Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GBP6	163351	broad.mit.edu	37	1	89849796	89849796	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:89849796G>A	uc001dnf.2	+	10	1887	c.1613G>A	c.(1612-1614)AGA>AAA	p.R538K	GBP6_uc010ost.1_Missense_Mutation_p.R408K	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	538							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		CAGATGGAGAGAGAACACCTA	0.502000													11	1					0	0	0.008291	0	0
TBX15	6913	broad.mit.edu	37	1	119469210	119469210	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:119469210C>T	uc001ehl.1	-	3	441	c.126G>A	c.(124-126)GTG>GTA	p.V42V		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	148	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CAGTGATTTTCACTCTCATGG	0.423000													7	22					0	0	0.006214	0	0
S100A7	6278	broad.mit.edu	37	1	153430314	153430314	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:153430314C>T	uc001fbv.1	-	3	345	c.274G>A	c.(274-276)GGA>AGA	p.G92R		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	92					angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCGCTGCTCCATGGCTCTGC	0.517000													19	51					0	0	0.049695	0	0
OR10R2	343406	broad.mit.edu	37	1	158450467	158450467	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:158450467T>C	uc010pik.1	+	1	800	c.800T>C	c.(799-801)GTT>GCT	p.V267A	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	267	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					CACCTCAGTGTTGTTATTGTT	0.478000													25	20					0	0	0.018920	0	0
KCNT2	343450	broad.mit.edu	37	1	196309582	196309582	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:196309582C>T	uc001gtd.1	-	16	1732	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.E508K|KCNT2_uc001gtf.1_Missense_Mutation_p.E558K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E558K|KCNT2_uc001gth.1_Missense_Mutation_p.E79K	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	558	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GAATTCTCTTCTTTGGTAATA	0.353000													8	31					0	0	0.047766	0	0
CR1	1378	broad.mit.edu	37	1	207803916	207803916	+	Silent	SNP	A	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:207803916A>C	uc001hfy.2	+	38	6197	c.6057A>C	c.(6055-6057)GGA>GGC	p.G2019G	CR1_uc001hfx.2_Silent_p.G2469G	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	2019	Cytoplasmic (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ATTCTCAAGGAGGCAGCAGCG	0.343000													4	16					0	0	0.029380	0	0
IARS2	55699	broad.mit.edu	37	1	220275523	220275523	+	Silent	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:220275523T>C	uc001hmc.2	+	4	707	c.603T>C	c.(601-603)CGT>CGC	p.R201R		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	201					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	CATTTATTCGTTGGGGAATAA	0.313000													16	40					0	0	0.043863	0	0
NLRP3	114548	broad.mit.edu	37	1	247587726	247587726	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:247587726G>A	uc001icr.2	+	5	1119	c.981G>A	c.(979-981)CGG>CGA	p.R327R	NLRP3_uc001ics.2_Silent_p.R327R|NLRP3_uc001icu.2_Silent_p.R327R|NLRP3_uc001icw.2_Silent_p.R327R|NLRP3_uc001icv.2_Silent_p.R327R|NLRP3_uc010pyw.1_Silent_p.R325R|NLRP3_uc001ict.1_Silent_p.R325R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	327	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding	p.R327G(1)		lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGGCCGAGCGGGGAGACATTC	0.582000													18	40					0	0	0.038395	0	0
OR2B11	127623	broad.mit.edu	37	1	247615087	247615087	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:247615087G>A	uc010pyx.1	-	1	198	c.198C>T	c.(196-198)TTC>TTT	p.F66F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GGTGACTGAGGAAGATGTACA	0.572000													18	73					0	0	0.012319	0	0
CDC123	8872	broad.mit.edu	37	10	12259431	12259431	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:12259431G>T	uc001ill.2	+	6	689	c.405G>T	c.(403-405)AAG>AAT	p.K135N	CDC123_uc001ilm.2_Missense_Mutation_p.K135N	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	135					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						TGCTTTTCAAGAGTTCCGATT	0.368000													85	174					1.63549e-45	1.74273e-45	0.048971	1	0
PARD3	56288	broad.mit.edu	37	10	34663808	34663808	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:34663808C>T	uc010qej.1	-	11	1662	c.1662G>A	c.(1660-1662)AGG>AGA	p.R554R	PARD3_uc010qek.1_Silent_p.R554R|PARD3_uc010qel.1_Silent_p.R554R|PARD3_uc010qem.1_Silent_p.R554R|PARD3_uc010qen.1_Silent_p.R554R|PARD3_uc010qeo.1_Silent_p.R554R|PARD3_uc010qep.1_Silent_p.R510R|PARD3_uc010qeq.1_Silent_p.R510R|PARD3_uc001ixo.1_Silent_p.R284R|PARD3_uc001ixp.1_Silent_p.R419R|PARD3_uc001ixq.1_Silent_p.R554R|PARD3_uc001ixr.1_Silent_p.R554R|PARD3_uc001ixt.1_Silent_p.R375R|PARD3_uc001ixu.1_Silent_p.R510R|PARD3_uc001ixs.1_Silent_p.R207R	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	554					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				ACACCAGTTCCCTTGGGTGGA	0.463000													37	78					0	0	0.023175	0	0
PRKG1	5592	broad.mit.edu	37	10	54053573	54053573	+	Silent	SNP	C	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:54053573C>A	uc001jjm.2	+	18	2123	c.1929C>A	c.(1927-1929)CCC>CCA	p.P643P	PRKG1_uc001jjo.2_Silent_p.P658P|PRKG1_uc009xow.1_Silent_p.P361P|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	643	AGC-kinase C-terminal.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TTGCATCACCCACAGACACAA	0.353000													11	25					9.31168e-06	9.60729e-06	0.016723	1	0
ANK3	288	broad.mit.edu	37	10	61831219	61831219	+	Silent	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:61831219T>C	uc001jky.2	-	37	9612	c.9420A>G	c.(9418-9420)CAA>CAG	p.Q3140Q	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3140					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGAAGGAGGTTGCTTTTGCT	0.428000													25	39					0	0	0.018920	0	0
TET1	80312	broad.mit.edu	37	10	70406332	70406332	+	Silent	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:70406332T>C	uc001jok.3	+	4	4351	c.3846T>C	c.(3844-3846)TAT>TAC	p.Y1282Y		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1282					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						ATAAAGCTTATAATTCTCAGG	0.458000													6	39					0	0	0.029380	0	0
DMBT1	1755	broad.mit.edu	37	10	124399762	124399762	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:124399762C>T	uc001lgk.1	+	52	6868	c.6762C>T	c.(6760-6762)GAC>GAT	p.D2254D	DMBT1_uc001lgl.1_Silent_p.D2244D|DMBT1_uc001lgm.1_Silent_p.D1626D|DMBT1_uc009xzz.1_Silent_p.D2253D|DMBT1_uc010qtx.1_Silent_p.D974D|DMBT1_uc009yab.1_Silent_p.D957D|DMBT1_uc009yac.1_Silent_p.D548D	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2254	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCAATTTTGACGTGAACATTT	0.463000													25	48					0	0	0.021523	0	0
MKI67	4288	broad.mit.edu	37	10	129907335	129907335	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:129907335C>T	uc001lke.2	-	13	2964	c.2769G>A	c.(2767-2769)AAG>AAA	p.K923K	MKI67_uc001lkf.2_Silent_p.K563K|MKI67_uc009yav.1_Silent_p.K498K|MKI67_uc009yaw.1_Silent_p.K73K	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	923					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTTCTATTTCCTTCATCTCTC	0.348000													24	31					0	0	0.018920	0	0
APBB1	322	broad.mit.edu	37	11	6417188	6417188	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:6417188T>C	uc001mdb.1	-	13	1893	c.1793A>G	c.(1792-1794)GAG>GGG	p.E598G	APBB1_uc001mcz.1_Missense_Mutation_p.E217G|APBB1_uc001mdd.3_Missense_Mutation_p.E376G|APBB1_uc001mda.2_Missense_Mutation_p.E123G|APBB1_uc001mdc.1_Missense_Mutation_p.E596G|APBB1_uc010rab.1_Missense_Mutation_p.E123G|APBB1_uc001mcy.1_Missense_Mutation_p.R36G	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	598	PID 2.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		CAGCACTGCCTCTGTCTGCAT	0.582000													3	70					0	0	0.004672	0	0
ACCS	84680	broad.mit.edu	37	11	44100295	44100295	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:44100295C>T	uc009yks.1	+	9	938	c.794C>T	c.(793-795)TCC>TTC	p.S265F	EXT2_uc010rfo.1_Intron|ACCS_uc010rfm.1_3'UTR|ACCS_uc001mxx.2_Missense_Mutation_p.S265F	NM_001127219	NP_001120691	Q96QU6	1A1L1_HUMAN	1-aminocyclopropane-1-carboxylate synthase	265							1-aminocyclopropane-1-carboxylate synthase activity|protein homodimerization activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			breast(2)|ovary(1)|lung(1)	4						GATGTATACTCCCCTGAAGAG	0.587000													10	11					0	0	0.013537	0	0
FOLH1	2346	broad.mit.edu	37	11	49175820	49175820	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:49175820C>T	uc001ngy.2	-	16	2109	c.1848G>A	c.(1846-1848)ATG>ATA	p.M616I	FOLH1_uc001ngx.2_Missense_Mutation_p.M48I|FOLH1_uc001ngz.2_Missense_Mutation_p.M616I|FOLH1_uc009yly.2_Missense_Mutation_p.M601I|FOLH1_uc009ylz.2_Missense_Mutation_p.M601I|FOLH1_uc009yma.2_Missense_Mutation_p.M308I	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	616	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GTGGATGTTTCATAGAAATAC	0.348000													22	29					0	0	0.016522	0	0
DDB1	1642	broad.mit.edu	37	11	61090509	61090509	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:61090509G>A	uc001nrc.3	-	8	1205	c.979C>T	c.(979-981)CGC>TGC	p.R327C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R327C|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.R327C|DDB1_uc009ynl.1_Missense_Mutation_p.R214C	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	327	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						TCACCCAGGCGAGACCCGACA	0.438000								NER					16	10					0	0	0.033300	0	0
