Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf93	127281	broad.mit.edu	37	1	2520471	2520471	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:2520471C>T	uc001aju.1	+	6	647	c.571C>T	c.(571-573)CCG>TCG	p.P191S	C1orf93_uc001ajw.1_Missense_Mutation_p.P180L|C1orf93_uc001ajv.1_Missense_Mutation_p.P209S|C1orf93_uc010nzd.1_Missense_Mutation_p.P187S|C1orf93_uc010nze.1_Missense_Mutation_p.P155S|C1orf93_uc010nzf.1_Missense_Mutation_p.P154S|C1orf93_uc001ajx.1_Silent_p.T63T	NM_152371	NP_689584	Q8TBF2	PGFS_HUMAN	hypothetical protein LOC127281	191					prostaglandin biosynthetic process	cytosol	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor			central_nervous_system(1)	1	all_cancers(77;0.000167)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.97e-16)|all_lung(118;3.05e-07)|Lung NSC(185;2.8e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Lung SC(97;0.109)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		Epithelial(90;4.76e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.19e-23)|GBM - Glioblastoma multiforme(42;1.13e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.00205)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		TGCCAGCGACCCGCCTCAGGT	0.677													18	36					0	0	0.002299	0	0
NOL9	79707	broad.mit.edu	37	1	6589208	6589208	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:6589208G>A	uc001ans.2	-	10	1690	c.1671C>T	c.(1669-1671)CTC>CTT	p.L557L	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	557					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		GGGTAATCCGGAGTGCGACTG	0.443													15	17					0	0	0.004990	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7998817	7998817	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:7998817C>T	uc001aot.2	-	3	300	c.172G>A	c.(172-174)GGA>AGA	p.G58R		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	58	TNFR-Cys 2.|Extracellular (Potential).				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GTCCTTTGTCCACCTGCGCTG	0.413													62	103					0	0	0.003610	0	0
CASZ1	54897	broad.mit.edu	37	1	10708136	10708136	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:10708136G>A	uc001aro.2	-	16	3539	c.3219C>T	c.(3217-3219)GCC>GCT	p.A1073A	CASZ1_uc001arp.1_Silent_p.A1073A	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1073					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CGGCGGCCGAGGCCGGAAAGG	0.667													4	1					0	0	0.001168	0	0
VPS13D	55187	broad.mit.edu	37	1	12321991	12321991	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:12321991C>T	uc001atv.2	+	13	1589	c.1448C>T	c.(1447-1449)GCC>GTC	p.A483V	VPS13D_uc001atw.2_Missense_Mutation_p.A483V	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	483					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ACTGCAGATGCCTCGTGTATG	0.438													36	57					0	0	0.003610	0	0
AADACL4	343066	broad.mit.edu	37	1	12704574	12704574	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:12704574C>T	uc001auf.2	+	1	9	c.9C>T	c.(7-9)GTC>GTT	p.V3V		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	3	Cytoplasmic (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		ACATGGCTGTCCCCTGGCTAG	0.567													40	48					0	0	0.011902	0	0
CASP9	842	broad.mit.edu	37	1	15821782	15821782	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:15821782T>C	uc001awn.2	-	7	1129	c.1034A>G	c.(1033-1035)TAC>TGC	p.Y345C	CASP9_uc001awm.1_Missense_Mutation_p.Y345C|CASP9_uc001awo.2_Missense_Mutation_p.Y195C|CASP9_uc001awp.2_Missense_Mutation_p.Y189C|CASP9_uc009voi.2_Missense_Mutation_p.Y189C|CASP9_uc010obm.1_Missense_Mutation_p.Y262C|CASP9_uc001awq.2_Missense_Mutation_p.Y262C	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	345					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		GAAAGTAGAGTAGGACACAAA	0.557													2	11					0	0	0.004672	0	0
ZBTB17	7709	broad.mit.edu	37	1	16270310	16270310	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:16270310G>A	uc001axl.3	-	10	1691	c.1452C>T	c.(1450-1452)ACC>ACT	p.T484T	ZBTB17_uc010obq.1_Silent_p.T401T|ZBTB17_uc010obr.1_Silent_p.T484T|ZBTB17_uc010obs.1_Silent_p.T408T	NM_003443	NP_003434	Q13105	ZBT17_HUMAN	zinc finger and BTB domain containing 17	484	C2H2-type 7.				negative regulation of cell cycle	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|Colorectal(212;4.12e-07)|COAD - Colon adenocarcinoma(227;2.43e-05)|BRCA - Breast invasive adenocarcinoma(304;9.97e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		TACCTGAGGTGGTGAACTGCT	0.677													6	13					0	0	0.001168	0	0
NBPF1	55672	broad.mit.edu	37	1	16902895	16902895	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:16902895G>A	uc009vos.1	-	19	2874	c.1986C>T	c.(1984-1986)TCC>TCT	p.S662S	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Silent_p.S120S|NBPF1_uc010oce.1_Silent_p.S391S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	662	Potential.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCAATGAGCAGGAGGCATCTC	0.552													58	361					0	0	0.003610	0	0
MFAP2	4237	broad.mit.edu	37	1	17303271	17303271	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:17303271G>A	uc001azw.2	-	5	306	c.173C>T	c.(172-174)TCC>TTC	p.S58F	MFAP2_uc001azx.2_Missense_Mutation_p.S57F|MFAP2_uc001azy.2_Missense_Mutation_p.S58F|MFAP2_uc010ocl.1_Missense_Mutation_p.S57F	NM_002403	NP_002394	P55001	MFAP2_HUMAN	microfibrillar-associated protein 2 isoform a	58						microfibril					0		Colorectal(325;3.46e-05)|Breast(348;0.000118)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000538)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|COAD - Colon adenocarcinoma(227;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;3.04e-05)|Kidney(64;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00544)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		ctgTTCCTCGGAGGGCCGAGG	0.373													29	34					0	0	0.010818	0	0
UBR4	23352	broad.mit.edu	37	1	19441987	19441987	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:19441987C>A	uc001bbi.2	-	74	10972	c.10968G>T	c.(10966-10968)GAG>GAT	p.E3656D	UBR4_uc001bbj.1_Missense_Mutation_p.E71D	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3656					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		ACTGCAGGGTCTCTGTGGAGG	0.532													55	86					2.84144e-21	3.08963e-21	0.003610	1	0
MUL1	79594	broad.mit.edu	37	1	20829787	20829787	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:20829787G>A	uc001bdi.3	-	2	293	c.136C>T	c.(136-138)CAT>TAT	p.H46Y		NM_024544	NP_078820	Q969V5	MUL1_HUMAN	mitochondrial ubiquitin ligase activator of NFKB	46	Mitochondrial intermembrane (Potential).				activation of caspase activity|activation of JUN kinase activity|induction of apoptosis|mitochondrial fission|mitochondrion localization|negative regulation of cell growth|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to mitochondrial outer membrane|nucleus|peroxisome	identical protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00748)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000137)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		TCACCCAAATGAACTTTTTTA	0.313													9	15					0	0	0.004482	0	0
EIF4G3	8672	broad.mit.edu	37	1	21226294	21226294	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:21226294G>A	uc001bec.2	-	11	1983	c.1727C>T	c.(1726-1728)CCA>CTA	p.P576L	EIF4G3_uc010odi.1_Missense_Mutation_p.P180L|EIF4G3_uc010odj.1_Missense_Mutation_p.P575L|EIF4G3_uc009vpz.2_Missense_Mutation_p.P296L|EIF4G3_uc001bed.2_Missense_Mutation_p.P576L|EIF4G3_uc001bef.2_Missense_Mutation_p.P575L|EIF4G3_uc001bee.2_Missense_Mutation_p.P582L	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	576					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		ATTACGTACTGGCTCAGCTTC	0.428													101	205					0	0	0.003610	0	0
EIF4G3	8672	broad.mit.edu	37	1	21329264	21329264	+	Translation_Start_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:21329264G>A	uc001bec.2	-	3	228	c.-28C>T	c.(-30--26)CACGC>CATGC		EIF4G3_uc010odj.1_Translation_Start_Site|EIF4G3_uc009vpz.2_Translation_Start_Site|EIF4G3_uc001bed.2_Translation_Start_Site|EIF4G3_uc001bef.2_Translation_Start_Site|EIF4G3_uc001bee.2_Translation_Start_Site|EIF4G3_uc001beg.2_Translation_Start_Site|EIF4G3_uc010odk.1_Translation_Start_Site|EIF4G3_uc001beh.2_Translation_Start_Site	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4						interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		GTATACCAGCGTGGTTGGACC	0.418													46	78					0	0	0.003610	0	0
HSPG2	3339	broad.mit.edu	37	1	22176663	22176663	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:22176663G>A	uc001bfj.2	-	57	7357	c.7317C>T	c.(7315-7317)GTC>GTT	p.V2439V	HSPG2_uc009vqd.2_Silent_p.V2440V	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2439	Ig-like C2-type 10.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	ACTCGATCCGGACCGTGGGGG	0.632													28	56					0	0	0.007291	0	0
HSPG2	3339	broad.mit.edu	37	1	22186462	22186462	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:22186462G>A	uc001bfj.2	-	41	5088	c.5048C>T	c.(5047-5049)CCT>CTT	p.P1683L	HSPG2_uc009vqd.2_Missense_Mutation_p.P1684L	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1683	Ig-like C2-type 2.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GCTTCGAGCAGGATGGACCTC	0.607													9	22					0	0	0.008291	0	0
TCEB3	6924	broad.mit.edu	37	1	24080687	24080687	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:24080687C>T	uc001bho.2	+	6	1773	c.1713C>T	c.(1711-1713)CTC>CTT	p.L571L		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	571	Activation domain (By similarity).				positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		GTGCCTATCTCCCTAAAATGA	0.453													36	52					0	0	0.007835	0	0
MYOM3	127294	broad.mit.edu	37	1	24392418	24392418	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:24392418T>C	uc001bin.3	-	29	3660	c.3497A>G	c.(3496-3498)GAC>GGC	p.D1166G	MYOM3_uc001bil.3_Missense_Mutation_p.D59G|MYOM3_uc001bim.3_Missense_Mutation_p.D823G|MYOM3_uc001bio.2_Missense_Mutation_p.D1166G	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1166	Ig-like C2-type 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CGTCTCTGGGTCATACTGACC	0.562													3	179					0	0	0.009096	0	0
MYOM3	127294	broad.mit.edu	37	1	24402693	24402693	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:24402693T>C	uc001bin.3	-	21	2820	c.2657A>G	c.(2656-2658)CAA>CGA	p.Q886R	MYOM3_uc001bim.3_Missense_Mutation_p.Q543R|MYOM3_uc001bio.2_Missense_Mutation_p.Q886R	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	886	Fibronectin type-III 5.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CATGGACGGTTGCCCCAGACC	0.627													28	58					0	0	0.002836	0	0
NIPAL3	57185	broad.mit.edu	37	1	24768661	24768661	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:24768661C>T	uc001bjh.2	+	4	686	c.279C>T	c.(277-279)TCC>TCT	p.S93S	NIPAL3_uc010oek.1_Silent_p.S93S|NIPAL3_uc001bjg.2_Silent_p.S93S|NIPAL3_uc009vrc.2_Silent_p.S11S	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	93	Helical; (Potential).					integral to membrane					0						TGTTCGCCTCCTACGCCTTCG	0.637													43	71					0	0	0.013114	0	0
MAN1C1	57134	broad.mit.edu	37	1	26104797	26104797	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:26104797G>A	uc001bkm.2	+	9	1789	c.1459G>A	c.(1459-1461)GAG>AAG	p.E487K	MAN1C1_uc009vry.1_Missense_Mutation_p.E307K|MAN1C1_uc001bkn.2_5'Flank	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	487	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		GACGTGTCACGAGTCATACGC	0.607													11	17					0	0	0.002450	0	0
ARID1A	8289	broad.mit.edu	37	1	27100165	27100165	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:27100165C>T	uc001bmv.1	+	16	4334	c.3961C>T	c.(3961-3963)CCT>TCT	p.P1321S	ARID1A_uc001bmt.1_Missense_Mutation_p.P1320S|ARID1A_uc001bmu.1_Missense_Mutation_p.P1321S|ARID1A_uc001bmw.1_Missense_Mutation_p.P938S|ARID1A_uc001bmx.1_Missense_Mutation_p.P167S|ARID1A_uc009vsm.1_5'UTR|ARID1A_uc009vsn.1_5'Flank	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1321					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GATGTATTCTCCTAGCCGCTA	0.527			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								30	51					0	0	0.010818	0	0
EYA3	2140	broad.mit.edu	37	1	28301011	28301011	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:28301011G>A	uc001bpi.1	-	18	1853	c.1688C>T	c.(1687-1689)TCC>TTC	p.S563F	EYA3_uc010ofs.1_Missense_Mutation_p.S510F|EYA3_uc010oft.1_Missense_Mutation_p.S517F	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	563					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGTGAAGGGATACTAGGTC	0.468													23	55					0	0	0.005443	0	0
MECR	51102	broad.mit.edu	37	1	29533322	29533322	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:29533322G>A	uc001brq.1	-	4	538	c.502C>T	c.(502-504)CCC>TCC	p.P168S	MECR_uc001brp.1_Missense_Mutation_p.P92S|MECR_uc001brr.1_Missense_Mutation_p.P92S|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Missense_Mutation_p.P92S|MECR_uc010ofz.1_Missense_Mutation_p.P168S	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	168					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		GCTGTGCAGGGATTGACACCC	0.602													28	41					0	0	0.003755	0	0
TINAGL1	64129	broad.mit.edu	37	1	32050548	32050549	+	Nonsense_Mutation	DNP	CC	GT	GT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:32050548_32050549CC>GT	uc001bta.2	+	7	894_895	c.768_769CC>GT	c.(766-771)CCCCAG>CCGTAG	p.Q257*	TINAGL1_uc001bsz.2_Nonsense_Mutation_p.Q112*|TINAGL1_uc010ogj.1_Nonsense_Mutation_p.Q226*|TINAGL1_uc010ogk.1_Nonsense_Mutation_p.Q257*	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1	257					endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		TCCTGTCGCCCCAGAACCTGCT	0.634													30	61					0	0	0.004672	0	0
COL16A1	1307	broad.mit.edu	37	1	32157060	32157060	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:32157060G>T	uc001btk.1	-	19	1721	c.1356C>A	c.(1354-1356)CCC>CCA	p.P452P	COL16A1_uc001btj.1_Silent_p.P281P|COL16A1_uc001btl.3_Silent_p.P452P	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	452	Triple-helical region 9 (COL9) with 3 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CAGGGAGGCCGGGGGGCCCAG	0.662													15	27					3.99206e-14	4.32124e-14	0.007413	1	0
TMEM54	113452	broad.mit.edu	37	1	33366825	33366825	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:33366825G>A	uc001bwi.1	-	1	129	c.15C>T	c.(13-15)CTC>CTT	p.L5L	TMEM54_uc001bwj.1_Silent_p.L5L|TMEM54_uc001bwk.1_Silent_p.L5L	NM_033504	NP_277039	Q969K7	TMM54_HUMAN	transmembrane protein 54	5						integral to membrane					0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GTCGCTCACCGAGGCGCAGAC	0.617													4	8					0	0	0.001168	0	0
CSMD2	114784	broad.mit.edu	37	1	34066541	34066541	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:34066541C>T	uc001bxn.1	-	45	6815	c.6786G>A	c.(6784-6786)CAG>CAA	p.Q2262Q	CSMD2_uc001bxm.1_Silent_p.Q2260Q|CSMD2_uc001bxo.1_Silent_p.Q1133Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2262	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGATGAACTCTGCACTGTTT	0.522													42	72					0	0	0.003610	0	0
CSMD2	114784	broad.mit.edu	37	1	34189893	34189893	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:34189893G>A	uc001bxn.1	-	19	2814	c.2785C>T	c.(2785-2787)CAA>TAA	p.Q929*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.Q969*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	929	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTGGAGCCTTGAATGAAGCCA	0.562													10	23					0	0	0.008291	0	0
CSMD2	114784	broad.mit.edu	37	1	34209109	34209109	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:34209109G>A	uc001bxn.1	-	14	1854	c.1825C>T	c.(1825-1827)CTG>TTG	p.L609L	CSMD2_uc001bxm.1_Silent_p.L649L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	609	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCCTGGCCAGGATGAGCCAG	0.587													24	59					0	0	0.003954	0	0
STK40	83931	broad.mit.edu	37	1	36826901	36826901	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:36826901C>T	uc001cak.1	-	3	440	c.33G>A	c.(31-33)GGG>GGA	p.G11G	STK40_uc001cal.1_Silent_p.G11G|STK40_uc001cam.1_Silent_p.G11G|STK40_uc009vva.1_Silent_p.G11G|STK40_uc001can.1_Silent_p.G11G	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	11						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				CCGACGTTTCCCCAGCTCCTC	0.502													42	77					0	0	0.011902	0	0
EPHA10	284656	broad.mit.edu	37	1	38184483	38184483	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:38184483G>A	uc009vvi.2	-	16	2848	c.2762C>T	c.(2761-2763)CCC>CTC	p.P921L	EPHA10_uc001cbt.2_RNA|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	921	Cytoplasmic (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TAGTGGGGTGGGAGGCCTGCG	0.667													6	15					0	0	0.003080	0	0
KCNQ4	9132	broad.mit.edu	37	1	41300675	41300675	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:41300675G>A	uc001cgh.1	+	12	1732	c.1650G>A	c.(1648-1650)AAG>AAA	p.K550K	KCNQ4_uc001cgi.1_Silent_p.K496K	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	550	Cytoplasmic.|A-domain (Tetramerization).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			GGAAATTCAAGGAGACACTGC	0.572													35	81					0	0	0.003271	0	0
KIAA0467	23334	broad.mit.edu	37	1	43905671	43905671	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:43905671G>A	uc001cjk.1	+	36	4927	c.4465G>A	c.(4465-4467)GAG>AAG	p.E1489K		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2388						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGCCATCATCGAGCTTCAGCT	0.547													32	51					0	0	0.004878	0	0
MAST2	23139	broad.mit.edu	37	1	46488950	46488950	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:46488950G>A	uc001cov.2	+	14	1814	c.1531G>A	c.(1531-1533)GAC>AAC	p.D511N	MAST2_uc001cow.2_Missense_Mutation_p.D511N|MAST2_uc001coy.1_Missense_Mutation_p.D185N|MAST2_uc001coz.1_Missense_Mutation_p.D396N|MAST2_uc009vya.2_Missense_Mutation_p.D433N|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	511					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					CTCTGAAGAGGACTTCGAGAC	0.547													64	91					0	0	0.003610	0	0
CYP4B1	1580	broad.mit.edu	37	1	47276522	47276522	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:47276522C>T	uc001cqm.3	+	2	307	c.223C>T	c.(223-225)CAC>TAC	p.H75Y	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Missense_Mutation_p.H75Y|CYP4B1_uc009vym.2_Missense_Mutation_p.H75Y|CYP4B1_uc010omk.1_Intron|CYP4B1_uc010oml.1_5'Flank	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	75					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GTCCTGGGCCCACCAGTTCCC	0.562													10	32					0	0	0.006214	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515705	47515705	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:47515705G>A	uc001cqt.2	+	12	1639	c.1389G>A	c.(1387-1389)GAG>GAA	p.E463E	CYP4X1_uc001cqr.2_Silent_p.E462E|CYP4X1_uc001cqs.2_Silent_p.E398E	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	463						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CCATGATTGAGTTAAAGGTAA	0.428													44	71					0	0	0.003610	0	0
CDKN2C	1031	broad.mit.edu	37	1	51439938	51439938	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:51439938A>G	uc001csf.2	+	3	1719	c.503A>G	c.(502-504)CAA>CGA	p.Q168R	CDKN2C_uc001csg.2_Missense_Mutation_p.Q168R	NM_001262	NP_001253	P42773	CDN2C_HUMAN	cyclin-dependent kinase inhibitor 2C	168					cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|protein kinase binding	p.0?(4)|p.?(1)		central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(5)|ovary(2)|thyroid(1)|lung(1)|kidney(1)	17				GBM - Glioblastoma multiforme(3;3.61e-13)|all cancers(3;0.00151)		ACAAATCTTCAATAAACGTGG	0.488			D		glioma|MM				Multiple_Endocrine_Neoplasia_type_1				17	31					0	0	0.006122	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52705059	52705059	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:52705059C>T	uc001cto.2	+	4	2142	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	ZFYVE9_uc001ctn.2_Missense_Mutation_p.S657F|ZFYVE9_uc001ctp.2_Missense_Mutation_p.S657F	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	657					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						GCTGAGATCTCCACTAGACCA	0.448													29	55					0	0	0.007291	0	0
SLC1A7	6512	broad.mit.edu	37	1	53559150	53559150	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:53559150G>A	uc001cuy.2	-	6	948	c.780C>T	c.(778-780)ATC>ATT	p.I260I	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	260	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CCACCGCCACGATCTTCATGA	0.632													6	15					0	0	0.001984	0	0
C1orf175	374977	broad.mit.edu	37	1	55119419	55119419	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:55119419G>A	uc010ooe.1	+	3	1144	c.820G>A	c.(820-822)GAA>AAA	p.E274K	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.E274K|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.E274K|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	274	Ser-rich.					integral to membrane	binding				0						AAGTTCAAAGGAAACCATGAA	0.478													28	34					0	0	0.008361	0	0
C1orf168	199920	broad.mit.edu	37	1	57221585	57221585	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:57221585G>A	uc001cym.3	-	7	1520	c.1114C>T	c.(1114-1116)CCC>TCC	p.P372S	C1orf168_uc009vzu.1_Intron|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	372										ovary(3)|skin(2)	5						TCTGGATAGGGAAAATTCTTC	0.393													13	21					0	0	0.001855	0	0
C8A	731	broad.mit.edu	37	1	57378088	57378088	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:57378088C>T	uc001cyo.2	+	10	1525	c.1393C>T	c.(1393-1395)CAC>TAC	p.H465Y		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	465	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GCAGCCTATCCACGAGGTGCT	0.572													21	40					0	0	0.002299	0	0
C8B	732	broad.mit.edu	37	1	57431619	57431619	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:57431619C>T	uc001cyp.2	-	1	70	c.3G>A	c.(1-3)ATG>ATA	p.M1I	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_5'UTR	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	1					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGGAATTCTTCATTTTCCCAA	0.542													40	38					0	0	0.007835	0	0
DAB1	1600	broad.mit.edu	37	1	57535066	57535066	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:57535066G>A	uc001cys.1	-	10	1304	c.630C>T	c.(628-630)ATC>ATT	p.I210I	DAB1_uc001cyt.1_Silent_p.I210I|DAB1_uc001cyq.1_Intron|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Intron|DAB1_uc009vzx.1_Silent_p.I210I	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	210					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CGGGATCACGGATTGGCTCGT	0.413													23	45					0	0	0.003954	0	0
C1orf87	127795	broad.mit.edu	37	1	60491080	60491080	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:60491080C>T	uc001czs.1	-	8	1212	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	374							calcium ion binding			ovary(1)|breast(1)	2						TACTTTATTTCATTTTGGTAA	0.239													20	50					0	0	0.008871	0	0
ROR1	4919	broad.mit.edu	37	1	64515362	64515362	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:64515362G>A	uc001dbj.2	+	3	563	c.164_splice	c.e3-1	p.D55_splice	ROR1_uc001dbi.3_Splice_Site_p.D55_splice	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1						transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						TGTGCTCACAGATTCTTACCT	0.552													36	56					0	0	0.006230	0	0
WDR78	79819	broad.mit.edu	37	1	67299708	67299708	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:67299708G>A	uc001dcx.2	-	12	1913	c.1857C>T	c.(1855-1857)TCC>TCT	p.S619S	WDR78_uc009waw.2_Silent_p.S365S|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	619	WD 2.									ovary(2)	2						TAACCCATTTGGAGATTCTTC	0.348													19	39					0	0	0.010504	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507374	74507374	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:74507374C>T	uc001dfy.3	-	7	1433	c.1241G>A	c.(1240-1242)GGT>GAT	p.G414D	LRRIQ3_uc001dfz.3_Splice_Site	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	414										ovary(2)	2						GAGTTTCATACCAGCTCTTTG	0.363													34	54					0	0	0.003271	0	0
GBP3	2635	broad.mit.edu	37	1	89486328	89486328	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:89486328T>A	uc001dmt.2	-	2	282	c.77A>T	c.(76-78)GAA>GTA	p.E26V	GBP3_uc010oss.1_5'UTR|GBP3_uc001dmu.2_5'UTR|GBP3_uc001dmv.2_RNA	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	26						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		TTTCAGAGCTTCTGGATTCGC	0.512													46	71					0	0	0.003610	0	0
ABCA4	24	broad.mit.edu	37	1	94466457	94466457	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:94466457G>A	uc001dqh.2	-	47	6518	c.6414C>T	c.(6412-6414)ACC>ACT	p.T2138T		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2138	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TGGCCAGCCGGGTACACAGTG	0.577													24	45					0	0	0.003954	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668540	94668540	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:94668540C>T	uc001dqj.3	-	10	1257	c.888G>A	c.(886-888)AGG>AGA	p.R296R	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Silent_p.R296R	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	296	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTCATTTTTCCTTCCAAGTA	0.294													25	60					0	0	0.003954	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94670742	94670742	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:94670742G>A	uc001dqj.3	-	7	941	c.572C>T	c.(571-573)CCT>CTT	p.P191L	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.P191L	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	191					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TAGTTCTAAAGGGGAAAAATT	0.333													8	24					0	0	0.004482	0	0
CNN3	1266	broad.mit.edu	37	1	95367748	95367748	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:95367748C>T	uc010otw.1	-	5	395	c.313G>A	c.(313-315)GAA>AAA	p.E105K	CNN3_uc010otv.1_Missense_Mutation_p.E64K|CNN3_uc001dqz.3_Missense_Mutation_p.E105K|CNN3_uc010otx.1_Intron	NM_001839	NP_001830	Q15417	CNN3_HUMAN	calponin 3	105	CH.				actomyosin structure organization|smooth muscle contraction		actin binding|calmodulin binding|tropomyosin binding|troponin C binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00948)		all cancers(265;0.0325)|Epithelial(280;0.0861)		TCATTTGCTTCGAATATGTCA	0.383													23	38					0	0	0.002299	0	0
SLC6A17	388662	broad.mit.edu	37	1	110719356	110719356	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:110719356C>T	uc009wfq.2	+	6	1320	c.859C>T	c.(859-861)CCC>TCC	p.P287S		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	287	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CATGTTCACTCCCAAGGTAAG	0.557													32	66					0	0	0.002836	0	0
C1orf103	55791	broad.mit.edu	37	1	111494808	111494808	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:111494808G>A	uc001eaa.2	-	2	954	c.698C>T	c.(697-699)TCT>TTT	p.S233F	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	233					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		ATTTACAGGAGATACATAAAT	0.398													21	43					0	0	0.002780	0	0
KCND3	3752	broad.mit.edu	37	1	112321074	112321074	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:112321074C>T	uc001ebu.1	-	6	1982	c.1502G>A	c.(1501-1503)CGA>CAA	p.R501Q	KCND3_uc001ebv.1_Intron	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	501	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGTGGAGGTTCGTACAGATAA	0.413													24	59					0	0	0.005443	0	0
PHTF1	10745	broad.mit.edu	37	1	114252914	114252914	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:114252914C>T	uc009wgp.1	-	10	1683	c.1231G>A	c.(1231-1233)GGG>AGG	p.G411R	PHTF1_uc001edn.2_Missense_Mutation_p.G411R|PHTF1_uc001edm.2_Missense_Mutation_p.G168R|PHTF1_uc001edo.1_Missense_Mutation_p.G168R	NM_006608	NP_006599	Q9UMS5	PHTF1_HUMAN	putative homeodomain transcription factor 1	411						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGTTTGGTCCCTGAGTGAAGG	0.418													14	34					0	0	0.004007	0	0
TSHB	7252	broad.mit.edu	37	1	115576077	115576077	+	Missense_Mutation	SNP	G	A	A	rs121918669		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:115576077G>A	uc001efs.1	+	2	162	c.94G>A	c.(94-96)GAA>AAA	p.E32K		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	32					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		AATGCACATCGAAAGGAGAGA	0.423													42	51					0	0	0.010771	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964868	119964868	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:119964868C>T	uc001ehs.2	+	3	1517	c.744C>T	c.(742-744)GTC>GTT	p.V248V	HSD3B2_uc001eht.2_Silent_p.V248V|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	248					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CCCCAAGTGTCCGAGGTCAAT	0.512													20	41					0	0	0.007413	0	0
HMGCS2	3158	broad.mit.edu	37	1	120307174	120307174	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:120307174C>T	uc001eid.2	-	2	231	c.180G>A	c.(178-180)GAG>GAA	p.E60E	HMGCS2_uc010oxj.1_Silent_p.E60E|HMGCS2_uc001eie.2_5'UTR	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	60					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GGAAGTAGACCTCCAGGGCCA	0.517													135	262					0	0	0.003610	0	0
NBPF10	100132406	broad.mit.edu	37	1	145323702	145323702	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:145323702C>T	uc001end.3	+	29	3799	c.3764C>T	c.(3763-3765)CCC>CTC	p.P1255L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_5'Flank	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1180											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CCACCATGCCCCAGGTAACTG	0.453													43	600					0	0	0.003610	0	0
GJA8	2703	broad.mit.edu	37	1	147381370	147381370	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:147381370G>A	uc001epu.1	+	2	1351	c.1288G>A	c.(1288-1290)GAT>AAT	p.D430N		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	430	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CAGGTCAGACGATCTAACCGT	0.493													25	49					0	0	0.004656	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150129668	150129669	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:150129668_150129669CC>TT	uc001ett.2	+	5	791_792	c.513_514CC>TT	c.(511-516)CACCTA>CATTTA	p.171_172HL>HL	PLEKHO1_uc001etr.2_5'UTR|PLEKHO1_uc001ets.2_Intron|PLEKHO1_uc001etu.2_5'UTR	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	171_172	Interaction with ATM, CKIP, IFP35 and NMI.|Interaction with capping proteins (CPs).					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAAGGGGACACCTAATGGCTGT	0.525													66	36					0	0	0.004672	0	0
TARS2	80222	broad.mit.edu	37	1	150469286	150469286	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:150469286G>A	uc001euq.2	+	9	929	c.922G>A	c.(922-924)GAA>AAA	p.E308K	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Intron|TARS2_uc009wlt.2_Intron|TARS2_uc009wls.2_Intron	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	308					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	CTGACCCCAGGAACAGGAGCT	0.522													49	56					0	0	0.003610	0	0
BNIPL	149428	broad.mit.edu	37	1	151015476	151015476	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:151015476G>T	uc001ewl.2	+	5	651	c.478G>T	c.(478-480)GAA>TAA	p.E160*	BNIPL_uc009wmi.2_Nonsense_Mutation_p.E78*|BNIPL_uc009wmj.2_RNA	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	160					apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGAGACAGCTGAAAGGCTGGG	0.517													45	157					5.34276e-22	5.8182e-22	0.003610	1	0
