.1_Missense_Mutation_p.P328S|HDAC9_uc011jyc.1_Missense_Mutation_p.P287S|HDAC9_uc003suf.1_Missense_Mutation_p.P359S|HDAC9_uc010kud.1_Missense_Mutation_p.P331S|HDAC9_uc011jye.1_Missense_Mutation_p.P300S|HDAC9_uc011jyf.1_Missense_Mutation_p.P251S|HDAC9_uc010kue.1_Missense_Mutation_p.P71S	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	328	Interaction with MAPK10 (By similarity).				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TCCTTCTTTGCCCAACATTAC	0.433													13	18					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43590091	43590091	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:43590091G>A	uc003tid.1	+	27	4901	c.4296G>A	c.(4294-4296)ACG>ACA	p.T1432T	HECW1_uc011kbi.1_Silent_p.T1398T	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1432	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CACAGGTGACGGAGAAAAACA	0.547													14	11					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415762	86415762	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:86415762C>T	uc003uid.2	+	3	1753	c.654C>T	c.(652-654)TCC>TCT	p.S218S	GRM3_uc010lef.2_Silent_p.S216S|GRM3_uc010leg.2_Silent_p.S90S|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	218	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CAGTAGCCTCCGAGGGTGATT	0.602													25	42					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94054434	94054434	+	Silent	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:94054434A>G	uc003ung.1	+	42	3150	c.2679A>G	c.(2677-2679)GAA>GAG	p.E893E	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	893					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TTTAGGGTGAACCTGGTCCTC	0.542										HNSCC(75;0.22)			11	27					0	0	1	0	0
TECPR1	25851	broad.mit.edu	37	7	97854188	97854188	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:97854188G>C	uc003upg.2	-	19	2820	c.2615C>G	c.(2614-2616)TCC>TGC	p.S872C		NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	872						integral to membrane	protein binding			pancreas(1)	1						GAACCAGTCGGAAACCTGGGA	0.642													2	0					0	0	1	0	0
PLOD3	8985	broad.mit.edu	37	7	100855889	100855889	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:100855889C>T	uc003uyd.2	-	9	1383	c.927G>A	c.(925-927)CCG>CCA	p.P309P	PLOD3_uc010lhs.2_5'UTR	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	309					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	GGGGCAGAAACGGAGTAGGCT	0.617													20	32					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518106	113518106	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:113518106A>G	uc010ljy.1	-	4	3072	c.3041T>C	c.(3040-3042)ATC>ACC	p.I1014T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1014					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AGGTTTGTTGATTAAAATCAT	0.383													84	111					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142640576	142640576	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr7:142640576G>A	uc003wcb.2	-	15	1910	c.1700C>T	c.(1699-1701)CCC>CTC	p.P567L		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	567	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CCCATACCTGGGATAGCCAGG	0.532													14	22					0	0	1	0	0
PNMA2	10687	broad.mit.edu	37	8	26365392	26365392	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:26365392G>A	uc003xez.2	-	3	1650	c.880C>T	c.(880-882)CGC>TGC	p.R294C		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	294					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		tgctccaggcggacctggtcc	0													16	8					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53071640	53071640	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:53071640G>A	uc003xqz.2	-	10	1780	c.1624C>T	c.(1624-1626)CCT>TCT	p.P542S	ST18_uc011ldq.1_Missense_Mutation_p.P189S|ST18_uc011ldr.1_Missense_Mutation_p.P507S|ST18_uc011lds.1_Missense_Mutation_p.P447S|ST18_uc003xra.2_Missense_Mutation_p.P542S|ST18_uc003xrb.2_Missense_Mutation_p.P542S	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	542						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				AGTCGATTAGGAAATTTCACT	0.438													120	60					0	0	1	0	0
ADHFE1	137872	broad.mit.edu	37	8	67356917	67356917	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:67356917C>T	uc003xwb.3	+	5	321	c.287C>T	c.(286-288)TCC>TTC	p.S96F	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.S48F|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_Missense_Mutation_p.S26F|ADHFE1_uc011leq.1_RNA|ADHFE1_uc011ler.1_RNA	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	96					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			GCTATGGATTCCCTAGTGAAG	0.403													443	165					0	0	1	0	0