AHNAK	79026	broad.mit.edu	37	11	62293840	62293840	+	Silent	SNP	A	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:62293840A>T	uc001ntl.2	-	5	8349	c.8049T>A	c.(8047-8049)ATT>ATA	p.I2683I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2683					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTGGTCCTTCAATGTTAACAT	0.483000													22	71					0	0	0.055883	0	0
SHANK2	22941	broad.mit.edu	37	11	70319502	70319502	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:70319502C>T	uc001oqc.2	-	22	5100	c.5022G>A	c.(5020-5022)ACG>ACA	p.T1674T	SHANK2_uc010rqn.1_Silent_p.T1086T|SHANK2_uc001opz.2_Silent_p.T1079T|uc009ysn.1_Intron|SHANK2_uc001opy.2_Silent_p.T10T	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1295					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			AGGTGACCGTCGTGCTCCGTG	0.602000													17	18					0	0	0.038395	0	0
Unknown	0	broad.mit.edu	37	11	71513938	71513938	+	RNA	SNP	T	A	A	rs139766133	by1000genomes	TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:71513938T>A	uc001oqx.1	-	3		c.662A>T								Homo sapiens cDNA clone IMAGE:5297769.																		GGCAAACAGCTCCTGAACATG	0.582000													3	19					0	0	0.004672	0	0
INPPL1	3636	broad.mit.edu	37	11	71939791	71939791	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:71939791C>T	uc001osf.2	+	4	565	c.418C>T	c.(418-420)CCG>TCG	p.P140S	INPPL1_uc001osg.2_5'UTR	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	140					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						TGAGAAGCCCCCGCTGCCCCC	0.652000													19	8					0	0	0.055883	0	0
CHRDL2	25884	broad.mit.edu	37	11	74415556	74415556	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:74415556G>A	uc001ovi.2	-	7	979	c.726C>T	c.(724-726)ATC>ATT	p.I242I	CHRDL2_uc001ovg.2_Silent_p.I126I|CHRDL2_uc001ovh.2_Silent_p.I242I|CHRDL2_uc001ovj.1_RNA|CHRDL2_uc001ovk.1_Silent_p.I242I			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	242					cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CCTTCAGGACGATCTTGACAG	0.637000													14	37					0	0	0.020292	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275831	130275831	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr11:130275831C>T	uc001qgg.3	-	9	2650	c.2292G>A	c.(2290-2292)CTG>CTA	p.L764L	ADAMTS8_uc001qgf.2_Silent_p.L245L	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	764	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CGCTGTACTTCAGGATGGTCC	0.617000													43	29					0	0	0.033182	0	0
GALNT8	26290	broad.mit.edu	37	12	4848450	4848450	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:4848450C>T	uc001qne.1	+	3	723	c.631C>T	c.(631-633)CGA>TGA	p.R211*		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	211	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GACGCCCTCTCGATTGTTGAA	0.428000													23	31					0	0	0.018920	0	0
CD163L1	283316	broad.mit.edu	37	12	7559289	7559289	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:7559289A>C	uc001qsy.2	-	5	952	c.926T>G	c.(925-927)CTT>CGT	p.L309R	CD163L1_uc010sge.1_Missense_Mutation_p.L319R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	309	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGCGAAGTGAAGTGCGGTTCC	0.507000													44	28					0	0	0.048971	0	0
LOC653113	653113	broad.mit.edu	37	12	8386973	8386973	+	RNA	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:8386973C>T	uc010sgk.1	-	4		c.483G>A				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						AGCCAGCCTCCGCAGGACCCC	0.592000													4	42					0	0	0.009096	0	0
SYT10	341359	broad.mit.edu	37	12	33579303	33579303	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:33579303G>A	uc001rll.1	-	2	576	c.279C>T	c.(277-279)ATC>ATT	p.I93I	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	93	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GAAGCGTAGTGATGTTGGAAG	0.423000													13	18					0	0	0.016723	0	0
ACVRL1	94	broad.mit.edu	37	12	52309043	52309043	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:52309043G>A	uc001rzj.2	+	7	1090	c.807G>A	c.(805-807)TCG>TCA	p.S269S	ACVRL1_uc001rzk.2_Silent_p.S269S|ACVRL1_uc010snm.1_Silent_p.S95S	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	269	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CCCGCAACTCGAGCACGCAGC	0.493000									Hereditary_Hemorrhagic_Telangiectasia				31	12					0	0	0.054565	0	0
KRT3	3850	broad.mit.edu	37	12	53189266	53189266	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:53189266G>A	uc001say.2	-	1	627	c.561C>T	c.(559-561)ATC>ATT	p.I187I		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	187	Head.			I -> T (in Ref. 1; CAA28991).	epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TCTGGGGGTCGATCTCCACAT	0.542000													22	26					0	0	0.014323	0	0
OR9K2	441639	broad.mit.edu	37	12	55524316	55524316	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:55524316C>T	uc010spe.1	+	1	764	c.764C>T	c.(763-765)TCT>TTT	p.S255F		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	255	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						AAGATACATTCTACTGAGGGA	0.383000													8	47					0	0	0.038147	0	0
TIMELESS	8914	broad.mit.edu	37	12	56814624	56814625	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:56814624_56814625GG>AA	uc001slf.2	-	25	3249_3250	c.3081_3082CC>TT	c.(3079-3084)ATCCGA>ATTTGA	p.R1028*		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	1028					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TCAGCTGCTCGGATCAGGCAGT	0.525000													13	44					0	0	0.004672	0	0
PTPRB	5787	broad.mit.edu	37	12	71016398	71016398	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:71016398C>A	uc001swc.3	-	3	524	c.480G>T	c.(478-480)AGG>AGT	p.R160S	PTPRB_uc001swa.3_Missense_Mutation_p.R160S|PTPRB_uc001swd.3_Missense_Mutation_p.R159S|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Missense_Mutation_p.R160S	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTCTAGTGCTCCTCACCGAAA	0.413000													6	4					0.00198382	0.00203602	0.029380	1	0
BBS10	79738	broad.mit.edu	37	12	76739666	76739666	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:76739666G>A	uc001syd.1	-	2	2183	c.2099C>T	c.(2098-2100)ACC>ATC	p.T700I		NM_024685	NP_078961	Q8TAM1	BBS10_HUMAN	Bardet-Biedl syndrome 10	700					cellular protein metabolic process|nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	cilium	ATP binding			ovary(1)|skin(1)	2						CATGTCAATGGTTAATATTTT	0.353000									Bardet-Biedl_syndrome				19	19					0	0	0.038395	0	0
PWP1	11137	broad.mit.edu	37	12	108090340	108090341	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:108090340_108090341CC>TT	uc001tmo.1	+	6	679_680	c.592_593CC>TT	c.(592-594)CCT>TTT	p.P198F	PWP1_uc001tmn.1_RNA|PWP1_uc009zuu.1_Missense_Mutation_p.P198F	NM_007062	NP_008993	Q13610	PWP1_HUMAN	periodic tryptophan protein 1	198	WD 1.				transcription, DNA-dependent	nucleus					0						GAATTTTGATCCTAGCCCAGAT	0.332000													19	31					0	0	0.004672	0	0
SVOP	55530	broad.mit.edu	37	12	109306352	109306352	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:109306352C>T	uc010sxh.1	-	15	1778	c.1606G>A	c.(1606-1608)GGT>AGT	p.G536S		NM_018711	NP_061181	Q8N4V2	SVOP_HUMAN	SV2 related protein	536	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	ion transmembrane transporter activity				0						ACACCTGCACCGTGCATTCCT	0.627000													83	55					0	0	0.048971	0	0
CUX2	23316	broad.mit.edu	37	12	111776230	111776230	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:111776230C>T	uc001tsa.1	+	20	3490	c.3337C>T	c.(3337-3339)CCC>TCC	p.P1113S		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1113	CUT 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCTCAATGACCCCCATAACGT	0.587000													25	25					0	0	0.027356	0	0
SDSL	113675	broad.mit.edu	37	12	113873225	113873225	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr12:113873225C>T	uc001tvi.2	+	7	745	c.535C>T	c.(535-537)CTG>TTG	p.L179L	SDSL_uc009zwh.2_Silent_p.L179L	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	179					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TGGGGGTCTCCTGGCCGGGGT	0.662000													12	9					0	0	0.010729	0	0
LNX2	222484	broad.mit.edu	37	13	28130496	28130496	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr13:28130496G>A	uc001url.3	-	7	1732	c.1423C>T	c.(1423-1425)CCA>TCA	p.P475S	LNX2_uc001urm.1_Missense_Mutation_p.P475S	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	475	PDZ 3.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		GATTCATGTGGTTCCTTCTTT	0.438000													10	13					0	0	0.006214	0	0
STOML3	161003	broad.mit.edu	37	13	39542604	39542604	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr13:39542604C>T	uc001uwx.2	-	6	722	c.584G>A	c.(583-585)CGG>CAG	p.R195Q	STOML3_uc010tez.1_Missense_Mutation_p.R186Q	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	195	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CACGGGAATCCGAACATCTTT	0.522000													28	39					0	0	0.037714	0	0
OR4K5	79317	broad.mit.edu	37	14	20389642	20389642	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:20389642G>A	uc010tkw.1	+	1	877	c.877G>A	c.(877-879)GAT>AAT	p.D293N		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAGGAATAGGGATATGAAGGC	0.398000													42	103					0	0	0.036044	0	0
RAB2B	84932	broad.mit.edu	37	14	21931881	21931882	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:21931881_21931882GG>AA	uc010tlt.1	-	6	508_509	c.407_408CC>TT	c.(406-408)GCC>GTT	p.A136V	RAB2B_uc010tls.1_Missense_Mutation_p.A90V|RAB2B_uc001wax.2_Missense_Mutation_p.A71V|RAB2B_uc010ain.2_Missense_Mutation_p.A27V	NM_032846	NP_116235	Q8WUD1	RAB2B_HUMAN	RAB2B protein isoform 1	136					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|plasma membrane	GTP binding			ovary(1)	1	all_cancers(95;0.000858)		Epithelial(56;1.53e-06)|all cancers(55;1.44e-05)	GBM - Glioblastoma multiforme(265;0.00391)		CCCTAGCAAAGGCCTCTCCTTC	0.411000													22	51					0	0	0.004672	0	0