PI4KB	5298	broad.mit.edu	37	1	151288521	151288521	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:151288521G>A	uc001ext.2	-	2	852	c.437C>T	c.(436-438)TCA>TTA	p.S146L	PI4KB_uc001exr.2_Missense_Mutation_p.S158L|PI4KB_uc001exs.2_Missense_Mutation_p.S146L|PI4KB_uc001exu.2_Missense_Mutation_p.S146L|PI4KB_uc010pcw.1_Intron|PI4KB_uc009wmq.1_Missense_Mutation_p.S158L	NM_002651	NP_002642	Q9UBF8	PI4KB_HUMAN	catalytic phosphatidylinositol 4-kinase beta	146					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|receptor-mediated endocytosis	endosome|Golgi apparatus|mitochondrial outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum membrane	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			ovary(2)|skin(2)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATACAGGTATGAAATGGCCAT	0.507													27	110					0	0	0.009535	0	0
RPTN	126638	broad.mit.edu	37	1	152129266	152129266	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152129266C>T	uc001ezs.1	-	3	374	c.309G>A	c.(307-309)AGG>AGA	p.R103R		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	103	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						CTTCCTGCCCCCTTTCTTGCT	0.502													189	119					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152191721	152191721	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152191721C>T	uc001ezt.1	-	3	2460	c.2384G>A	c.(2383-2385)GGG>GAG	p.G795E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	795	8.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGCCAGACCCGTGTTGGCC	0.602													17	78					0	0	0.004990	0	0
FLG	2312	broad.mit.edu	37	1	152282112	152282112	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152282112G>A	uc001ezu.1	-	3	5286	c.5250C>T	c.(5248-5250)TCC>TCT	p.S1750S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1750	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCACGTGTGGACTCTTGGT	0.607									Ichthyosis				81	367					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152324979	152324979	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152324979G>A	uc001ezw.3	-	3	5356	c.5283C>T	c.(5281-5283)TCC>TCT	p.S1761S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1761	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATGAACTATGGATTCTGACT	0.498													167	216					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152328911	152328911	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152328911G>A	uc001ezw.3	-	3	1424	c.1351C>T	c.(1351-1353)CAA>TAA	p.Q451*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	451	Filaggrin 2.|Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCACAAGTTTGACCTGAGCCA	0.478													41	199					0	0	0.006999	0	0
CRNN	49860	broad.mit.edu	37	1	152383340	152383340	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152383340T>C	uc001ezx.2	-	3	292	c.218A>G	c.(217-219)GAA>GGA	p.E73G		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	73	EF-hand.|high affinity (By similarity).				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCAGGAATTCCTTGAATTC	0.537													33	142					0	0	0.009535	0	0
LCE2A	353139	broad.mit.edu	37	1	152671415	152671415	+	Missense_Mutation	SNP	C	T	T	rs112496497		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:152671415C>T	uc001faj.2	+	2	89	c.38C>T	c.(37-39)CCT>CTT	p.P13L		NM_178428	NP_848515	Q5TA79	LCE2A_HUMAN	late cornified envelope 2A	13	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCAGCCCCCTCCCAAGTGC	0.552													92	69					0	0	0.003610	0	0
SLC27A3	11000	broad.mit.edu	37	1	153749040	153749040	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:153749040G>T	uc001fcz.2	+	2	920	c.855G>T	c.(853-855)ATG>ATT	p.M285I	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	285					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TGAGAGCCATGGGGCTCCACC	0.627													44	179					1.30916e-28	1.42674e-28	0.003610	1	0
SHE	126669	broad.mit.edu	37	1	154461714	154461715	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:154461714_154461715GG>AA	uc001ffb.2	-	3	923_924	c.836_837CC>TT	c.(835-837)TCC>TTT	p.S279F	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	279										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GGAGGTCCTTGGAACTCCGTCT	0.629													23	94					0	0	0.004672	0	0
SHC1	6464	broad.mit.edu	37	1	154938947	154938947	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:154938947G>A	uc001ffv.2	-	8	1251	c.1030C>T	c.(1030-1032)CCA>TCA	p.P344S	SHC1_uc001ffu.2_5'Flank|SHC1_uc001ffz.1_Missense_Mutation_p.P115S|SHC1_uc001ffw.2_Missense_Mutation_p.P344S|SHC1_uc001ffx.2_Missense_Mutation_p.P234S|SHC1_uc001ffy.2_Missense_Mutation_p.P234S	NM_183001	NP_892113	P29353	SHC1_HUMAN	SHC-transforming protein 1 isoform 1	344	CH1.				activation of MAPK activity|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|positive regulation of DNA replication|Ras protein signal transduction|regulation of epidermal growth factor receptor activity|regulation of growth	cytosol|mitochondrial matrix|Shc-EGFR complex	epidermal growth factor receptor binding|insulin receptor binding|insulin-like growth factor receptor binding|phospholipid binding|protein binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(1)|skin(1)	2	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGGTCAGGTGGCTCTTCCTCC	0.597													5	25					0	0	0.000602	0	0
TRIM46	80128	broad.mit.edu	37	1	155154622	155154623	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:155154622_155154623CC>TT	uc001fhs.1	+	9	1966_1967	c.1883_1884CC>TT	c.(1882-1884)CCC>CTT	p.P628L	RAG1AP1_uc010pey.1_Intron|TRIM46_uc009wpe.1_RNA|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.P502L|TRIM46_uc001fhu.1_Missense_Mutation_p.P605L|TRIM46_uc009wpg.1_Missense_Mutation_p.P615L|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	628	B30.2/SPRY.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GTGATCAGCCCCAGGTCAGACC	0.639													8	33					0	0	0.004672	0	0
HCN3	57657	broad.mit.edu	37	1	155257071	155257071	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:155257071T>C	uc001fjz.1	+	7	1593	c.1585T>C	c.(1585-1587)TTC>CTC	p.F529L	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.F224L	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	529	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCTTGAGGAGTTCCCCATGAT	0.607													22	79					0	0	0.003330	0	0
NTRK1	4914	broad.mit.edu	37	1	156844179	156844179	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:156844179C>T	uc001fqh.1	+	9	1238	c.1182C>T	c.(1180-1182)TCC>TCT	p.S394S	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|NTRK1_uc001fqi.1_Intron|NTRK1_uc009wsk.1_Intron	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	394	Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CTGCAGTCTCCTTCTCGCCGG	0.602			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			77	259					0	0	0.003610	0	0
FCRL5	83416	broad.mit.edu	37	1	157497563	157497563	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:157497563G>A	uc001fqu.2	-	9	1962	c.1804C>T	c.(1804-1806)CAT>TAT	p.H602Y	FCRL5_uc009wsm.2_Missense_Mutation_p.H602Y|FCRL5_uc010phv.1_Missense_Mutation_p.H602Y|FCRL5_uc010phw.1_Missense_Mutation_p.H517Y	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	602	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACATCCTCATGATAAAACCAG	0.577													34	118					0	0	0.002836	0	0
FCRL5	83416	broad.mit.edu	37	1	157497650	157497650	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:157497650G>A	uc001fqu.2	-	9	1875	c.1717C>T	c.(1717-1719)CCC>TCC	p.P573S	FCRL5_uc009wsm.2_Missense_Mutation_p.P573S|FCRL5_uc010phv.1_Missense_Mutation_p.P573S|FCRL5_uc010phw.1_Missense_Mutation_p.P488S	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	573	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TGGGCCCTGGGAACCCTGAGG	0.502													15	89					0	0	0.004990	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576568	158576568	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:158576568C>T	uc010pio.1	+	1	340	c.340C>T	c.(340-342)CTT>TTT	p.L114F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TAACTGCTTCCTTCTGGCTGC	0.557													105	109					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158639531	158639531	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:158639531C>T	uc001fst.1	-	13	1844	c.1645G>A	c.(1645-1647)GAT>AAT	p.D549N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	549	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCTCTGAATCATAATGGTCA	0.413													225	133					0	0	0.003610	0	0
CRP	1401	broad.mit.edu	37	1	159683565	159683565	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:159683565C>T	uc001ftw.2	-	2	529	c.425G>A	c.(424-426)GGA>GAA	p.G142E	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	142	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	CACAGTGTATCCCTTCTTCAG	0.552													103	461					0	0	0.003610	0	0
FCRL6	343413	broad.mit.edu	37	1	159778028	159778028	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:159778028G>A	uc001fud.3	+	3	155	c.113G>A	c.(112-114)CGA>CAA	p.R38Q	FCRL6_uc010pix.1_Missense_Mutation_p.R33Q|FCRL6_uc001fuc.2_Missense_Mutation_p.R45Q|FCRL6_uc009wsz.1_Missense_Mutation_p.R38Q|FCRL6_uc009wta.2_Missense_Mutation_p.R38Q	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	38	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CTGACTCTGCGATGTCAGGGA	0.512													12	58					0	0	0.010729	0	0
ITLN1	55600	broad.mit.edu	37	1	160853271	160853271	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:160853271G>A	uc001fxc.2	-	3	220	c.104C>T	c.(103-105)CCA>CTA	p.P35L		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	35	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GGGCAGAGATGGAGACGAAGA	0.443													29	90					0	0	0.005524	0	0
DUSP27	92235	broad.mit.edu	37	1	167064135	167064135	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:167064135G>A	uc001geb.1	+	1	49	c.49G>A	c.(49-51)GAG>AAG	p.E17K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	17					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCCAAGCGAGGAGGACGAAGC	0.572													11	30					0	0	0.001368	0	0
DUSP27	92235	broad.mit.edu	37	1	167096525	167096525	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:167096525C>T	uc001geb.1	+	5	2157	c.2157C>T	c.(2155-2157)TCC>TCT	p.S719S		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	719					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						ACACCATTTCCATTGCCAGTA	0.547													29	68					0	0	0.009535	0	0
TBX19	9095	broad.mit.edu	37	1	168269660	168269660	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:168269660A>T	uc001gfl.2	+	5	717	c.666A>T	c.(664-666)AGA>AGT	p.R222S	TBX19_uc001gfj.3_Missense_Mutation_p.R153S|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	222					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					ACTCTTTCAGAAATCACCTAA	0.448													16	44					0	0	0.007413	0	0
GORAB	92344	broad.mit.edu	37	1	170521292	170521292	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:170521292T>C	uc001gha.2	+	5	901	c.874T>C	c.(874-876)TTG>CTG	p.L292L	GORAB_uc009wvx.2_Silent_p.L112L|GORAB_uc001ghb.2_Silent_p.L112L|GORAB_uc001ghc.2_Silent_p.L112L|GORAB_uc001ghd.2_Silent_p.L85L	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	292	Necessary for interaction with RCHY1.|Potential.					Golgi apparatus|nucleus					0						GGCCAAGAAGTTGGAGGAGTT	0.443													62	40					0	0	0.003610	0	0
FMO3	2328	broad.mit.edu	37	1	171072937	171072937	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:171072937G>A	uc001ghi.2	+	3	255	c.144G>A	c.(142-144)GAG>GAA	p.E48E	FMO3_uc001ghh.2_Silent_p.E48E|FMO3_uc010pmb.1_Silent_p.E28E|FMO3_uc010pmc.1_Intron|MIR1295_hsa-mir-1295|MI0006357_5'Flank	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	48					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACCATGCAGAGGAGGGCAGGG	0.408													96	67					0	0	0.003610	0	0
BAT2L2	23215	broad.mit.edu	37	1	171501485	171501485	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:171501485C>T	uc010pmg.1	+	12	1518	c.1252C>T	c.(1252-1254)CCA>TCA	p.P418S	BAT2L2_uc001ghr.1_Missense_Mutation_p.P420S	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	418							protein C-terminus binding				0						GTTTCAGCATCCACCTCCAGA	0.448													9	31					0	0	0.008291	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526645	173526645	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:173526645A>C	uc001giz.2	-	10	1472	c.1049T>G	c.(1048-1050)TTG>TGG	p.L350W	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	350	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AATAGTAAGCAACCTGTGGAG	0.299													87	118					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552728	173552728	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:173552728C>T	uc001giz.2	-	6	980	c.557G>A	c.(556-558)GGA>GAA	p.G186E	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	186	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CAATGATTCTCCTCTAATGAG	0.299													59	46					0	0	0.003610	0	0
TNN	63923	broad.mit.edu	37	1	175097859	175097859	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:175097859G>A	uc001gkl.1	+	15	3420	c.3307G>A	c.(3307-3309)GAA>AAA	p.E1103K		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1103	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGTGACATGGAAACGGACGG	0.597													12	81					0	0	0.001368	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525476	176525476	+	Silent	SNP	C	T	T	rs148899801		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:176525476C>T	uc001gkz.2	+	2	1182	c.18C>T	c.(16-18)ATC>ATT	p.I6I	PAPPA2_uc001gky.1_Silent_p.I6I|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	6					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.I6I(1)		ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTTAAAGATCCTAAGAATAA	0.517													37	139					0	0	0.010771	0	0
PAPPA2	60676	broad.mit.edu	37	1	176681088	176681088	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:176681088C>T	uc001gkz.2	+	12	4933	c.3769C>T	c.(3769-3771)CTG>TTG	p.L1257L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1257					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGAAGGTAGCCTGAAGAAAGA	0.413													13	69					0	0	0.001855	0	0
ASTN1	460	broad.mit.edu	37	1	177030324	177030324	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:177030324G>A	uc001glc.2	-	2	573	c.361C>T	c.(361-363)CAC>TAC	p.H121Y	ASTN1_uc001glb.1_Missense_Mutation_p.H121Y|ASTN1_uc001gld.1_Missense_Mutation_p.H121Y|ASTN1_uc009wwx.1_Missense_Mutation_p.H121Y	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	121					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TGATGAATGTGAAAAAGCAAA	0.522													78	256					0	0	0.003610	0	0
SEC16B	89866	broad.mit.edu	37	1	177913708	177913708	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:177913708G>A	uc001gli.1	-	15	1959	c.1869C>T	c.(1867-1869)ATC>ATT	p.I623I	SEC16B_uc001glk.1_Silent_p.I300I|SEC16B_uc009wwy.1_Silent_p.I178I|SEC16B_uc001glh.1_Silent_p.I282I|SEC16B_uc009wwz.1_Silent_p.I282I|SEC16B_uc001glj.1_Silent_p.I624I	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	623					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GGAAAGAAGGGATGAAGGATT	0.493													100	66					0	0	0.003610	0	0
TOR1AIP2	163590	broad.mit.edu	37	1	179815820	179815820	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:179815820G>A	uc001gnk.2	-	6	1187	c.799C>T	c.(799-801)CCA>TCA	p.P267S	TOR1AIP2_uc001gnl.2_Missense_Mutation_p.P267S	NM_145034	NP_659471	Q8NFQ8	TOIP2_HUMAN	torsin A interacting protein 2	267						endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1						CTCTGGCCTGGAAATTTATCT	0.493													22	100					0	0	0.002780	0	0
DHX9	1660	broad.mit.edu	37	1	182845262	182845262	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:182845262A>G	uc001gpr.2	+	17	2056	c.1893A>G	c.(1891-1893)GAA>GAG	p.E631E	DHX9_uc001gps.2_Silent_p.E417E	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	631					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						ACGAAAAGGAAACTCCTTTTG	0.393													81	64					0	0	0.003610	0	0
KCNT2	343450	broad.mit.edu	37	1	196438186	196438186	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:196438186C>T	uc001gtd.1	-	6	457	c.397G>A	c.(397-399)GAA>AAA	p.E133K	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Missense_Mutation_p.E133K|KCNT2_uc001gtf.1_Missense_Mutation_p.E133K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E133K|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	133	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AAAATCTGTTCCCAGATGTTT	0.338													7	15					0	0	0.004482	0	0
CFHR3	10878	broad.mit.edu	37	1	196757423	196757423	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:196757423G>A	uc001gtl.2	+	4	595	c.508G>A	c.(508-510)GAA>AAA	p.E170K	CFHR3_uc001gtk.2_Missense_Mutation_p.E170K|CFHR3_uc010poy.1_Intron|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	170	Sushi 3.					extracellular space					0						tttaaataaagaaatacaata	0.284													19	18					0	0	0.006122	0	0
CFHR3	10878	broad.mit.edu	37	1	196762504	196762504	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:196762504G>A	uc001gtl.2	+	6	941	c.854G>A	c.(853-855)AGA>AAA	p.R285K	CFHR3_uc010poy.1_Missense_Mutation_p.R224K|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	285	Sushi 5.					extracellular space					0						TTAAAAGGAAGAAGTGACAGA	0.264													19	78					0	0	0.010504	0	0
CFHR1	3078	broad.mit.edu	37	1	196801096	196801096	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:196801096G>A	uc001gtn.2	+	6	1074	c.960G>A	c.(958-960)GGG>GGA	p.G320G	CFHR1_uc001gtm.2_Silent_p.G224G	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	320	Sushi 5.				complement activation	extracellular space					0						GTTGGGATGGGAAACTGGAGT	0.348													19	64					0	0	0.002299	0	0
CFHR2	3080	broad.mit.edu	37	1	196919996	196919997	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:196919996_196919997CC>TT	uc001gtq.1	+	3	345_346	c.268_269CC>TT	c.(268-270)CCT>TTT	p.P90F	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	90	Sushi 2.					extracellular region				skin(2)|ovary(1)	3						GTGTTTCTTTCCTTTTGTGGAA	0.307													32	48					0	0	0.004672	0	0
CRB1	23418	broad.mit.edu	37	1	197407750	197407751	+	Missense_Mutation	DNP	AC	CA	CA	rs138089138	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:197407750_197407751AC>CA	uc001gtz.2	+	10	3958_3959	c.3823_3824AC>CA	c.(3823-3825)ACA>CAA	p.T1275Q	CRB1_uc010poz.1_Missense_Mutation_p.T1251Q|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.T1163Q|CRB1_uc010ppb.1_Missense_Mutation_p.T739Q|CRB1_uc010ppd.1_Missense_Mutation_p.T756Q|CRB1_uc001gub.1_Missense_Mutation_p.T924Q	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1275	Extracellular (Potential).|EGF-like 18.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGGCAACTGCACAGAGTTCCAG	0.441													17	106					0	0	0.004672	0	0
C1orf106	55765	broad.mit.edu	37	1	200868618	200868618	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:200868618T>A	uc001gvo.2	+	3	358	c.328T>A	c.(328-330)TCC>ACC	p.S110T	C1orf106_uc010ppm.1_Missense_Mutation_p.S25T	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	110										skin(2)|ovary(1)	3						CAGCCCGGTCTCCCCAATGAA	0.627													55	28					0	0	0.003610	0	0
PKP1	5317	broad.mit.edu	37	1	201263089	201263089	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:201263089G>A	uc001gwd.2	+	2	473	c.222G>A	c.(220-222)TTG>TTA	p.L74L	PKP1_uc001gwe.2_Silent_p.L74L|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	74					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						ATGATGGCTTGGCTGACAATT	0.522													8	19					0	0	0.008291	0	0
LGR6	59352	broad.mit.edu	37	1	202287996	202287996	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:202287996G>A	uc001gxu.2	+	18	2565	c.2565G>A	c.(2563-2565)GCG>GCA	p.A855A	LGR6_uc001gxv.2_Silent_p.A803A|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.A716A	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	855	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CCTATGCTGCGGCCGGGGAGC	0.632													52	93					0	0	0.003610	0	0
MYOG	4656	broad.mit.edu	37	1	203054834	203054835	+	Missense_Mutation	DNP	CC	TT	TT	rs148417428		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:203054834_203054835CC>TT	uc001gzd.2	-	1	543_544	c.255_256GG>AA	c.(253-258)GCGGCC>GCAACC	p.A86T		NM_002479	NP_002470	P15173	MYOG_HUMAN	myogenin	86	Basic motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			skin(2)	2						CTCAGTGTGGCCGCCCGCCGCC	0.653													23	92					0	0	0.004672	0	0
SNRPE	6635	broad.mit.edu	37	1	203832801	203832801	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:203832801T>C	uc001hai.2	+	3	140	c.92T>C	c.(91-93)ATT>ACT	p.I31T	SNRPE_uc010pqn.1_RNA	NM_003094	NP_003085	P62304	RUXE_HUMAN	small nuclear ribonucleoprotein polypeptide E	31					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|RNA binding				0	all_cancers(21;0.103)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGATCGCGGATTCAGGTGTGG	0.299													122	82					0	0	0.003610	0	0
REN	5972	broad.mit.edu	37	1	204131262	204131262	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:204131262C>T	uc001haq.2	-	2	172	c.128G>A	c.(127-129)CGA>CAA	p.R43Q		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	43					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	CAGGCTTTCTCGGATTGAGGG	0.567											OREG0014128	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	50					0	0	0.010729	0	0
NFASC	23114	broad.mit.edu	37	1	204923358	204923358	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:204923358G>A	uc001hbj.2	+	6	586	c.258G>A	c.(256-258)AAG>AAA	p.K86K	NFASC_uc001hbh.2_Silent_p.K86K|NFASC_uc010pqz.1_Silent_p.K80K|NFASC_uc010pra.1_Silent_p.K80K|NFASC_uc001hbi.2_Silent_p.K80K|NFASC_uc009xbg.1_Silent_p.K153K|NFASC_uc010prb.1_Silent_p.K80K|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	86	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			ACATCGCCAAGGACCCCCGGG	0.602													24	59					0	0	0.010818	0	0
PM20D1	148811	broad.mit.edu	37	1	205819062	205819062	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:205819062C>T	uc001hdj.2	-	1	184	c.139G>A	c.(139-141)GAA>AAA	p.E47K	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	47						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			GCGACGCGTTCCTCTTTGCTG	0.592													20	85					0	0	0.012319	0	0
DYRK3	8444	broad.mit.edu	37	1	206821165	206821165	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:206821165C>T	uc001hej.2	+	3	790	c.622C>T	c.(622-624)CGA>TGA	p.R208*	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Nonsense_Mutation_p.R188*	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	208					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TCTAGCTTATCGATATGAGGT	0.468													29	76					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	1	211381130	211381130	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:211381130G>A	uc001hid.2	+	1	742	c.550G>A	c.(550-552)GAA>AAA	p.E184K						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		GACAGCCAAGGAAGCCAAGGA	0.517													8	18					0	0	0.003080	0	0
SMYD2	56950	broad.mit.edu	37	1	214500988	214500988	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:214500988G>A	uc010ptx.1	+	7	659	c.626G>A	c.(625-627)TGT>TAT	p.C209Y	SMYD2_uc009xdj.2_Missense_Mutation_p.C117Y|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_RNA	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	209	SET.				negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		AATCATAGCTGTTGCCCCAAT	0.458											OREG0004276	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	46	151					0	0	0.003610	0	0
KCNK2	3776	broad.mit.edu	37	1	215345525	215345525	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:215345525A>G	uc001hkq.2	+	5	991	c.822A>G	c.(820-822)GCA>GCG	p.A274A	KCNK2_uc001hko.2_Silent_p.A270A|KCNK2_uc009xdm.2_Intron|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.A259A	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	274							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	ACTACGTTGCAGGTAAGCTTT	0.383													25	97					0	0	0.008361	0	0
USH2A	7399	broad.mit.edu	37	1	216371854	216371854	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:216371854C>T	uc001hku.1	-	18	4271	c.3884G>A	c.(3883-3885)CGA>CAA	p.R1295Q	USH2A_uc001hkv.2_Missense_Mutation_p.R1295Q	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1295	Fibronectin type-III 3.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGAAAAACTCGACTTTCCTC	0.373										HNSCC(13;0.011)			36	52					0	0	0.004289	0	0
ESRRG	2104	broad.mit.edu	37	1	216692670	216692670	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:216692670G>A	uc001hkw.1	-	6	1122	c.956C>T	c.(955-957)TCG>TTG	p.S319L	ESRRG_uc001hky.1_Missense_Mutation_p.S296L|ESRRG_uc009xdp.1_Missense_Mutation_p.S296L|ESRRG_uc001hkz.1_Missense_Mutation_p.S257L|ESRRG_uc010puc.1_Missense_Mutation_p.S296L|ESRRG_uc001hla.1_Missense_Mutation_p.S296L|ESRRG_uc001hlb.1_Missense_Mutation_p.S296L|ESRRG_uc010pud.1_Missense_Mutation_p.S127L|ESRRG_uc001hlc.1_Missense_Mutation_p.S296L|ESRRG_uc001hld.1_Missense_Mutation_p.S296L|ESRRG_uc001hkx.1_Missense_Mutation_p.S331L|ESRRG_uc009xdo.1_Missense_Mutation_p.S296L|ESRRG_uc001hle.1_Missense_Mutation_p.S296L	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	319					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	ATCCTCAAACGAAAGAGACCG	0.473													18	68					0	0	0.004990	0	0
IARS2	55699	broad.mit.edu	37	1	220318882	220318882	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:220318882C>T	uc001hmc.2	+	22	2887	c.2783C>T	c.(2782-2784)TCT>TTT	p.S928F	IARS2_uc001hmd.2_Missense_Mutation_p.S264F	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	928					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TCCAGCACCTCTCAGTTGAAT	0.398													3	48					0	0	0.000602	0	0
MARK1	4139	broad.mit.edu	37	1	220805608	220805608	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:220805608G>A	uc001hmn.3	+	11	1672	c.1075G>A	c.(1075-1077)GAT>AAT	p.D359N	MARK1_uc009xdw.2_Missense_Mutation_p.D359N|MARK1_uc010pun.1_Missense_Mutation_p.D359N|MARK1_uc001hmm.3_Missense_Mutation_p.D337N	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	359	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TCAGAAGTATGATGAAGTTAT	0.303													72	291					0	0	0.003610	0	0
C1orf55	163859	broad.mit.edu	37	1	226175944	226175944	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:226175944G>A	uc001hpu.3	-	6	840	c.787C>T	c.(787-789)CCC>TCC	p.P263S	C1orf55_uc001hpv.2_Missense_Mutation_p.P263S	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	263										lung(1)	1	Breast(184;0.197)					GAACCACTGGGAAATTTGGCT	0.478													109	203					0	0	0.003610	0	0
ARF1	375	broad.mit.edu	37	1	228285396	228285396	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:228285396C>T	uc001hrr.2	+	4	592	c.364C>T	c.(364-366)CTG>TTG	p.L122L	ARF1_uc001hrs.2_Silent_p.L122L|ARF1_uc001hrt.2_Intron|ARF1_uc009xev.2_Intron|ARF1_uc001hru.2_Silent_p.L122L|ARF1_uc001hrv.2_Silent_p.L122L|ARF1_uc001hrw.2_Silent_p.L122L	NM_001024226	NP_001019397	P84077	ARF1_HUMAN	ADP-ribosylation factor 1	122					cellular copper ion homeostasis|COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|protein transport|regulation of defense response to virus by virus|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction|viral reproduction	cytosol|Golgi membrane|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity|protein binding|receptor signaling protein activity				0		Prostate(94;0.0405)				TGCTGTCCTCCTGGTGTTCGC	0.632													40	21					0	0	0.009718	0	0
TAF5L	27097	broad.mit.edu	37	1	229730347	229730347	+	Silent	SNP	G	A	A	rs145011648	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:229730347G>A	uc001htq.2	-	5	1633	c.1467C>T	c.(1465-1467)GAC>GAT	p.D489D		NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	489	WD 5.				histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				TCAACCGCTGGTCCTCGCCAG	0.572													85	36					0	0	0.003610	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514917	233514917	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:233514917C>T	uc001hvt.3	+	9	2426	c.2165C>T	c.(2164-2166)GCT>GTT	p.A722V	KIAA1804_uc001hvu.3_Missense_Mutation_p.A168V	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	722					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ACGGAGTCAGCTCTGTATGGG	0.547													24	99					0	0	0.003954	0	0
C1orf31	388753	broad.mit.edu	37	1	234509472	234509472	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:234509472C>T	uc001hwc.2	+	1	44	c.8C>T	c.(7-9)CCG>CTG	p.P3L	C1orf31_uc001hwb.2_Intron	NM_001012985	NP_001013003	Q5JTJ3	CA031_HUMAN	hypothetical protein LOC388753	3						mitochondrion	cytochrome-c oxidase activity				0	Ovarian(103;0.0339)	all_cancers(173;0.241)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			ACTATGGGCCCGGGAGGTCCC	0.647													52	137					0	0	0.003610	0	0
CHML	1122	broad.mit.edu	37	1	241797921	241797921	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:241797921C>T	uc001hzd.2	-	1	1312	c.1148G>A	c.(1147-1149)GGA>GAA	p.G383E	OPN3_uc001hza.2_Intron|OPN3_uc001hzb.2_Intron|OPN3_uc001hzc.2_Intron	NM_001821	NP_001812	P26374	RAE2_HUMAN	choroideremia-like Rab escort protein 2	383					intracellular protein transport|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(4)|skin(2)	6	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			GGGAATTTCTCCTTGGCCATA	0.423													22	73					0	0	0.010504	0	0
EXO1	9156	broad.mit.edu	37	1	242020715	242020715	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:242020715T>C	uc001hzh.2	+	7	1014	c.474T>C	c.(472-474)CTT>CTC	p.L158L	EXO1_uc001hzi.2_Silent_p.L158L|EXO1_uc001hzj.2_Silent_p.L158L|EXO1_uc009xgq.2_Silent_p.L158L	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	158	I-domain.|Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			TGGCCTATCTTAACAAAGCGG	0.468								Direct_reversal_of_damage|Editing_and_processing_nucleases					23	97					0	0	0.003954	0	0
NLRP3	114548	broad.mit.edu	37	1	247582221	247582221	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:247582221C>A	uc001icr.2	+	3	263	c.125C>A	c.(124-126)CCG>CAG	p.P42Q	NLRP3_uc001ics.2_Missense_Mutation_p.P42Q|NLRP3_uc001icu.2_Missense_Mutation_p.P42Q|NLRP3_uc001icw.2_Missense_Mutation_p.P42Q|NLRP3_uc001icv.2_Missense_Mutation_p.P42Q|NLRP3_uc010pyw.1_Missense_Mutation_p.P40Q|NLRP3_uc001ict.1_Missense_Mutation_p.P40Q	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	42	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ATCCCCCTCCCGAGGGGTCAG	0.557													15	38					4.93089e-13	5.32153e-13	0.002450	1	0
TRIM58	25893	broad.mit.edu	37	1	248031359	248031359	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:248031359T>C	uc001ido.2	+	5	913	c.865T>C	c.(865-867)TTC>CTC	p.F289L	OR2W3_uc001idp.1_5'UTR	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	289	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CTTAAGGAAGTTCCAAGGTAG	0.512													10	17					0	0	0.008291	0	0
OR2W3	343171	broad.mit.edu	37	1	248059071	248059071	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:248059071C>T	uc001idp.1	+	3	452	c.183C>T	c.(181-183)TTC>TTT	p.F61F	OR2W3_uc010pzb.1_Silent_p.F61F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCATGTACTTCTTCCTCGCCC	0.567													70	235					0	0	0.003610	0	0
OR2T2	401992	broad.mit.edu	37	1	248616210	248616210	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:248616210G>A	uc001iek.1	+	1	112	c.112G>A	c.(112-114)GTG>ATG	p.V38M		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATCTTTGTGGTGGCTATAAC	0.527													67	260					0	0	0.003610	0	0