GDAP1	54332	broad.mit.edu	37	8	75275190	75275190	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:75275190A>G	uc003yah.2	+	5	675	c.596A>G	c.(595-597)CAT>CGT	p.H199R	GDAP1_uc011lfj.1_Missense_Mutation_p.H84R|GDAP1_uc003yai.2_Missense_Mutation_p.H131R	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	199	GST C-terminal.					cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			CTGCTTGATCATGACAATGTC	0.323													35	258					0	0	1	0	0
RALYL	138046	broad.mit.edu	37	8	85785593	85785593	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:85785593C>T	uc003ycq.3	+	8	1062	c.646C>T	c.(646-648)CGC>TGC	p.R216C	RALYL_uc003ycr.3_Missense_Mutation_p.R216C|RALYL_uc003ycs.3_Missense_Mutation_p.R216C|RALYL_uc010lzy.2_Missense_Mutation_p.R205C|RALYL_uc003yct.3_Missense_Mutation_p.R229C|RALYL_uc003ycu.3_Missense_Mutation_p.R143C|RALYL_uc003ycv.3_Missense_Mutation_p.R128C	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	216	Potential.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CTTGCTAGGGCGCCTGGAGAA	0.423													4	23					0	0	1	0	0
OXR1	55074	broad.mit.edu	37	8	107763103	107763103	+	Silent	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr8:107763103G>A	uc011lht.1	+	16	2658	c.2559G>A	c.(2557-2559)GGG>GGA	p.G853G	OXR1_uc003ymf.2_Silent_p.G825G|OXR1_uc011lhu.1_Silent_p.G818G|OXR1_uc010mcg.2_RNA|OXR1_uc010mch.2_Silent_p.G481G|OXR1_uc003ymk.2_Silent_p.G222G|OXR1_uc003yml.2_Silent_p.G195G	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	853					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			AAACGTTTGGGAATCGTACAC	0.358													47	206					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	21278463	21278463	+	RNA	SNP	A	G	G	rs10120675	by1000genomes	TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr9:21278463A>G	uc003zou.1	-	1		c.100T>C								Messenger RNA for human leukocyte (alpha) interferon.																		CTGTCCTTCAAGTAAGAAAAA	0.478													2	16					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27228284	27228284	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr9:27228284G>T	uc003zqi.3	+	22	3723	c.3281G>T	c.(3280-3282)AGA>ATA	p.R1094I	TEK_uc011lno.1_Missense_Mutation_p.R1051I|TEK_uc011lnp.1_Missense_Mutation_p.R946I	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	1094	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TCCTTAAACAGAATGTTAGAG	0.398													37	15					4.62619e-21	4.70992e-21	1	1	0
VPS13A	23230	broad.mit.edu	37	9	79985430	79985430	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr9:79985430C>T	uc004akr.2	+	65	9103	c.8843C>T	c.(8842-8844)GCC>GTC	p.A2948V	VPS13A_uc004akp.3_Missense_Mutation_p.A2948V|VPS13A_uc004akq.3_Missense_Mutation_p.A2948V|VPS13A_uc004aks.2_Missense_Mutation_p.A2909V	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2948					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGAAGAGAAGCCATGAATAAG	0.468													32	61					0	0	1	0	0
PTPDC1	138639	broad.mit.edu	37	9	96857654	96857654	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr9:96857654C>T	uc004auf.1	+	6	850	c.510C>T	c.(508-510)ATC>ATT	p.I170I	PTPDC1_uc004aug.1_Silent_p.I170I|PTPDC1_uc004auh.1_Silent_p.I222I|PTPDC1_uc010mrj.1_Silent_p.I224I|PTPDC1_uc010mri.1_Silent_p.I222I	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	170	Tyrosine-protein phosphatase.						protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						TTACTACTATCCTAGATATGG	0.398													41	67					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929935	121929935	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr9:121929935A>T	uc004bkc.2	-	8	2169	c.1713T>A	c.(1711-1713)CAT>CAA	p.H571Q		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	571					cell cycle arrest|cell death	cytoplasm	protein binding	p.H571Y(1)		skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AGCCCTCCGAATGGCTCCCGC	0.557													27	39					0	0	1	0	0
STS	412	broad.mit.edu	37	X	7171267	7171267	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:7171267C>T	uc004cry.3	+	2	287	c.42C>T	c.(40-42)TTC>TTT	p.F14F	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	14					female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	TCCTACTGTTCTTTCTGTGGG	0.448									Ichthyosis				18	6					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34149499	34149499	+	Silent	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:34149499C>T	uc004ddg.2	-	1	930	c.897G>A	c.(895-897)GGG>GGA	p.G299G		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	299										ovary(4)|central_nervous_system(1)	5						GACAGAATTTCCCACAAGGGT	0.597													9	6					0	0	1	0	0