C14orf106	55320	broad.mit.edu	37	14	45687484	45687484	+	Splice_Site	SNP	C	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:45687484C>A	uc001wwf.2	-	12	3301	c.2842_splice	c.e12+1	p.G948_splice		NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106						cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						ACGAAGGTTACCATTTTGGCC	0.353000													38	65					1.32136e-16	1.39278e-16	0.033182	1	0
HIF1A	3091	broad.mit.edu	37	14	62205061	62205061	+	Silent	SNP	C	T	T	rs149282253		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:62205061C>T	uc001xfq.2	+	10	1910	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	HIF1A_uc001xfr.2_Silent_p.S502S|HIF1A_uc001xfs.2_Silent_p.S503S	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	502	ODD.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		CTAGTCCTTCCGATGGAAGCA	0.378000													100	125					0	0	0.048971	0	0
C14orf143	90141	broad.mit.edu	37	14	90263603	90263603	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:90263603C>T	uc001xxt.2	-	6	561	c.476G>A	c.(475-477)GGA>GAA	p.G159E	C14orf143_uc001xxs.2_Missense_Mutation_p.G135E	NM_145231	NP_660274	Q9BUY7	EFC11_HUMAN	hypothetical protein LOC90141	159	EF-hand 3.						calcium ion binding				0		all_cancers(154;0.136)		Epithelial(152;0.194)		TTCCTTCTGTCCATAGTTCAG	0.388000													8	38					0	0	0.038147	0	0
CYP46A1	10858	broad.mit.edu	37	14	100157478	100157478	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:100157478C>T	uc001ygo.2	+	2	180	c.180C>T	c.(178-180)CTC>CTT	p.L60L	CYP46A1_uc001ygn.1_Missense_Mutation_p.S8F	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	60					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GCCGTGTGCTCCAAGATGTGT	0.502000													28	51					0	0	0.045705	0	0
BRF1	2972	broad.mit.edu	37	14	105677571	105677571	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr14:105677571C>T	uc001yqp.2	-	17	2247	c.1884G>A	c.(1882-1884)CTG>CTA	p.L628L	BRF1_uc010tyo.1_Silent_p.L513L|BRF1_uc010typ.1_Silent_p.L535L|BRF1_uc001yqk.2_Silent_p.L154L|BRF1_uc001yql.2_Silent_p.L424L|BRF1_uc001yqo.2_Silent_p.L390L|BRF1_uc010axg.1_Silent_p.L601L|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_3'UTR	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	628					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		CGCTCTCCACCAGCACCGCCT	0.672000													42	40					0	0	0.033182	0	0
C15orf2	23742	broad.mit.edu	37	15	24922213	24922213	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:24922213C>T	uc001ywo.2	+	1	1673	c.1199C>T	c.(1198-1200)TCT>TTT	p.S400F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	400	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGCCCCTTCTTTCTCCCAA	0.532000													4	23					0	0	0.014758	0	0
C15orf55	256646	broad.mit.edu	37	15	34649344	34649344	+	Silent	SNP	C	T	T	rs7163178		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:34649344C>T	uc001zif.2	+	7	3206	c.3051C>T	c.(3049-3051)CTC>CTT	p.L1017L	C15orf55_uc010ucc.1_Silent_p.L1045L|C15orf55_uc010ucd.1_Silent_p.L1035L	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1017						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		ATGAGGAACTCTCCAACTTTG	0.502000			T	BRD3|BRD4	lethal midline carcinoma								10	26					0	0	0.008291	0	0
C15orf54	400360	broad.mit.edu	37	15	39544718	39544719	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:39544718_39544719GG>AA	uc001zkg.2	+	2	750_751	c.382_383GG>AA	c.(382-384)GGG>AAG	p.G128K		NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360	128											0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		TCAGTCTCCTGGGTGGAAGAAC	0.470000													28	69					0	0	0.004672	0	0
RPAP1	26015	broad.mit.edu	37	15	41819403	41819403	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:41819403T>C	uc001zod.2	-	13	1832	c.1708A>G	c.(1708-1710)ATC>GTC	p.I570V		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	570						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GCCAGGCGGATGAGCACAGCC	0.617000													17	13					0	0	0.043863	0	0
SHF	90525	broad.mit.edu	37	15	45464403	45464403	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:45464403C>T	uc001zuy.2	-	6	1402	c.907G>A	c.(907-909)GAG>AAG	p.E303K	SHF_uc010uen.1_Missense_Mutation_p.E119K|SHF_uc010ueo.1_Missense_Mutation_p.E119K|SHF_uc010uep.1_Missense_Mutation_p.E119K|SHF_uc010ueq.1_Missense_Mutation_p.E119K|SHF_uc010uer.1_Intron|SHF_uc010ues.1_Missense_Mutation_p.E166K|SHF_uc010uet.1_Missense_Mutation_p.E119K|SHF_uc010ueu.1_Missense_Mutation_p.E166K	NM_138356	NP_612365	Q7M4L6	SHF_HUMAN	Src homology 2 domain containing F	303										ovary(1)	1		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		CTGCTGGGCTCCATGCTTAGG	0.642000													23	40					0	0	0.021523	0	0
ATP8B4	79895	broad.mit.edu	37	15	50152518	50152518	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:50152518T>A	uc001zxu.2	-	28	3594	c.3452A>T	c.(3451-3453)AAA>ATA	p.K1151I	ATP8B4_uc010ber.2_Missense_Mutation_p.K1024I|ATP8B4_uc010ufd.1_Missense_Mutation_p.K961I|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Missense_Mutation_p.K154I	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1151	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		GGGTGGATTTTTAGCTCGCAT	0.448000													19	59					0	0	0.038395	0	0
Unknown	0	broad.mit.edu	37	15	82620400	82620400	+	RNA	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:82620400T>C	uc010bls.1	+	1		c.493T>C								Homo sapiens mRNA for FLJ00317 protein.																		GACCCAAGGGTCAGCCTGAGT	0.672000													3	15					0	0	0.014758	0	0
ACAN	176	broad.mit.edu	37	15	89401973	89401973	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr15:89401973G>A	uc010upo.1	+	12	6531	c.6157G>A	c.(6157-6159)GAA>AAA	p.E2053K	ACAN_uc010upp.1_Missense_Mutation_p.E2053K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2053					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TATTTCTCAGGAACTAGGCCA	0.517000													16	14					0	0	0.028581	0	0
Unknown	0	broad.mit.edu	37	16	15457701	15457701	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr16:15457701G>A	uc010bvf.1	-	9	812	c.812C>T	c.(811-813)GCT>GTT	p.A271V						RecName: Full=NPIP-like protein 1;																		AGGGGAGTGAGCAGACACTCG	0.562000													3	43					0	0	0.014758	0	0
RLTPR	146206	broad.mit.edu	37	16	67685655	67685655	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr16:67685655G>A	uc002etn.2	+	25	2615	c.2495G>A	c.(2494-2496)TGG>TAG	p.W832*	RLTPR_uc010cel.1_Nonsense_Mutation_p.W825*|RLTPR_uc010vjr.1_Nonsense_Mutation_p.W796*|RLTPR_uc010vjs.1_5'Flank	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	832										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		GGATCCAGCTGGAGGGAGCAG	0.562000													7	2					0	0	0.029380	0	0
CPD	1362	broad.mit.edu	37	17	28789002	28789002	+	Silent	SNP	T	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:28789002T>G	uc002hfb.1	+	19	3753	c.3738T>G	c.(3736-3738)GGT>GGG	p.G1246G	CPD_uc010wbo.1_Silent_p.G999G|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1246	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AAGAGGGAGGTTATTTCCATG	0.393000													20	10					0	0	0.043863	0	0
RAD51L3	5892	broad.mit.edu	37	17	33428002	33428002	+	Silent	SNP	C	T	T	rs147669627		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:33428002C>T	uc002hir.2	-	10	1213	c.957G>A	c.(955-957)CAG>CAA	p.Q319Q	RFFL_uc002hiq.2_Intron|RAD51L3_uc010ctj.2_Missense_Mutation_p.E138K|RAD51L3_uc010wcd.1_Silent_p.Q339Q|RAD51L3_uc002his.2_Silent_p.Q207Q|RAD51L3_uc010ctk.2_Silent_p.Q200Q|RAD51L3_uc010wce.1_Silent_p.Q200Q|RAD51L3_uc002hit.2_Silent_p.Q200Q|RAD51L3_uc002hiu.2_Silent_p.Q142Q	NM_002878	NP_002869	O75771	RA51D_HUMAN	RAD51-like 3 isoform 1	319					DNA repair|reciprocal meiotic recombination	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		ATGTGGCACTCTGCTCTGAGG	0.527000								Direct_reversal_of_damage|Homologous_recombination					47	39					0	0	0.048971	0	0
KRT20	54474	broad.mit.edu	37	17	39041328	39041328	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:39041328C>T	uc002hvl.2	-	1	152	c.110G>A	c.(109-111)GGG>GAG	p.G37E		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	37	Head.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				TCCAGCACCCCCATAAACGCT	0.612000													34	8					0	0	0.023175	0	0
ABCA5	23461	broad.mit.edu	37	17	67261002	67261002	+	Silent	SNP	A	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:67261002A>G	uc002jif.2	-	23	4407	c.3189T>C	c.(3187-3189)TCT>TCC	p.S1063S	ABCA5_uc002jib.2_Silent_p.S29S|ABCA5_uc002jic.2_Silent_p.S286S|ABCA5_uc002jid.2_5'UTR|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Silent_p.S1063S	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1063					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TCCAATATGCAGATGGCAAAA	0.279000													3	64					0	0	0.004672	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436813	72436813	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:72436813G>A	uc002jks.2	+	1	937	c.898G>A	c.(898-900)GTC>ATC	p.V300I	GPRC5C_uc002jkp.2_Missense_Mutation_p.V345I|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.V312I|GPRC5C_uc002jkt.2_Missense_Mutation_p.V300I|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	300	Helical; Name=7; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						CATCCCCGAGGTCTCCCAGGT	0.627000													36	35					0	0	0.017118	0	0
CD300A	11314	broad.mit.edu	37	17	72469802	72469802	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:72469802C>T	uc002jkv.2	+	2	489	c.168C>T	c.(166-168)TTC>TTT	p.F56F	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	56	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						CACAGATTTTCCTATGTGACA	0.557000													14	64					0	0	0.016723	0	0