OR2T34	127068	broad.mit.edu	37	1	248737509	248737510	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr1:248737509_248737510AG>CA	uc001iep.1	-	1	549_550	c.549_550CT>TG	c.(547-552)TTCTGT>TTTGGT	p.C184G		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGAGTCTCACAGAAAAAACTCA	0.51													83	169					0	0	0.004672	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435975	5435975	+	Silent	SNP	G	A	A	rs142943186	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:5435975G>A	uc001ihy.2	-	4	886	c.846C>T	c.(844-846)ATC>ATT	p.I282I	TUBAL3_uc001ihz.2_Silent_p.I242I	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	282					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CAGCAGAGACGATGGGGGCGA	0.517													44	80					0	0	0.003610	0	0
IL2RA	3559	broad.mit.edu	37	10	6066298	6066298	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:6066298T>C	uc001iiz.1	-	3	435	c.276A>G	c.(274-276)AAA>AAG	p.K92K	IL2RA_uc009xih.1_Silent_p.K92K|IL2RA_uc001ija.1_Silent_p.K54K	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	92	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GTGTCACTTGTTTCGTTGTGT	0.413													15	30					0	0	0.002450	0	0
ITIH5	80760	broad.mit.edu	37	10	7621865	7621865	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:7621865C>T	uc001ijq.2	-	9	1350	c.1271G>A	c.(1270-1272)CGA>CAA	p.R424Q	ITIH5_uc001ijp.2_Missense_Mutation_p.R210Q|ITIH5_uc001ijr.1_Missense_Mutation_p.R424Q	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	424	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GGCGGCCTCTCGGGTGTTGTT	0.607													17	40					0	0	0.006122	0	0
TAF3	83860	broad.mit.edu	37	10	8007004	8007004	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:8007004G>C	uc010qbd.1	+	3	1531	c.1531G>C	c.(1531-1533)GAG>CAG	p.E511Q		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	511	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GGTGTATGAGGAGAAAACCAA	0.378													45	69					0	0	0.003610	0	0
CUBN	8029	broad.mit.edu	37	10	17088024	17088024	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:17088024G>A	uc001ioo.2	-	24	3451	c.3399C>T	c.(3397-3399)ATC>ATT	p.I1133I		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1133	CUB 6.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TACTATGAGAGATGATTGTTG	0.378													23	35					0	0	0.002299	0	0
PLXDC2	84898	broad.mit.edu	37	10	20357116	20357116	+	Silent	SNP	C	T	T	rs7912840		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:20357116C>T	uc001iqg.1	+	4	1126	c.489C>T	c.(487-489)TTC>TTT	p.F163F	PLXDC2_uc001iqh.1_Silent_p.F114F	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	163	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ATCTGTCCTTCGATTTTCCAT	0.388													15	28					0	0	0.004007	0	0
C10orf140	387640	broad.mit.edu	37	10	21804515	21804516	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:21804515_21804516GG>AA	uc009xkd.2	-	4	4489_4490	c.2236_2237CC>TT	c.(2236-2238)CCT>TTT	p.P746F	uc001iqp.1_Intron	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	hypothetical protein LOC387640	665						nucleus	nucleotide binding			ovary(1)	1						ATTTAAGGAAGGAGTTTCTTTT	0.446													81	130					0	0	0.004672	0	0
PTF1A	256297	broad.mit.edu	37	10	23481535	23481536	+	Missense_Mutation	DNP	TT	AC	AC			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:23481535_23481536TT>AC	uc001irp.2	+	1	76_77	c.76_77TT>AC	c.(76-78)TTC>ACC	p.F26T		NM_178161	NP_835455	Q7RTS3	PTF1A_HUMAN	pancreas specific transcription factor, 1a	26					endocrine pancreas development|exocrine pancreas development|regulation of transcription, DNA-dependent|tissue development|transcription, DNA-dependent	cytoplasm|transcription factor complex				pancreas(1)|skin(1)	2						CGAGGACGACTTCTTCACCGAC	0.658													113	185					0	0	0.004672	0	0
GPR158	57512	broad.mit.edu	37	10	25886964	25886965	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:25886964_25886965GG>AA	uc001isj.2	+	11	2469_2470	c.2409_2410GG>AA	c.(2407-2412)AAGGAG>AAAAAG	p.E804K	GPR158_uc001isk.2_Missense_Mutation_p.E179K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	804	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGAAATCCAAGGAGGAGACCCT	0.54													24	48					0	0	0.004672	0	0
MYO3A	53904	broad.mit.edu	37	10	26432494	26432494	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:26432494A>G	uc001isn.2	+	21	2740	c.2380A>G	c.(2380-2382)AGT>GGT	p.S794G	MYO3A_uc009xko.1_Missense_Mutation_p.S794G|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	794	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TGATGAAGAAAGTAGATTTCC	0.403													22	27					0	0	0.002780	0	0
APBB1IP	54518	broad.mit.edu	37	10	26849066	26849066	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:26849066C>T	uc001iss.2	+	12	1509	c.1188C>T	c.(1186-1188)ATC>ATT	p.I396I		NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	396	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						CCCAGTATATCAAGTATCTCT	0.463													58	79					0	0	0.003610	0	0
MPP7	143098	broad.mit.edu	37	10	28378660	28378660	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:28378660C>T	uc001iua.1	-	14	1467	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E355K|MPP7_uc009xla.2_Missense_Mutation_p.E355K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	355					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						GTCACTTCTTCGTATGTGGGT	0.378													53	85					0	0	0.003610	0	0
MPP7	143098	broad.mit.edu	37	10	28413985	28413985	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:28413985C>T	uc001iua.1	-	9	887	c.483G>A	c.(481-483)GCG>GCA	p.A161A	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Silent_p.A161A|MPP7_uc009xla.2_Silent_p.A161A|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	161	PDZ.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CCACAATGATCGCCCCGGTCT	0.423													33	52					0	0	0.006230	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316433	30316433	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:30316433G>A	uc001iux.2	-	2	2703	c.2644C>T	c.(2644-2646)CGC>TGC	p.R882C	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.R744C|KIAA1462_uc009xle.1_Missense_Mutation_p.R882C	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	882										ovary(4)	4						CTGTTTCCGCGGAAGCCCACA	0.512													32	47					0	0	0.012213	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430749	37430749	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:37430749C>T	uc001iza.1	+	7	855	c.756C>T	c.(754-756)CCC>CCT	p.P252P		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	308						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AGGCTGCACCCTTGGTGGAAA	0.498													19	32					0	0	0.008871	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38651210	38651210	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:38651210G>A	uc010qex.1	+	3	357	c.282G>A	c.(280-282)GGG>GGA	p.G94G	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Silent_p.G92G					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TAAATGCTGGGATCATGCCTA	0.363													19	61					0	0	0.003954	0	0
ZNF488	118738	broad.mit.edu	37	10	48370805	48370805	+	Silent	SNP	G	A	A	rs145714764		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:48370805G>A	uc001jex.2	+	2	435	c.273G>A	c.(271-273)CCG>CCA	p.P91P	ZNF488_uc001jey.2_Intron	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CGCTGCCCCCGAAGACACGTG	0.687													11	8					0	0	0.010729	0	0
ASAH2	56624	broad.mit.edu	37	10	52002997	52002997	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:52002997C>T	uc001jjd.2	-	3	475	c.475G>A	c.(475-477)GAC>AAC	p.D159N	ASAH2_uc009xos.2_Missense_Mutation_p.D159N	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	159	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						ATGCCTATGTCGATGCTGACA	0.468													41	88					0	0	0.010771	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648351	62648351	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:62648351G>A	uc001jli.2	-	7	1513	c.1075C>T	c.(1075-1077)CTG>TTG	p.L359L	RHOBTB1_uc001jlh.2_Silent_p.L359L|RHOBTB1_uc001jlj.2_Silent_p.L359L|RHOBTB1_uc001jlk.2_Silent_p.L359L|RHOBTB1_uc009xpe.1_Silent_p.L297L|RHOBTB1_uc001jll.2_Silent_p.L109L	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	359	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCGGCTTCCAGCCCCAGAGCC	0.562													48	91					0	0	0.003610	0	0
ARID5B	84159	broad.mit.edu	37	10	63819004	63819004	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:63819004A>T	uc001jlt.1	+	7	1077	c.1051A>T	c.(1051-1053)AAC>TAC	p.N351Y	ARID5B_uc001jlu.1_Missense_Mutation_p.N108Y	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	351	ARID.				liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					TCTAACAGTTAACCTTTGGAC	0.299													17	28					0	0	0.007413	0	0
TET1	80312	broad.mit.edu	37	10	70441225	70441225	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:70441225C>T	uc001jok.3	+	9	5399	c.4894C>T	c.(4894-4896)CCA>TCA	p.P1632S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1632					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GCAGTATGCTCCAGTAGCTTA	0.239													16	23					0	0	0.008871	0	0
NEUROG3	50674	broad.mit.edu	37	10	71332526	71332526	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:71332526C>T	uc001jpp.2	-	2	432	c.274G>A	c.(274-276)GAG>AAG	p.E92K		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	92	Basic motif.				central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						CGATTGCGCTCGCGGTCGTTG	0.657													12	21					0	0	0.001368	0	0
AIFM2	84883	broad.mit.edu	37	10	71874719	71874719	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:71874719G>A	uc010qjg.1	-	7	940	c.927C>T	c.(925-927)ATC>ATT	p.I309I	AIFM2_uc001jqp.1_Silent_p.I309I	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	309					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						CAGAGTTGACGATGTTGGCCA	0.577													9	13					0	0	0.008291	0	0
TYSND1	219743	broad.mit.edu	37	10	71903629	71903629	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:71903629G>A	uc001jqr.2	-	2	1420	c.1266C>T	c.(1264-1266)CCC>CCT	p.P422P	TYSND1_uc001jqq.2_RNA|TYSND1_uc001jqs.2_Intron|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	422	Serine protease.				proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						GCACAGGGATGGGGACATCAT	0.597													11	26					0	0	0.001368	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72462131	72462131	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:72462131G>A	uc001jrh.2	+	3	586	c.586G>A	c.(586-588)GAG>AAG	p.E196K	ADAMTS14_uc001jrg.2_Missense_Mutation_p.E196K	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	196					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GGGCCAGCAGGAGAAGGAGGC	0.632													31	39					0	0	0.012213	0	0
CDH23	64072	broad.mit.edu	37	10	73545396	73545396	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:73545396C>T	uc001jrx.3	+	42	6098	c.5721C>T	c.(5719-5721)ATC>ATT	p.I1907I		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1907	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGACAGGGATCGTCACTGTGA	0.582													3	8					0	0	0.004672	0	0
PSAP	5660	broad.mit.edu	37	10	73588778	73588778	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:73588778G>A	uc001jsm.2	-	5	536	c.432C>T	c.(430-432)CAC>CAT	p.H144H		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	144					glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						GCTCTGCTAGGTGCTTCTGGA	0.572													24	57					0	0	0.007291	0	0
MYST4	23522	broad.mit.edu	37	10	76735652	76735652	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:76735652C>T	uc001jwn.1	+	8	2050	c.1557C>T	c.(1555-1557)CCC>CCT	p.P519P	MYST4_uc001jwm.1_Intron|MYST4_uc001jwo.1_Intron|MYST4_uc001jwp.1_Intron	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	519	Ser-rich.|Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CTCCCTCTCCCCAGAGTTCTT	0.547			T	CREBBP	AML								31	47					0	0	0.010818	0	0
DLG5	9231	broad.mit.edu	37	10	79570962	79570962	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:79570962G>A	uc001jzk.2	-	23	4423	c.4353C>T	c.(4351-4353)TCC>TCT	p.S1451S	DLG5_uc001jzi.2_Silent_p.S206S|DLG5_uc001jzj.2_Silent_p.S866S|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1451					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CCTGGAGAGTGGAGTGGGTAC	0.652													19	54					0	0	0.010504	0	0
DLG5	9231	broad.mit.edu	37	10	79590511	79590511	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:79590511G>A	uc001jzk.2	-	10	1939	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	DLG5_uc001jzj.2_Silent_p.F378F|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.F227F	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	623	PDZ 1.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCTCCCTCTCGAACTCTACAA	0.557													17	29					0	0	0.006122	0	0
TSPAN14	81619	broad.mit.edu	37	10	82271930	82271930	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:82271930G>T	uc001kcj.3	+	6	588	c.481G>T	c.(481-483)GAC>TAC	p.D161Y	TSPAN14_uc009xss.2_Missense_Mutation_p.D38Y|TSPAN14_uc001kci.3_Missense_Mutation_p.D144Y	NM_030927	NP_112189	Q8NG11	TSN14_HUMAN	tetraspanin 14 isoform 1	161						integral to membrane				ovary(1)|central_nervous_system(1)	2			Colorectal(32;0.229)			TGGCCCTGAAGACTGGGACCT	0.592													28	44					9.80776e-20	1.06564e-19	0.006320	1	0
LRIT2	340745	broad.mit.edu	37	10	85982030	85982030	+	Silent	SNP	G	A	A	rs140213191		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:85982030G>A	uc001kcy.2	-	3	1307	c.1299C>T	c.(1297-1299)CTC>CTT	p.L433L	LRIT2_uc010qmc.1_Silent_p.L443L	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	433	Fibronectin type-III.					integral to membrane				ovary(2)	2						CCTCTAGGCTGAGGCAGGCCT	0.557													44	79					0	0	0.003610	0	0
WAPAL	23063	broad.mit.edu	37	10	88218804	88218804	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:88218804C>T	uc001kdo.2	-	12	3041	c.2599G>A	c.(2599-2601)GAA>AAA	p.E867K	WAPAL_uc009xsv.2_Missense_Mutation_p.E181K|WAPAL_uc001kdn.2_Missense_Mutation_p.E904K|WAPAL_uc009xsw.2_Missense_Mutation_p.E861K	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	867	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						CTTTGATTTTCGGGATTATGC	0.239													17	31					0	0	0.010504	0	0
OPN4	94233	broad.mit.edu	37	10	88414668	88414668	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:88414668C>T	uc001kdq.2	+	1	355	c.128C>T	c.(127-129)CCA>CTA	p.P43L	OPN4_uc001kdp.2_Missense_Mutation_p.P43L|OPN4_uc010qmk.1_Missense_Mutation_p.P43L	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	43	Extracellular (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						GGCCGGCTTCCATCCATCAGT	0.657													21	22					0	0	0.012319	0	0
PDE6C	5146	broad.mit.edu	37	10	95394530	95394530	+	Missense_Mutation	SNP	G	A	A	rs148611776		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:95394530G>A	uc001kiu.3	+	9	1273	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	379	GAF 2.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				ACCTGTAGACGAAACTGGTTG	0.303													12	18					0	0	0.001855	0	0
CYP2C9	1559	broad.mit.edu	37	10	96745900	96745900	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:96745900G>A	uc001kka.3	+	8	1285	c.1260G>A	c.(1258-1260)AAG>AAA	p.K420K	CYP2C9_uc009xut.2_Silent_p.K418K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	420					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCAATTTTAAGAAAAGTAAAT	0.348													27	32					0	0	0.004656	0	0
SORBS1	10580	broad.mit.edu	37	10	97096832	97096832	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:97096832G>A	uc001kkp.2	-	28	3130	c.3085C>T	c.(3085-3087)CCC>TCC	p.P1029S	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Missense_Mutation_p.P983S|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1029					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		GACAGGGAGGGACTGGCCCTT	0.592													10	23					0	0	0.010729	0	0
CCNJ	54619	broad.mit.edu	37	10	97816742	97816742	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:97816742G>A	uc001klm.2	+	4	924	c.565G>A	c.(565-567)GAA>AAA	p.E189K	uc001klg.1_Intron|uc001klj.1_Intron|uc009xvb.1_Intron|CCNJ_uc010qoq.1_Missense_Mutation_p.E189K|CCNJ_uc001kln.2_Missense_Mutation_p.E189K	NM_019084	NP_061957	Q5T5M9	CCNJ_HUMAN	cyclin J isoform 2	189						nucleus				ovary(1)	1				Epithelial(162;6.1e-08)|all cancers(201;2.32e-06)		TTACTTCCTGGAAGTATCTTT	0.423													23	49					0	0	0.012319	0	0
C10orf12	26148	broad.mit.edu	37	10	98742449	98742449	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:98742449C>T	uc001kmv.2	+	1	1409	c.1302C>T	c.(1300-1302)GAC>GAT	p.D434D	C10orf12_uc009xvg.1_Silent_p.D744D	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	434										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		TAAATGTCGACCCACTCTTGA	0.512													79	137					0	0	0.003610	0	0
HPS1	3257	broad.mit.edu	37	10	100195443	100195443	+	Silent	SNP	G	A	A	rs149759513		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:100195443G>A	uc010qpf.1	-	4	450	c.204C>T	c.(202-204)ACC>ACT	p.T68T	HPS1_uc001kpi.1_Silent_p.T68T|HPS1_uc001kpj.1_Silent_p.T8T|HPS1_uc001kpk.1_Silent_p.T68T|HPS1_uc009xwb.2_RNA|HPS1_uc010qph.1_Silent_p.T68T|HPS1_uc001kpl.2_Silent_p.T68T	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	68					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		AGCAGGTGTAGGTGTCCGAGA	0.567									Hermansky-Pudlak_syndrome				22	60					0	0	0.010504	0	0
COX15	1355	broad.mit.edu	37	10	101476172	101476172	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:101476172C>T	uc001kqb.3	-	8	1651	c.1034G>A	c.(1033-1035)CGG>CAG	p.R345Q	COX15_uc001kqc.3_Missense_Mutation_p.R345Q|COX15_uc010qpj.1_Missense_Mutation_p.R166Q	NM_078470	NP_510870	Q7KZN9	COX15_HUMAN	COX15 homolog isoform 1	345					heme a biosynthetic process|respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;3.08e-10)|all cancers(201;2.43e-08)		GGGAATTCTCCGAGAGAGGAA	0.458													36	65					0	0	0.004289	0	0
ERLIN1	10613	broad.mit.edu	37	10	101911954	101911954	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:101911954G>A	uc001kqn.3	-	11	1332	c.981C>T	c.(979-981)CTC>CTT	p.L327L	ERLIN1_uc001kqm.3_Silent_p.L92L|ERLIN1_uc001kqo.3_Silent_p.L327L|ERLIN1_uc010qpm.1_Silent_p.L243L	NM_006459	NP_006450	O75477	ERLN1_HUMAN	ER lipid raft associated 1	325	Lumenal (Potential).				ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding				0		Colorectal(252;0.234)		Epithelial(162;3.85e-10)|all cancers(201;3.25e-08)		CCTTAGAGGGGAGTGAGCTTT	0.438													23	31					0	0	0.002299	0	0
PKD2L1	9033	broad.mit.edu	37	10	102089680	102089680	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:102089680C>T	uc001kqx.1	-	1	564	c.181G>A	c.(181-183)GCA>ACA	p.A61T	PKD2L1_uc009xwm.1_Silent_p.R6R	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	61	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GTCCTGTATGCCGTCTCCTGG	0.587													49	43					0	0	0.003610	0	0
WNT8B	7479	broad.mit.edu	37	10	102222947	102222948	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:102222947_102222948GT>AC	uc001krb.2	+	1	136_137	c.22_23GT>AC	c.(22-24)GTG>ACG	p.V8T		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	8					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		AAAGCCTTCTGTGTACATCTGT	0.436													30	54					0	0	0.004672	0	0
CYP17A1	1586	broad.mit.edu	37	10	104597062	104597062	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:104597062C>T	uc001kwg.2	-	1	229	c.57G>A	c.(55-57)AAG>AAA	p.K19K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	19					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GGCACCTTCTCTTGGGCCAAA	0.582													32	51					0	0	0.010818	0	0
LOC729020	729020	broad.mit.edu	37	10	105005787	105005787	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:105005787C>T	uc009xxi.2	+	1	144	c.34C>T	c.(34-36)CTC>TTC	p.L12F	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	12					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						CCCGTCCATCCTCAACAGCGA	0.542													15	25					0	0	0.002450	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105484080	105484080	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:105484080C>T	uc001kxj.1	-	5	486	c.346G>A	c.(346-348)GAA>AAA	p.E116K	SH3PXD2A_uc010qqu.1_Missense_Mutation_p.E46K	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	116	PX.				cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		CGGAAGACTTCGTCACACTGT	0.552													17	19					0	0	0.006122	0	0
SORCS1	114815	broad.mit.edu	37	10	108434807	108434807	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:108434807G>A	uc001kym.2	-	14	1948	c.1940C>T	c.(1939-1941)ACA>ATA	p.T647I	SORCS1_uc001kyl.2_Missense_Mutation_p.T647I|SORCS1_uc009xxs.2_Missense_Mutation_p.T647I|SORCS1_uc001kyn.1_Missense_Mutation_p.T647I|SORCS1_uc001kyo.2_Missense_Mutation_p.T647I	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	647	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TTCAACTTACGTCATGATGAG	0.403													27	59					0	0	0.008361	0	0
SHOC2	8036	broad.mit.edu	37	10	112769567	112769567	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:112769567A>T	uc001kzl.3	+	8	1868	c.1519A>T	c.(1519-1521)ACT>TCT	p.T507S	SHOC2_uc009xxx.2_Missense_Mutation_p.T507S|SHOC2_uc010qrg.1_Missense_Mutation_p.T146S|SHOC2_uc001kzn.2_Missense_Mutation_p.T461S	NM_007373	NP_031399	Q9UQ13	SHOC2_HUMAN	soc-2 suppressor of clear homolog	507	LRR 18.				fibroblast growth factor receptor signaling pathway|positive regulation of Ras protein signal transduction|Ras protein signal transduction	nucleus|protein phosphatase type 1 complex	protein phosphatase binding|protein phosphatase regulator activity			ovary(1)|skin(1)	2				Epithelial(162;0.000796)|all cancers(201;0.011)|BRCA - Breast invasive adenocarcinoma(275;0.126)		GAACCTACTTACTCACCTTCC	0.398													11	36					0	0	0.008291	0	0
NRAP	4892	broad.mit.edu	37	10	115349449	115349450	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:115349449_115349450CC>TT	uc001laj.2	-	41	5227_5228	c.5063_5064GG>AA	c.(5062-5064)AGG>AAA	p.R1688K	NRAP_uc009xyb.2_Missense_Mutation_p.R441K|NRAP_uc001lak.2_Missense_Mutation_p.R1653K|NRAP_uc001lal.3_Missense_Mutation_p.R1688K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1688						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GACCCAGGCCCCTTGCGTTGGC	0.55													32	55					0	0	0.004672	0	0
NRAP	4892	broad.mit.edu	37	10	115411667	115411667	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:115411667C>T	uc001laj.2	-	7	735	c.571_splice	c.e7-1	p.V191_splice	NRAP_uc001lak.2_Splice_Site_p.V191_splice|NRAP_uc001lal.3_Splice_Site_p.V191_splice	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S							fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TATACTCCACCTGATGAGAAG	0.552													11	14					0	0	0.001855	0	0
ATRNL1	26033	broad.mit.edu	37	10	117309040	117309040	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:117309040G>A	uc001lcg.2	+	26	4175	c.3789G>A	c.(3787-3789)CGG>CGA	p.R1263R	ATRNL1_uc010qsm.1_Silent_p.R392R|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1263	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CTTCTCGACGGAGAGAGGTAT	0.343													18	30					0	0	0.006122	0	0
WDR11	55717	broad.mit.edu	37	10	122665387	122665388	+	Splice_Site	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:122665387_122665388GG>AA	uc010qtf.1	+	27	3530	c.3292_splice	c.e27-1	p.V1098_splice	WDR11_uc010qte.1_Splice_Site_p.V700_splice|WDR11_uc001lfd.1_Splice_Site_p.V616_splice|WDR11_uc009xzn.2_Splice_Site_p.V389_splice|uc001lfe.1_5'Flank	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2							integral to membrane					0						GTCTTTCTCAGGTCCGTTTGAA	0.406													23	53					0	0	0.004672	0	0
TACC2	10579	broad.mit.edu	37	10	123843781	123843781	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:123843781G>A	uc001lfv.2	+	4	2126	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G589E|TACC2_uc010qtv.1_Missense_Mutation_p.G589E	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	589						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCTGATGGTGGAGACCCAGGG	0.547													13	37					0	0	0.002450	0	0
DMBT1	1755	broad.mit.edu	37	10	124402818	124402818	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:124402818G>A	uc001lgk.1	+	53	7252	c.7146G>A	c.(7144-7146)TCG>TCA	p.S2382S	DMBT1_uc001lgl.1_Silent_p.S2372S|DMBT1_uc001lgm.1_Silent_p.S1754S|DMBT1_uc009xzz.1_Silent_p.S2381S|DMBT1_uc010qtx.1_Silent_p.S1102S|DMBT1_uc009yab.1_Silent_p.S1085S|DMBT1_uc009yac.1_Silent_p.S676S	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2382					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGTTGAGGTCGAAGAGGGATG	0.612													43	54					0	0	0.009718	0	0
DOCK1	1793	broad.mit.edu	37	10	129216633	129216633	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:129216633A>C	uc001ljt.2	+	45	4521	c.4457A>C	c.(4456-4458)GAA>GCA	p.E1486A	DOCK1_uc010qun.1_Missense_Mutation_p.E1507A|DOCK1_uc009yaq.2_Missense_Mutation_p.E481A	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1486	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TTGCAGGTGGAAATCAGCCCC	0.607													6	15					0	0	0.001168	0	0
EBF3	253738	broad.mit.edu	37	10	131755553	131755553	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:131755553C>T	uc001lki.1	-	6	582	c.523G>A	c.(523-525)GAA>AAA	p.E175K		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	175					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GAGGGCGTTTCGTTTCTATTG	0.418													28	50					0	0	0.002836	0	0
LRRC27	80313	broad.mit.edu	37	10	134147046	134147046	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:134147046C>T	uc010quw.1	+	2	213	c.18C>T	c.(16-18)TCC>TCT	p.S6S	STK32C_uc010quu.1_5'Flank|STK32C_uc009ybc.1_5'Flank|STK32C_uc009ybd.1_5'Flank|LRRC27_uc001llf.2_Silent_p.S6S|LRRC27_uc010quv.1_Silent_p.S6S|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Silent_p.S6S|LRRC27_uc001llj.2_5'Flank	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	6										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		GAAGCAGCTCCTACGAAGTTC	0.567													15	24					0	0	0.004990	0	0
GPR123	84435	broad.mit.edu	37	10	134942560	134942560	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:134942560G>A	uc001llx.3	+	7	1664	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N	GPR123_uc001llw.2_Missense_Mutation_p.D1129N	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	410	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CTTCGGGCACGACCCCCACCT	0.682													3	6					0	0	0.009096	0	0
KNDC1	85442	broad.mit.edu	37	10	134999848	134999848	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:134999848C>T	uc001llz.1	+	6	997	c.996C>T	c.(994-996)CCC>CCT	p.P332P	KNDC1_uc001lma.1_Silent_p.P267P	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	332					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCCAGCTGCCCATATCGGAAT	0.622													6	23					0	0	0.003080	0	0
SCGB1C1	147199	broad.mit.edu	37	11	193724	193724	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:193724G>A	uc001loa.1	+	2	88	c.68G>A	c.(67-69)GGG>GAG	p.G23E		NM_145651	NP_663626	Q8TD33	SG1C1_HUMAN	secretoglobin, family 1C, member 1 precursor	23						extracellular region	binding			skin(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATGGCCACAGGGGAGGACAAC	0.582													9	35					0	0	0.004482	0	0
PHRF1	57661	broad.mit.edu	37	11	609256	609257	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:609256_609257CC>TT	uc001lqe.2	+	14	3931_3932	c.3800_3801CC>TT	c.(3799-3801)GCC>GTT	p.A1267V	PHRF1_uc010qwc.1_Missense_Mutation_p.A1266V|PHRF1_uc010qwd.1_Missense_Mutation_p.A1265V|PHRF1_uc010qwe.1_Missense_Mutation_p.A1263V|PHRF1_uc009ybz.1_Missense_Mutation_p.A1057V|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1267							RNA polymerase binding|zinc ion binding				0						TCCGTGGAGGCCGGACACGTCT	0.619													44	19					0	0	0.004672	0	0
LOC338651	338651	broad.mit.edu	37	11	1619092	1619092	+	Missense_Mutation	SNP	G	A	A	rs151223920	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:1619092G>A	uc009ycx.1	+	2	943	c.192G>A	c.(190-192)ATG>ATA	p.M64I	LOC338651_uc001ltt.1_RNA|KRTAP5-2_uc001ltv.2_Missense_Mutation_p.S130L	NR_021489				SubName: Full=cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;          EC=2.7.7.6;												0						GCAGCAGGATGATCCACAGCC	0.637													125	34					0	0	0.003610	0	0
ZNF195	7748	broad.mit.edu	37	11	3381777	3381777	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:3381777G>A	uc001lxt.2	-	6	639	c.461C>T	c.(460-462)ACC>ATC	p.T154I	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.T131I|ZNF195_uc001lxs.2_Missense_Mutation_p.T82I|ZNF195_uc010qxr.1_Missense_Mutation_p.T135I|ZNF195_uc009ydz.2_Missense_Mutation_p.T109I|ZNF195_uc001lxu.2_Missense_Mutation_p.T86I	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	154	Spacer.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		AAGGTCTTGGGTAAAATGAGA	0.328													25	9					0	0	0.003330	0	0
OR52I2	143502	broad.mit.edu	37	11	4608286	4608286	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:4608286G>A	uc010qyh.1	+	1	244	c.244G>A	c.(244-246)GAT>AAT	p.D82N		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	82	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATCTGGATGGATTCCACTCG	0.493													140	53					0	0	0.003610	0	0
OR51F1	256892	broad.mit.edu	37	11	4791139	4791139	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:4791139G>A	uc010qyl.1	-	1	9	c.9C>T	c.(7-9)ATC>ATT	p.I3I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	3						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGTTGCTTAGGATTTCCATGG	0.388													8	2					0	0	0.008291	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537114	5537114	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:5537114G>A	uc001maz.3	-	1	843	c.558C>T	c.(556-558)TCC>TCT	p.S186S	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	186										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		ACTCCATGTTGGACAGAAGCC	0.483													83	35					0	0	0.003610	0	0
OR52N4	390072	broad.mit.edu	37	11	5776682	5776682	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:5776682A>T	uc001mbu.2	+	1	760	c.712A>T	c.(712-714)AAG>TAG	p.K238*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	238	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TGCTCGGCAGAAGGCCTTTAA	0.493													86	32					0	0	0.003610	0	0
OR10A6	390093	broad.mit.edu	37	11	7949784	7949784	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:7949784C>T	uc010rbh.1	-	1	426	c.426G>A	c.(424-426)ATG>ATA	p.M142I		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TAATTAATTTCATAAAAACTC	0.358													21	6					0	0	0.012319	0	0
NLRP10	338322	broad.mit.edu	37	11	7981691	7981691	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:7981691C>T	uc001mfv.1	-	2	1485	c.1468G>A	c.(1468-1470)GAG>AAG	p.E490K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	490							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTGCGGGACTCCTTCCCCAGC	0.498													79	28					0	0	0.003610	0	0
ZNF143	7702	broad.mit.edu	37	11	9519272	9519272	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:9519272C>T	uc001mhr.2	+	10	1010	c.892C>T	c.(892-894)CGG>TGG	p.R298W	ZNF143_uc009yfu.2_Missense_Mutation_p.R297W|ZNF143_uc010rby.1_Missense_Mutation_p.R267W	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	298	C2H2-type 3.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		AAAGCCATATCGGTGTTCGGA	0.328													32	9					0	0	0.004289	0	0