DDX3X	1654	broad.mit.edu	37	X	41206171	41206171	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:41206171C>T	uc004dfe.2	+	15	2530	c.1675C>T	c.(1675-1677)CTT>TTT	p.L559F	DDX3X_uc004dff.2_Missense_Mutation_p.L559F|DDX3X_uc011mkq.1_Missense_Mutation_p.L543F|DDX3X_uc011mkr.1_Missense_Mutation_p.L429F|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	559	Helicase C-terminal.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TTTGTTGGATCTTCTTGTTGA	0.403										HNSCC(61;0.18)			44	8					0	0	1	0	0
MIR223	407008	broad.mit.edu	37	X	65238757	65238757	+	RNA	SNP	T	C	C			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:65238757T>C	hsa-mir-223|MI0000300	+			c.46T>C			uc004dwg.1_RNA|uc011mox.1_RNA																	0						ACAAGCTGAGTTGGACACTCC	0.542													8	1					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76845318	76845318	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:76845318G>A	uc004ecp.3	-	27	6435	c.6203C>T	c.(6202-6204)CCC>CTC	p.P2068L	ATRX_uc004ecq.3_Missense_Mutation_p.P2030L|ATRX_uc004eco.3_Missense_Mutation_p.P1853L	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2068	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ATAAATAAGGGGTTTATCTTT	0.308			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						24	6					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105153090	105153090	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:105153090G>T	uc004emd.2	+	13	1760	c.1457G>T	c.(1456-1458)AGG>ATG	p.R486M	NRK_uc010npc.1_Missense_Mutation_p.R154M	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	486	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GCACAGGTTAGGGCACCTAGG	0.537										HNSCC(51;0.14)			9	10					0.00448238	0.00450239	1	1	0
LONRF3	79836	broad.mit.edu	37	X	118123396	118123396	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:118123396C>T	uc004eqw.2	+	4	1116	c.1085C>T	c.(1084-1086)TCT>TTT	p.S362F	LONRF3_uc004eqx.2_Missense_Mutation_p.S321F|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.S106F	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	362					proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CCACATTGTTCTAGTCAGGAG	0.498													32	13					0	0	1	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283718	151283718	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:151283718G>A	uc004ffj.2	-	3	500	c.295C>T	c.(295-297)CCT>TCT	p.P99S		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	99	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TCTGGGTCAGGGGAGGTGCTT	0.532													47	14					0	0	1	0	0
CSAG1	158511	broad.mit.edu	37	X	151904512	151904512	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chrX:151904512A>G	uc004fge.2	+	3	338	c.10A>G	c.(10-12)ACT>GCT	p.T4A	MAGEA12_uc004fgb.2_5'Flank|MAGEA12_uc010ntp.2_5'Flank|MAGEA12_uc004fgc.2_5'Flank|CSAG1_uc004fgf.2_Missense_Mutation_p.T4A|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	4										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AATGTCGGCGACTACAGGTAA	0.224													4	42					0	0	1	0	0
TBL3	10607	broad.mit.edu	37	16	2025061	2025084	+	In_Frame_Del	DEL	CTCACTGGCCTTCAGCGCCGACGG	-	-	rs147896871	byFrequency	TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr16:2025061_2025084delCTCACTGGCCTTCAGCGCCGACGG	uc002cnu.1	+	7	699_722	c.597_620delCTCACTGGCCTTCAGCGCCGACGG	c.(595-621)ACCTCACTGGCCTTCAGCGCCGACGGC>ACC	p.SLAFSADG200del	TBL3_uc002cnv.1_In_Frame_Del_p.SLAFSADG86del|TBL3_uc010bsb.1_In_Frame_Del_p.LTGLQRRR14del|TBL3_uc010bsc.1_In_Frame_Del_p.SLAFSADG86del|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	200_207	WD 4.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						GCGCCGTCACCTCACTGGCCTTCAGCGCCGACGGCCACACCATG	0.643													13	33	---	---	---	---					
CEP192	55125	broad.mit.edu	37	18	13056266	13056268	+	In_Frame_Del	DEL	CTC	-	-			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr18:13056266_13056268delCTC	uc010xac.1	+	19	3757_3759	c.3677_3679delCTC	c.(3676-3681)ACTCCT>ACT	p.P1227del	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_In_Frame_Del_p.P752del|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_5'UTR|CEP192_uc002krs.1_In_Frame_Del_p.P968del	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1227										ovary(4)|pancreas(1)	5						AACCAGTGTACTCCTATTCCCAG	0.502													24	47	---	---	---	---					
GUF1	60558	broad.mit.edu	37	4	44700577	44700577	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D9-A3Z4-01A-11D-A23B-08	TCGA-D9-A3Z4-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	768ebbb6-b7fc-495e-b08a-fccae159dc42	f89fb4bf-e03f-4f76-ad96-069aee98067a	g.chr4:44700577delC	uc003gww.3	+	17	2096	c.1889delC	c.(1888-1890)ACCfs	p.T630fs	GUF1_uc011bza.1_Frame_Shift_Del_p.T37fs	NM_021927	NP_068746	Q8N442	GUF1_HUMAN	GUF1 GTPase homolog	630					translation	mitochondrial inner membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1						GGTGATATTACCCGAAAAATG	0.343													25	73	---	---	---	---					