LLGL2	3993	broad.mit.edu	37	17	73569700	73569700	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr17:73569700C>G	uc002joh.2	+	21	3018	c.2864C>G	c.(2863-2865)CCG>CGG	p.P955R	LLGL2_uc002joi.2_Missense_Mutation_p.P955R|LLGL2_uc010dgg.1_Missense_Mutation_p.P955R|LLGL2_uc002joj.2_Missense_Mutation_p.P944R|LLGL2_uc010wsd.1_Missense_Mutation_p.P582R	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	955					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			AAGAAGGCCCCGAGCCGAGCC	0.667000													5	18					0	0	0.038147	0	0
POTEC	388468	broad.mit.edu	37	18	14543092	14543092	+	Silent	SNP	G	A	A	rs45502401		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr18:14543092G>A	uc010dln.2	-	1	508	c.54C>T	c.(52-54)TTC>TTT	p.F18F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	18										skin(3)	3						TCCTGAGATCGAATGGCTTCT	0.572000													4	31					0	0	0.038147	0	0
DSG3	1830	broad.mit.edu	37	18	29054145	29054145	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr18:29054145G>A	uc002kws.2	+	15	2272	c.2163G>A	c.(2161-2163)ATG>ATA	p.M721I	DSG3_uc002kwt.2_Missense_Mutation_p.M3I	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	721	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GAATGGAAATGACCACTAAGC	0.493000													20	4					0	0	0.055883	0	0
COL5A3	50509	broad.mit.edu	37	19	10100153	10100153	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:10100153C>T	uc002mmq.1	-	25	2124	c.2038G>A	c.(2038-2040)GGC>AGC	p.G680S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	680	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACCAGAGGGCCATCGGATCCT	0.547000													9	14					0	0	0.006214	0	0
LPPR2	64748	broad.mit.edu	37	19	11470537	11470537	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:11470537C>T	uc002mre.1	+	5	633	c.296C>T	c.(295-297)CCA>CTA	p.P99L	LPPR2_uc002mrf.1_Missense_Mutation_p.P74L|LPPR2_uc010dxy.1_5'UTR	NM_022737	NP_073574	Q96GM1	LPPR2_HUMAN	lipid phosphate phosphatase-related protein type	99						integral to membrane	phosphatidate phosphatase activity			large_intestine(1)	1						TTCCCTGCACCACCTTCAGCC	0.647000													11	21					0	0	0.010729	0	0
ZNF823	55552	broad.mit.edu	37	19	11832550	11832550	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:11832550C>T	uc002msm.2	-	4	1925	c.1799G>A	c.(1798-1800)AGA>AAA	p.R600K	ZNF823_uc010xmd.1_Missense_Mutation_p.R418K|ZNF823_uc010dyi.1_Missense_Mutation_p.R556K	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	600	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CCTTTTATGTCTATGCAAGGA	0.393000										HNSCC(68;0.2)			7	30					0	0	0.047766	0	0
ZNF564	163050	broad.mit.edu	37	19	12638475	12638475	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:12638475G>A	uc002mty.2	-	4	657	c.447C>T	c.(445-447)GCC>GCT	p.A149A	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	149	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGAACTGAAGGCTTTCCCAC	0.433000													18	22					0	0	0.038395	0	0
FARSA	2193	broad.mit.edu	37	19	13041108	13041108	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:13041108C>T	uc002mvs.2	-	4	480	c.432G>A	c.(430-432)CGG>CGA	p.R144R	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Silent_p.R144R|FARSA_uc010dyy.1_Silent_p.R65R	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	144					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	CCTGTCCCCCCCGGACCAGCT	0.652000													36	13					0	0	0.054565	0	0
NWD1	284434	broad.mit.edu	37	19	16908608	16908608	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:16908608G>A	uc002neu.3	+	16	3792	c.3370G>A	c.(3370-3372)GAT>AAT	p.D1124N	NWD1_uc002net.3_Missense_Mutation_p.D989N|NWD1_uc002nev.3_Missense_Mutation_p.D918N			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1124							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CATGGCCATGGATCTGGAACA	0.537000													88	81					0	0	0.048971	0	0
CPAMD8	27151	broad.mit.edu	37	19	17025308	17025308	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:17025308C>T	uc002nfb.2	-	29	3960	c.3928G>A	c.(3928-3930)GGT>AGT	p.G1310S		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1263						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGGATCCCACCCTGCAAGGGG	0.612000													18	18					0	0	0.038395	0	0
PSG6	5675	broad.mit.edu	37	19	43414732	43414732	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:43414732G>A	uc002ovj.1	-	3	758	c.706C>T	c.(706-708)CCG>TCG	p.P236S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.P243S|PSG6_uc002ovi.2_Missense_Mutation_p.P237S|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.H236Y|PSG6_uc002ovg.1_Missense_Mutation_p.P236S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	236					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				AGATACTCACGGAGGAGATTC	0.527000													103	84					0	0	0.048971	0	0
LIG1	3978	broad.mit.edu	37	19	48643347	48643347	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr19:48643347G>A	uc002pia.1	-	12	1088	c.968C>T	c.(967-969)TCG>TTG	p.S323L	LIG1_uc010xze.1_Missense_Mutation_p.S16L|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.S255L|LIG1_uc010xzg.1_Missense_Mutation_p.S292L|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	323					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GTCTGGAGGCGACAGGGCCAC	0.632000								NER					10	35					0	0	0.008291	0	0
NT5C1B	93034	broad.mit.edu	37	2	18766202	18766203	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:18766202_18766203GG>AA	uc002rcz.2	-	5	584_585	c.480_481CC>TT	c.(478-483)TCCCCA>TCTTCA	p.P161S	NT5C1B_uc002rcy.2_Missense_Mutation_p.P161S|NT5C1B_uc010exr.2_Missense_Mutation_p.P103S|NT5C1B_uc010yju.1_Missense_Mutation_p.P101S|NT5C1B_uc002rda.2_Missense_Mutation_p.P101S|NT5C1B_uc010yjv.1_Missense_Mutation_p.P178S|NT5C1B_uc010yjw.1_Missense_Mutation_p.P144S|NT5C1B_uc010exs.2_Missense_Mutation_p.P163S|NT5C1B_uc002rdb.1_5'UTR	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	161	Pro-rich.|Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TGCAGGCTTGGGGAGGTGGATG	0.703000													4	6					0	0	0.004672	0	0
PTCD3	55037	broad.mit.edu	37	2	86344203	86344203	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:86344203C>T	uc002sqw.2	+	6	401	c.335C>T	c.(334-336)TCC>TTC	p.S112F	PTCD3_uc010ytc.1_RNA	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	112						mitochondrion	protein binding			ovary(1)	1						GCAAAGAAATCCGGGGAGAAT	0.328000													4	12					0	0	0.009096	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95472169	95472169	+	RNA	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:95472169C>T	uc010fhp.2	-	16		c.2548G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TCTGCATTTCCAAATACATTT	0.264000													10	27					0	0	0.006214	0	0
POLR2D	5433	broad.mit.edu	37	2	128608249	128608250	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:128608249_128608250GG>AA	uc002tpj.2	-	3	319_320	c.264_265CC>TT	c.(262-267)CTCCAG>CTTTAG	p.Q89*	POLR2D_uc002tpk.2_Intron	NM_004805	NP_004796	O15514	RPB4_HUMAN	DNA directed RNA polymerase II polypeptide D	89					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA-directed RNA polymerase activity|nucleotide binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0675)		AGCTTTTTCTGGAGtagcaagc	0.248000													27	29					0	0	0.004672	0	0
GPR39	2863	broad.mit.edu	37	2	133175121	133175121	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:133175121C>T	uc002ttl.2	+	1	975	c.506C>T	c.(505-507)CCC>CTC	p.P169L		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	169	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						GTGGCACTGCCCTTGCTGTTT	0.637000													14	20					0	0	0.016723	0	0
ACMSD	130013	broad.mit.edu	37	2	135616917	135616917	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:135616917G>A	uc002ttz.2	+	3	256	c.189G>A	c.(187-189)ATG>ATA	p.M63I	ACMSD_uc002tua.2_Nonsense_Mutation_p.W22*	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	63					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		TTAGAGAAATGGACCAAAAAG	0.423000													7	44					0	0	0.006214	0	0
ACVR1	90	broad.mit.edu	37	2	158634711	158634711	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:158634711G>A	uc002tzm.3	-	6	814	c.475C>T	c.(475-477)CCC>TCC	p.P159S	ACVR1_uc002tzn.3_Missense_Mutation_p.P159S|ACVR1_uc010fog.2_Missense_Mutation_p.P159S	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	159	Cytoplasmic (Potential).				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	ACGTCTCGGGGATTGAGGCGT	0.493000													20	29					0	0	0.018920	0	0
MYO3B	140469	broad.mit.edu	37	2	171055894	171055894	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:171055894C>T	uc002ufy.2	+	2	322	c.179C>T	c.(178-180)CCA>CTA	p.P60L	MYO3B_uc002ufv.2_Missense_Mutation_p.P47L|MYO3B_uc010fqb.1_Missense_Mutation_p.P47L|MYO3B_uc002ufz.2_Missense_Mutation_p.P60L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.P47L	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	60	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						ATTCTGGATCCAGTCAGTGTA	0.368000													7	4					0	0	0.029380	0	0
DNAH7	56171	broad.mit.edu	37	2	196729224	196729224	+	Silent	SNP	C	T	T	rs150035002		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:196729224C>T	uc002utj.3	-	41	7256	c.7155G>A	c.(7153-7155)AGG>AGA	p.R2385R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2385	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.R2385R(1)		skin(10)|ovary(2)	12						CCGCACATTTCCTTAAGATCA	0.388000													30	27					0	0	0.037714	0	0
CHRNG	1146	broad.mit.edu	37	2	233409127	233409127	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:233409127G>A	uc002vsx.1	+	10	1107	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L	CHRNG_uc010fye.1_Silent_p.L310L	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	362	Cytoplasmic (Potential).				muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		TTCGCCCGCTGGCCCCGGCAG	0.652000													32	81					0	0	0.054565	0	0