SLC5A12	159963	broad.mit.edu	37	11	26705386	26705386	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:26705386G>A	uc001mra.2	-	11	1539	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	409	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AATGCTGAGGGAAGCCTGTGG	0.458													5	5					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	11	31115680	31115680	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:31115680A>T	uc009yjk.1	-	4	448	c.379T>A	c.(379-381)TTC>ATC	p.F127I	uc009yjl.1_Missense_Mutation_p.F55I|DCDC1_uc001msu.1_Missense_Mutation_p.F298I					RecName: Full=Doublecortin domain-containing protein 5;																		CTGCCTGAGAAACTCCACTTT	0.448													46	17					0	0	0.003610	0	0
OR5B12	390191	broad.mit.edu	37	11	58206830	58206830	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:58206830G>A	uc010rkh.1	-	1	795	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CTGTGCCCATGAAATGGCTGG	0.453													26	5					0	0	0.005443	0	0
GLYAT	10249	broad.mit.edu	37	11	58478113	58478113	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:58478113G>A	uc001nnb.2	-	5	593	c.438C>T	c.(436-438)TTC>TTT	p.F146F	GLYAT_uc001nnc.2_Silent_p.F146F	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	146					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	ATTTCAGCAGGAAAGGAGTCA	0.403													91	24					0	0	0.003610	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702137	60702137	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:60702137C>T	uc001nqj.2	+	9	1930	c.1737C>T	c.(1735-1737)CAC>CAT	p.H579H	TMEM132A_uc001nqi.2_Silent_p.H580H|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	579	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ACGTGTCCCACCTCGTGGCGC	0.731													16	3					0	0	0.004990	0	0
INCENP	3619	broad.mit.edu	37	11	61912749	61912749	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:61912749G>A	uc001nsw.1	+	13	2026	c.1824G>A	c.(1822-1824)GAG>GAA	p.E608E	INCENP_uc009ynw.1_Silent_p.E608E|INCENP_uc001nsx.1_Silent_p.E604E|INCENP_uc001nsy.1_Silent_p.E18E	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	608	Potential.				chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						AGATCGACGAGAAGACTGAGA	0.572													56	18					0	0	0.003610	0	0
SCGB1D4	404552	broad.mit.edu	37	11	62065005	62065005	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:62065005C>T	uc001ntd.1	-	2	235	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	61						extracellular region	binding				0						TGCTTCACTTCCAACTTGGCT	0.423													189	50					0	0	0.003610	0	0
AHNAK	79026	broad.mit.edu	37	11	62299867	62299867	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:62299867C>T	uc001ntl.2	-	5	2322	c.2022G>A	c.(2020-2022)GAG>GAA	p.E674E	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	674					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCCCCAGACCCTCCAAGTTGA	0.483													92	30					0	0	0.003610	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149655	63149655	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:63149655G>A	uc001nww.2	+	6	1247	c.979G>A	c.(979-981)GAA>AAA	p.E327K	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	327	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CATGAAAAAAGAACTGGAGGC	0.418													102	28					0	0	0.003610	0	0
ATL3	25923	broad.mit.edu	37	11	63396854	63396855	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:63396854_63396855GG>AA	uc001nxk.1	-	13	1838_1839	c.1562_1563CC>TT	c.(1561-1563)TCC>TTT	p.S521F	ATL3_uc010rms.1_Missense_Mutation_p.S503F|uc001nxj.1_5'Flank|ATL3_uc010rmr.1_Missense_Mutation_p.S179F	NM_015459	NP_056274	Q6DD88	ATLA3_HUMAN	atlastin 3	521	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			pancreas(1)	1						TGGCCTGAGTGGAATTACCGAT	0.371													18	12					0	0	0.004672	0	0
ATG2A	23130	broad.mit.edu	37	11	64664943	64664943	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:64664943G>A	uc001obx.2	-	37	5206	c.5091C>T	c.(5089-5091)ATC>ATT	p.I1697I	ATG2A_uc001obw.2_Silent_p.I462I	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1697							protein binding			ovary(1)|central_nervous_system(1)	2						GGGCCAGGCCGATGAGGAGGC	0.632													9	4					0	0	0.006214	0	0
ATG2A	23130	broad.mit.edu	37	11	64669618	64669618	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:64669618G>A	uc001obx.2	-	29	4050	c.3935C>T	c.(3934-3936)TCC>TTC	p.S1312F	ATG2A_uc001obw.2_Missense_Mutation_p.S77F	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1312							protein binding			ovary(1)|central_nervous_system(1)	2						TAGGTAGACGGAGATGGGCGA	0.637													47	15					0	0	0.013114	0	0
SLC22A20	440044	broad.mit.edu	37	11	65004342	65004342	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:65004342C>T	uc010roc.1	+	10	1557	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I	SLC22A20_uc001odi.3_RNA	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	518	Extracellular (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						TGGAGACCATCGCAGCCATGG	0.642													66	20					0	0	0.003610	0	0
SIPA1	6494	broad.mit.edu	37	11	65414473	65414473	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:65414473G>A	uc001ofb.2	+	8	2135	c.1968G>A	c.(1966-1968)GCG>GCA	p.A656A	SIPA1_uc010rom.1_Silent_p.A554A|SIPA1_uc001ofd.2_Silent_p.A656A	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	656					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						GCGGGGAGGCGATCACGCTGC	0.716													3	1					0	0	0.009096	0	0
CCND1	595	broad.mit.edu	37	11	69456187	69456187	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:69456187G>A	uc001opa.2	+	1	315	c.106G>A	c.(106-108)GAG>AAG	p.E36K		NM_053056	NP_444284	P24385	CCND1_HUMAN	cyclin D1	36	Cyclin N-terminal.				cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|mitotic cell cycle G1/S transition DNA damage checkpoint|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation|response to drug|response to UV-A|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane|nucleoplasm	protein kinase binding			ovary(1)|lung(1)	2	all_cancers(3;2.01e-114)|all_epithelial(3;3.59e-122)|Breast(3;5.4e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;8.22e-16)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;7.2e-57)|all cancers(3;7.75e-51)|BRCA - Breast invasive adenocarcinoma(2;4.9e-48)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)		Arsenic trioxide(DB01169)	GAAGGCGGAGGAGACCTGCGC	0.647			T	IGH@|FSTL3	CLL|B-ALL|breast					Multiple Myeloma(6;0.086)			59	23					0	0	0.003610	0	0
P4HA3	283208	broad.mit.edu	37	11	74013507	74013507	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:74013507G>A	uc001ouz.2	-	3	517	c.474C>T	c.(472-474)GTC>GTT	p.V158V	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Silent_p.V158V	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	158						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					CTCTCTGAAAGACACCTCGGG	0.552													111	35					0	0	0.003610	0	0
GRM5	2915	broad.mit.edu	37	11	88301112	88301112	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:88301112G>A	uc001pcq.2	-	7	1939	c.1739C>T	c.(1738-1740)CCC>CTC	p.P580L	GRM5_uc009yvm.2_Missense_Mutation_p.P580L	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	580	Helical; Name=1; (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AGCTGCAATGGGTTCAGGGTC	0.488													23	6					0	0	0.012319	0	0
TYR	7299	broad.mit.edu	37	11	88911295	88911296	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:88911295_88911296CC>TT	uc001pcs.2	+	1	256_257	c.174_175CC>TT	c.(172-177)ATCCTT>ATTTTT	p.L59F		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	59	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	GTCAGAATATCCTTCTGTCCAA	0.55									Oculocutaneous_Albinism				25	5					0	0	0.004672	0	0
FAT3	120114	broad.mit.edu	37	11	92086011	92086011	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:92086011G>A	uc001pdj.3	+	1	750	c.733G>A	c.(733-735)GGA>AGA	p.G245R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	245	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGGAACAATGGAGTGAGCAG	0.403										TCGA Ovarian(4;0.039)			461	128					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92086820	92086820	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:92086820G>A	uc001pdj.3	+	1	1559	c.1542G>A	c.(1540-1542)CTG>CTA	p.L514L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	514	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCGCTAGCCTGAATTTGTTAC	0.378										TCGA Ovarian(4;0.039)			360	124					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92086872	92086872	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:92086872G>A	uc001pdj.3	+	1	1611	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	532	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TAGCACAACTGAAGAACTGGA	0.398										TCGA Ovarian(4;0.039)			369	144					0	0	0.003610	0	0
TRPC6	7225	broad.mit.edu	37	11	101340233	101340233	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:101340233C>T	uc001pgk.3	-	10	2835	c.2410_splice	c.e10-1	p.I804_splice	TRPC6_uc009ywy.2_Splice_Site_p.I688_splice|TRPC6_uc009ywz.1_Splice_Site_p.I749_splice	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,						axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		cttcatttatcttttaaagat	0.109													15	2					0	0	0.002450	0	0
PDGFD	80310	broad.mit.edu	37	11	103797677	103797677	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:103797677G>A	uc001phq.2	-	6	1322	c.950C>T	c.(949-951)ACA>ATA	p.T317I	PDGFD_uc001php.2_Missense_Mutation_p.T311I	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	317					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		TGAATTGCATGTGCAGGACCT	0.438													31	6					0	0	0.012213	0	0
DSCAML1	57453	broad.mit.edu	37	11	117342748	117342748	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:117342748G>A	uc001prh.1	-	15	2971	c.2969C>T	c.(2968-2970)TCC>TTC	p.S990F		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	930	Extracellular (Potential).|Fibronectin type-III 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GAAGTCCCAGGAATCTGGAGA	0.527													36	10					0	0	0.003755	0	0
CD3D	915	broad.mit.edu	37	11	118211302	118211302	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:118211302G>A	uc001pss.1	-	2	199	c.62C>T	c.(61-63)CCC>CTC	p.P21L	CD3D_uc001pst.1_Missense_Mutation_p.P21L	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	21					positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		TATCTTGAAGGGGCTCACTAA	0.458													23	16					0	0	0.002780	0	0
OR8B4	283162	broad.mit.edu	37	11	124293956	124293956	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:124293956C>T	uc010sak.1	-	1	812	c.812G>A	c.(811-813)AGA>AAA	p.R271K		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	271	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAGGCAAATCTGCCATGGTT	0.453													35	5					0	0	0.003755	0	0
PANX3	116337	broad.mit.edu	37	11	124481516	124481517	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:124481516_124481517GG>AA	uc001qah.2	+	1	64_65	c.64_65GG>AA	c.(64-66)GGA>AAA	p.G22K		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	22	Cytoplasmic (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		TGACCGCAGGGGACCCCGCCTC	0.609													30	9					0	0	0.004672	0	0
PANX3	116337	broad.mit.edu	37	11	124481543	124481543	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:124481543G>A	uc001qah.2	+	1	91	c.91G>A	c.(91-93)GAA>AAA	p.E31K		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	31	Cytoplasmic (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		ACTGCGTCTGGAACTGCCCCT	0.587													28	11					0	0	0.010818	0	0
DDX25	29118	broad.mit.edu	37	11	125791205	125791205	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:125791205A>G	uc001qcz.3	+	11	1462	c.1321A>G	c.(1321-1323)AAA>GAA	p.K441E	DDX25_uc010sbk.1_Missense_Mutation_p.K441E	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	441	Helicase C-terminal.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		CTTTGGGAAAAAAGGCCTTGC	0.488													21	3					0	0	0.002780	0	0
SNX19	399979	broad.mit.edu	37	11	130781576	130781576	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:130781576G>A	uc001qgk.3	-	2	2313	c.1765C>T	c.(1765-1767)CTG>TTG	p.L589L	SNX19_uc010sce.1_5'UTR|SNX19_uc010scf.1_Silent_p.L32L|SNX19_uc010scg.1_5'UTR|SNX19_uc001qgl.3_Silent_p.L589L|SNX19_uc009zcx.1_RNA	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	589	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		CGGGTCTGCAGATTCAAGAAC	0.552													33	12					0	0	0.002836	0	0
SLC6A13	6540	broad.mit.edu	37	12	333250	333250	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:333250G>A	uc001qic.1	-	11	1272	c.1219C>T	c.(1219-1221)CCT>TCT	p.P407S	SLC6A13_uc009zdj.1_Missense_Mutation_p.P397S|SLC6A13_uc010sdl.1_Missense_Mutation_p.P315S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	407					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AACACGTGAGGGTACATGTCC	0.562													16	32					0	0	0.004990	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662863	662863	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:662863G>A	uc001qii.1	+	14	1774	c.1774G>A	c.(1774-1776)GAA>AAA	p.E592K	B4GALNT3_uc001qij.1_Missense_Mutation_p.E495K|B4GALNT3_uc001qik.1_Missense_Mutation_p.E141K	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	592	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			TGGGGAGGAGGAAGTGGTGGC	0.493													16	23					0	0	0.004990	0	0
ITFG2	55846	broad.mit.edu	37	12	2930439	2930439	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:2930439C>T	uc001qlb.1	+	7	771	c.707C>T	c.(706-708)GCT>GTT	p.A236V	ITFG2_uc010seb.1_Missense_Mutation_p.A59V|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	236											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GAGACCCCAGCTGCCCGAGAC	0.552													7	9					0	0	0.001984	0	0
TULP3	7289	broad.mit.edu	37	12	3018744	3018744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:3018744C>T	uc010seh.1	+	2	172	c.91C>T	c.(91-93)CAG>TAG	p.Q31*	TULP3_uc010sef.1_RNA|TULP3_uc009zec.1_5'UTR|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Nonsense_Mutation_p.Q31*|TULP3_uc010sei.1_5'UTR	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	31					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GCTGGATTATCAGGTGAGCAG	0.403													37	81					0	0	0.006230	0	0
TAPBPL	55080	broad.mit.edu	37	12	6566747	6566747	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:6566747G>A	uc001qog.3	+	4	979	c.741G>A	c.(739-741)CAG>CAA	p.Q247Q	TAPBPL_uc001qoh.3_Silent_p.Q105Q|TAPBPL_uc001qoi.1_Intron	NM_018009	NP_060479	Q9BX59	TPSNR_HUMAN	TAP binding protein-like precursor	247	Lumenal (Potential).|Ig-like V-type.				antigen processing and presentation of endogenous peptide antigen via MHC class I	endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane					0						GGCAGGGGCAGGCTGTGCGGA	0.657													10	31					0	0	0.006214	0	0
CHD4	1108	broad.mit.edu	37	12	6702774	6702774	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:6702774G>A	uc001qpo.2	-	16	2486	c.2322C>T	c.(2320-2322)TCC>TCT	p.S774S	CHD4_uc001qpn.2_Silent_p.S767S|CHD4_uc001qpp.2_Silent_p.S771S	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	774	Helicase ATP-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						AGGGGCCTTTGGAATGACCCT	0.557													25	53					0	0	0.004656	0	0
ING4	51147	broad.mit.edu	37	12	6761532	6761532	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:6761532C>T	uc001qpw.3	-	6	594	c.553G>A	c.(553-555)GAT>AAT	p.D185N	ING4_uc001qpv.3_Missense_Mutation_p.D184N|ING4_uc001qpy.3_Missense_Mutation_p.D181N|ING4_uc001qpx.3_Missense_Mutation_p.D182N|ING4_uc009zes.2_Intron|ING4_uc009zet.2_Missense_Mutation_p.D161N|ING4_uc009zeu.2_Intron|ING4_uc009zev.2_RNA	NM_001127582	NP_001121054	Q9UNL4	ING4_HUMAN	inhibitor of growth family, member 4 isoform 9	185					apoptosis|cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell proliferation|negative regulation of growth|negative regulation of transcription, DNA-dependent|positive regulation of apoptosis	histone acetyltransferase complex	protein binding|transcription coactivator activity|zinc ion binding			central_nervous_system(3)|ovary(1)	4						TCCAACACATCAGAGGGGTGG	0.512													38	80					0	0	0.004878	0	0
C1S	716	broad.mit.edu	37	12	7173252	7173252	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:7173252G>A	uc001qsj.2	+	10	1568	c.849G>A	c.(847-849)TGG>TGA	p.W283*	C1S_uc001qsk.2_Nonsense_Mutation_p.W283*|C1S_uc001qsl.2_Nonsense_Mutation_p.W283*|C1S_uc009zfr.2_Nonsense_Mutation_p.W116*|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	283	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	AAAAGGGCTGGAAACTTCGCT	0.428													20	37					0	0	0.003954	0	0
C1R	715	broad.mit.edu	37	12	7188163	7188164	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:7188163_7188164CC>TT	uc010sfy.1	-	10	1849_1850	c.1790_1791GG>AA	c.(1789-1791)GGG>GAA	p.G597E		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	597	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCTCCATGACCCCGAAGCCACT	0.554													15	23					0	0	0.004672	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329731	8329731	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:8329731C>T	uc001qud.1	+	5	527	c.455C>T	c.(454-456)TCT>TTT	p.S152F		NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		TGTGGAAAATCTCTTCGTAAT	0.358													81	126					0	0	0.003610	0	0
A2ML1	144568	broad.mit.edu	37	12	8995903	8995903	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:8995903T>A	uc001quz.3	+	12	1520	c.1422T>A	c.(1420-1422)TAT>TAA	p.Y474*	A2ML1_uc001qva.1_Nonsense_Mutation_p.Y54*|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	318						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TGGTGGATTATTACATCGACC	0.572													28	38					0	0	0.009535	0	0
TAS2R9	50835	broad.mit.edu	37	12	10962106	10962106	+	Missense_Mutation	SNP	G	A	A	rs115762530	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:10962106G>A	uc001qyx.2	-	1	662	c.569C>T	c.(568-570)CCC>CTC	p.P190L	TAS2R8_uc010shh.1_5'Flank	NM_023917	NP_076406	Q9NYW1	TA2R9_HUMAN	taste receptor, type 2, member 9	190	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						AAGGATAAAGGGAACCATCAC	0.413													15	36					0	0	0.004990	0	0
C12orf36	283422	broad.mit.edu	37	12	13526360	13526360	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:13526360C>T	uc001rbs.1	-	3	413	c.195G>A	c.(193-195)GGG>GGA	p.G65G		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		ATTCCTCATTCCCAAATCTGT	0.458													21	26					0	0	0.008871	0	0
GUCY2C	2984	broad.mit.edu	37	12	14829847	14829847	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:14829847G>A	uc001rcd.2	-	7	1026	c.889C>T	c.(889-891)CTG>TTG	p.L297L	GUCY2C_uc009zhz.2_Silent_p.L297L	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	297	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GACAGCGTCAGAACAAGGACA	0.338													15	31					0	0	0.004990	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435596	18435596	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:18435596G>A	uc001rdt.2	+	2	697	c.581G>A	c.(580-582)AGG>AAG	p.R194K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R194K|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	194					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GAGAATAAAAGGAGTGGACAT	0.383													65	85					0	0	0.003610	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18716344	18716344	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:18716344G>A	uc001rdt.2	+	27	3807	c.3691G>A	c.(3691-3693)GAA>AAA	p.E1231K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E1272K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E1050K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1231	PX.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGCAACAACGAAACAAGCCT	0.418													10	26					0	0	0.006214	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20868209	20868209	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:20868209T>C	uc001rej.3	+	7	1021	c.666T>C	c.(664-666)GCT>GCC	p.A222A	SLCO1C1_uc010sii.1_Silent_p.A222A|SLCO1C1_uc010sij.1_Intron|SLCO1C1_uc009zip.2_Silent_p.A56A|SLCO1C1_uc001rei.2_Silent_p.A222A|SLCO1C1_uc010sik.1_Silent_p.A104A	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	222	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					ACAATGCAGCTTTCTATATTG	0.423													18	42					0	0	0.006122	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032415	21032415	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:21032415G>A	uc001rek.2	+	10	1307	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E	SLCO1B3_uc001rel.2_Missense_Mutation_p.G394E|SLCO1B3_uc010sil.1_Missense_Mutation_p.G394E|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G219E	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	394	Helical; Name=8; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTTTTAGGAGGATTTATCATT	0.284													19	35					0	0	0.010504	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036398	21036398	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:21036398G>A	uc001rek.2	+	12	1670	c.1544G>A	c.(1543-1545)AGA>AAA	p.R515K	SLCO1B3_uc001rel.2_Missense_Mutation_p.R515K|SLCO1B3_uc010sil.1_Missense_Mutation_p.R515K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.R340K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	515	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTCCAGAACAGAAATTACTCA	0.333													14	39					0	0	0.006122	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21327576	21327576	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:21327576G>A	uc001req.3	+	4	396	c.292G>A	c.(292-294)GGA>AGA	p.G98R		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	98	Helical; Name=3; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	AAAGTTAATTGGAATCGGTTG	0.343													21	24					0	0	0.012319	0	0
ABCC9	10060	broad.mit.edu	37	12	22001175	22001175	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:22001175C>T	uc001rfi.1	-	23	2795	c.2775G>A	c.(2773-2775)ATG>ATA	p.M925I	ABCC9_uc001rfh.2_Missense_Mutation_p.M925I|ABCC9_uc001rfj.1_Missense_Mutation_p.M889I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	925	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GGTCAGCTTCCATATCCTGCA	0.428													21	34					0	0	0.012319	0	0
DENND5B	160518	broad.mit.edu	37	12	31586121	31586121	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:31586121C>T	uc001rki.1	-	8	2260	c.2074G>A	c.(2074-2076)GAG>AAG	p.E692K	DENND5B_uc001rkh.1_Missense_Mutation_p.E727K|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.E714K	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	692						integral to membrane				ovary(1)|central_nervous_system(1)	2						CCAACATGCTCAGAATGCTGG	0.502													38	105					0	0	0.006999	0	0
CNTN1	1272	broad.mit.edu	37	12	41422941	41422941	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:41422941C>T	uc001rmm.1	+	23	3013	c.2900C>T	c.(2899-2901)CCC>CTC	p.P967L	CNTN1_uc001rmn.1_Missense_Mutation_p.P956L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	967	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GTCCCAATCCCCAGAGATGGA	0.443													40	54					0	0	0.008740	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966225	41966225	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:41966225C>T	uc010skn.1	+	10	1115	c.1047C>T	c.(1045-1047)AAC>AAT	p.N349N	PDZRN4_uc001rmq.3_Silent_p.N290N|PDZRN4_uc009zjz.2_Silent_p.N288N|PDZRN4_uc001rmr.2_Silent_p.N175N	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	548							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CATCCAACAACCATGAGAAGG	0.423													9	15					0	0	0.006214	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826141	43826141	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:43826141G>A	uc010skx.1	-	21	3062	c.3062C>T	c.(3061-3063)TCC>TTC	p.S1021F	ADAMTS20_uc001rno.1_Missense_Mutation_p.S175F|ADAMTS20_uc001rnp.1_Missense_Mutation_p.S175F	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1021	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACTGGGACAGGAAAATTCATT	0.393													18	31					0	0	0.004990	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458239	45458239	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:45458239G>A	uc001rol.2	-	1		c.956C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TTTCCACATGGAACATAGAAT	0.463													3	5					0	0	0.004672	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458531	45458531	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:45458531G>A	uc001rol.2	-	1		c.664C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TGGAGCCAATGGAACGAGTTT	0.493													7	21					0	0	0.003080	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458979	45458979	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:45458979C>T	uc001rol.2	-	1		c.216G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTTGTATTTCCCCAGCTCAT	0.433													3	14					0	0	0.004672	0	0
ARID2	196528	broad.mit.edu	37	12	46245027	46245027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:46245027C>T	uc001ros.1	+	15	3121	c.3121C>T	c.(3121-3123)CAA>TAA	p.Q1041*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q1041*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q497*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q668*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q375*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1041	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GATGCAAGTTCAACCTCAACA	0.512													36	48					0	0	0.006999	0	0
SLC38A4	55089	broad.mit.edu	37	12	47181798	47181798	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:47181798G>A	uc001rpi.2	-	5	626	c.227C>T	c.(226-228)TCC>TTC	p.S76F	SLC38A4_uc001rpj.2_Missense_Mutation_p.S76F|SLC38A4_uc009zkl.2_Missense_Mutation_p.S76F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	76	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CATTCCAAAGGAAGTGGTTCC	0.433													16	20					0	0	0.004007	0	0
HDAC7	51564	broad.mit.edu	37	12	48181866	48181866	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:48181866C>T	uc010slo.1	-	20	2512	c.2317G>A	c.(2317-2319)GAC>AAC	p.D773N	HDAC7_uc009zku.2_RNA|HDAC7_uc001rqe.2_Missense_Mutation_p.D207N|HDAC7_uc001rqj.3_Missense_Mutation_p.D736N|HDAC7_uc001rqk.3_Missense_Mutation_p.D756N|HDAC7_uc010slp.1_5'UTR	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	734	Histone deacetylase.				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		AAGTTGCCGTCGTCATGGCGA	0.567													23	28					0	0	0.012319	0	0
DDN	23109	broad.mit.edu	37	12	49391080	49391080	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:49391080G>A	uc001rsv.1	-	2	1597	c.1579C>T	c.(1579-1581)CGC>TGC	p.R527C	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	527	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						Tcgcccccgcggcccccgccg	0.567													4	10					0	0	0.009096	0	0
PRPF40B	25766	broad.mit.edu	37	12	50025214	50025214	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:50025214C>T	uc001rur.1	+	2	113	c.49C>T	c.(49-51)CCT>TCT	p.P17S	PRPF40B_uc001rup.1_Missense_Mutation_p.P39S|PRPF40B_uc001ruq.1_Missense_Mutation_p.P11S|PRPF40B_uc001rus.1_5'Flank	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	17	Pro-rich.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CCCACCCTTTCCTCCGATGGG	0.602													70	89					0	0	0.003610	0	0
GPD1	2819	broad.mit.edu	37	12	50501360	50501360	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:50501360C>T	uc001rvz.2	+	6	656	c.623C>T	c.(622-624)GCC>GTC	p.A208V	GPD1_uc001rwa.2_Missense_Mutation_p.A185V	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	208					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	AATGTAGTGGCCGTGGGGGCT	0.572													50	91					0	0	0.003610	0	0
LIMA1	51474	broad.mit.edu	37	12	50571449	50571449	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:50571449C>T	uc001rwj.3	-	11	1852	c.1678G>A	c.(1678-1680)GAC>AAC	p.D560N	LIMA1_uc001rwg.3_Missense_Mutation_p.D258N|LIMA1_uc001rwh.3_Missense_Mutation_p.D399N|LIMA1_uc001rwi.3_Missense_Mutation_p.D401N|LIMA1_uc001rwk.3_Missense_Mutation_p.D561N|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	560					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						CTGATTTCGTCTTCAGGAGGC	0.507													44	83					0	0	0.013114	0	0
CSRNP2	81566	broad.mit.edu	37	12	51458120	51458120	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:51458120G>T	uc001rxu.1	-	5	1339	c.1041C>A	c.(1039-1041)GCC>GCA	p.A347A		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	347					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGTCCAGGCTGGCACTAGAGC	0.582													29	47					1.13719e-10	1.22271e-10	0.008361	1	0
CSRNP2	81566	broad.mit.edu	37	12	51458139	51458139	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:51458139T>C	uc001rxu.1	-	5	1320	c.1022A>G	c.(1021-1023)GAT>GGT	p.D341G		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	341					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGCTGGAATCTTCTTCTGC	0.587													27	52					0	0	0.007291	0	0
KRT6B	3854	broad.mit.edu	37	12	52844254	52844254	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:52844254C>T	uc001sak.2	-	2	739	c.691G>A	c.(691-693)GAA>AAA	p.E231K		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	231	Coil 1B.|Rod.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		CGACCCCGTTCCCCCACGATG	0.567													54	136					0	0	0.003610	0	0
KRT6A	3853	broad.mit.edu	37	12	52881598	52881598	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:52881598G>A	uc001sam.2	-	9	1810	c.1601C>T	c.(1600-1602)GCC>GTC	p.A534V		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	534	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		ACCCCCAATGGCTCTGCCACT	0.587													40	64					0	0	0.013114	0	0
KRT76	51350	broad.mit.edu	37	12	53170560	53170560	+	Silent	SNP	G	A	A	rs146014128		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:53170560G>A	uc001sax.2	-	1	570	c.516C>T	c.(514-516)ATC>ATT	p.I172I		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	172	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TCTGGGGGTCGATCTCCACAT	0.498													27	41					0	0	0.009535	0	0
ITGB7	3695	broad.mit.edu	37	12	53594079	53594079	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:53594079G>A	uc009zmv.2	-	2	220	c.149C>T	c.(148-150)TCC>TTC	p.S50F	ITGB7_uc001scc.2_Missense_Mutation_p.S50F|ITGB7_uc010snz.1_RNA|ITGB7_uc010soa.1_Missense_Mutation_p.S50F	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	50	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						CTTCTGGCAGGAGGGGGCTGG	0.522													16	28					0	0	0.002299	0	0
OR6C6	283365	broad.mit.edu	37	12	55688381	55688381	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:55688381C>T	uc010sph.1	-	1	636	c.636G>A	c.(634-636)GTG>GTA	p.V212V		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						AAGAGAGAATCACTAATACCA	0.413													15	27					0	0	0.002450	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822755	56822755	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:56822755G>A	uc001slf.2	-	11	1384	c.1216C>T	c.(1216-1218)CGT>TGT	p.R406C	TIMELESS_uc001slg.2_Missense_Mutation_p.R405C	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	406					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TGGAAGGTACGGACACTGAGG	0.552													21	42					0	0	0.002299	0	0
RDH16	8608	broad.mit.edu	37	12	57348713	57348713	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:57348713C>T	uc001smi.3	-	2	721	c.549G>A	c.(547-549)GTG>GTA	p.V183V	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	183	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						AGAAGGCTTCCACGCCATACT	0.582													15	25					0	0	0.004007	0	0
STAT6	6778	broad.mit.edu	37	12	57493858	57493858	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:57493858G>A	uc009zpe.2	-	14	1779	c.1528C>T	c.(1528-1530)CGT>TGT	p.R510C	STAT6_uc009zpf.2_Missense_Mutation_p.R510C|STAT6_uc001sna.2_Missense_Mutation_p.R510C|STAT6_uc010srb.1_Missense_Mutation_p.R400C|STAT6_uc010src.1_Missense_Mutation_p.R400C|STAT6_uc010srd.1_Missense_Mutation_p.R400C|STAT6_uc009zpg.2_Missense_Mutation_p.R559C	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	510					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						GTGAAGCCACGGCCCAGCAGG	0.622													7	5					0	0	0.003080	0	0
STAT6	6778	broad.mit.edu	37	12	57499067	57499068	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:57499067_57499068GG>AA	uc009zpe.2	-	9	1118_1119	c.867_868CC>TT	c.(865-870)TTCCAG>TTTTAG	p.Q290*	STAT6_uc009zpf.2_Nonsense_Mutation_p.Q290*|STAT6_uc001sna.2_Nonsense_Mutation_p.Q290*|STAT6_uc010srb.1_Nonsense_Mutation_p.Q180*|STAT6_uc010src.1_Nonsense_Mutation_p.Q180*|STAT6_uc010srd.1_Nonsense_Mutation_p.Q180*|STAT6_uc009zpg.2_Nonsense_Mutation_p.Q339*	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	290					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						ACTCCAGCCTGGAACTTGGTCT	0.629													25	39					0	0	0.004672	0	0
LRP1	4035	broad.mit.edu	37	12	57550673	57550673	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:57550673A>G	uc001snd.2	+	10	1997	c.1531A>G	c.(1531-1533)AGC>GGC	p.S511G		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	511	EGF-like 3.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TTCCGGCTTCAGCCTGGGCAG	0.637													6	13					0	0	0.008291	0	0
C12orf56	115749	broad.mit.edu	37	12	64664335	64664335	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:64664335T>C	uc001ssa.3	-	10	1264	c.1264A>G	c.(1264-1266)AAC>GAC	p.N422D	uc001srx.2_Intron|C12orf56_uc001sry.2_Missense_Mutation_p.N164D|C12orf56_uc001srz.2_Missense_Mutation_p.N64D	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	585											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		TCTCTGTAGTTATTCCTAATA	0.418													5	6					0	0	0.001168	0	0
IRAK3	11213	broad.mit.edu	37	12	66605263	66605263	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:66605263C>T	uc001sth.2	+	5	576	c.474C>T	c.(472-474)ATC>ATT	p.I158I	IRAK3_uc010ssy.1_Silent_p.I97I	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	158					interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		TTCAAAATATCATAGAAGGAA	0.358													11	25					0	0	0.010729	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72057130	72057130	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:72057130T>C	uc001swo.2	-	1	620	c.261A>G	c.(259-261)TCA>TCG	p.S87S	ZFC3H1_uc010sts.1_Silent_p.S87S|ZFC3H1_uc001swp.2_Silent_p.S87S|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	87	Ser-rich.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCCGCGAGCGTGAGAAATTCC	0.652											OREG0021993	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	81					0	0	0.013114	0	0
TBC1D15	64786	broad.mit.edu	37	12	72266708	72266708	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:72266708G>A	uc001swu.2	+	3	205	c.196_splice	c.e3-1	p.D66_splice	TBC1D15_uc009zrv.2_Splice_Site|TBC1D15_uc010stt.1_Splice_Site_p.D52_splice|TBC1D15_uc001swv.2_Splice_Site_p.D66_splice|TBC1D15_uc001sww.2_Splice_Site	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1								protein binding|Rab GTPase activator activity				0						TCTTTCTCTAGGATGCCGAAG	0.294													48	75					0	0	0.003610	0	0
TRHDE	29953	broad.mit.edu	37	12	73046126	73046126	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:73046126C>T	uc001sxa.2	+	16	2595	c.2565C>T	c.(2563-2565)ATC>ATT	p.I855I		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	855	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTAGAGACATCGTATACTGTA	0.353													20	40					0	0	0.008871	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80203599	80203599	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:80203599G>A	uc001syz.2	-	10	1698	c.1431C>T	c.(1429-1431)TCC>TCT	p.S477S	PPP1R12A_uc010suc.1_Silent_p.S390S|PPP1R12A_uc001sza.2_Silent_p.S477S|PPP1R12A_uc010sud.1_Silent_p.S477S|PPP1R12A_uc001szb.2_Silent_p.S477S|PPP1R12A_uc001szc.2_Silent_p.S477S	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	477						contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						CCAAAGAGGAGGAAAGTCTGG	0.383													10	20					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	12	80770955	80770955	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:80770955G>A	uc009zsg.1	+	12	1048	c.447G>A	c.(445-447)AGG>AGA	p.R149R	uc001szd.2_Silent_p.R288R					RecName: Full=Uncharacterized protein C12orf64;																		CGGTCATAAGGAAACAGGACT	0.333													15	26					0	0	0.008871	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85449863	85449863	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:85449863C>T	uc001tac.2	+	8	1403	c.1292C>T	c.(1291-1293)TCA>TTA	p.S431L	LRRIQ1_uc001tab.1_Missense_Mutation_p.S431L|LRRIQ1_uc001taa.1_Missense_Mutation_p.S406L	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	431										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GATGAAAATTCAAAGAAGCAG	0.303													36	62					0	0	0.008740	0	0
ATP2B1	490	broad.mit.edu	37	12	89998001	89998001	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:89998001G>A	uc001tbh.2	-	15	2746	c.2565C>T	c.(2563-2565)TTC>TTT	p.F855F	ATP2B1_uc001tbg.2_Silent_p.F855F|ATP2B1_uc001tbf.2_Silent_p.F525F	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	855	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						GGAACTGAAGGAATTTTGAGA	0.383													13	26					0	0	0.001368	0	0
DCN	1634	broad.mit.edu	37	12	91545483	91545483	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:91545483T>C	uc001tbs.2	-	6	927	c.833A>G	c.(832-834)AAC>AGC	p.N278S	DCN_uc001tbo.2_Missense_Mutation_p.N169S|DCN_uc001tbp.2_Missense_Mutation_p.N131S|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.N278S|DCN_uc001tbu.2_Missense_Mutation_p.N278S	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	278	LRR 9.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						AAGCTTGTTGTTGTCCAAGTG	0.488													12	19					0	0	0.001855	0	0
TMCC3	57458	broad.mit.edu	37	12	94975610	94975610	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:94975610C>T	uc001tdj.2	-	2	901	c.783G>A	c.(781-783)ACG>ACA	p.T261T	TMCC3_uc001tdi.2_Silent_p.T230T	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	261						integral to membrane				ovary(1)|skin(1)	2						CCGAGCCTGACGTGCCACTCG	0.597													40	57					0	0	0.008740	0	0
NEDD1	121441	broad.mit.edu	37	12	97311490	97311490	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:97311490C>T	uc001teu.3	+	5	662	c.323C>T	c.(322-324)TCA>TTA	p.S108L	NEDD1_uc001tev.3_Missense_Mutation_p.S108L|NEDD1_uc010svc.1_Missense_Mutation_p.S19L|NEDD1_uc001tew.2_Missense_Mutation_p.S115L|NEDD1_uc001tex.2_Missense_Mutation_p.S19L	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	108	WD 3.				cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						GATTTAAAATCAAAAAGAGTT	0.279													52	113					0	0	0.003610	0	0
ANO4	121601	broad.mit.edu	37	12	101493412	101493412	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:101493412G>A	uc010svm.1	+	22	2635	c.2063G>A	c.(2062-2064)AGG>AAG	p.R688K	ANO4_uc001thw.2_Missense_Mutation_p.R653K|ANO4_uc001thx.2_Missense_Mutation_p.R688K|ANO4_uc001thy.2_Missense_Mutation_p.R208K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	688	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GGACCTGAAAGGAAAATAAGT	0.358										HNSCC(74;0.22)			21	29					0	0	0.012319	0	0
SLC5A8	160728	broad.mit.edu	37	12	101551071	101551071	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:101551071C>T	uc001thz.3	-	15	2209	c.1819G>A	c.(1819-1821)GGG>AGG	p.G607R		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	607	Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						AAACGAGTCCCATTGCTCTTG	0.368													14	23					0	0	0.004990	0	0
MYBPC1	4604	broad.mit.edu	37	12	102023306	102023306	+	Silent	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:102023306A>T	uc001tii.2	+	4	300	c.198A>T	c.(196-198)GGA>GGT	p.G66G	MYBPC1_uc001tif.1_Silent_p.G79G|MYBPC1_uc001tig.2_Silent_p.G91G|MYBPC1_uc010svq.1_Silent_p.G53G|MYBPC1_uc001tih.2_Silent_p.G91G|MYBPC1_uc001tij.2_Silent_p.G66G|MYBPC1_uc010svr.1_Silent_p.G66G|MYBPC1_uc010svs.1_Silent_p.G66G|MYBPC1_uc010svt.1_Silent_p.G54G|MYBPC1_uc010svu.1_Silent_p.G66G|MYBPC1_uc001tik.2_Silent_p.G40G	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	66					cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AACCTCAAGGAGGAACAGTGA	0.368													15	29					0	0	0.002450	0	0
STAB2	55576	broad.mit.edu	37	12	104015856	104015856	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:104015856G>A	uc001tjw.2	+	5	640	c.454G>A	c.(454-456)GAC>AAC	p.D152N		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	152	Extracellular (Potential).			D -> A (in Ref. 5; BAD18723).	angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AACCTGTGCTGACGACAACTT	0.473													17	37					0	0	0.008871	0	0
DAO	1610	broad.mit.edu	37	12	109294246	109294246	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:109294246G>A	uc001tnr.3	+	11	1132	c.979G>A	c.(979-981)GCC>ACC	p.A327T	DAO_uc001tnq.3_Missense_Mutation_p.A261T|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	327					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						CCTGGAGGCAGCCAAGCTCTT	0.567													32	51					0	0	0.012213	0	0
C12orf76	400073	broad.mit.edu	37	12	110495058	110495058	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:110495058G>A	uc001tqd.1	-	4	600	c.235C>T	c.(235-237)CCT>TCT	p.P79S	C12orf76_uc001tqe.1_RNA|C12orf76_uc010sxx.1_RNA|uc001tqf.1_Intron	NM_207435	NP_997318	Q8N812	CL076_HUMAN	hypothetical protein LOC400073	79										large_intestine(1)	1						AGCTCTGCAGGGAGGATGTGC	0.502													11	31					0	0	0.001368	0	0
ATP2A2	488	broad.mit.edu	37	12	110783854	110783854	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:110783854C>T	uc001tqk.3	+	19	3353	c.2790C>T	c.(2788-2790)ATC>ATT	p.I930I	ATP2A2_uc001tql.3_Silent_p.I930I|ATP2A2_uc010sxy.1_Silent_p.I903I|ATP2A2_uc001tqn.3_Silent_p.I7I|ATP2A2_uc009zvn.2_5'Flank	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	930	Helical; Name=9; (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GGGAGAACATCTGGCTCGTGG	0.597													31	62					0	0	0.012213	0	0
CUX2	23316	broad.mit.edu	37	12	111786114	111786114	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:111786114G>A	uc001tsa.1	+	22	4599	c.4446G>A	c.(4444-4446)CTG>CTA	p.L1482L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1482						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AGGAGGCCCTGGAGTGGGAGT	0.567													40	51					0	0	0.006999	0	0
RPH3A	22895	broad.mit.edu	37	12	113266161	113266162	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:113266161_113266162GG>AA	uc010syl.1	+	3	400_401	c.38_39GG>AA	c.(37-39)TGG>TAA	p.W13*	RPH3A_uc001ttz.2_Nonsense_Mutation_p.W13*|RPH3A_uc001tty.2_Nonsense_Mutation_p.W13*|RPH3A_uc009zwe.1_Nonsense_Mutation_p.W13*|RPH3A_uc010sym.1_Nonsense_Mutation_p.W13*	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	13					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		TCTAACCGTTGGATGTACCCCA	0.475													42	67					0	0	0.004672	0	0
CIT	11113	broad.mit.edu	37	12	120173010	120173010	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:120173010G>A	uc001txi.1	-	24	3038	c.2985C>T	c.(2983-2985)CGC>CGT	p.R995R	CIT_uc001txh.1_Silent_p.R529R|CIT_uc001txj.1_Silent_p.R1037R	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	995	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TGATCTCCCGGCGGAGATGGT	0.488													37	63					0	0	0.005524	0	0
HNF1A	6927	broad.mit.edu	37	12	121437150	121437150	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:121437150C>T	uc001tzg.2	+	8	1604	c.1581C>T	c.(1579-1581)ACC>ACT	p.T527T	HNF1A_uc010szn.1_Silent_p.T527T	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	527					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCACCGACACCACCAACCTGA	0.677									Hepatic_Adenoma_Familial_Clustering_of				58	221					0	0	0.003610	0	0
P2RX4	5025	broad.mit.edu	37	12	121660807	121660807	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:121660807C>G	uc001tzr.2	+	5	789	c.485C>G	c.(484-486)GCG>GGG	p.A162G	P2RX4_uc010szr.1_Intron|P2RX4_uc010szs.1_Intron|P2RX4_uc009zxc.2_Intron|P2RX4_uc001tzs.2_Missense_Mutation_p.A178G|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Missense_Mutation_p.A61G	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	162	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGTGAGGTGGCGGCCTGGTGC	0.522													53	196					0	0	0.003610	0	0
KDM2B	84678	broad.mit.edu	37	12	121880145	121880145	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:121880145G>A	uc001uat.2	-	19	3203	c.3099C>T	c.(3097-3099)CCC>CCT	p.P1033P	KDM2B_uc001uaq.2_Silent_p.P473P|KDM2B_uc010szy.1_Silent_p.P473P|KDM2B_uc001uar.2_Silent_p.P624P|KDM2B_uc001uas.2_Silent_p.P964P|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Silent_p.P281P|KDM2B_uc010szx.1_Silent_p.P281P|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1033	Pro-rich.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GGATACACTTGGGCGGGGACA	0.721													3	17					0	0	0.004672	0	0
ABCB9	23457	broad.mit.edu	37	12	123444367	123444367	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:123444367G>A	uc001udm.3	-	2	726	c.416C>T	c.(415-417)ACC>ATC	p.T139I	ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Missense_Mutation_p.T139I|ABCB9_uc010taj.1_Missense_Mutation_p.T139I|ABCB9_uc001udp.2_Missense_Mutation_p.T139I|ABCB9_uc001udq.2_5'UTR|ABCB9_uc001udr.2_Missense_Mutation_p.T139I	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	139					positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		TGGCCGCACGGTGGACAGCAG	0.716													11	21					0	0	0.001368	0	0
SBNO1	55206	broad.mit.edu	37	12	123815827	123815827	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:123815827G>A	uc010tap.1	-	7	1005	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	SBNO1_uc010tao.1_Silent_p.I334I|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Silent_p.I335I|SBNO1_uc001ueu.2_Silent_p.I334I|SBNO1_uc001uev.2_Silent_p.I333I|SBNO1_uc009zxy.1_Silent_p.I300I	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	335							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		AATTTTCATAGATGATTCCTG	0.328													38	47					0	0	0.006230	0	0
TCTN2	79867	broad.mit.edu	37	12	124171515	124171515	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:124171515C>T	uc001ufp.2	+	6	825	c.697C>T	c.(697-699)CCC>TCC	p.P233S	TCTN2_uc009zya.2_Missense_Mutation_p.P232S	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	233	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		CGATTGGTTTCCCTTTCTGTG	0.567													106	323					0	0	0.003610	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834048	125834048	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:125834048C>T	uc001uhe.1	+	2	111	c.103C>T	c.(103-105)CCT>TCT	p.P35S		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	35	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TTCCTCGCTCCCTGCTTACCT	0.478													66	164					0	0	0.003610	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184679	130184679	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:130184679G>A	uc009zyl.1	-	2	972	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	215	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CTGGTCCACGGACTTCCTCCT	0.687													42	26					0	0	0.007835	0	0
LOC284232	284232	broad.mit.edu	37	13	19414281	19414281	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:19414281C>T	uc010tcj.1	-	1		c.31829G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TCTTCATTTTCTTGTTGTAAG	0.279													5	11					0	0	0.001168	0	0
LOC284232	284232	broad.mit.edu	37	13	19433112	19433112	+	RNA	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:19433112A>C	uc010tcj.1	-	1		c.12998T>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AAAAGGAAAGAATAATCTGGG	0.299													2	15					0	0	0.004672	0	0
SACS	26278	broad.mit.edu	37	13	23912516	23912516	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:23912516G>A	uc001uon.2	-	10	6088	c.5499C>T	c.(5497-5499)TCC>TCT	p.S1833S	SACS_uc001uoo.2_Silent_p.S1686S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1833					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TCTCACTCAGGGAAAACTTCA	0.478													38	31					0	0	0.006999	0	0
PAN3	255967	broad.mit.edu	37	13	28771364	28771364	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:28771364C>T	uc001urz.2	+	4	303	c.295C>T	c.(295-297)CCG>TCG	p.P99S	PAN3_uc010tdo.1_Missense_Mutation_p.P245S|PAN3_uc001ury.2_5'UTR|PAN3_uc001urx.2_Intron	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	245	Interaction with polyadenylate-binding protein.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		GAGGCTAGTTCCGATGGGATC	0.483													13	8					0	0	0.004007	0	0
SLC46A3	283537	broad.mit.edu	37	13	29287443	29287443	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:29287443G>A	uc001usi.2	-	2	1404	c.434C>T	c.(433-435)ACC>ATC	p.T145I	SLC46A3_uc001usg.2_Missense_Mutation_p.T70I|SLC46A3_uc001usj.2_Missense_Mutation_p.T145I|SLC46A3_uc001ush.2_Missense_Mutation_p.T145I|SLC46A3_uc001usk.2_Missense_Mutation_p.T70I	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	145	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		CCAAAATGTGGTATAATTGCC	0.383													12	15					0	0	0.003163	0	0
FRY	10129	broad.mit.edu	37	13	32760500	32760501	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:32760500_32760501GG>AA	uc001utx.2	+	27	3919_3920	c.3423_3424GG>AA	c.(3421-3426)CTGGAT>CTAAAT	p.D1142N	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCACTCCTCTGGATCGTTACAG	0.436													28	21					0	0	0.004672	0	0
STARD13	90627	broad.mit.edu	37	13	33701617	33701617	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:33701617G>A	uc001uuw.2	-	6	1941	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I	STARD13_uc001uuu.2_Silent_p.I597I|STARD13_uc001uuv.2_Silent_p.I487I|STARD13_uc001uux.2_Silent_p.I570I|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.I590I	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	605					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TCTGGCTGCTGATGTGGGGCG	0.627													4	4					0	0	0.009096	0	0
TPTE2P3	220115	broad.mit.edu	37	13	53096930	53096930	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:53096930G>A	uc001vgw.2	+	11		c.1307G>A				NR_002793				Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene, mRNA (cDNA clone IMAGE:5298506), with apparent retained intron.												0						TTTGTAGAAGGGTAAGTTTGA	0.219													8	10					0	0	0.008291	0	0
MYCBP2	23077	broad.mit.edu	37	13	77655567	77655567	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:77655567G>A	uc001vkf.2	-	66	11390	c.11299C>T	c.(11299-11301)CTT>TTT	p.L3767F	MYCBP2_uc010aev.2_Missense_Mutation_p.L3171F|MYCBP2_uc001vke.2_Missense_Mutation_p.L387F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3767	DOC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CTTACCCCAAGATCTCGGGAA	0.383													46	23					0	0	0.003610	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484834	97484834	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:97484834C>T	uc001vmw.2	+	2	822	c.798C>T	c.(796-798)ACC>ACT	p.T266T		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	266	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					CTTGGAAAACCTCTCTTCATA	0.507													8	14					0	0	0.004482	0	0
GPR18	2841	broad.mit.edu	37	13	99907627	99907627	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:99907627G>A	uc001voe.3	-	3	1001	c.500C>T	c.(499-501)TCC>TTC	p.S167F	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.S167F	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	167	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	GGCGGGAGTGGAGTCTTTATC	0.488													31	19					0	0	0.004878	0	0
RASA3	22821	broad.mit.edu	37	13	114773066	114773066	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr13:114773066G>A	uc001vui.2	-	18	1816	c.1685C>T	c.(1684-1686)TCG>TTG	p.S562L	RASA3_uc010tkk.1_Missense_Mutation_p.S530L|RASA3_uc001vuj.2_Missense_Mutation_p.S179L	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	562					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CCCCGAGGACGAAATCAGATC	0.408													23	10					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	14	19856895	19856895	+	RNA	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:19856895A>G	uc001vvq.1	-	5		c.635T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		AATTAGCCCAACTTCTGTGCT	0.368													6	44					0	0	0.010729	0	0
OR4M1	441670	broad.mit.edu	37	14	20249284	20249284	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:20249284C>T	uc010tku.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GACTCATTTTCCCTAGATAAA	0.418													27	59					0	0	0.004656	0	0
OR4K2	390431	broad.mit.edu	37	14	20344738	20344738	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:20344738C>T	uc001vwh.1	+	1	312	c.312C>T	c.(310-312)CTC>CTT	p.L104L		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TATTCTTTCTCCACCTTTTCA	0.428													26	49					0	0	0.007291	0	0
OR4K1	79544	broad.mit.edu	37	14	20404152	20404152	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:20404152G>A	uc001vwj.1	+	1	327	c.327G>A	c.(325-327)GGG>GGA	p.G109G		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTTTTGTTGGGAGTGAGATGA	0.433													27	61					0	0	0.008361	0	0
TEP1	7011	broad.mit.edu	37	14	20846647	20846647	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:20846647G>A	uc001vxe.2	-	38	5440	c.5400C>T	c.(5398-5400)CCC>CCT	p.P1800P	TEP1_uc010ahk.2_Silent_p.P1143P|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.P1692P|TEP1_uc010tlh.1_Silent_p.P138P	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1800	WD 5.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TCAGGGACTTGGGGTAGGTGT	0.582													10	31					0	0	0.001368	0	0
TPPP2	122664	broad.mit.edu	37	14	21499185	21499185	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:21499185G>A	uc001vzh.2	+	3	376	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	NDRG2_uc010tll.1_Intron	NM_173846	NP_776245	P59282	TPPP2_HUMAN	tubulin polymerization-promoting protein family	63						cytoplasm					0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		AAGAACGCCCGAACCATCACG	0.483													21	37					0	0	0.003954	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793412	21793412	+	Missense_Mutation	SNP	G	A	A	rs61751268		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:21793412G>A	uc001wag.2	+	15	2237	c.2237G>A	c.(2236-2238)GGG>GAG	p.G746E	RPGRIP1_uc001wah.2_Missense_Mutation_p.G388E|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.G221E|RPGRIP1_uc010aim.2_Missense_Mutation_p.G129E|RPGRIP1_uc001wal.2_Missense_Mutation_p.G105E|RPGRIP1_uc001wam.2_Missense_Mutation_p.G63E	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	746			G -> E (in LCA6).		response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GAAGAGTTCGGGGTTCTAGAG	0.493													5	16					0	0	0.003080	0	0
SALL2	6297	broad.mit.edu	37	14	21993392	21993392	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:21993392G>A	uc001wbe.2	-	2	752	c.470C>T	c.(469-471)ACC>ATC	p.T157I	SALL2_uc010tly.1_Missense_Mutation_p.T155I|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	157							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GGGTGCAGGGGTCGATTCTGG	0.647													26	26					0	0	0.003954	0	0
MYH6	4624	broad.mit.edu	37	14	23863359	23863359	+	Missense_Mutation	SNP	G	A	A	rs147015593		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:23863359G>A	uc001wjv.2	-	21	2670	c.2603C>T	c.(2602-2604)TCC>TTC	p.S868F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	868	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle	p.S868F(1)		pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCGAGCCTCGGACTTCTCCAG	0.572													40	38					0	0	0.009718	0	0
MYH7	4625	broad.mit.edu	37	14	23894188	23894188	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:23894188C>T	uc001wjx.2	-	22	2575	c.2469G>A	c.(2467-2469)GGG>GGA	p.G823G		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	823			G -> E (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		AATTCTTGACCCCCATGAAGG	0.547													19	48					0	0	0.007413	0	0
CPNE6	9362	broad.mit.edu	37	14	24546586	24546586	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:24546586G>A	uc001wll.2	+	15	1622	c.1523G>A	c.(1522-1524)CGA>CAA	p.R508Q	CPNE6_uc010tnv.1_Missense_Mutation_p.R563Q|CPNE6_uc001wlm.2_Missense_Mutation_p.R333Q|CPNE6_uc001wln.2_Missense_Mutation_p.R176Q	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	508	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		GTGCCCTTCCGAGACTTCAAG	0.617													25	44					0	0	0.006320	0	0
DHRS1	115817	broad.mit.edu	37	14	24766036	24766036	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:24766036C>T	uc001woj.1	-	3	471	c.202G>A	c.(202-204)GAG>AAG	p.E68K	DHRS1_uc010aln.1_5'Flank|DHRS1_uc001wok.2_Missense_Mutation_p.E68K	NM_138452	NP_612461	Q96LJ7	DHRS1_HUMAN	dehydrogenase/reductase (SDR family) member 1	68						endoplasmic reticulum	binding|oxidoreductase activity				0				GBM - Glioblastoma multiforme(265;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(311;0.0442)		ACTTCACTCTCCTGGCTTGAA	0.547											OREG0022622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	38					0	0	0.008871	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884172	24884172	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:24884172G>A	uc001wpf.3	+	9	3535	c.3217G>A	c.(3217-3219)GCT>ACT	p.A1073T		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1073					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GGATGGAAAGGCTCCCTGCCA	0.637													34	69					0	0	0.003271	0	0
BAZ1A	11177	broad.mit.edu	37	14	35222877	35222877	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:35222877G>A	uc001wsk.2	-	27	5076	c.4508C>T	c.(4507-4509)TCG>TTG	p.S1503L	BAZ1A_uc001wsl.2_Missense_Mutation_p.S1471L	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1503	Bromo.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		AAAGCAGTTCGAAAACATTAA	0.333													8	29					0	0	0.003080	0	0
FSCB	84075	broad.mit.edu	37	14	44975203	44975203	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:44975203G>A	uc001wvn.2	-	1	1297	c.988C>T	c.(988-990)CCT>TCT	p.P330S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	330	Pro-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		ATTTCAGCAGGAAACTCCACT	0.512													29	57					0	0	0.006320	0	0
PYGL	5836	broad.mit.edu	37	14	51378932	51378932	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:51378932C>G	uc001wyu.2	-	14	1837	c.1710G>C	c.(1708-1710)AGG>AGC	p.R570S	PYGL_uc010tqq.1_Missense_Mutation_p.R536S|PYGL_uc001wyv.2_Missense_Mutation_p.R244S	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	570				R -> S (in Ref. 2; AAC17450).	glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ACTCATGTATCCTCTTCACCT	0.478													8	139					0	0	0.004482	0	0
FERMT2	10979	broad.mit.edu	37	14	53347814	53347814	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:53347814C>T	uc001xad.2	-	6	850	c.795G>A	c.(793-795)AAG>AAA	p.K265K	FERMT2_uc001xac.2_Silent_p.K265K|FERMT2_uc001xae.2_Silent_p.K265K|FERMT2_uc001xaf.2_Silent_p.K265K	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	265	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					CCTCATTTTCCTTCACATCTT	0.378													15	15					0	0	0.006122	0	0
GPHB5	122876	broad.mit.edu	37	14	63784459	63784459	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:63784459G>A	uc010apu.2	-	1	105	c.105C>T	c.(103-105)GGC>GGT	p.G35G	GPHB5_uc001xgc.2_Silent_p.G25G	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	35						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		TCACGGCACAGCCCACAAAGG	0.627													14	41					0	0	0.001855	0	0
SPTB	6710	broad.mit.edu	37	14	65260452	65260452	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:65260452G>A	uc001xht.2	-	13	1983	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	SPTB_uc001xhr.2_Silent_p.F643F|SPTB_uc001xhs.2_Silent_p.F643F|SPTB_uc001xhu.2_Silent_p.F643F	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	643	Spectrin 4.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCATCTCCCAGAAGAACTTCC	0.542													18	40					0	0	0.007413	0	0
ACTN1	87	broad.mit.edu	37	14	69341639	69341639	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:69341639G>A	uc001xkl.2	-	21	2926	c.2616C>T	c.(2614-2616)TCC>TCT	p.S872S	ACTN1_uc001xkk.2_Silent_p.S468S|ACTN1_uc010ttb.1_Silent_p.S802S|ACTN1_uc001xkm.2_Silent_p.S894S|ACTN1_uc001xkn.2_Silent_p.S867S	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	872					focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CACCTGGCACGGAGTCGGGGC	0.667													11	23					0	0	0.010729	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712868	70712868	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:70712868G>A	uc010ttg.1	-	1	1651	c.1000C>T	c.(1000-1002)CAA>TAA	p.Q334*		NR_003951				SubName: Full=ADAM21-like protein;												0						CACCTCTTTTGATAGCAGTAG	0.433													17	20					0	0	0.010504	0	0
PAPLN	89932	broad.mit.edu	37	14	73733306	73733306	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:73733306G>A	uc010ttx.1	+	23	3524	c.3361G>A	c.(3361-3363)GAC>AAC	p.D1121N	PAPLN_uc001xnw.3_Missense_Mutation_p.D1094N|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_Intron|PAPLN_uc010tty.1_Missense_Mutation_p.D1105N|PAPLN_uc010arm.2_Missense_Mutation_p.D320N|PAPLN_uc010arn.2_Intron	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1121	Ig-like C2-type 2.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCAGGACCGAGACCAGCGATG	0.577													21	30					0	0	0.008871	0	0
C14orf43	91748	broad.mit.edu	37	14	74193623	74193623	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:74193623G>A	uc001xot.2	-	6	2998	c.2215C>T	c.(2215-2217)CGT>TGT	p.R739C	C14orf43_uc001xos.2_Missense_Mutation_p.R4C|C14orf43_uc001xou.2_Missense_Mutation_p.R739C|C14orf43_uc010tud.1_Missense_Mutation_p.R739C|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	739	ELM2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GCCAGGGCACGGTCCCTCATC	0.622													16	29					0	0	0.003163	0	0
PROX2	283571	broad.mit.edu	37	14	75329969	75329969	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:75329969C>T	uc001xqr.1	-	1	569	c.569G>A	c.(568-570)GGT>GAT	p.G190D	PROX2_uc001xqq.1_Missense_Mutation_p.G116D	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	190					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		CTGGTGGTCACCGTCCACAAC	0.602													11	29					0	0	0.010729	0	0
ISM2	145501	broad.mit.edu	37	14	77948836	77948836	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:77948836C>T	uc001xtz.2	-	4	876	c.802G>A	c.(802-804)GAA>AAA	p.E268K	ISM2_uc001xua.2_Intron|ISM2_uc001xty.2_Missense_Mutation_p.E180K|ISM2_uc010tvl.1_Missense_Mutation_p.E187K	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	268						extracellular region				skin(1)	1						tcctccttttcctcccccttc	0.303													28	27					0	0	0.004656	0	0
CCDC88C	440193	broad.mit.edu	37	14	91772235	91772235	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:91772235C>T	uc010aty.2	-	19	3330	c.3231G>A	c.(3229-3231)AAG>AAA	p.K1077K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1077	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCAGCTGTTCCTTTAGCAGCT	0.537													12	26					0	0	0.001855	0	0