USP40	55230	broad.mit.edu	37	2	234434202	234434202	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:234434202C>T	uc010zmr.1	-	13	1765	c.1765G>A	c.(1765-1767)GAA>AAA	p.E589K	USP40_uc010zmt.1_Missense_Mutation_p.E233K	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	577					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		TCCCAAAATTCTAACAGCTGA	0.368000													28	18					0	0	0.034045	0	0
MYEOV2	150678	broad.mit.edu	37	2	241075674	241075674	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:241075674G>A	uc010zof.1	-	1	74	c.28C>T	c.(28-30)CCC>TCC	p.P10S	MYEOV2_uc002vyu.1_Missense_Mutation_p.P31S	NM_001163424	NP_001156896	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 2	10											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		GCGCCCTCGGGGAACATCTCG	0.736000													4	8					0	0	0.009096	0	0
ATG4B	23192	broad.mit.edu	37	2	242598521	242598521	+	Splice_Site	SNP	A	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr2:242598521A>T	uc002wbv.2	+	7	562	c.459_splice	c.e7-2	p.K153_splice	ATG4B_uc002wbu.2_Splice_Site_p.K79_splice|ATG4B_uc002wbw.2_Splice_Site_p.K153_splice|ATG4B_uc010zox.1_Splice_Site_p.K139_splice|ATG4B_uc010zoy.1_Splice_Site_p.K79_splice|ATG4B_uc010fzp.2_Splice_Site_p.K153_splice|ATG4B_uc010zoz.1_Splice_Site_p.K79_splice	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a						autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		TACTCTCTGTAGGAAGCTTGC	0.478000													4	17					0	0	0.009096	0	0
C20orf54	113278	broad.mit.edu	37	20	744419	744419	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr20:744419G>A	uc002wed.3	-	3	1135	c.796C>T	c.(796-798)CGG>TGG	p.R266W	C20orf54_uc002wee.2_Missense_Mutation_p.R266W	NM_033409	NP_212134	Q9NQ40	RFT2_HUMAN	hypothetical protein LOC113278 precursor	266					sensory perception of sound	integral to plasma membrane	riboflavin transporter activity			ovary(2)	2						TCCCGCGGCCGGATGGAGTGG	0.647000													22	29					0	0	0.014323	0	0
TGM6	343641	broad.mit.edu	37	20	2411160	2411160	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr20:2411160C>T	uc002wfy.1	+	11	1808	c.1747C>T	c.(1747-1749)CTG>TTG	p.L583L	TGM6_uc010gal.1_Silent_p.L583L	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	583					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CAAGAAGATCCTGTTGGCTGC	0.473000													23	23					0	0	0.012319	0	0
C20orf30	29058	broad.mit.edu	37	20	5086941	5086941	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr20:5086941G>A	uc002wll.2	-	4	581	c.115C>T	c.(115-117)CCT>TCT	p.P39S	C20orf30_uc010gbi.2_Missense_Mutation_p.P39S|C20orf30_uc002wlk.2_Missense_Mutation_p.P102S|C20orf30_uc002wlm.2_Missense_Mutation_p.P39S|C20orf30_uc002wln.2_Missense_Mutation_p.P39S|C20orf30_uc002wlo.2_Intron	NM_001009924	NP_001009924	Q96A57	CT030_HUMAN	hypothetical protein LOC29058 isoform 2	39						integral to membrane					0						GGGATCTTAGGAGGGGTTTTC	0.388000													18	15					0	0	0.049695	0	0
GRIK1	2897	broad.mit.edu	37	21	30927444	30927444	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr21:30927444G>T	uc002yno.1	-	16	3000	c.2536C>A	c.(2536-2538)CTG>ATG	p.L846M	GRIK1_uc002ynn.2_Missense_Mutation_p.L831M|GRIK1_uc011acs.1_Missense_Mutation_p.L846M|GRIK1_uc011act.1_Missense_Mutation_p.L707M	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	846	Helical; (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	GAAAGGACCAGTCCGGCAGCC	0.463000													10	71					7.48243e-07	7.76103e-07	0.006214	1	0
SFRS15	57466	broad.mit.edu	37	21	33064136	33064136	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr21:33064136G>A	uc002ypd.2	-	14	2148	c.1722C>T	c.(1720-1722)TCC>TCT	p.S574S	SFRS15_uc002ype.2_Silent_p.S574S|SFRS15_uc010glu.2_Silent_p.S559S|SFRS15_uc002ypf.1_Silent_p.S248S	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	574	RRM.					nucleus	nucleotide binding|RNA binding				0						GTACCTTTATGGATTTCTGGT	0.373000													14	38					0	0	0.024245	0	0
HLCS	3141	broad.mit.edu	37	21	38269242	38269242	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr21:38269242G>A	uc010gnb.2	-	6	2570	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	HLCS_uc002yvs.2_Missense_Mutation_p.R457C	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	457					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	AGATTTTGGCGATAGATCTCT	0.468000													10	35					0	0	0.006214	0	0
DSCAM	1826	broad.mit.edu	37	21	42080524	42080524	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr21:42080524G>A	uc002yyq.1	-	2	669	c.217C>T	c.(217-219)CGC>TGC	p.R73C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	73	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGGACGTGGCGGATCCCGGGG	0.552000													15	60					0	0	0.020292	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50660946	50660946	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr22:50660946G>A	uc003bkb.1	-	14	2858	c.2346C>T	c.(2344-2346)ATC>ATT	p.I782I	TUBGCP6_uc003bka.1_5'Flank|TUBGCP6_uc010har.1_Silent_p.I774I|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'UTR	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	782					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGTGCCTCTGGATTCTCCACA	0.562000													13	23					0	0	0.013537	0	0
ARPP21	10777	broad.mit.edu	37	3	35758848	35758848	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:35758848C>T	uc003cgb.2	+	13	1258	c.994C>T	c.(994-996)CGG>TGG	p.R332W	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Missense_Mutation_p.R298W|ARPP21_uc003cgf.2_Missense_Mutation_p.R133W	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	332						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ACAGCTCTTTCGGTTGGTATG	0.303000													14	22					0	0	0.020292	0	0
DCLK3	85443	broad.mit.edu	37	3	36759615	36759615	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:36759615G>A	uc003cgi.2	-	4	2130	c.1639C>T	c.(1639-1641)CTG>TTG	p.L547L		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	547	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						AAGCCACACAGCAGGATATAG	0.577000													39	52					0	0	0.039052	0	0
TRANK1	9881	broad.mit.edu	37	3	36874965	36874965	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:36874965C>T	uc003cgj.2	-	12	4629	c.4327G>A	c.(4327-4329)GGG>AGG	p.G1443R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1993					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGGATTACCCCTTGCAGGAAG	0.507000													3	16					0	0	0.004672	0	0
DNAH1	25981	broad.mit.edu	37	3	52422547	52422547	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:52422547C>T	uc011bef.1	+	58	9546	c.9285C>T	c.(9283-9285)TAC>TAT	p.Y3095Y	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3095	Potential.|Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGGCTAAGTACCGGGAATGCA	0.607000													6	3					0	0	0.021553	0	0
EPHA6	285220	broad.mit.edu	37	3	97251304	97251304	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:97251304G>A	uc010how.1	+	11	2346	c.2303G>A	c.(2302-2304)AGA>AAA	p.R768K	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.R134K|EPHA6_uc003drs.3_Missense_Mutation_p.R160K|EPHA6_uc003drr.3_Missense_Mutation_p.R160K|EPHA6_uc003drt.2_Missense_Mutation_p.R160K|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	673	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GATCGGCAAAGAAGAGATTTT	0.438000													11	29					0	0	0.008291	0	0
PHLDB2	90102	broad.mit.edu	37	3	111659439	111659439	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:111659439G>C	uc010hqa.2	+	8	2755	c.2344G>C	c.(2344-2346)GAG>CAG	p.E782Q	PHLDB2_uc003dyc.2_Missense_Mutation_p.E766Q|PHLDB2_uc003dyd.2_Missense_Mutation_p.E739Q|PHLDB2_uc003dyg.2_Missense_Mutation_p.E782Q|PHLDB2_uc003dyh.2_Missense_Mutation_p.E739Q|PHLDB2_uc003dyi.2_Missense_Mutation_p.E368Q	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	782	Potential.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GGCTCAGAGAGAGCAAGATCA	0.353000													6	7					0	0	0.029380	0	0
KIAA2018	205717	broad.mit.edu	37	3	113373885	113373885	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:113373885T>C	uc003eam.2	-	7	7055	c.6644A>G	c.(6643-6645)AAT>AGT	p.N2215S	KIAA2018_uc003eal.2_Missense_Mutation_p.N2159S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	2215					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GGCAGAGGAATTTGCTATTGT	0.408000													7	30					0	0	0.038147	0	0
PLA1A	51365	broad.mit.edu	37	3	119334876	119334876	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:119334876C>T	uc003ecu.2	+	6	721	c.682C>T	c.(682-684)CCC>TCC	p.P228S	PLA1A_uc003ecv.2_Missense_Mutation_p.P212S|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Missense_Mutation_p.P55S	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	228					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TATTCGGATTCCCGTTGGACA	0.522000													4	10					0	0	0.014758	0	0
GOLGB1	2804	broad.mit.edu	37	3	121417268	121417268	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:121417268A>T	uc003eei.3	-	13	2213	c.2087T>A	c.(2086-2088)CTC>CAC	p.L696H	GOLGB1_uc010hrc.2_Missense_Mutation_p.L701H|GOLGB1_uc003eej.3_Missense_Mutation_p.L662H|GOLGB1_uc011bjm.1_Missense_Mutation_p.L582H|GOLGB1_uc010hrd.1_Missense_Mutation_p.L660H	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	696	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GTTTAGCTCGAGCTCCAAAAT	0.363000													10	16					0	0	0.010729	0	0
LOC729375	729375	broad.mit.edu	37	3	129821661	129821661	+	RNA	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:129821661T>C	uc003ene.2	-	2		c.255A>G			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						GTAAAGGCCATGTAGACCTCA	0.667000													6	46					0	0	0.013537	0	0