CATSPERB	79820	broad.mit.edu	37	14	92047331	92047331	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:92047331G>A	uc001xzs.1	-	27	3393	c.3253C>T	c.(3253-3255)CCG>TCG	p.P1085S	CATSPERB_uc010aub.1_Missense_Mutation_p.P607S	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	1085					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GTCCTCCACGGATGGATGCCT	0.428													19	51					0	0	0.007413	0	0
FBLN5	10516	broad.mit.edu	37	14	92336646	92336646	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:92336646G>A	uc001xzx.3	-	11	1742	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	TC2N_uc001xzv.3_5'Flank|FBLN5_uc010aud.2_Silent_p.I428I|FBLN5_uc010aue.2_Silent_p.I464I|FBLN5_uc001xzw.2_RNA	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	423					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TGTTGACAGTGATCATTTCCA	0.577													52	99					0	0	0.003610	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102482416	102482417	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:102482416_102482417AC>TT	uc001yks.2	+	36	7630_7631	c.7466_7467AC>TT	c.(7465-7467)TAC>TTT	p.Y2489F	DYNC1H1_uc001ykt.1_5'UTR	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2489					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CTGGAGCGCTACATTCAGGTCA	0.614													4	6					0	0	0.004672	0	0
AKT1	207	broad.mit.edu	37	14	105241449	105241449	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:105241449G>A	uc001ypk.2	-	6	1085	c.531C>T	c.(529-531)GCC>GCT	p.A177A	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.A177A|AKT1_uc010axa.2_Silent_p.A177A|AKT1_uc001ypm.2_Silent_p.A177A|AKT1_uc001ypn.2_Silent_p.A177A|AKT1_uc010tyk.1_Silent_p.A115A	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	177	Protein kinase.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	GGATCTTCATGGCGTAGTAGC	0.612		1	Mis		breast|colorectal|ovarian|NSCLC								25	66					0	0	0.003954	0	0
ADAM6	8755	broad.mit.edu	37	14	106110225	106110225	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:106110225C>T	uc010tyt.1	-	3642		c.61026G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						TCCGGGAGATCATGAGGGTGT	0.612													41	60					0	0	0.007835	0	0
ADAM6	8755	broad.mit.edu	37	14	106354439	106354439	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:106354439C>T	uc010tyt.1	-	3090		c.49317_splice	c.e3090-1		KIAA0125_uc001ysq.2_5'Flank|KIAA0125_uc001ysr.2_5'Flank					Parts of antibodies, mostly variable regions.												0						AATATGCTCACAGTGACACGA	0.577													9	17					0	0	0.008291	0	0
ADAM6	8755	broad.mit.edu	37	14	106610537	106610537	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:106610537C>T	uc010tyt.1	-	1167		c.26294G>A								Parts of antibodies, mostly variable regions.												0						AAAGTGAATCCAGAGGCTGCA	0.582													50	75					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106993982	106993982	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:106993982C>T	uc010tyt.1	-	187		c.8465G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.537													85	122					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107048691	107048691	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr14:107048691G>A	uc010tyt.1	-	144		c.6899C>T								Parts of antibodies, mostly variable regions.												0						GTAATACACGGCCGTGTCCTC	0.562													85	107					0	0	0.003610	0	0
CYFIP1	23191	broad.mit.edu	37	15	22960808	22960808	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:22960808C>T	uc001yus.2	+	18	2105	c.2001C>T	c.(1999-2001)TCC>TCT	p.S667S	CYFIP1_uc001yut.2_Silent_p.S667S|CYFIP1_uc010aya.1_Silent_p.S695S|CYFIP1_uc001yuu.2_Silent_p.S236S	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	667					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		TGCTCTACTCCCTGGACCTGT	0.602													10	23					0	0	0.006214	0	0
SNRPN	6638	broad.mit.edu	37	15	25223433	25223433	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:25223433C>T	uc001ywp.1	+	12	1543	c.653C>T	c.(652-654)CCG>CTG	p.P218L	SNRPN_uc001ywq.1_Missense_Mutation_p.P218L|SNRPN_uc001ywr.1_Missense_Mutation_p.P218L|SNRPN_uc001yws.1_Missense_Mutation_p.P218L|SNRPN_uc001ywt.1_Missense_Mutation_p.P218L|SNRPN_uc001ywv.1_Missense_Mutation_p.P221L|SNRPN_uc001yww.1_Missense_Mutation_p.P218L|SNRPN_uc001ywx.1_Missense_Mutation_p.P218L|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	218	Repeat-rich region.|				RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		ATGCCGCCTCCGGGAATGAGA	0.567									Prader-Willi_syndrome				59	105					0	0	0.003610	0	0
APBA2	321	broad.mit.edu	37	15	29346605	29346605	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:29346605C>T	uc001zck.2	+	3	725	c.518C>T	c.(517-519)TCC>TTC	p.S173F	APBA2_uc010azj.2_Missense_Mutation_p.S173F|APBA2_uc010uat.1_Missense_Mutation_p.S173F|APBA2_uc001zcl.2_Missense_Mutation_p.S173F|APBA2_uc010uas.1_Missense_Mutation_p.S173F	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	173				DEPSVLEAHDQEEDGHYCASKEGYQDYYPEEANGNTGASPY RLRR -> MSPPSLRPMTRKKMVTMCQQRGLPGLLPRGGQR EHRRLPLPPEA (in Ref. 1; AAC39767).	nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		GATGAGCCCTCCGTCCTTGAG	0.652													9	24					0	0	0.006214	0	0
OTUD7A	161725	broad.mit.edu	37	15	31776364	31776365	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:31776364_31776365GG>AA	uc001zfq.2	-	11	2006_2007	c.1913_1914CC>TT	c.(1912-1914)GCC>GTT	p.A638V	OTUD7A_uc001zfr.2_Missense_Mutation_p.A645V	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	638						cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		GCAGCAGGCCGGCGAAGATGAA	0.668													4	20					0	0	0.004672	0	0
PGBD4	161779	broad.mit.edu	37	15	34396489	34396489	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:34396489A>G	uc001zho.2	+	1	2216	c.1757A>G	c.(1756-1758)TAA>TGA	p.*586*	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	586											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		AAAAATTATTAAATACCGATc	0.204													10	19					0	0	0.001368	0	0
C15orf23	90417	broad.mit.edu	37	15	40675049	40675049	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:40675049G>A	uc001zll.2	+	1	128	c.13G>A	c.(13-15)GAA>AAA	p.E5K	C15orf23_uc010ucp.1_Missense_Mutation_p.E5K|C15orf23_uc001zlo.2_Missense_Mutation_p.E5K|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	5						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GGCGGCTCCCGAAGCCCCGCC	0.582													13	13					0	0	0.001855	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567													23	30					0	0	0.002780	0	0
BAHD1	22893	broad.mit.edu	37	15	40758311	40758311	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:40758311C>T	uc001zlu.2	+	7	2396	c.2325C>T	c.(2323-2325)ATC>ATT	p.I775I	BAHD1_uc001zlt.2_Silent_p.I774I|BAHD1_uc010bbp.1_Silent_p.I771I|BAHD1_uc001zlv.2_Silent_p.I772I	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	775	BAH.				heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		ACGGGCGCATCCTTAAGAACC	0.617													38	77					0	0	0.006230	0	0
SPINT1	6692	broad.mit.edu	37	15	41145988	41145988	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:41145988C>T	uc001zna.2	+	5	1026	c.822C>T	c.(820-822)ATC>ATT	p.I274I	SPINT1_uc001znb.2_Silent_p.I274I|SPINT1_uc001znc.2_Silent_p.I274I|SPINT1_uc010ucs.1_Silent_p.I274I	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	274	BPTI/Kunitz inhibitor 1.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CGGAGCAGATCTGCAAGAGTT	0.562													53	81					0	0	0.003610	0	0
NDUFAF1	51103	broad.mit.edu	37	15	41680721	41680721	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:41680721C>T	uc001znx.2	-	4	1142	c.760_splice	c.e4-1	p.I254_splice	NDUFAF1_uc010bcf.2_Splice_Site	NM_016013	NP_057097	Q9Y375	CIA30_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha						mitochondrial electron transport, NADH to ubiquinone|protein complex assembly	mitochondrial respiratory chain complex I	unfolded protein binding			ovary(1)	1		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;8e-17)|GBM - Glioblastoma multiforme(113;1.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.114)		AAAAAGGAATCTGAAAGAAGA	0.323													12	35					0	0	0.001368	0	0
RPAP1	26015	broad.mit.edu	37	15	41815067	41815067	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:41815067G>A	uc001zod.2	-	19	2762	c.2638C>T	c.(2638-2640)CCC>TCC	p.P880S	RPAP1_uc001zoc.2_Intron	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	880	Leu-rich.					nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTGAGACGGGGGCAGCCTCCC	0.632													14	17					0	0	0.002450	0	0
SPTBN5	51332	broad.mit.edu	37	15	42178457	42178457	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:42178457C>T	uc001zos.2	-	7	1224	c.891G>A	c.(889-891)CGG>CGA	p.R297R		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	332	Spectrin 1.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CTGGAAAATCCCGCGCCTCCA	0.627													6	22					0	0	0.003080	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434869	42434869	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:42434869G>A	uc001zoz.2	-	19	2249	c.2186C>T	c.(2185-2187)CCC>CTC	p.P729L	PLA2G4F_uc010bcq.2_Missense_Mutation_p.P26L|PLA2G4F_uc001zoy.2_Missense_Mutation_p.P361L|PLA2G4F_uc010bcr.2_Missense_Mutation_p.P480L|PLA2G4F_uc001zpa.2_Missense_Mutation_p.P480L|PLA2G4F_uc010bcs.2_Missense_Mutation_p.P516L	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	729	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GCTAGGGAAGGGGATTCCTCG	0.607													20	32					0	0	0.012319	0	0
TP53BP1	7158	broad.mit.edu	37	15	43748789	43748789	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:43748789G>A	uc001zrs.2	-	12	2150	c.2002C>T	c.(2002-2004)CCT>TCT	p.P668S	TP53BP1_uc010udp.1_Missense_Mutation_p.P668S|TP53BP1_uc001zrq.3_Missense_Mutation_p.P673S|TP53BP1_uc001zrr.3_Missense_Mutation_p.P673S|TP53BP1_uc010udq.1_Missense_Mutation_p.P673S	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	668					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GGTGTCTCAGGGATTTCTTCC	0.458								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					40	54					0	0	0.006999	0	0
DUOX2	50506	broad.mit.edu	37	15	45396185	45396185	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:45396185G>A	uc010bea.2	-	20	2830	c.2627C>T	c.(2626-2628)TCC>TTC	p.S876F	DUOX2_uc001zun.2_Missense_Mutation_p.S876F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	876	Cytoplasmic (Potential).|2 (Potential).|EF-hand 2.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TTCGTCCTTGGAGAGGAAGCC	0.483													21	24					0	0	0.002299	0	0
C15orf33	196951	broad.mit.edu	37	15	49882096	49882096	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:49882096C>T	uc001zxl.2	-	4	508	c.214G>A	c.(214-216)GAA>AAA	p.E72K	C15orf33_uc001zxm.2_Missense_Mutation_p.E72K	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	72										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GGAACATTTTCCCATAGGTGT	0.308													25	34					0	0	0.003330	0	0
TRPM7	54822	broad.mit.edu	37	15	50905939	50905939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:50905939G>A	uc001zyt.3	-	15	1999	c.1735C>T	c.(1735-1737)CAT>TAT	p.H579Y	TRPM7_uc010bew.1_Missense_Mutation_p.H579Y|TRPM7_uc001zyu.2_Missense_Mutation_p.H137Y	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	579	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TTAATGAAATGGTTATGCCTC	0.363													8	7					0	0	0.003080	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350476	51350476	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:51350476C>T	uc001zyy.2	-	3	581	c.481G>A	c.(481-483)GAA>AAA	p.E161K		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	161											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		TTGTGGGCTTCCTTCTTGTTG	0.463													62	126					0	0	0.003610	0	0
DMXL2	23312	broad.mit.edu	37	15	51829948	51829948	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:51829948G>A	uc002abf.2	-	11	1579	c.1354C>T	c.(1354-1356)CTG>TTG	p.L452L	DMXL2_uc010ufy.1_Silent_p.L452L|DMXL2_uc010bfa.2_Silent_p.L452L	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	452						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCTCTATCCAGGGATAAATCT	0.333													7	23					0	0	0.003080	0	0
UNC13C	440279	broad.mit.edu	37	15	54914599	54914599	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:54914599C>T	uc002ack.2	+	29	6181	c.6181C>T	c.(6181-6183)CAT>TAT	p.H2061Y	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2061	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AACGGGAGATCATAAAGTCAC	0.438													18	37					0	0	0.008871	0	0
ADAM10	102	broad.mit.edu	37	15	59009855	59009855	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:59009855G>A	uc002afd.1	-	2	571	c.127C>T	c.(127-129)CAC>TAC	p.H43Y	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Missense_Mutation_p.H43Y	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	43	Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		TGTTTTTGGTGTAATGAATCC	0.333													9	16					0	0	0.004482	0	0
VPS13C	54832	broad.mit.edu	37	15	62228933	62228933	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:62228933T>A	uc002agz.2	-	48	5692	c.5618A>T	c.(5617-5619)GAT>GTT	p.D1873V	VPS13C_uc002aha.2_Missense_Mutation_p.D1830V|VPS13C_uc002ahb.1_Missense_Mutation_p.D1873V|VPS13C_uc002ahc.1_Missense_Mutation_p.D1830V	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1873					protein localization					ovary(2)	2						TGTCAAGTCATCTTCACTGAG	0.353													15	15					0	0	0.006122	0	0
CILP	8483	broad.mit.edu	37	15	65490345	65490345	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:65490345C>T	uc002aon.2	-	9	2460	c.2279G>A	c.(2278-2280)CGG>CAG	p.R760Q		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	760					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CCTCTCACTCCGGTAGGCCCT	0.547													71	121					0	0	0.003610	0	0
MEGF11	84465	broad.mit.edu	37	15	66206298	66206298	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:66206298C>T	uc002apm.2	-	20	2628	c.2487G>A	c.(2485-2487)ATG>ATA	p.M829I	MEGF11_uc002apl.2_Missense_Mutation_p.M754I|MEGF11_uc002apn.1_Missense_Mutation_p.M829I	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	829						basolateral plasma membrane|integral to membrane				pancreas(1)	1						TCAGCTCCTCCATCATGAGGG	0.612													10	26					0	0	0.008291	0	0
CLN6	54982	broad.mit.edu	37	15	68500587	68500587	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:68500587C>T	uc002arf.2	-	7	985	c.827G>A	c.(826-828)TGG>TAG	p.W276*	CALML4_uc002arb.2_5'Flank|CALML4_uc002arc.2_5'Flank|CALML4_uc002ard.2_5'Flank|CALML4_uc002are.2_5'Flank|CALML4_uc010bhz.2_5'Flank|CLN6_uc010ujy.1_Nonsense_Mutation_p.W147*|CLN6_uc010ujz.1_Nonsense_Mutation_p.W308*	NM_017882	NP_060352	Q9NWW5	CLN6_HUMAN	CLN6 protein	276	Helical; (Potential).				cell death|cholesterol metabolic process|ganglioside metabolic process|glycosaminoglycan metabolic process|lysosomal lumen acidification|positive regulation of proteolysis|protein catabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	protein homodimerization activity				0						CCAGGCGACCCAGAGCGCCAC	0.602													30	66					0	0	0.002836	0	0
CCDC33	80125	broad.mit.edu	37	15	74588137	74588137	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:74588137C>T	uc002axo.2	+	11	1532	c.1138C>T	c.(1138-1140)CCT>TCT	p.P380S	CCDC33_uc002axp.2_Missense_Mutation_p.P202S	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	583							protein binding			ovary(3)|skin(2)	5						CAAGGCTCTTCCTACCTTGGA	0.418													22	53					0	0	0.003954	0	0
CCDC33	80125	broad.mit.edu	37	15	74622662	74622662	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:74622662G>A	uc002axo.2	+	12	1817	c.1423G>A	c.(1423-1425)GGG>AGG	p.G475R	CCDC33_uc002axp.2_Missense_Mutation_p.G297R|CCDC33_uc002axq.2_Missense_Mutation_p.G68R|CCDC33_uc002axr.2_Missense_Mutation_p.G68R	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	678	Potential.						protein binding			ovary(3)|skin(2)	5						GGAGGAAGAGGGGCAGGGCAA	0.642													6	11					0	0	0.001168	0	0
ARID3B	10620	broad.mit.edu	37	15	74882180	74882180	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:74882180C>T	uc002aye.2	+	5	918	c.717C>T	c.(715-717)ATC>ATT	p.I239I	ARID3B_uc002ayd.2_Silent_p.I239I|ARID3B_uc010bjs.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	239	ARID.|Interaction with RB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						TCAACCGAATCCCCATCATGG	0.522													14	48					0	0	0.010504	0	0
SCAMP5	192683	broad.mit.edu	37	15	75310285	75310285	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:75310285C>T	uc002azk.1	+	5	530	c.368C>T	c.(367-369)GCC>GTC	p.A123V	SCAMP5_uc002azl.1_Missense_Mutation_p.A123V|SCAMP5_uc002azm.1_Missense_Mutation_p.A123V|SCAMP5_uc002azn.1_Missense_Mutation_p.A123V|SCAMP5_uc010uly.1_Missense_Mutation_p.A52V	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	123	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						ATCATCCAGGCCGTGGGCATC	0.587													39	61					0	0	0.013114	0	0
PTPN9	5780	broad.mit.edu	37	15	75816585	75816585	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:75816585G>A	uc002bal.2	-	3	770	c.262C>T	c.(262-264)CGT>TGT	p.R88C		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	88	CRAL-TRIO.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						ATCTCAGAACGAAGAGGTTCC	0.388													16	44					0	0	0.010504	0	0
SNX33	257364	broad.mit.edu	37	15	75942805	75942805	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:75942805G>A	uc002bau.2	+	1	1458	c.1362G>A	c.(1360-1362)GGG>GGA	p.G454G	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_Intron	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	454	BAR.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						AAGCCATCGGGGAGATGTTTG	0.552													44	82					0	0	0.010771	0	0
IDH3A	3419	broad.mit.edu	37	15	78452546	78452546	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:78452546A>C	uc002bdd.2	+	4	314	c.287A>C	c.(286-288)AAA>ACA	p.K96T	IDH3A_uc010umt.1_Missense_Mutation_p.K96T|IDH3A_uc010umu.1_Intron|IDH3A_uc002bde.2_Missense_Mutation_p.K46T|IDH3A_uc010umv.1_Missense_Mutation_p.K46T|IDH3A_uc002bdf.2_5'UTR|IDH3A_uc002bdg.2_Missense_Mutation_p.K9T	NM_005530	NP_005521	P50213	IDH3A_HUMAN	isocitrate dehydrogenase 3 (NAD+) alpha	96					carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	ATGGGCTTGAAAGGTAGCACT	0.458													14	15					0	0	0.004990	0	0
ZNF592	9640	broad.mit.edu	37	15	85341252	85341252	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:85341252C>T	uc002bld.2	+	6	2888	c.2552C>T	c.(2551-2553)CCC>CTC	p.P851L	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	851					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ACCCAGCACCCCACCCAGCCC	0.627													13	20					0	0	0.002450	0	0
ACAN	176	broad.mit.edu	37	15	89414652	89414652	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:89414652G>A	uc010upo.1	+	14	7360	c.6986G>A	c.(6985-6987)GGC>GAC	p.G2329D	ACAN_uc010upp.1_Missense_Mutation_p.G2291D|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2329					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AAGTACCAGGGCCACTGTTAC	0.642													19	30					0	0	0.010504	0	0
OR4F15	390649	broad.mit.edu	37	15	102359075	102359075	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr15:102359075C>T	uc010uts.1	+	1	686	c.686C>T	c.(685-687)TCT>TTT	p.S229F		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TGGAAACATTCTTCTGGTGGT	0.458													48	72					0	0	0.003610	0	0
MSLNL	401827	broad.mit.edu	37	16	825618	825618	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:825618C>T	uc002cjz.1	-	5	1143	c.1143G>A	c.(1141-1143)GGG>GGA	p.G381G		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	105	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GGCCCCGTTTCCCACATGTCG	0.721													7	19					0	0	0.003080	0	0
LMF1	64788	broad.mit.edu	37	16	929698	929698	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:929698G>A	uc002ckj.2	-	6	773	c.769C>T	c.(769-771)CAC>TAC	p.H257Y	LMF1_uc010brh.2_Missense_Mutation_p.H40Y|LMF1_uc010bri.2_Missense_Mutation_p.H20Y|LMF1_uc002ckk.2_Missense_Mutation_p.H40Y|LMF1_uc010uuu.1_RNA	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	257	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				CAGGGTGAGTGGTGCAGGTAG	0.652													5	6					0	0	0.001168	0	0
CACNA1H	8912	broad.mit.edu	37	16	1250535	1250535	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:1250535C>T	uc002cks.2	+	7	1331	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	CACNA1H_uc002ckt.2_Silent_p.F361F	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	361	Extracellular (Potential).|I.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CCATCAACTTCGACAACATCG	0.647													17	32					0	0	0.008871	0	0
TSC2	7249	broad.mit.edu	37	16	2114419	2114419	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2114419C>T	uc002con.2	+	15	1696	c.1590C>T	c.(1588-1590)ATC>ATT	p.I530I	TSC2_uc010bsd.2_Silent_p.I530I|TSC2_uc002coo.2_Silent_p.I530I|TSC2_uc010uvv.1_Silent_p.I493I|TSC2_uc010uvw.1_Silent_p.I481I|TSC2_uc002cop.2_Silent_p.I330I	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	530					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				TGCTGGACATCATCGAGAAGG	0.627			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				24	42					0	0	0.002780	0	0
PKD1	5310	broad.mit.edu	37	16	2168111	2168111	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2168111G>A	uc002cos.1	-	5	1091	c.882C>T	c.(880-882)ATC>ATT	p.I294I	PKD1_uc002cot.1_Silent_p.I294I	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	294	Extracellular (Potential).|PKD 1.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GCGGGGCAGCGATGTGGAAGG	0.711													11	10					0	0	0.010729	0	0
ABCA3	21	broad.mit.edu	37	16	2338046	2338046	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2338046C>T	uc002cpy.1	-	21	3697	c.2985G>A	c.(2983-2985)CAG>CAA	p.Q995Q	ABCA3_uc010bsk.1_Silent_p.Q937Q	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	995					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CGCGGGGCTCCTGTCCCTCAG	0.617													9	16					0	0	0.010729	0	0
TBC1D24	57465	broad.mit.edu	37	16	2546535	2546535	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2546535C>T	uc002cql.2	+	2	526	c.386C>T	c.(385-387)TCC>TTC	p.S129F	TBC1D24_uc002cqk.2_Missense_Mutation_p.S129F|TBC1D24_uc002cqm.2_Missense_Mutation_p.S129F|TBC1D24_uc010bsm.2_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	129	Rab-GAP TBC.				neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						CCCGACATCTCCTTCTGCCCC	0.667													13	44					0	0	0.003163	0	0
AMDHD2	51005	broad.mit.edu	37	16	2577843	2577843	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2577843C>T	uc002cqq.2	+	5	582	c.485C>T	c.(484-486)TCC>TTC	p.S162F	AMDHD2_uc002cqp.2_Missense_Mutation_p.S162F|AMDHD2_uc010uwc.1_Missense_Mutation_p.S162F|AMDHD2_uc010uwd.1_5'UTR	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	162					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						CACCTCCGCTCCTTCGAGGCC	0.692													9	12					0	0	0.006214	0	0
PDPK1	5170	broad.mit.edu	37	16	2647217	2647218	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2647217_2647218CC>TT	uc002cqs.2	+	13	1639_1640	c.1495_1496CC>TT	c.(1495-1497)CCT>TTT	p.P499F	PDPK1_uc002cqt.2_Missense_Mutation_p.P372F|PDPK1_uc010bsn.2_Intron|PDPK1_uc002cqu.2_Missense_Mutation_p.P472F	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	499	PH.				actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	AGGTGAAATTCCTTGGTCACAA	0.446													49	48					0	0	0.004672	0	0
PRSS33	260429	broad.mit.edu	37	16	2836100	2836100	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:2836100C>T	uc002cro.1	-	2	229	c.69G>A	c.(67-69)AGG>AGA	p.R23R	PRSS33_uc002crp.1_Silent_p.R23R|PRSS33_uc010uwh.1_Silent_p.R23R	NM_152891	NP_690851	Q8NF86	PRS33_HUMAN	protease, serine, 33 precursor	23					proteolysis		serine-type endopeptidase activity				0						CTGCAGACTTCCTTCCCTGAG	0.612													21	25					0	0	0.002780	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139523	3139523	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:3139523C>T	uc002ctv.1	-	5	1835	c.1747G>A	c.(1747-1749)GAG>AAG	p.E583K	ZSCAN10_uc002cty.1_Missense_Mutation_p.E244K|ZSCAN10_uc002ctw.1_Missense_Mutation_p.E501K|ZSCAN10_uc002ctx.1_Missense_Mutation_p.E511K	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	583	C2H2-type 10.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TCACCGCACTCGCTGCAGCGG	0.706													5	10					0	0	0.001168	0	0
ZNF205	7755	broad.mit.edu	37	16	3165537	3165537	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:3165537C>T	uc002cub.2	+	3	374	c.239C>T	c.(238-240)TCT>TTT	p.S80F	MGC3771_uc010bte.2_RNA|MGC3771_uc002ctz.3_RNA|ZNF205_uc002cua.2_Missense_Mutation_p.S80F	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						AGTCACGGCTCTAAGGAGAAA	0.637													14	12					0	0	0.002450	0	0
ZNF200	7752	broad.mit.edu	37	16	3273957	3273957	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:3273957G>A	uc002cuj.2	-	5	1755	c.1123C>T	c.(1123-1125)CGG>TGG	p.R375W	ZNF200_uc002cum.3_Missense_Mutation_p.R374W|ZNF200_uc010bti.2_Missense_Mutation_p.R374W|ZNF200_uc002cuk.2_Missense_Mutation_p.R375W|ZNF200_uc002cui.2_Missense_Mutation_p.R374W|ZNF200_uc002cul.3_Missense_Mutation_p.R374W	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	375	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TTTGACAGCCGACCAAATCTT	0.488													122	192					0	0	0.003610	0	0
ZNF434	54925	broad.mit.edu	37	16	3433091	3433091	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:3433091G>T	uc002cuz.2	-	6	2021	c.1219C>A	c.(1219-1221)CAG>AAG	p.Q407K	ZNF434_uc002cux.3_Missense_Mutation_p.Q618K|ZNF434_uc010uwx.1_Missense_Mutation_p.Q330K|ZNF434_uc002cuy.3_Missense_Mutation_p.Q330K	NM_017810	NP_060280	Q9NX65	ZN434_HUMAN	zinc finger protein 434	407	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCACTGAACTGGGAACTGTTG	0.527													18	61					1.00905e-13	1.09062e-13	0.008871	1	0
BTBD12	84464	broad.mit.edu	37	16	3639432	3639432	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:3639432C>T	uc002cvp.2	-	12	4834	c.4207G>A	c.(4207-4209)GAG>AAG	p.E1403K		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1403	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						GAGGCCACCTCCTGCTCATCG	0.617								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				40	59					0	0	0.006999	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931667	11931667	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:11931667G>A	uc002dbp.1	-	9	1523	c.1450C>T	c.(1450-1452)CCC>TCC	p.P484S	RSL1D1_uc010buv.1_Missense_Mutation_p.P483S|RSL1D1_uc010uyw.1_Missense_Mutation_p.P264S	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	484					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						GGTACTTTGGGTTTTTTGGGC	0.413													82	122					0	0	0.003610	0	0
SNX29	92017	broad.mit.edu	37	16	12618580	12618580	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:12618580C>G	uc002dby.3	+	13	1101	c.1045C>G	c.(1045-1047)CGG>GGG	p.R349G		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	349	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1						TGTGGAGGAACGGAGAAAGCA	0.517													15	22					0	0	0.002450	0	0
PDXDC1	23042	broad.mit.edu	37	16	15092243	15092243	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:15092243C>T	uc002dda.3	+	3	366	c.142C>T	c.(142-144)CCA>TCA	p.P48S	PDXDC1_uc010uzl.1_Missense_Mutation_p.P33S|PDXDC1_uc010uzm.1_Missense_Mutation_p.P33S|PDXDC1_uc010bvc.1_5'UTR|PDXDC1_uc002dcz.2_Missense_Mutation_p.P48S|PDXDC1_uc002ddb.3_Missense_Mutation_p.P48S|PDXDC1_uc010uzn.1_Missense_Mutation_p.P47S|PDXDC1_uc002ddc.2_Missense_Mutation_p.P48S	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	48					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CGGAGATATTCCAGGCCCACT	0.313													13	89					0	0	0.004990	0	0
ABCC1	4363	broad.mit.edu	37	16	16162084	16162084	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:16162084C>T	uc010bvi.2	+	13	1924	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	ABCC1_uc010bvj.2_Silent_p.F583F|ABCC1_uc010bvk.2_Silent_p.F583F|ABCC1_uc010bvl.2_Silent_p.F583F|ABCC1_uc010bvm.2_Silent_p.F583F|ABCC1_uc002del.3_Silent_p.F467F	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	583	ABC transmembrane type-1 1.|Extracellular.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AGACAGCCTTCGTGTCTTTGG	0.562													44	57					0	0	0.003610	0	0
SYT17	51760	broad.mit.edu	37	16	19195177	19195177	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:19195177C>T	uc002dfw.2	+	5	990	c.659C>T	c.(658-660)TCG>TTG	p.S220L	SYT17_uc002dfx.2_Missense_Mutation_p.S159L|SYT17_uc002dfy.2_Missense_Mutation_p.S216L|SYT17_uc002dfv.1_Missense_Mutation_p.S159L	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	220	C2 1.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						CACGATGGCTCGCGCCAGGAC	0.602													61	119					0	0	0.003610	0	0
ACSM5	54988	broad.mit.edu	37	16	20448501	20448501	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:20448501G>A	uc002dhe.2	+	11	1583	c.1436G>A	c.(1435-1437)AGC>AAC	p.S479N		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	479					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						AATTCTTCAAGGTCAAGCTGT	0.488													48	91					0	0	0.003610	0	0
ACSM1	116285	broad.mit.edu	37	16	20696634	20696634	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:20696634G>A	uc002dhm.1	-	2	352	c.284C>T	c.(283-285)ACC>ATC	p.T95I	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.T95I	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	95					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TACACGGCGGGTTAGGTCTCC	0.557													47	65					0	0	0.003610	0	0
ACSM3	6296	broad.mit.edu	37	16	20781570	20781570	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:20781570G>A	uc002dhr.2	+	2	401	c.214G>A	c.(214-216)GAA>AAA	p.E72K	ACSM3_uc002dhq.2_Missense_Mutation_p.E72K|ACSM3_uc010vba.1_Missense_Mutation_p.E64K	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	72					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						GACTGATAAGGAAAAGGTATG	0.299													9	14					0	0	0.004482	0	0
ZP2	7783	broad.mit.edu	37	16	21221024	21221024	+	Silent	SNP	C	T	T	rs150656642		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:21221024C>T	uc002dii.2	-	4	258	c.258G>A	c.(256-258)CCG>CCA	p.P86P	ZP2_uc010bwn.1_Silent_p.P125P|ZP2_uc010bwo.2_Silent_p.P125P	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	86	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		AAGTGCAGTTCGGCATGTCGA	0.498													33	50					0	0	0.004289	0	0
NDUFAB1	4706	broad.mit.edu	37	16	23598636	23598636	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:23598636G>A	uc002dlw.2	-	2	201	c.173C>T	c.(172-174)CCT>CTT	p.P58L		NM_005003	NP_004994	O14561	ACPM_HUMAN	NADH dehydrogenase (ubiquinone) 1, alpha/beta	58					fatty acid biosynthetic process|mitochondrial electron transport, NADH to ubiquinone	mitochondrial matrix|mitochondrial respiratory chain complex I	acyl carrier activity|calcium ion binding|cofactor binding|fatty acid binding|NADH dehydrogenase (ubiquinone) activity|phosphopantetheine binding				0				GBM - Glioblastoma multiforme(48;0.0339)	NADH(DB00157)	AACTCTACCAGGAACCTAGAG	0.463													9	23					0	0	0.004482	0	0
PRKCB	5579	broad.mit.edu	37	16	24196784	24196784	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:24196784C>T	uc002dmd.2	+	15	1815	c.1618C>T	c.(1618-1620)CCC>TCC	p.P540S	PRKCB_uc002dme.2_Missense_Mutation_p.P540S	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	540	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CATACAGGCACCCTTTGAAGG	0.557													20	44					0	0	0.007413	0	0