DVL3	1857	broad.mit.edu	37	3	183884674	183884674	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr3:183884674G>A	uc003fms.2	+	11	1249	c.1109G>A	c.(1108-1110)GGC>GAC	p.G370D	DVL3_uc011bqw.1_Missense_Mutation_p.G353D|DVL3_uc003fmt.2_Missense_Mutation_p.G41D|DVL3_uc003fmu.2_Missense_Mutation_p.G202D	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	370					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			GCCATGACCGGCACCTTCCCT	0.647000													3	42					0	0	0.004672	0	0
HTT	3064	broad.mit.edu	37	4	3210517	3210518	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:3210517_3210518CC>TT	uc011bvq.1	+	47	6321_6322	c.6176_6177CC>TT	c.(6175-6177)TCC>TTT	p.S2059F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2057					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGGCTCTATTCCCTGCTGGACA	0.431000													9	11					0	0	0.004672	0	0
SH3TC1	54436	broad.mit.edu	37	4	8228944	8228944	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:8228944C>T	uc003gkv.3	+	12	1624	c.1523C>T	c.(1522-1524)GCC>GTC	p.A508V	SH3TC1_uc003gkw.3_Missense_Mutation_p.A432V|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	508							binding			large_intestine(2)|pancreas(1)	3						TTCCTGAACGCCCCTGGGTAC	0.647000													5	6					0	0	0.014758	0	0
SLC34A2	10568	broad.mit.edu	37	4	25676182	25676182	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:25676182C>T	uc003grr.2	+	12	1470	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I	SLC34A2_uc003grs.2_Silent_p.I462I|SLC34A2_uc010iev.2_Silent_p.I462I	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	463	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GCTCCAACATCGGCACCACCA	0.592000													19	64					0	0	0.043863	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648816	41648816	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:41648816C>A	uc003gvu.3	+	12	1625	c.1571C>A	c.(1570-1572)CCA>CAA	p.P524Q	LIMCH1_uc003gvv.3_Missense_Mutation_p.P524Q|LIMCH1_uc003gvw.3_Missense_Mutation_p.P524Q|LIMCH1_uc003gvx.3_Missense_Mutation_p.P512Q|LIMCH1_uc003gwe.3_Missense_Mutation_p.P524Q|LIMCH1_uc003gvy.3_Missense_Mutation_p.P353Q|LIMCH1_uc003gwa.3_Missense_Mutation_p.P365Q|LIMCH1_uc003gvz.3_Missense_Mutation_p.P909Q|LIMCH1_uc011byu.1_Missense_Mutation_p.P358Q|LIMCH1_uc003gwc.3_Missense_Mutation_p.P370Q|LIMCH1_uc003gwd.3_Missense_Mutation_p.P358Q|LIMCH1_uc011byv.1_Missense_Mutation_p.P275Q	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	524					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AGTGGGTCTCCAAGCAAAACT	0.502000													62	53					6.09941e-20	6.46404e-20	0.048971	1	0
LIMCH1	22998	broad.mit.edu	37	4	41648870	41648871	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:41648870_41648871CC>TT	uc003gvu.3	+	12	1679_1680	c.1625_1626CC>TT	c.(1624-1626)TCC>TTT	p.S542F	LIMCH1_uc003gvv.3_Missense_Mutation_p.S542F|LIMCH1_uc003gvw.3_Missense_Mutation_p.S542F|LIMCH1_uc003gvx.3_Missense_Mutation_p.S530F|LIMCH1_uc003gwe.3_Missense_Mutation_p.S542F|LIMCH1_uc003gvy.3_Missense_Mutation_p.S371F|LIMCH1_uc003gwa.3_Missense_Mutation_p.S383F|LIMCH1_uc003gvz.3_Missense_Mutation_p.S927F|LIMCH1_uc011byu.1_Missense_Mutation_p.S376F|LIMCH1_uc003gwc.3_Missense_Mutation_p.S388F|LIMCH1_uc003gwd.3_Missense_Mutation_p.S376F|LIMCH1_uc011byv.1_Missense_Mutation_p.S293F	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	542					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AAGCCTTACTCCCAGCCCAAAA	0.490000													36	45					0	0	0.004672	0	0
BEND4	389206	broad.mit.edu	37	4	42145778	42145778	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:42145778G>C	uc003gwn.2	-	3	1301	c.721C>G	c.(721-723)CAA>GAA	p.Q241E	BEND4_uc003gwm.2_Missense_Mutation_p.Q241E|BEND4_uc011byy.1_Missense_Mutation_p.Q241E	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	241											0						GCAGAAGTTTGTTGTTTCCTT	0.453000													10	15					0	0	0.008291	0	0
NDST4	64579	broad.mit.edu	37	4	115767040	115767040	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:115767040G>A	uc003ibu.2	-	10	2733	c.2054C>T	c.(2053-2055)CCC>CTC	p.P685L	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	685	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CTTGGCTTTGGGGACAAGAGA	0.438000													30	39					0	0	0.041601	0	0
NEK1	4750	broad.mit.edu	37	4	170327855	170327855	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr4:170327855C>T	uc003isb.1	-	30	3674	c.3182G>A	c.(3181-3183)AGA>AAA	p.R1061K	NEK1_uc003isc.1_Missense_Mutation_p.R1017K|NEK1_uc003isd.1_Missense_Mutation_p.R1089K|NEK1_uc003ise.1_Missense_Mutation_p.R1045K|NEK1_uc003isf.1_Missense_Mutation_p.R992K	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	1061					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		CATAAGGGTTCTGAACAGCTT	0.318000													23	29					0	0	0.034045	0	0
ANKH	56172	broad.mit.edu	37	5	14758613	14758614	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:14758613_14758614GG>AA	uc003jfm.3	-	3	738_739	c.407_408CC>TT	c.(406-408)GCC>GTT	p.A136V		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	136	Helical; (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						AAGGAAAGGCGGCGAGGTACAG	0.366000													9	20					0	0	0.004672	0	0
CDH18	1016	broad.mit.edu	37	5	19473754	19473754	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:19473754G>A	uc003jgc.2	-	12	2331	c.1954C>T	c.(1954-1956)CGG>TGG	p.R652W	CDH18_uc003jgd.2_Missense_Mutation_p.R652W|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	652	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					ACGTTCTCCCGTACATCCTCT	0.478000													40	145					0	0	0.033182	0	0
CDH10	1008	broad.mit.edu	37	5	24491860	24491860	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:24491860C>T	uc003jgr.1	-	11	2033	c.1701G>A	c.(1699-1701)GTG>GTA	p.V567V	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	567	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TGTCTGATATCACCACAGGCA	0.398000										HNSCC(23;0.051)			23	17					0	0	0.016522	0	0
SPEF2	79925	broad.mit.edu	37	5	35793359	35793359	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:35793359G>T	uc003jjo.2	+	32	4764	c.4653G>T	c.(4651-4653)GAG>GAT	p.E1551D	SPEF2_uc003jjp.1_Missense_Mutation_p.E1037D|SPEF2_uc003jjr.2_Missense_Mutation_p.E606D	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1551					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCCCTTGGAGGAGGAGCTCC	0.478000													16	65					1.15088e-07	1.20011e-07	0.028581	1	0
C5orf42	65250	broad.mit.edu	37	5	37196031	37196031	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:37196031C>T	uc011cpa.1	-	21	3971	c.3740G>A	c.(3739-3741)GGA>GAA	p.G1247E	C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.G322E|C5orf42_uc011cpb.1_Missense_Mutation_p.G128E	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1247										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TGCGATACCTCCTTTACAGTA	0.378000													28	30					0	0	0.030593	0	0
NLN	57486	broad.mit.edu	37	5	65058797	65058797	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:65058797C>T	uc003juf.2	+	3	428	c.312C>T	c.(310-312)ACC>ACT	p.T104T	NLN_uc003jue.2_Silent_p.T104T	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor	104					proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		TGGAAAGGACCATGCTAGACT	0.413000													16	35					0	0	0.028581	0	0
RAD17	5884	broad.mit.edu	37	5	68667346	68667346	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:68667346T>C	uc003jwo.2	+	1	66	c.4T>C	c.(4-6)TCA>CCA	p.S2P	RAD17_uc003jwg.2_Intron|RAD17_uc003jwh.2_Intron|RAD17_uc003jwi.2_5'UTR|RAD17_uc003jwj.2_Intron|RAD17_uc003jwk.2_Intron|RAD17_uc003jwl.2_Intron|RAD17_uc003jwm.2_Intron|RAD17_uc003jwn.2_Intron|TAF9_uc003jwa.2_5'Flank|TAF9_uc003jwb.2_5'Flank|TAF9_uc003jwd.1_5'Flank|TAF9_uc003jwe.1_5'Flank|TAF9_uc003jwf.1_5'Flank	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	2					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		GTTTATAATGTCAAAAACTTT	0.353000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					20	18					0	0	0.016522	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101795412	101795412	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:101795412G>A	uc003knn.2	-	5	1141	c.969C>T	c.(967-969)GTC>GTT	p.V323V	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Silent_p.V323V|SLCO6A1_uc003knq.2_Silent_p.V261V	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	323	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		ACCATGCAACGACAGCGGCAA	0.338000													21	57					0	0	0.012319	0	0
DMXL1	1657	broad.mit.edu	37	5	118503322	118503322	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:118503322A>G	uc003ksd.2	+	23	5342	c.5161A>G	c.(5161-5163)ATT>GTT	p.I1721V	DMXL1_uc010jcl.1_Missense_Mutation_p.I1721V	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1721										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		ATTGAATGACATTCAGTTGGC	0.289000													8	8					0	0	0.038147	0	0
FBN2	2201	broad.mit.edu	37	5	127700391	127700391	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:127700391T>C	uc003kuu.2	-	18	2769	c.2330A>G	c.(2329-2331)GAT>GGT	p.D777G	FBN2_uc003kuv.2_Missense_Mutation_p.D744G	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	777	EGF-like 11; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGCACATATATCAGGATCCAA	0.358000													9	22					0	0	0.047766	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559978	140559978	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:140559978C>T	uc011dai.1	+	1	2549	c.2363C>T	c.(2362-2364)TCT>TTT	p.S788F	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	788	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAACAAAACTCTAACTTTAGG	0.368000													14	37					0	0	0.020292	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147027949	147027949	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr5:147027949C>T	uc003loq.1	-	5	1308	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	JAKMIP2_uc011dbx.1_Missense_Mutation_p.R267Q|JAKMIP2_uc003lor.1_Missense_Mutation_p.R309Q|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.R309Q	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	309	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTTCATTTCGTTCATCTCC	0.299000													17	46					0	0	0.033300	0	0