SULT1A2	6799	broad.mit.edu	37	16	28603629	28603630	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:28603629_28603630GG>AC	uc002dqg.1	-	7	1080_1081	c.729_730CC>GT	c.(727-732)GTCCGC>GTGTGC	p.R244C	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Missense_Mutation_p.R244C	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	244					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						AACTCCCGGCGGACGGTGGTGT	0.599													28	100					0	0	0.004672	0	0
MVP	9961	broad.mit.edu	37	16	29853079	29853079	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:29853079C>T	uc002dui.2	+	9	1438	c.1354C>T	c.(1354-1356)CGG>TGG	p.R452W	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.R452W|MVP_uc010vea.1_Missense_Mutation_p.R46W	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	452	MVP 8.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CTTGGCGCCCCGGAACAAGAC	0.662													10	10					0	0	0.008291	0	0
TBC1D10B	26000	broad.mit.edu	37	16	30369782	30369782	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:30369782T>G	uc002dxu.2	-	9	1928	c.1910A>C	c.(1909-1911)CAT>CCT	p.H637P	TBC1D10B_uc002dxt.2_Missense_Mutation_p.H62P	NM_015527	NP_056342	Q4KMP7	TB10B_HUMAN	TBC1 domain family, member 10B	637						cytoplasm	Rab GTPase activator activity				0			Colorectal(24;0.193)			CCGGGACCCATGCAGTCGCCG	0.687													2	10					0	0	0.004672	0	0
ZNF768	79724	broad.mit.edu	37	16	30536347	30536347	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:30536347G>A	uc002dyk.3	-	2	1290	c.1114C>T	c.(1114-1116)CCC>TCC	p.P372S	ZNF768_uc010vex.1_Missense_Mutation_p.P341S|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.P341S	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	372					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						CAGCTGTAGGGCCGCTCGTGG	0.632													7	15					0	0	0.001984	0	0
ITGAM	3684	broad.mit.edu	37	16	31282368	31282368	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:31282368C>A	uc002ebq.2	+	6	619	c.521C>A	c.(520-522)TCA>TAA	p.S174*	ITGAM_uc002ebr.2_Nonsense_Mutation_p.S174*	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	174	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GAGTTTGTCTCAACTGTGATG	0.433													57	82					3.88204e-17	4.20845e-17	0.003610	1	0
ITGAM	3684	broad.mit.edu	37	16	31341482	31341483	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:31341482_31341483GG>AA	uc002ebq.2	+	26	3155_3156	c.3057_3058GG>AA	c.(3055-3060)GTGGTG>GTAATG	p.V1020M	ITGAM_uc002ebr.2_Missense_Mutation_p.V1021M|ITGAM_uc010can.2_Missense_Mutation_p.V426M	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	1020	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AGGCCCCCGTGGTGGTGAGAAG	0.599													7	12					0	0	0.004672	0	0
ZNF267	10308	broad.mit.edu	37	16	31926233	31926233	+	Silent	SNP	T	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:31926233T>G	uc002ecs.3	+	4	872	c.663T>G	c.(661-663)TCT>TCG	p.S221S		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	221					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						GCAATAATTCTGAAAAAACCT	0.289													9	13					0	0	0.006214	0	0
SALL1	6299	broad.mit.edu	37	16	51171159	51171159	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:51171159C>T	uc010vgs.1	-	3	3870	c.3839G>A	c.(3838-3840)GGA>GAA	p.G1280E	SALL1_uc010vgr.1_Missense_Mutation_p.G1183E|SALL1_uc010cbv.2_Missense_Mutation_p.G132E	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1280					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTCCAGGTTTCCCGTCAGCCC	0.582													20	41					0	0	0.002299	0	0
SALL1	6299	broad.mit.edu	37	16	51171225	51171225	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:51171225C>T	uc010vgs.1	-	3	3804	c.3773G>A	c.(3772-3774)GGT>GAT	p.G1258D	SALL1_uc010vgr.1_Missense_Mutation_p.G1161D|SALL1_uc010cbv.2_Missense_Mutation_p.G110D	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1258					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGGGATGCCACCGTTCTGAAT	0.572													18	35					0	0	0.007413	0	0
SALL1	6299	broad.mit.edu	37	16	51174325	51174325	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:51174325C>T	uc010vgs.1	-	2	1839	c.1808G>A	c.(1807-1809)AGA>AAA	p.R603K	SALL1_uc010vgr.1_Missense_Mutation_p.R506K|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	603					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACCTAGGTTTCTTGTGGCTGA	0.612													18	24					0	0	0.008871	0	0
SALL1	6299	broad.mit.edu	37	16	51175240	51175240	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:51175240C>T	uc010vgs.1	-	2	924	c.893G>A	c.(892-894)GGA>GAA	p.G298E	SALL1_uc010vgr.1_Missense_Mutation_p.G201E|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	298					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTGTGCCAATCCAGCTGCTGC	0.517													38	71					0	0	0.004878	0	0
ZFP90	146198	broad.mit.edu	37	16	68598392	68598392	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:68598392C>T	uc010cff.2	+	5	1994	c.1702C>T	c.(1702-1704)CTC>TTC	p.L568F	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.L568F|ZFP90_uc002ewe.2_Missense_Mutation_p.L568F	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	568	C2H2-type 11.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		AAGTTCATCTCTCATTCAGCA	0.438													45	104					0	0	0.013114	0	0
CIRH1A	84916	broad.mit.edu	37	16	69184786	69184787	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:69184786_69184787CC>TT	uc002ews.3	+	8	1077_1078	c.981_982CC>TT	c.(979-984)CTCCGA>CTTTGA	p.R328*	CIRH1A_uc002ewr.2_Nonsense_Mutation_p.R328*|CIRH1A_uc002ewt.3_Nonsense_Mutation_p.R245*|CIRH1A_uc010cfi.2_Nonsense_Mutation_p.R245*|CIRH1A_uc010cfj.1_Nonsense_Mutation_p.R147*	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	328	WD 8.					nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		ATGCCGCTCTCCGAAAAATCAC	0.53													22	46					0	0	0.004672	0	0
SF3B3	23450	broad.mit.edu	37	16	70597922	70597922	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:70597922C>G	uc002ezf.2	+	18	2643	c.2432C>G	c.(2431-2433)ACG>AGG	p.T811R		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	811					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				ACTGAGGCCACGAAAGCTCAG	0.428													20	37					0	0	0.010504	0	0
HYDIN	54768	broad.mit.edu	37	16	70926270	70926270	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:70926270G>A	uc002ezr.2	-	56	9536	c.9408C>T	c.(9406-9408)CGC>CGT	p.R3136R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3137										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTACCTGACAGCGCAGAACAG	0.493													12	27					0	0	0.001855	0	0
CALB2	794	broad.mit.edu	37	16	71411569	71411569	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:71411569G>A	uc002faa.3	+	4	332	c.262_splice	c.e4-1	p.L88_splice	CALB2_uc010vme.1_Splice_Site|CALB2_uc002fac.3_Splice_Site_p.L88_splice	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1								calcium ion binding				0		Ovarian(137;0.125)				TATCTTCACAGCTGGCGCAGA	0.567													26	47					0	0	0.006320	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668226	71668226	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:71668226G>A	uc002fat.2	+	3	789	c.726G>A	c.(724-726)GGG>GGA	p.G242G	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	242	MARVEL.|Helical; (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				AGTTCGGAGGGGCTTACAGTG	0.562													34	70					0	0	0.006230	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668650	71668650	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:71668650G>A	uc002fat.2	+	3	1213	c.1150G>A	c.(1150-1152)GGC>AGC	p.G384S	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	384	MARVEL.|Cytoplasmic (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				GGCCATAAAGGGCTACCGAAA	0.498													31	42					0	0	0.012213	0	0
ZNF821	55565	broad.mit.edu	37	16	71898924	71898924	+	Missense_Mutation	SNP	G	C	C	rs139528518	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:71898924G>C	uc010vmj.1	-	4	570	c.194C>G	c.(193-195)ACG>AGG	p.T65R	ATXN1L_uc010vmi.1_Intron|ZNF821_uc002fbe.2_5'UTR|ZNF821_uc002fbf.2_Missense_Mutation_p.T23R|ZNF821_uc002fbg.3_Intron|ZNF821_uc002fbh.3_Missense_Mutation_p.T23R|ZNF821_uc002fbi.3_5'UTR	NM_017530	NP_060000	O75541	ZN821_HUMAN	zinc finger protein 821	65					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATCTTGTGTCGTCTCCTCTTC	0.473													54	87					0	0	0.003610	0	0
ZFHX3	463	broad.mit.edu	37	16	72992931	72992931	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:72992931G>A	uc002fck.2	-	2	1787	c.1114C>T	c.(1114-1116)CGA>TGA	p.R372*	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	372					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CCTTCCATTCGAATGCCACTA	0.537													32	70					0	0	0.003271	0	0
GLG1	2734	broad.mit.edu	37	16	74496043	74496043	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:74496043G>A	uc002fcy.3	-	22	3035	c.2985C>T	c.(2983-2985)TCC>TCT	p.S995S	GLG1_uc002fcx.2_Silent_p.S995S|GLG1_uc002fcw.3_Silent_p.S984S|GLG1_uc002fcz.3_Silent_p.S412S	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	995	Extracellular (Potential).|Cys-rich GLG1 15.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						AGTCCAGGGCGGACTCCTGGA	0.532													28	53					0	0	0.008361	0	0
CHST5	23563	broad.mit.edu	37	16	75563417	75563417	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:75563417C>T	uc002fei.2	-	3	2261	c.866G>A	c.(865-867)CGC>CAC	p.R289H	CHST5_uc002fej.1_Missense_Mutation_p.R295H	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	289	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CAGGCGGTAGCGGCCGCGCAG	0.716													24	55					0	0	0.004656	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76592486	76592486	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:76592486G>A	uc002feu.1	+	26	4218	c.3833G>A	c.(3832-3834)AGG>AAG	p.R1278K	CNTNAP4_uc002fev.1_Missense_Mutation_p.R1142K|CNTNAP4_uc010chb.1_Missense_Mutation_p.R1205K|CNTNAP4_uc002fex.1_Missense_Mutation_p.R1281K	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1278	Cytoplasmic (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GAGGCAAAAAGGTCAGAGAAT	0.378													11	27					0	0	0.008291	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353924	77353924	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:77353924G>A	uc002ffc.3	-	16	2773	c.2354C>T	c.(2353-2355)TCC>TTC	p.S785F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S373F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S481F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	785	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTAACTGGAGGAAACCTGCAG	0.537													18	35					0	0	0.006122	0	0
PKD1L2	114780	broad.mit.edu	37	16	81155284	81155284	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:81155284G>A	uc002fgh.1	-	40	6519	c.6519C>T	c.(6517-6519)CTC>CTT	p.L2173L	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2173	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGTACAGGCGGAGGCTCTGCA	0.602													6	16					0	0	0.001168	0	0
PKD1L2	114780	broad.mit.edu	37	16	81187717	81187717	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:81187717C>T	uc002fgh.1	-	26	4255	c.4255G>A	c.(4255-4257)GGA>AGA	p.G1419R	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1419	Cytoplasmic (Potential).|PLAT.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTCTCTCTCCATCCAGGCCA	0.582													5	11					0	0	0.000602	0	0
HSD17B2	3294	broad.mit.edu	37	16	82131868	82131868	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:82131868G>A	uc002fgv.2	+	5	1163	c.991G>A	c.(991-993)GCG>ACG	p.A331T		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	331					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	TGCTATCTTGGCGAAGAGCCC	0.483													24	37					0	0	0.003954	0	0
WFDC1	58189	broad.mit.edu	37	16	84353060	84353060	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:84353060G>A	uc002fhw.2	+	4	622	c.445G>A	c.(445-447)GAT>AAT	p.D149N	WFDC1_uc002fhv.2_Missense_Mutation_p.D149N	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	149					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						CACCACGGAGGATGGGGCCGA	0.637													16	26					0	0	0.004990	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87445949	87445949	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr16:87445949G>A	uc002fjz.1	-	12	1994	c.1967C>T	c.(1966-1968)TCC>TTC	p.S656F	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.S432F	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	656					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		ATTAGGACAGGAAGTTTGCCC	0.537													54	104					0	0	0.003610	0	0
C17orf97	400566	broad.mit.edu	37	17	263312	263312	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:263312C>T	uc002frh.2	+	3	724	c.708C>T	c.(706-708)CAC>CAT	p.H236H	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	236	4.|20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.									ovary(1)	1						AGGGCTTCCACCCCGACCCCG	0.711													18	19					0	0	0.012319	0	0
ITGAE	3682	broad.mit.edu	37	17	3646903	3646903	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:3646903C>T	uc002fwo.3	-	19	2427	c.2328G>A	c.(2326-2328)GAG>GAA	p.E776E		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	776	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		AGCAGTCCTCCTCACAGAGCT	0.493													52	95					0	0	0.003610	0	0
ATP2A3	489	broad.mit.edu	37	17	3839721	3839721	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:3839721G>A	uc002fxb.1	-	16	2515	c.2364C>T	c.(2362-2364)ATC>ATT	p.I788I	ATP2A3_uc002fwx.1_Silent_p.I788I|ATP2A3_uc002fwy.1_Silent_p.I788I|ATP2A3_uc002fwz.1_Silent_p.I788I|ATP2A3_uc002fxa.1_Silent_p.I788I|ATP2A3_uc002fxc.1_Silent_p.I788I|ATP2A3_uc002fxd.1_Silent_p.I788I	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	788	Helical; Name=6; (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GCTGCACAGGGATCAGGGCTT	0.632													17	54					0	0	0.007413	0	0
USP6	9098	broad.mit.edu	37	17	5064879	5064879	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:5064879G>A	uc002gau.1	+	32	5115	c.2885G>A	c.(2884-2886)GGG>GAG	p.G962E	USP6_uc002gav.1_Missense_Mutation_p.G962E|USP6_uc010ckz.1_Missense_Mutation_p.G645E	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	962					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAGAAAGATGGGAACTCCTGT	0.368			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								27	43					0	0	0.003271	0	0
FAM64A	54478	broad.mit.edu	37	17	6350797	6350797	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:6350797C>T	uc002gcw.1	+	3	358	c.309C>T	c.(307-309)TCC>TCT	p.S103S	FAM64A_uc002gct.1_Silent_p.S103S|FAM64A_uc002gcu.1_Silent_p.S103S|FAM64A_uc002gcv.1_Silent_p.S134S|FAM64A_uc002gcx.1_Silent_p.S103S|FAM64A_uc002gcy.1_RNA|FAM64A_uc002gcz.1_RNA|FAM64A_uc002gda.1_Silent_p.S103S|FAM64A_uc002gdb.1_Silent_p.S103S	NM_019013	NP_061886	Q9BSJ6	FA64A_HUMAN	family with sequence similarity 64, member A	103						nucleolus	protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		TCCAGGAGTCCTGCCAAAGTG	0.438													48	97					0	0	0.003610	0	0
KIAA0753	9851	broad.mit.edu	37	17	6531876	6531876	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:6531876G>A	uc002gde.3	-	3	638	c.279C>T	c.(277-279)TCC>TCT	p.S93S	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	93						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GTCTCTCTTGGGATATGACGG	0.398													26	55					0	0	0.003954	0	0
TNK1	8711	broad.mit.edu	37	17	7286798	7286798	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:7286798C>T	uc002ggi.3	+	4	449	c.289C>T	c.(289-291)CCA>TCA	p.P97S	TNK1_uc002ggj.3_Missense_Mutation_p.P97S|TNK1_uc010cmf.2_RNA	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	97					protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				CTCGGACAGCCCACGGCACCT	0.637													14	21					0	0	0.003163	0	0
TNK1	8711	broad.mit.edu	37	17	7290739	7290739	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:7290739G>A	uc002ggi.3	+	10	1615	c.1455G>A	c.(1453-1455)CGG>CGA	p.R485R	TNK1_uc002ggj.3_Silent_p.R480R|TNK1_uc010cmf.2_RNA|TNK1_uc002ggk.3_Silent_p.R82R	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	485					protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				CCCCAGCACGGGGCCAGAGGA	0.572													8	8					0	0	0.008291	0	0
SENP3	26168	broad.mit.edu	37	17	7466977	7466977	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:7466977C>T	uc002ghm.2	+	2	857	c.584C>T	c.(583-585)CCC>CTC	p.P195L	EIF4A1_uc002gho.1_5'Flank|SENP3_uc002ghn.1_5'Flank	NM_015670	NP_056485	Q9H4L4	SENP3_HUMAN	SUMO1/sentrin/SMT3 specific protease 3	195	Poly-Pro.				proteolysis	MLL1 complex|nucleolus	cysteine-type peptidase activity			ovary(1)|central_nervous_system(1)	2		Prostate(122;0.157)				CCACCTCCACCCCGGCTGGGT	0.652													13	15					0	0	0.001368	0	0
DNAH2	146754	broad.mit.edu	37	17	7674702	7674702	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:7674702T>A	uc002giu.1	+	27	4431	c.4417T>A	c.(4417-4419)TTT>ATT	p.F1473I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1473	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ATCGACCTTATTTGACCAGGT	0.527													32	61					0	0	0.012213	0	0
ALOX12B	242	broad.mit.edu	37	17	7989535	7989535	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:7989535C>T	uc002gjy.1	-	2	412	c.151G>A	c.(151-153)GGC>AGC	p.G51S	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	51	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GTGTACTGGCCCACCTAGGCA	0.647										Multiple Myeloma(8;0.094)			8	12					0	0	0.004482	0	0
PFAS	5198	broad.mit.edu	37	17	8158942	8158942	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:8158942C>T	uc002gkr.2	+	5	648	c.507C>T	c.(505-507)CCC>CCT	p.P169P	PFAS_uc010vuv.1_Intron	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	169					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TGCCGGAACCCCTCAATGGCC	0.597													18	22					0	0	0.007413	0	0
GLP2R	9340	broad.mit.edu	37	17	9765377	9765377	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:9765377C>T	uc002gmd.1	+	9	1026	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	342	Helical; Name=5; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TCTGGTGGATCATCCGAGGAC	0.507													58	100					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10362677	10362677	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:10362677T>C	uc002gmn.2	-	15	1589	c.1478A>G	c.(1477-1479)AAC>AGC	p.N493S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	493	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CATGTGGTGGTTGAAAAACTG	0.473													46	77					0	0	0.013114	0	0
MYH2	4620	broad.mit.edu	37	17	10429088	10429088	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:10429088G>A	uc010coi.2	-	31	4421	c.4293C>T	c.(4291-4293)GTC>GTT	p.V1431V	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.V1431V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1431	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGAGGTCCTCGACCTCATTCT	0.537													52	47					0	0	0.003610	0	0
MYOCD	93649	broad.mit.edu	37	17	12647605	12647605	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:12647605G>A	uc002gnn.2	+	8	1122	c.823G>A	c.(823-825)GCA>ACA	p.A275T	MYOCD_uc002gno.2_Missense_Mutation_p.A275T|MYOCD_uc002gnp.1_Missense_Mutation_p.A179T|MYOCD_uc002gnq.2_5'UTR	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	275					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGACCAGAAGGCAGAGAAGTC	0.502													25	42					0	0	0.004656	0	0
RICH2	9912	broad.mit.edu	37	17	12887980	12887980	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:12887980G>A	uc002gnr.3	+	20	2399	c.2072G>A	c.(2071-2073)GGA>GAA	p.G691E	RICH2_uc010vvk.1_Missense_Mutation_p.G691E|RICH2_uc010vvl.1_Missense_Mutation_p.G685E|RICH2_uc002gns.3_Missense_Mutation_p.G485E|RICH2_uc010vvm.1_Missense_Mutation_p.G685E|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	691					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TCACCCTATGGACTGAGCTAC	0.667													9	16					0	0	0.004482	0	0
ELAC2	60528	broad.mit.edu	37	17	12898332	12898332	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:12898332G>A	uc002gnz.3	-	20	1951	c.1856C>T	c.(1855-1857)CCT>CTT	p.P619L	ELAC2_uc002gnu.3_Missense_Mutation_p.P16L|ELAC2_uc002gnv.3_Missense_Mutation_p.P247L|ELAC2_uc002gnw.3_Missense_Mutation_p.P277L|ELAC2_uc002gnx.3_Missense_Mutation_p.P379L|ELAC2_uc010vvo.1_Missense_Mutation_p.P417L|ELAC2_uc010vvp.1_Missense_Mutation_p.P600L|ELAC2_uc010vvq.1_Missense_Mutation_p.P618L|ELAC2_uc010vvr.1_Missense_Mutation_p.P579L	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	619					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						TTCCACTGCAGGACTGGAGAT	0.478									Hereditary_Prostate_Cancer				88	149					0	0	0.003610	0	0
ZNF286A	57335	broad.mit.edu	37	17	15619830	15619830	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:15619830C>T	uc010cot.2	+	6	1188	c.792C>T	c.(790-792)GTC>GTT	p.V264V	ZNF286A_uc002goz.3_Silent_p.V152V|ZNF286A_uc010vwa.1_Silent_p.V264V|ZNF286A_uc002gpa.2_Silent_p.V264V	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	264	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		ACCAGAGAGTCCATACTGGAG	0.373													17	32					0	0	0.008871	0	0
NCOR1	9611	broad.mit.edu	37	17	15973652	15973652	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:15973652C>T	uc002gpo.2	-	31	4580	c.4340G>A	c.(4339-4341)CGG>CAG	p.R1447Q	NCOR1_uc002gpn.2_Missense_Mutation_p.R1463Q|NCOR1_uc002gpp.1_Missense_Mutation_p.R1354Q|NCOR1_uc002gpm.2_5'Flank|NCOR1_uc010vwb.1_Missense_Mutation_p.R31Q|NCOR1_uc010coy.2_Missense_Mutation_p.R355Q|NCOR1_uc010vwc.1_Missense_Mutation_p.R258Q	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1447	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGACGTGTGCCGGGAACGCAC	0.532													38	64					0	0	0.006999	0	0
MPRIP	23164	broad.mit.edu	37	17	17062245	17062245	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:17062245G>A	uc002gqu.1	+	14	2031	c.1975G>A	c.(1975-1977)GTC>ATC	p.V659I	MPRIP_uc002gqv.1_Missense_Mutation_p.V659I|MPRIP_uc002gqw.1_Missense_Mutation_p.V414I	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	659	Interaction with RHOA.					cytoplasm|cytoskeleton	actin binding				0						CATCGCCCCCGTCCACCTGTC	0.602													9	18					0	0	0.006214	0	0
MYO15A	51168	broad.mit.edu	37	17	18023051	18023051	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:18023051G>A	uc010vxh.1	+	2	1275	c.937G>A	c.(937-939)GAA>AAA	p.E313K		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	313	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CGACGATTACGAACCCCCATA	0.612													23	46					0	0	0.002780	0	0
FBXW10	10517	broad.mit.edu	37	17	18659368	18659368	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:18659368A>G	uc002guk.2	+	6	1365	c.1133A>G	c.(1132-1134)AAC>AGC	p.N378S	FBXW10_uc002guj.2_Missense_Mutation_p.N378S|FBXW10_uc002gul.2_Missense_Mutation_p.N407S|FBXW10_uc010cqh.1_Missense_Mutation_p.N378S	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	378										ovary(1)	1						AATGAGTACAACCTGTGGACT	0.478													17	22					0	0	0.012319	0	0
AKAP10	11216	broad.mit.edu	37	17	19835231	19835231	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:19835231G>A	uc002gwo.2	-	10	1665	c.1528C>T	c.(1528-1530)CAT>TAT	p.H510Y	AKAP10_uc002gwp.1_Missense_Mutation_p.H510Y|AKAP10_uc010cqw.1_Intron	NM_007202	NP_009133	O43572	AKA10_HUMAN	A-kinase anchor protein 10 precursor	510					blood coagulation|protein localization	cytosol|mitochondrion|plasma membrane	signal transducer activity			skin(1)	1	all_cancers(12;2.08e-05)|all_epithelial(12;0.00158)|Breast(13;0.165)					CGAACCGAATGGATGAGATCA	0.433													15	33					0	0	0.003163	0	0
SUPT6H	6830	broad.mit.edu	37	17	27023944	27023945	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:27023944_27023945CC>TT	uc002hby.2	+	30	4143_4144	c.4053_4054CC>TT	c.(4051-4056)GACCAG>GATTAG	p.Q1352*	SUPT6H_uc010crt.2_Nonsense_Mutation_p.Q1352*	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1352	SH2.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					AGACCATGGACCAGGGTGATGT	0.485													22	53					0	0	0.004672	0	0
SUPT6H	6830	broad.mit.edu	37	17	27028629	27028629	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:27028629G>A	uc002hby.2	+	37	5257	c.5167G>A	c.(5167-5169)GAG>AAG	p.E1723K	SUPT6H_uc010crt.2_Missense_Mutation_p.E1723K	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1723					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					ACTCCTGGACGAGATGGATCG	0.642													22	39					0	0	0.003330	0	0
PIPOX	51268	broad.mit.edu	37	17	27380587	27380587	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:27380587C>T	uc002hdr.1	+	4	960	c.634C>T	c.(634-636)CCC>TCC	p.P212S		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	212					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	GCTCCTCCGTCCCCTGGGCAT	0.463													17	38					0	0	0.006122	0	0
MYO18A	399687	broad.mit.edu	37	17	27493258	27493258	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:27493258G>A	uc002hdt.1	-	2	859	c.701C>T	c.(700-702)TCC>TTC	p.S234F	MYO18A_uc010csa.1_Missense_Mutation_p.S234F|MYO18A_uc002hdu.1_Missense_Mutation_p.S234F	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	234	PDZ.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			GCGCCGCAGGGAGAAGCCAAA	0.697													24	38					0	0	0.003330	0	0
TP53I13	90313	broad.mit.edu	37	17	27899166	27899166	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:27899166G>A	uc002hee.2	+	6	558	c.520G>A	c.(520-522)GCT>ACT	p.A174T		NM_138349	NP_612358	Q8NBR0	P5I13_HUMAN	tumor protein p53 inducible protein 13	174	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane					0				READ - Rectum adenocarcinoma(3;0.236)		TTAGGCCCTGGCTCTGGCCTT	0.647													17	25					0	0	0.004007	0	0
NF1	4763	broad.mit.edu	37	17	29509639	29509639	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:29509639C>T	uc002hgg.2	+	8	1177	c.844C>T	c.(844-846)CAG>TAG	p.Q282*	NF1_uc002hge.1_Nonsense_Mutation_p.Q282*|NF1_uc002hgf.1_Nonsense_Mutation_p.Q282*|NF1_uc002hgh.2_Nonsense_Mutation_p.Q282*|NF1_uc010csn.1_Nonsense_Mutation_p.Q142*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	282					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGAAATAATCCAGGATATATC	0.368			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			10	18					0	0	0.006214	0	0
NF1	4763	broad.mit.edu	37	17	29553538	29553538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:29553538G>A	uc002hgg.2	+	18	2420	c.2087G>A	c.(2086-2088)TGG>TAG	p.W696*	NF1_uc002hgh.2_Nonsense_Mutation_p.W696*|NF1_uc010csn.1_Nonsense_Mutation_p.W556*|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	696					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)|p.W696fs*1(1)|p.W696*(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATGTTTCTGTGGAACCCTGAC	0.547			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			20	52					0	0	0.010504	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348369	30348370	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:30348369_30348370CC>GT	uc002hgu.2	+	1	215_216	c.204_205CC>GT	c.(202-207)GCCCCG>GCGTCG	p.P69S	LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_Missense_Mutation_p.P69S	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	69	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				CCCCAGCAGCCCCGGGGGACTT	0.599													38	76					0	0	0.004672	0	0
RHOT1	55288	broad.mit.edu	37	17	30533950	30533950	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:30533950G>A	uc002hgz.2	+	17	1677	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K	RHOT1_uc002hgw.2_Missense_Mutation_p.E480K|RHOT1_uc002hgy.2_Missense_Mutation_p.E480K|RHOT1_uc002hha.2_Missense_Mutation_p.E353K|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_Missense_Mutation_p.E353K|RHOT1_uc010wby.1_Missense_Mutation_p.E480K|RHOT1_uc002hhb.2_Missense_Mutation_p.E459K|RHOT1_uc002hgv.2_Missense_Mutation_p.E480K	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	480	Miro 2.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				CTCAGAATCGGAATTTCTAAC	0.303													17	27					0	0	0.004007	0	0
ACCN1	40	broad.mit.edu	37	17	31438945	31438945	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:31438945C>T	uc002hhu.2	-	2	970	c.696G>A	c.(694-696)TGG>TGA	p.W232*	ACCN1_uc002hht.2_Nonsense_Mutation_p.W283*	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	232	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CTGTCTCTCCCCAGATGGGCA	0.617													26	80					0	0	0.006320	0	0
CCL2	6347	broad.mit.edu	37	17	32583826	32583826	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:32583826A>G	uc002hhy.2	+	3	353	c.280A>G	c.(280-282)ACC>GCC	p.T94A		NM_002982	NP_002973	P13500	CCL2_HUMAN	small inducible cytokine A2 precursor	94					angiogenesis|anti-apoptosis|apoptotic cell clearance|astrocyte cell migration|cell adhesion|cellular response to interferon-gamma|cellular response to interleukin-1|cellular response to lipopolysaccharide|cellular response to tumor necrosis factor|G-protein signaling, coupled to cyclic nucleotide second messenger|helper T cell extravasation|humoral immune response|inflammatory response|JAK-STAT cascade|macrophage chemotaxis|monocyte chemotaxis|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of T cell activation|viral genome replication	extracellular space	CCR2 chemokine receptor binding|chemokine activity|protein kinase activity|signal transducer activity			pancreas(1)	1	Breast(3;0.00224)	Ovarian(249;0.0694)|Breast(31;0.151)|Lung NSC(157;0.153)		UCEC - Uterine corpus endometrioid carcinoma (308;0.000241)|BRCA - Breast invasive adenocarcinoma(366;0.0103)	Atorvastatin(DB01076)|Danazol(DB01406)|Mimosine(DB01055)|Simvastatin(DB00641)	GGACAAGCAAACCCAAACTCC	0.493													7	30					0	0	0.004482	0	0
CCL7	6354	broad.mit.edu	37	17	32598743	32598743	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:32598743C>T	uc002hhz.2	+	3	292	c.222C>T	c.(220-222)ATC>ATT	p.I74I	CCL7_uc010ctf.2_RNA	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	74					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		ACAAGGAGATCTGTGCTGACC	0.483													23	66					0	0	0.003954	0	0
MMP28	79148	broad.mit.edu	37	17	34095331	34095331	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:34095331C>T	uc002hjy.1	-	8	1177	c.918G>A	c.(916-918)TGG>TGA	p.W306*	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	306					proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGTAGGAGTCCCAGGTCTCAA	0.552													26	44					0	0	0.004656	0	0
SYNRG	11276	broad.mit.edu	37	17	35898497	35898497	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:35898497A>G	uc002hoa.2	-	18	3529	c.3446T>C	c.(3445-3447)TTA>TCA	p.L1149S	SYNRG_uc010wde.1_Missense_Mutation_p.L1071S|SYNRG_uc010wdf.1_Missense_Mutation_p.L1071S|SYNRG_uc002hoc.2_Missense_Mutation_p.L1070S|SYNRG_uc002hoe.2_Missense_Mutation_p.L1071S|SYNRG_uc002hod.2_Missense_Mutation_p.L1026S|SYNRG_uc010wdg.1_Missense_Mutation_p.L943S|SYNRG_uc002hob.2_Missense_Mutation_p.L1149S	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	1149					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						GATTCCATTTAAGGTATCATT	0.303													4	174					0	0	0.003610	0	0
STAC2	342667	broad.mit.edu	37	17	37371268	37371268	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:37371268C>T	uc002hrs.2	-	6	927	c.708G>A	c.(706-708)CGG>CGA	p.R236R	STAC2_uc010cvt.2_Silent_p.R94R	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	SH3 and cysteine rich domain 2	236					intracellular signal transduction		metal ion binding			pancreas(1)	1						TCAGCTCATCCCGCTCACTCT	0.627													54	154					0	0	0.003610	0	0