MSH5	4439	broad.mit.edu	37	6	31715210	31715210	+	Splice_Site	SNP	G	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:31715210G>T	uc003nwv.1	+	10	891	c.812_splice	c.e10+1	p.R271_splice	MSH5_uc003nwt.1_Splice_Site_p.R288_splice|MSH5_uc003nwu.1_Splice_Site_p.R271_splice|MSH5_uc003nww.1_Splice_Site_p.R271_splice|MSH5_uc003nwx.1_Splice_Site_p.R288_splice|MSH5_uc011dof.1_Splice_Site	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c						chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding	p.?(1)		ovary(2)|breast(1)	3						AGCTGCTCAGGTGAGTGGGTC	0.473000								Direct_reversal_of_damage|MMR					133	241					2.92346e-95	3.13228e-95	0.048971	1	0
TAP2	6891	broad.mit.edu	37	6	32781551	32781551	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:32781551C>T	uc011dqf.1	-	15	2646	c.2524G>A	c.(2524-2526)GGG>AGG	p.G842R	HLA-DOB_uc003oca.2_Missense_Mutation_p.G235R	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						AAGATTAGCCCAAGTAGGAAG	0.478000													3	3					0	0	0.004672	0	0
GPR116	221395	broad.mit.edu	37	6	46849211	46849211	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:46849211G>A	uc003oyo.3	-	8	1084	c.795C>T	c.(793-795)TCC>TCT	p.S265S	GPR116_uc003oyp.3_Silent_p.S265S|GPR116_uc003oyq.3_Silent_p.S265S|GPR116_uc010jzi.1_5'Flank|GPR116_uc003oyr.2_Silent_p.S265S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	265	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CTGCTTGAAAGGAGTTGTAGT	0.353000													29	45					0	0	0.045705	0	0
RHAG	6005	broad.mit.edu	37	6	49604381	49604381	+	Missense_Mutation	SNP	C	T	T	rs141969178		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:49604381C>T	uc003ozk.3	-	1	207	c.145G>A	c.(145-147)GAG>AAG	p.E49K	RHAG_uc010jzl.2_Missense_Mutation_p.E49K|RHAG_uc010jzm.2_Missense_Mutation_p.E49K	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	49	Extracellular (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					GGATATAACTCAAAGAATATG	0.368000													38	53					0	0	0.033182	0	0
ANKRD6	22881	broad.mit.edu	37	6	90333234	90333234	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:90333234G>A	uc003pni.3	+	11	1344	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	ANKRD6_uc003pne.3_Missense_Mutation_p.D335N|ANKRD6_uc003pnf.3_Missense_Mutation_p.D300N|ANKRD6_uc011dzy.1_Missense_Mutation_p.D335N|ANKRD6_uc010kcd.2_Missense_Mutation_p.D276N|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_5'UTR|LYRM2_uc010kcf.1_Intron|ANKRD6_uc003pnj.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	335							protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		CAGAGCAAAGGATGACAGGAG	0.597000													7	6					0	0	0.038147	0	0
SIM1	6492	broad.mit.edu	37	6	100897319	100897319	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:100897319C>T	uc003pqj.3	-	5	670	c.463G>A	c.(463-465)GAG>AAG	p.E155K	SIM1_uc010kcu.2_Missense_Mutation_p.E155K	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	155					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		CGCTCGATCTCATACTCTGGG	0.592000													15	16					0	0	0.028581	0	0
GRIK2	2898	broad.mit.edu	37	6	102483315	102483315	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:102483315C>T	uc003pqp.3	+	14	2434	c.2185C>T	c.(2185-2187)CTC>TTC	p.L729F	GRIK2_uc003pqo.3_Missense_Mutation_p.L729F|GRIK2_uc010kcw.2_Missense_Mutation_p.L729F	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	729	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CCAGCGAGTCCTCACCTCTGA	0.443000													31	93					0	0	0.045705	0	0
FIG4	9896	broad.mit.edu	37	6	110088051	110088051	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:110088051A>G	uc003ptt.2	+	15	1918	c.1703A>G	c.(1702-1704)AAA>AGA	p.K568R	FIG4_uc011eau.1_Missense_Mutation_p.K291R	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	568					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		CAGCACTCCAAAGACATCATG	0.393000													14	53					0	0	0.020292	0	0
FIG4	9896	broad.mit.edu	37	6	110088053	110088053	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:110088053G>A	uc003ptt.2	+	15	1920	c.1705G>A	c.(1705-1707)GAC>AAC	p.D569N	FIG4_uc011eau.1_Missense_Mutation_p.D292N	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	569					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		GCACTCCAAAGACATCATGCA	0.388000													14	51					0	0	0.024245	0	0
GPRC6A	222545	broad.mit.edu	37	6	117127589	117127589	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:117127589G>A	uc003pxj.1	-	3	1301	c.1279C>T	c.(1279-1281)CGG>TGG	p.R427W	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Missense_Mutation_p.R427W	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	427	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CACAGATCCCGAATGGCATAA	0.458000													9	16					0	0	0.006214	0	0
LAMA2	3908	broad.mit.edu	37	6	129634041	129634041	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:129634041C>T	uc003qbn.2	+	23	3315	c.3210C>T	c.(3208-3210)TTC>TTT	p.F1070F	LAMA2_uc003qbo.2_Silent_p.F1070F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1070	Laminin EGF-like 12.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CCTTGGATTTCCAATGCAATG	0.403000													18	10					0	0	0.043863	0	0
TBP	6908	broad.mit.edu	37	6	170871052	170871052	+	Silent	SNP	G	A	A	rs112083427		TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:170871052G>A	uc003qxt.2	+	3	460	c.228G>A	c.(226-228)CAG>CAA	p.Q76Q	TBP_uc003qxu.2_Silent_p.Q76Q|TBP_uc011ehf.1_Silent_p.Q56Q|TBP_uc011ehg.1_Silent_p.Q76Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	76	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcaacagcagcagcagcagc	0.159000													5	28					0	0	0.014758	0	0
NPSR1	387129	broad.mit.edu	37	7	34698043	34698043	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:34698043G>A	uc003teg.1	+	1	147	c.19G>A	c.(19-21)GAG>AAG	p.E7K	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.E7K|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.E7K|NPSR1_uc003tei.1_Missense_Mutation_p.E7K|NPSR1_uc010kww.1_Missense_Mutation_p.E7K|NPSR1_uc011kar.1_Missense_Mutation_p.E7K	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	7	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CAACTTCACAGAGGGCAGCTT	0.582000													27	34					0	0	0.030593	0	0
MAGI2	9863	broad.mit.edu	37	7	77708388	77708388	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:77708388G>A	uc003ugx.2	-	21	3836	c.3582C>T	c.(3580-3582)ATC>ATT	p.I1194I	MAGI2_uc003ugy.2_Silent_p.I1180I|MAGI2_uc010ldx.1_Silent_p.I787I	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1194	PDZ 6.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGATTTCAATGATTTGATCTC	0.393000													76	115					0	0	0.048971	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86548562	86548562	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:86548562G>A	uc011kha.1	-	11	1649	c.1464C>T	c.(1462-1464)ATC>ATT	p.I488I	KIAA1324L_uc003uif.1_Silent_p.I248I|KIAA1324L_uc011kgz.1_Silent_p.I374I|KIAA1324L_uc003uie.2_Silent_p.I321I	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	488	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GCAAGTTTAAGATCAGGTAAT	0.363000													16	26					0	0	0.014323	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866242	131866242	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:131866242G>A	uc003vra.3	-	18	3619	c.3390C>T	c.(3388-3390)ATC>ATT	p.I1130I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1130	Extracellular (Potential).|IPT/TIG 3.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTTGTTGAGGATGAGCAGGG	0.592000													51	87					0	0	0.048971	0	0
LRGUK	136332	broad.mit.edu	37	7	133943150	133943151	+	Missense_Mutation	DNP	CC	TT	TT	rs113393042	byFrequency	TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:133943150_133943151CC>TT	uc003vrm.1	+	19	2356_2357	c.2340_2341CC>TT	c.(2338-2343)ACCCGG>ACTTGG	p.R781W		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	781							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CCGAAGAGACCCGGAAAGGTAT	0.307000													20	22					0	0	0.004672	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				33	38					0	0	0.054565	0	0
MGAM	8972	broad.mit.edu	37	7	141740561	141740561	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:141740561G>A	uc003vwy.2	+	21	2467	c.2413G>A	c.(2413-2415)GAA>AAA	p.E805K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	805	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGTCGAGATGGAACTTCCTGG	0.478000													10	23					0	0	0.006214	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163958	150163958	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:150163958G>A	uc003whj.2	+	2	502	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	58						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GGTCCTGAGAGAAAGGAAGGT	0.478000													82	64					0	0	0.048971	0	0
UBE3C	9690	broad.mit.edu	37	7	157060408	157060408	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:157060408C>T	uc010lqs.2	+	23	3523	c.3211C>T	c.(3211-3213)CTC>TTC	p.L1071F	UBE3C_uc003wni.3_Missense_Mutation_p.L434F	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	1071	HECT.				protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		AAGTAAACTTCTCTATGCGAT	0.567000													79	65					0	0	0.048971	0	0
ST18	9705	broad.mit.edu	37	8	53084721	53084721	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:53084721G>A	uc003xqz.2	-	5	856	c.700C>T	c.(700-702)CCT>TCT	p.P234S	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.P199S|ST18_uc011lds.1_Missense_Mutation_p.P139S|ST18_uc003xra.2_Missense_Mutation_p.P234S|ST18_uc003xrb.2_Missense_Mutation_p.P234S	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	234						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTATTTCAGGAACTTCCAAT	0.418000													22	35					0	0	0.012319	0	0
NKAIN3	286183	broad.mit.edu	37	8	63659653	63659653	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:63659653G>A	uc010lyq.1	+	4	568	c.436G>A	c.(436-438)GAG>AAG	p.E146K		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	146						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				CCAGTACCTGGAGGTCATCCA	0.468000													21	16					0	0	0.014323	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110376846	110376846	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:110376846G>A	uc003yne.2	+	2	248	c.144G>A	c.(142-144)AGG>AGA	p.R48R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	48	Extracellular (Potential).|IPT/TIG 1.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAGCAACAAGGCTGACTATAA	0.328000										HNSCC(38;0.096)			5	6					0	0	0.014758	0	0
CYP11B1	1584	broad.mit.edu	37	8	143956421	143956421	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:143956421G>A	uc003yxi.2	-	8	1357	c.1350C>T	c.(1348-1350)TGC>TGT	p.C450C	CYP11B1_uc010mex.2_Silent_p.C149C|CYP11B1_uc003yxh.2_Intron|CYP11B1_uc003yxj.2_Intron|CYP11B1_uc010mey.2_Silent_p.C521C	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	450		Iron (heme axial ligand) (By similarity).			aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GCCGCCCAAGGCACTGGCGCA	0.682000									Familial_Hyperaldosteronism_type_I				37	57					0	0	0.027894	0	0
PLEC	5339	broad.mit.edu	37	8	145001238	145001238	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:145001238G>A	uc003zaf.1	-	29	4433	c.4263C>T	c.(4261-4263)CTC>CTT	p.L1421L	PLEC_uc003zab.1_Silent_p.L1284L|PLEC_uc003zac.1_Silent_p.L1288L|PLEC_uc003zad.2_Silent_p.L1284L|PLEC_uc003zae.1_Silent_p.L1252L|PLEC_uc003zag.1_Silent_p.L1262L|PLEC_uc003zah.2_Silent_p.L1270L|PLEC_uc003zaj.2_Silent_p.L1311L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1421	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCACCAGCTGGAGTTCATAGT	0.627000													11	17					0	0	0.010729	0	0
INSL4	3641	broad.mit.edu	37	9	5231701	5231701	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr9:5231701G>A	uc003ziy.2	+	1	283	c.178G>A	c.(178-180)GAA>AAA	p.E60K		NM_002195	NP_002186	Q14641	INSL4_HUMAN	insulin-like 4 precursor	60					cell proliferation|cell-cell signaling|female pregnancy|multicellular organismal development|signal transduction	extracellular space|soluble fraction	hormone activity|insulin-like growth factor receptor binding				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.14)		GTGGCTGCTGGAATCTGGACG	0.522000													9	3					0	0	0.008291	0	0
FAM75A2	642265	broad.mit.edu	37	9	39887032	39887032	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr9:39887032C>G	uc004abp.2	+	3	303	c.274C>G	c.(274-276)CAG>GAG	p.Q92E		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	92						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GAGAGGCCTGCAGGAGACTTC	0.617000													2	9					0	0	0.009096	0	0
STX17	55014	broad.mit.edu	37	9	102677597	102677597	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr9:102677597C>T	uc004bal.3	+	2	212	c.76C>T	c.(76-78)CCA>TCA	p.P26S	STX17_uc004bak.2_Missense_Mutation_p.P26S|STX17_uc010msx.2_RNA|STX17_uc011lvd.1_RNA	NM_017919	NP_060389	P56962	STX17_HUMAN	syntaxin 17	26	Cytoplasmic (Potential).				intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum|integral to membrane|nucleolus	SNAP receptor activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				GATAGTAATCCCAACAGACCT	0.343000													20	5					0	0	0.043863	0	0
IKBKAP	8518	broad.mit.edu	37	9	111663953	111663953	+	Silent	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr9:111663953G>A	uc004bdm.3	-	17	2383	c.1863C>T	c.(1861-1863)GTC>GTT	p.V621V	IKBKAP_uc004bdl.2_Silent_p.V272V|IKBKAP_uc011lwc.1_Silent_p.V507V|IKBKAP_uc010mtq.2_Silent_p.V272V	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	621					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						TCAGACCAAGGACACATTCCT	0.388000													8	22					0	0	0.006214	0	0
MAGEH1	28986	broad.mit.edu	37	X	55479006	55479006	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:55479006G>C	uc004dum.2	+	1	469	c.199G>C	c.(199-201)GAA>CAA	p.E67Q		NM_014061	NP_054780	Q9H213	MAGH1_HUMAN	melanoma antigen, family H, 1 protein	67	MAGE.				apoptosis					ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CACCCCTGAAGAAGCCTCGAG	0.587000													3	31					0	0	0.004672	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962141	73962141	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:73962141C>T	uc004eby.2	-	3	2868	c.2251G>A	c.(2251-2253)GAA>AAA	p.E751K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	751					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GATTGGTTTTCCAAGAGAGGG	0.378000													45	5					0	0	0.036044	0	0
Unknown	0	broad.mit.edu	37	X	80185389	80185389	+	Silent	SNP	C	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:80185389C>T	uc004eec.1	+	1	462	c.288C>T	c.(286-288)TTC>TTT	p.F96F						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		ACATGGTTTTCGACATTGTTG	0.498000													49	6					0	0	0.048971	0	0
MCART6	401612	broad.mit.edu	37	X	103349514	103349514	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:103349514G>A	uc004elu.2	-	2	608	c.427C>T	c.(427-429)CAG>TAG	p.Q143*		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	143	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						CGACCATCCTGGAGCACATTT	0.597000													105	10					0	0	0.048971	0	0
COL4A6	1288	broad.mit.edu	37	X	107431170	107431170	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:107431170G>A	uc004enw.3	-	22	1781	c.1678C>T	c.(1678-1680)CGG>TGG	p.R560W	COL4A6_uc004env.3_Missense_Mutation_p.R559W|COL4A6_uc011msn.1_Missense_Mutation_p.R559W|COL4A6_uc010npk.2_Missense_Mutation_p.R559W	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	560	Triple-helical region.|Cell attachment site (Potential).				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GAATCACCCCGATCTCCTGGC	0.537000									Alport_syndrome_with_Diffuse_Leiomyomatosis				99	12					0	0	0.048971	0	0
GPR112	139378	broad.mit.edu	37	X	135494509	135494509	+	Silent	SNP	A	C	C			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chrX:135494509A>C	uc004ezu.1	+	24	9312	c.9021A>C	c.(9019-9021)CGA>CGC	p.R3007R	GPR112_uc010nsb.1_Silent_p.R2802R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	3007	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GGTGGTTGCGATTGGATAACT	0.403000													36	2					0	0	0.017118	0	0
MST1P2	11209	broad.mit.edu	37	1	16975913	16975918	+	RNA	DEL	CCTGTT	-	-			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr1:16975913_16975918delCCTGTT	uc010och.1	+	11		c.1935_1940delCCTGTT			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTTGGGCACCCTGTTCCAGAACCCA	0.578													3	6	---	---	---	---					
TM9SF3	56889	broad.mit.edu	37	10	98287894	98287895	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr10:98287894_98287895insAT	uc001kmm.3	-	12	1651_1652	c.1434_1435insAT	c.(1432-1437)TATTATfs	p.Y478fs	TM9SF3_uc010qot.1_Frame_Shift_Ins_p.Y478fs	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	478_479						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		CCATAGACATAATAGATCTTAT	0.376													14	30	---	---	---	---					
TRIM15	89870	broad.mit.edu	37	6	30139833	30139833	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr6:30139833delG	uc010jrx.2	+	7	1584	c.1105delG	c.(1105-1107)GGGfs	p.G369fs		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	369	B30.2/SPRY.				mesodermal cell fate determination	intracellular	zinc ion binding				0						GGGGGTGGCCGGGGAGGGGGT	0.731													3	5	---	---	---	---					
POM121	9883	broad.mit.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	CTC	CTC	rs148686669	byFrequency	TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr7:72413723_72413724insCTC	uc003twk.2	+	11	3191_3192	c.3191_3192insCTC	c.(3190-3192)TTC>TTCTCC	p.1064_1065insS	POM121_uc003twj.2_In_Frame_Ins_p.799_800insS|POM121_uc010lam.1_In_Frame_Ins_p.799_800insS	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1064_1065	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACTGCTGTCTTCTTCGGTGCAG	0.663													7	86	---	---	---	---					
ZNF395	55893	broad.mit.edu	37	8	28209226	28209228	+	In_Frame_Del	DEL	GCA	-	-	rs142343457	byFrequency	TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr8:28209226_28209228delGCA	uc003xgq.2	-	7	1105_1107	c.1017_1019delTGC	c.(1015-1020)GCTGCC>GCC	p.339_340AA>A	ZNF395_uc003xgt.2_In_Frame_Del_p.339_340AA>A|ZNF395_uc003xgr.2_In_Frame_Del_p.339_340AA>A|ZNF395_uc003xgs.2_In_Frame_Del_p.339_340AA>A	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	339_340					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GGTGCCTgcggcagcagcagcag	0.507													7	126	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90744839	90744840	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DA-A1I2-06A-21D-A19A-08	TCGA-DA-A1I2-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d432e99a-67fb-4609-b90f-99438eee7cae	33941005-40a5-45da-a497-bd3fcfbbec30	g.chr9:90744839_90744840insT	uc011lti.1	-	4	3141_3142	c.3112_3113insA	c.(3112-3114)ACAfs	p.T1038fs	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		GTTTTTTACTGTTTTTTGGCTC	0.431													23	19	---	---	---	---					