CASC3	22794	broad.mit.edu	37	17	38296815	38296815	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:38296815G>C	uc010cwt.1	+	1	309	c.14G>C	c.(13-15)CGG>CCG	p.R5P	CASC3_uc010cws.1_Missense_Mutation_p.R5P|CASC3_uc002hue.2_Missense_Mutation_p.R5P	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	5					mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						GCGGACCGGCGGCGGCAGCGC	0.527													12	66					0	0	0.003163	0	0
TOP2A	7153	broad.mit.edu	37	17	38574030	38574030	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:38574030G>A	uc002huq.2	-	1	140	c.14C>T	c.(13-15)CCA>CTA	p.P5L		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	5					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	TACCTGCAATGGTGACACTTC	0.672													4	31					0	0	0.006214	0	0
KRT10	3858	broad.mit.edu	37	17	38975816	38975816	+	Silent	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:38975816C>A	uc002hvi.2	-	6	1352	c.1326G>T	c.(1324-1326)CTG>CTT	p.L442L	KRT10_uc010cxd.2_RNA|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	442	Rod.|Gly-rich.|Coil 2.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				TTTCATTCTCCAGTCGGATCT	0.408													66	51					5.40308e-56	5.89278e-56	0.003610	1	0
KRTAP9-2	83899	broad.mit.edu	37	17	39382963	39382963	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:39382963C>T	uc002hwf.2	+	1	64	c.57C>T	c.(55-57)TGC>TGT	p.C19C		NM_031961	NP_114167	Q9BYQ4	KRA92_HUMAN	keratin associated protein 9.2	19	3.|17 X 5 AA repeats of C-C-[RQVSGE]-[SPTQ]- [TASP].					keratin filament	protein binding			upper_aerodigestive_tract(1)	1		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCACCTGCTGCAGGACCACCT	0.637													33	127					0	0	0.010771	0	0
KRTAP9-4	85280	broad.mit.edu	37	17	39406029	39406029	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:39406029C>T	uc002hwi.2	+	1	91	c.57C>T	c.(55-57)TGC>TGT	p.C19C	KRTAP9-9_uc010wfq.1_Intron	NM_033191	NP_149461	Q9BYQ2	KRA94_HUMAN	keratin associated protein 9-4	19	3.|15 X 5 AA repeats of C-C-[RQVGE]-[SPTN]- [TASPF].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCACCTGCTGCAGGACCACCT	0.617													18	129					0	0	0.005443	0	0
KRT38	8687	broad.mit.edu	37	17	39593779	39593779	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:39593779G>A	uc002hwq.1	-	7	1679	c.1256C>T	c.(1255-1257)CCG>CTG	p.P419L		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	419	Tail.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				CGTGGAGCACGGATTGCAGGG	0.632													12	12					0	0	0.001368	0	0
HAP1	9001	broad.mit.edu	37	17	39890869	39890869	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:39890869C>T	uc002hxm.1	-	1	30	c.18G>A	c.(16-18)TTG>TTA	p.L6L	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Silent_p.L6L|HAP1_uc002hxo.1_Silent_p.L6L|HAP1_uc002hxp.1_Silent_p.L6L	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	6					brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			AGCACCGGCCCAACCTCTTCG	0.736													4	9					0	0	0.000602	0	0
ACLY	47	broad.mit.edu	37	17	40063700	40063700	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:40063700G>A	uc002hyg.2	-	7	905	c.742C>T	c.(742-744)CCA>TCA	p.P248S	ACLY_uc002hyh.2_Missense_Mutation_p.P248S|ACLY_uc002hyi.2_Missense_Mutation_p.P302S|ACLY_uc010wfx.1_Missense_Mutation_p.P302S|ACLY_uc010wfy.1_Intron	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	248					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CTTACCTCTGGATATGCCTCC	0.597													27	98					0	0	0.005443	0	0
PTRF	284119	broad.mit.edu	37	17	40556804	40556804	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:40556804G>A	uc002hzo.2	-	2	1233	c.1074C>T	c.(1072-1074)GCC>GCT	p.A358A	PTRF_uc010wgi.1_Silent_p.A340A	NM_012232	NP_036364	Q6NZI2	PTRF_HUMAN	polymerase I and transcript release factor	358					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription initiation from RNA polymerase I promoter	caveola|cytosol|endoplasmic reticulum|microsome|mitochondrion|nucleoplasm	protein binding|rRNA primary transcript binding			breast(1)	1		all_cancers(22;0.00146)|Breast(137;0.00116)|all_epithelial(22;0.0134)		BRCA - Breast invasive adenocarcinoma(366;0.193)		GCAGGTCGCCGGCCTCCCCGC	0.711													7	16					0	0	0.004482	0	0
TUBG2	27175	broad.mit.edu	37	17	40811916	40811916	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:40811916G>A	uc010wgr.1	+	2	370	c.114G>A	c.(112-114)GAG>GAA	p.E38E	TUBG2_uc002iaq.2_5'UTR|TUBG2_uc002iar.2_5'UTR|TUBG2_uc002ias.2_5'UTR|TUBG2_uc002iap.2_5'UTR	NM_016437	NP_057521	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	38					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		GCATCGTGGAGGAATTCGCCA	0.667													32	49					0	0	0.006999	0	0
CD300LG	146894	broad.mit.edu	37	17	41939261	41939261	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:41939261G>A	uc002iem.2	+	7	1022	c.981G>A	c.(979-981)TCG>TCA	p.S327S		NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	327	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TGGGCTTCTCGAAGTTTGTCT	0.607													16	19					0	0	0.006122	0	0
GPATCH8	23131	broad.mit.edu	37	17	42478254	42478254	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:42478254G>A	uc002igw.1	-	8	1255	c.1191C>T	c.(1189-1191)ATC>ATT	p.I397I	GPATCH8_uc002igv.1_Silent_p.I319I|GPATCH8_uc010wiz.1_Silent_p.I319I	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	397						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GTGCTGGGGGGATGTAGTGGT	0.433											OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	86					0	0	0.009718	0	0
EFTUD2	9343	broad.mit.edu	37	17	42929142	42929142	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:42929142G>A	uc002ihn.2	-	27	3020	c.2759C>T	c.(2758-2760)CCC>CTC	p.P920L	EFTUD2_uc010wje.1_Missense_Mutation_p.P885L|EFTUD2_uc010wjf.1_Missense_Mutation_p.P910L	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	920						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TGGCTCCAAGGGGCGGATGAC	0.557													6	21					0	0	0.004482	0	0
C17orf46	124783	broad.mit.edu	37	17	43332872	43332872	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:43332872G>A	uc002iis.1	-	4	773	c.677C>T	c.(676-678)CCC>CTC	p.P226L	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.P205L	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	226								p.P226L(1)		large_intestine(1)|ovary(1)	2						GGACAGGAGGGGGCTTGGTGC	0.632													22	19					0	0	0.012319	0	0
HOXB1	3211	broad.mit.edu	37	17	46608044	46608044	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:46608044G>A	uc002ink.1	-	1	229	c.223C>T	c.(223-225)CCC>TCC	p.P75S		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	75						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTGGGGAAGGGCACCCCCAGG	0.677													27	70					0	0	0.004656	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47236441	47236441	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:47236441G>A	uc002ion.2	+	6	780	c.721G>A	c.(721-723)GAT>AAT	p.D241N	B4GALNT2_uc010wlt.1_Missense_Mutation_p.D155N|B4GALNT2_uc010wlu.1_Missense_Mutation_p.D181N	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	241	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CACCCTTGCTGATGTCCCAGA	0.517													57	138					0	0	0.003610	0	0
SLC35B1	10237	broad.mit.edu	37	17	47783627	47783627	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:47783627G>A	uc002iph.1	-	3	365	c.278C>T	c.(277-279)TCC>TTC	p.S93F	SLC35B1_uc002ipi.1_Missense_Mutation_p.S26F|SLC35B1_uc002ipj.1_5'UTR|SLC35B1_uc010wly.1_Missense_Mutation_p.S93F	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	93	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						ACCCAGATAGGAGATAGAACA	0.468													22	46					0	0	0.002299	0	0
SPATA20	64847	broad.mit.edu	37	17	48628457	48628457	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:48628457G>A	uc002irf.2	+	11	1575	c.1434G>A	c.(1432-1434)CGG>CGA	p.R478R	SPATA20_uc002irc.2_Silent_p.R145R|SPATA20_uc002ire.2_Silent_p.R434R|SPATA20_uc002ird.2_Silent_p.R494R|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	478					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			AGGCCGTGCGGACCTTGCTCA	0.642											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	27					0	0	0.003163	0	0
PCTP	58488	broad.mit.edu	37	17	53851150	53851151	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:53851150_53851151CC>TT	uc002iul.3	+	4	514_515	c.405_406CC>TT	c.(403-408)GCCCGG>GCTTGG	p.R136W	PCTP_uc002ium.3_Missense_Mutation_p.R64W|PCTP_uc010dcg.2_Intron|PCTP_uc010dch.2_RNA	NM_021213	NP_067036	Q9UKL6	PPCT_HUMAN	phosphatidylcholine transfer protein isoform 1	136	START.					cytosol	phosphatidylcholine binding|phosphatidylcholine transmembrane transporter activity			lung(1)	1			BRCA - Breast invasive adenocarcinoma(1;0.00207)			TGATCCTGGCCCGGAGCACCTC	0.589													11	37					0	0	0.004672	0	0
OR4D2	124538	broad.mit.edu	37	17	56247763	56247763	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:56247763G>A	uc010wnp.1	+	1	747	c.747G>A	c.(745-747)ATG>ATA	p.M249I		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGGTTTCCATGATCTTCGTTC	0.532													41	133					0	0	0.013114	0	0
OR4D2	124538	broad.mit.edu	37	17	56247888	56247888	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:56247888A>G	uc010wnp.1	+	1	872	c.872A>G	c.(871-873)AAC>AGC	p.N291S		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACCCTGAGGAACCAGGACATG	0.517													38	134					0	0	0.005524	0	0
RNF43	54894	broad.mit.edu	37	17	56432331	56432331	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:56432331G>A	uc002iwf.2	-	9	4281	c.2325C>T	c.(2323-2325)CTC>CTT	p.L775L	RNF43_uc010wnv.1_Silent_p.L734L|RNF43_uc002iwh.3_Silent_p.L775L|RNF43_uc002iwg.3_Silent_p.L775L|SUPT4H1_uc002iwd.1_5'Flank|SUPT4H1_uc002iwe.1_5'Flank	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	ring finger protein 43 precursor	775	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			ovary(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACAGCTCCTCGAGTTCCTCCT	0.572													21	44					0	0	0.003330	0	0
TEX14	56155	broad.mit.edu	37	17	56665017	56665017	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:56665017C>T	uc010dcz.1	-	17	2849	c.2731G>A	c.(2731-2733)GAA>AAA	p.E911K	TEX14_uc002iwr.1_Missense_Mutation_p.E905K|TEX14_uc002iws.1_Missense_Mutation_p.E905K|TEX14_uc010dda.1_Missense_Mutation_p.E685K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	911						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAAACAGGTTCCACACTCATC	0.413											OREG0024616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	62					0	0	0.012319	0	0
C17orf71	55181	broad.mit.edu	37	17	57288417	57288417	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:57288417C>T	uc002ixi.2	+	1	1047	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	335					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					ACCAAGCTTTCGTGTACATAG	0.502													27	62					0	0	0.007291	0	0
MRC2	9902	broad.mit.edu	37	17	60742216	60742216	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:60742216C>T	uc002jad.2	+	2	828	c.426C>T	c.(424-426)TCC>TCT	p.S142S	MRC2_uc002jac.2_Silent_p.S142S	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	142	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCAACATATCCAAGCCTGGCA	0.612													21	52					0	0	0.002299	0	0
FTSJ3	117246	broad.mit.edu	37	17	61902690	61902690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:61902690C>T	uc002jbz.2	-	6	585	c.507G>A	c.(505-507)TGG>TGA	p.W169*	FTSJ3_uc002jca.2_Nonsense_Mutation_p.W169*|PSMC5_uc002jcb.2_5'Flank|PSMC5_uc010ddy.2_5'Flank|PSMC5_uc010ddz.2_5'Flank|PSMC5_uc002jcc.2_5'Flank|PSMC5_uc002jcd.2_5'Flank	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	169					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GCTGAAAGATCCATAGCAGAG	0.527													25	74					0	0	0.003954	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62855684	62855684	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:62855684A>C	uc002jey.2	-	11	5111	c.4580T>G	c.(4579-4581)CTT>CGT	p.L1527R	LRRC37A3_uc010wqg.1_Missense_Mutation_p.L645R|LRRC37A3_uc002jex.1_Missense_Mutation_p.L504R|LRRC37A3_uc010wqf.1_Missense_Mutation_p.L565R|LRRC37A3_uc010dek.1_Missense_Mutation_p.L533R	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1527	Extracellular (Potential).					integral to membrane					0						CCCACTGAGAAGCTTCATCAG	0.512													106	299					0	0	0.003610	0	0
CACNG5	27091	broad.mit.edu	37	17	64880763	64880763	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:64880763C>T	uc010wqi.1	+	5	792	c.555C>T	c.(553-555)TCC>TCT	p.S185S	CACNG5_uc002jfr.2_Silent_p.S185S|CACNG5_uc010wqj.1_Silent_p.S185S	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	185	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CCGCCATCTCCTTCCTTTTAA	0.562													29	64					0	0	0.007291	0	0
LOC651250	651250	broad.mit.edu	37	17	66130697	66130697	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:66130697C>T	uc002jgq.2	+	6		c.9820C>T			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						GGAAGAAGCCCGACTGGCCGT	0.622													5	5					0	0	0.000602	0	0
GPR142	350383	broad.mit.edu	37	17	72363866	72363867	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:72363866_72363867GG>AA	uc010wqy.1	+	1	222_223	c.222_223GG>AA	c.(220-225)AAGGAC>AAAAAC	p.D75N	GPR142_uc010wqx.1_5'UTR	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	75	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGCCATCCAAGGACTCCAGCAG	0.564													24	21					0	0	0.004672	0	0
GPR142	350383	broad.mit.edu	37	17	72368006	72368006	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:72368006G>A	uc010wqy.1	+	4	656	c.656G>A	c.(655-657)GGA>GAA	p.G219E	GPR142_uc010wqx.1_Missense_Mutation_p.G131E	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	219	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTCCTGCAGGGAGCAGTGCTG	0.632													9	39					0	0	0.008291	0	0
CD300LD	100131439	broad.mit.edu	37	17	72584678	72584678	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:72584678C>T	uc002jkz.2	-	2	380	c.351G>A	c.(349-351)GGG>GGA	p.G117G	C17orf77_uc002jla.1_Intron	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	117	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity				0						GAACTTTGACCCCAAGATCAA	0.483													28	107					0	0	0.010818	0	0
OTOP2	92736	broad.mit.edu	37	17	72920757	72920757	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:72920757G>A	uc010wrp.1	+	3	119	c.30G>A	c.(28-30)AAG>AAA	p.K10K	USH1G_uc002jme.1_5'Flank|USH1G_uc010wro.1_5'Flank|OTOP2_uc002jmf.1_Silent_p.K10K	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	10						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					AGGGCCCCAAGGAGAGCCCCC	0.687													13	12					0	0	0.001855	0	0
SLC16A5	9121	broad.mit.edu	37	17	73096434	73096434	+	Missense_Mutation	SNP	C	T	T	rs149877409		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:73096434C>T	uc002jmr.2	+	5	1048	c.676C>T	c.(676-678)CAC>TAC	p.H226Y	SLC16A5_uc002jms.1_Missense_Mutation_p.H226Y|SLC16A5_uc002jmt.2_Missense_Mutation_p.H226Y|SLC16A5_uc002jmu.2_Missense_Mutation_p.H226Y|SLC16A5_uc010wrt.1_Missense_Mutation_p.H266Y	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	226	Cytoplasmic (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	CATCCAGCGCCACCTGGCCTT	0.632													13	30					0	0	0.001855	0	0
UNK	85451	broad.mit.edu	37	17	73780868	73780868	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:73780868C>T	uc002jpm.2	+	2	135	c.135C>T	c.(133-135)TTC>TTT	p.F45F	UNK_uc002jpn.2_RNA|UNK_uc002jpo.2_RNA	NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	Error:Variant_position_missing_in_Q9C0B0_after_alignment							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCTTCACGTTCTCGTGGCGCG	0.612													8	25					0	0	0.004482	0	0
CDK3	1018	broad.mit.edu	37	17	73998155	73998155	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:73998155C>T	uc010dgt.2	+	4	323	c.247C>T	c.(247-249)CTC>TTC	p.L83F	CDK3_uc002jqg.3_Missense_Mutation_p.L111F	NM_001258	NP_001249	Q00526	CDK3_HUMAN	cyclin-dependent kinase 3	83	Protein kinase.				cell division|cell proliferation|mitosis		ATP binding|cyclin-dependent protein kinase activity			central_nervous_system(1)	1						GTTTGAGTTCCTCAGCCAGGA	0.572													36	28					0	0	0.003755	0	0
EVPL	2125	broad.mit.edu	37	17	74004335	74004335	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:74004335G>A	uc002jqi.2	-	22	5179	c.4951C>T	c.(4951-4953)CAG>TAG	p.Q1651*	EVPL_uc010wss.1_Nonsense_Mutation_p.Q1673*|EVPL_uc010wst.1_Nonsense_Mutation_p.Q1121*	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1651	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCGTAGATCTGGTCCTTCTCG	0.672													28	26					0	0	0.004656	0	0
EVPL	2125	broad.mit.edu	37	17	74011352	74011352	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:74011352G>A	uc002jqi.2	-	16	2212	c.1984C>T	c.(1984-1986)CCT>TCT	p.P662S	EVPL_uc010wss.1_Missense_Mutation_p.P684S|EVPL_uc010wst.1_Missense_Mutation_p.P132S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	662	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGTTCAGCAGGGATGGGGGCC	0.687													3	8					0	0	0.004672	0	0
RNF157	114804	broad.mit.edu	37	17	74155521	74155521	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:74155521G>A	uc002jqz.2	-	12	1268	c.1199C>T	c.(1198-1200)TCA>TTA	p.S400L	RNF157_uc002jra.2_Missense_Mutation_p.S400L	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	400							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			ACTGCCATATGAAGGGAGCAT	0.592													60	41					0	0	0.003610	0	0
RHBDF2	79651	broad.mit.edu	37	17	74477580	74477580	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:74477580C>T	uc002jrq.1	-	3	320	c.27G>A	c.(25-27)GGG>GGA	p.G9G	RHBDF2_uc002jrp.1_Silent_p.G9G|RHBDF2_uc002jrr.1_5'UTR|RHBDF2_uc010wtf.1_Silent_p.G9G|RHBDF2_uc002jrs.1_Silent_p.G9G	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	9	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						AGGACACGCTCCCGCCATTCT	0.682													15	17					0	0	0.003163	0	0
AFMID	125061	broad.mit.edu	37	17	76202102	76202102	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:76202102C>T	uc002jva.3	+	10	871	c.856C>T	c.(856-858)CTG>TTG	p.L286L	AFMID_uc002jvb.3_Silent_p.I93I|AFMID_uc002juz.3_Silent_p.L291L	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	286						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			TGTTGAGAATCTGACCCAGAA	0.552													12	34					0	0	0.001855	0	0
DNAH17	8632	broad.mit.edu	37	17	76455098	76455098	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:76455098G>T	uc010dhp.1	-	6	1068	c.846C>A	c.(844-846)ATC>ATA	p.I282I	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCTTGTTTTTGATCCGGGACA	0.582													23	72					7.87624e-14	8.51932e-14	0.002780	1	0
LGALS3BP	3959	broad.mit.edu	37	17	76970772	76970772	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:76970772T>C	uc002jwh.2	-	4	553	c.374A>G	c.(373-375)AAT>AGT	p.N125S	LGALS3BP_uc002jwi.2_Intron|LGALS3BP_uc010dhr.2_Intron	NM_005567	NP_005558	Q08380	LG3BP_HUMAN	galectin 3 binding protein	125					cell adhesion|cellular defense response	extracellular space|membrane|proteinaceous extracellular matrix	protein binding|scavenger receptor activity			central_nervous_system(3)|ovary(1)	4			BRCA - Breast invasive adenocarcinoma(99;0.0677)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CCGCTCACCATTGGTGCAGAC	0.692													12	15					0	0	0.001855	0	0
CANT1	124583	broad.mit.edu	37	17	76993529	76993529	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:76993529A>G	uc002jwn.2	-	4	615	c.176T>C	c.(175-177)CTC>CCC	p.L59P	CANT1_uc002jwk.2_Missense_Mutation_p.L59P|CANT1_uc002jwj.2_Missense_Mutation_p.L59P|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	59	Helical; Signal-anchor for type II membrane protein; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			GTGGGAGCAGAGCAGCCAGAG	0.687			T	ETV4	prostate								18	15					0	0	0.006122	0	0
CARD14	79092	broad.mit.edu	37	17	78175584	78175584	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:78175584G>A	uc002jxw.1	+	14	2088	c.1893G>A	c.(1891-1893)CTG>CTA	p.L631L	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Silent_p.L631L|CARD14_uc010wud.1_Intron	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	631	PDZ.			DYEASEPLFKAVLEDTTLEEAVGLLRRVDGFCCLSVKVNTD GYKRLLQDLEAK -> SRARPLLSPGLLMGTVAAGGVTQAD FTSPRRCRSTLGWASALSWADVKRSAHL (in Ref. 4; AAH01326).	activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			AGGCAGTCCTGGAGGACACGA	0.587													22	74					0	0	0.010504	0	0
AATK	9625	broad.mit.edu	37	17	79108181	79108182	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:79108181_79108182CC>TT	uc010dia.2	-	2	255_256	c.175_176GG>AA	c.(175-177)GGT>AAT	p.G59N	MIR1250_hsa-mir-1250|MI0006385_5'Flank	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	59				MLACLCCKKGGIGFK -> HQVKVQGCWGRWRWQ (in Ref. 2).		integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GAACCCGATACCGCCCTTCTTA	0.649													9	30					0	0	0.004672	0	0
C17orf90	339229	broad.mit.edu	37	17	79633556	79633556	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:79633556G>A	uc002kba.2	-	1	63	c.52C>T	c.(52-54)CGT>TGT	p.R18C	C17orf90_uc002kbb.2_Missense_Mutation_p.R18C|CCDC137_uc002kbc.3_5'Flank|CCDC137_uc002kbd.2_5'Flank	NM_001039842	NP_001034931	Q5BKU9	CQ090_HUMAN	hypothetical protein LOC339229	18				R -> L (in Ref. 1; AC139530).							0	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GCCGAGCCACGGACCGCGGCG	0.766													3	9					0	0	0.009096	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79974915	79974915	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:79974915C>T	uc002kcx.2	+	15	1671	c.1574C>T	c.(1573-1575)CCT>CTT	p.P525L	ASPSCR1_uc002kcw.1_Missense_Mutation_p.P525L|ASPSCR1_uc002kcy.2_Missense_Mutation_p.P619L|ASPSCR1_uc002kcz.2_Missense_Mutation_p.P419L|ASPSCR1_uc002kda.2_Missense_Mutation_p.P473L	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	525							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CTGGTCCCCCCTGAGCCCATC	0.692			T	TFE3	alveolar soft part sarcoma								12	16					0	0	0.004007	0	0
CSNK1D	1453	broad.mit.edu	37	17	80209309	80209309	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:80209309G>A	uc002kej.2	-	6	1147	c.831C>T	c.(829-831)TTC>TTT	p.F277F	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Silent_p.F277F|CSNK1D_uc002kei.2_Silent_p.F277F|CSNK1D_uc010wvj.1_Silent_p.F74F|CSNK1D_uc010dil.2_RNA|CSNK1D_uc002keh.2_Silent_p.F142F|CSNK1D_uc010dim.1_Silent_p.F74F	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	277	Protein kinase.				circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			CCTGGCGATGGAACAGATTCC	0.522													15	28					0	0	0.004990	0	0
SMCHD1	23347	broad.mit.edu	37	18	2750448	2750448	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:2750448C>T	uc002klm.3	+	32	4297	c.4108C>T	c.(4108-4110)CGT>TGT	p.R1370C	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1370					chromosome organization		ATP binding				0						AAAACCCGTTCGTCTCAATGT	0.348													6	20					0	0	0.001984	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891755	2891755	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:2891755G>A	uc002kln.2	+	4	1789	c.1630G>A	c.(1630-1632)GAC>AAC	p.D544N		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	544					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CCACCTGAAGGACAAAGTTCA	0.542													29	53					0	0	0.008361	0	0
APCDD1	147495	broad.mit.edu	37	18	10468492	10468492	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:10468492C>T	uc002kom.3	+	2	439	c.85C>T	c.(85-87)CAT>TAT	p.H29Y		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	29	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		TGCCCTCCTTCATCCAGACAG	0.488													63	119					0	0	0.003610	0	0
ROCK1	6093	broad.mit.edu	37	18	18534804	18534804	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:18534804G>A	uc002kte.2	-	31	4734	c.3793C>T	c.(3793-3795)CAT>TAT	p.H1265Y		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	1265	PH.|Auto-inhibitory.|Phorbol-ester/DAG-type.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CACTTAACATGGCATCTTCGA	0.408													19	44					0	0	0.006122	0	0
AQP4	361	broad.mit.edu	37	18	24436411	24436411	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:24436411C>T	uc002kwa.2	-	5	799	c.736G>A	c.(736-738)GGC>AGC	p.G246S	AQP4_uc002kvz.2_Missense_Mutation_p.G224S	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	246	Helical; (Potential).			G -> A (in Ref. 1; AAC52112).	cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					TCATAAAGGCCACCAGCGAGG	0.433													43	64					0	0	0.006999	0	0
DSG4	147409	broad.mit.edu	37	18	28965108	28965108	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:28965108G>A	uc002kwq.2	+	2	193	c.58G>A	c.(58-60)GAA>AAA	p.E20K	DSG4_uc002kwr.2_Missense_Mutation_p.E20K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	20					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGTGGTGATGGAAGTAAACAG	0.194													14	26					0	0	0.003163	0	0
DSG3	1830	broad.mit.edu	37	18	29055630	29055630	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:29055630G>A	uc002kws.2	+	16	2516	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	DSG3_uc002kwt.2_Missense_Mutation_p.E85K	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	803	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTGTGCGGAGGAAGACGATGG	0.423													27	42					0	0	0.005443	0	0
ASXL3	80816	broad.mit.edu	37	18	31319168	31319168	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:31319168A>G	uc010dmg.1	+	11	1855	c.1800A>G	c.(1798-1800)GAA>GAG	p.E600E	ASXL3_uc002kxq.2_Silent_p.E307E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	600					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACCCTGAAGAACAGCTTTCAG	0.478													6	14					0	0	0.001168	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224041	43224041	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:43224041C>T	uc010dnj.2	+	11	1588	c.1267C>T	c.(1267-1269)CCA>TCA	p.P423S	SLC14A2_uc002lbb.2_Missense_Mutation_p.P423S|SLC14A2_uc002lbe.2_Missense_Mutation_p.P423S	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	423						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CTTCAGACTCCCACTCAGCAA	0.567													13	127					0	0	0.002450	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555345	44555345	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:44555345G>A	uc010xdb.1	-	1	1105	c.869C>T	c.(868-870)GCC>GTC	p.A290V	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GGAGGTCATGGCCTCAAAAGC	0.622													21	252					0	0	0.008361	0	0
ALPK2	115701	broad.mit.edu	37	18	56202572	56202572	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:56202572C>T	uc002lhj.3	-	5	5061	c.4847G>A	c.(4846-4848)GGA>GAA	p.G1616E	ALPK2_uc002lhk.1_Missense_Mutation_p.G947E	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1616							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGTGACATTTCCTTCAGGAGA	0.448													22	52					0	0	0.010504	0	0
CCBE1	147372	broad.mit.edu	37	18	57136739	57136739	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:57136739C>T	uc002lib.2	-	4	436	c.366G>A	c.(364-366)GAG>GAA	p.E122E		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	122					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				TCCGGTGTCTCTCCCGGTCAT	0.527													55	96					0	0	0.003610	0	0
SERPINB13	5275	broad.mit.edu	37	18	61259698	61259698	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:61259698C>T	uc002ljc.2	+	4	510	c.342C>T	c.(340-342)TAC>TAT	p.Y114Y	SERPINB13_uc002ljd.2_5'UTR|SERPINB13_uc010xep.1_Silent_p.Y123Y|SERPINB13_uc010xeq.1_Intron|SERPINB13_uc010xer.1_Intron	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	114					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						AAAAAACATACCTCTTCCTTC	0.408													16	20					0	0	0.008871	0	0
SERPINB13	5275	broad.mit.edu	37	18	61264581	61264581	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:61264581G>A	uc002ljc.2	+	8	1328	c.1160G>A	c.(1159-1161)AGA>AAA	p.R387K	SERPINB13_uc002ljd.2_Missense_Mutation_p.R251K|SERPINB13_uc010xep.1_Missense_Mutation_p.R396K|SERPINB13_uc010xeq.1_Missense_Mutation_p.R208K|SERPINB13_uc010xer.1_Missense_Mutation_p.R208K	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	387					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						TTCTTCGGCAGATTTTCTTCT	0.418													36	44					0	0	0.008740	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324197	61324197	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:61324197C>T	uc002ljg.2	-	6	662	c.636G>A	c.(634-636)ATG>ATA	p.M212I	SERPINB3_uc002lji.2_Missense_Mutation_p.M212I|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	212					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATTGCCTCATCATCTGTATGG	0.373													10	16					0	0	0.010729	0	0
C18orf55	29090	broad.mit.edu	37	18	71816127	71816127	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:71816127C>T	uc010dqr.1	+	1	382	c.84C>T	c.(82-84)ATC>ATT	p.I28I	FBXO15_uc002lle.2_5'Flank|FBXO15_uc002llf.2_5'Flank	NM_014177	NP_054896	Q9BVV7	TI21L_HUMAN	hypothetical protein LOC29090 precursor	28					protein transport|transmembrane transport	integral to membrane|mitochondrial membrane					0		Esophageal squamous(42;0.0746)|Prostate(75;0.157)|Melanoma(33;0.211)				TGCCATACATCGTGCTTAACA	0.458													74	133					0	0	0.003610	0	0
SALL3	27164	broad.mit.edu	37	18	76754424	76754424	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:76754424G>A	uc002lmt.2	+	2	2433	c.2433G>A	c.(2431-2433)CTG>CTA	p.L811L	SALL3_uc010dra.2_Silent_p.L418L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	811					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		ACGCTGAGCTGAAGGACGCGG	0.662													7	13					0	0	0.004482	0	0
CTDP1	9150	broad.mit.edu	37	18	77477837	77477837	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr18:77477837C>T	uc002lnh.1	+	10	2385	c.2238C>T	c.(2236-2238)GAC>GAT	p.D746D	CTDP1_uc002lni.1_Silent_p.D746D|CTDP1_uc010drd.1_Silent_p.D746D	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	746					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CCTTTCCCGACCGGGAGGGTG	0.672													21	41					0	0	0.002780	0	0
GRIN3B	116444	broad.mit.edu	37	19	1008150	1008150	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:1008150G>A	uc002lqo.1	+	6	2326	c.2326G>A	c.(2326-2328)GGA>AGA	p.G776R	uc002lqp.1_Intron	NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	776	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CTATGGGATCGGACTGCCCCA	0.657													5	6					0	0	0.000602	0	0
GAMT	2593	broad.mit.edu	37	19	1398967	1398967	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:1398967G>A	uc002lsj.2	-	5	595	c.518C>T	c.(517-519)TCC>TTC	p.S173F	uc002lsi.1_5'Flank|GAMT_uc002lsk.2_Missense_Mutation_p.S173F	NM_000156	NP_000147	Q14353	GAMT_HUMAN	guanidinoacetate N-methyltransferase isoform a	173					creatine biosynthetic process|muscle contraction	cytosol	guanidinoacetate N-methyltransferase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Lung NSC(49;0.000195)|Breast(49;0.000231)|all_lung(49;0.000247)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Creatine(DB00148)	CTCCCCCCAGGAGGTGAGGTT	0.607													21	41					0	0	0.003954	0	0
ATP8B3	148229	broad.mit.edu	37	19	1784935	1784935	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:1784935G>A	uc002ltw.2	-	28	3777	c.3543C>T	c.(3541-3543)CTC>CTT	p.L1181L	ATP8B3_uc002ltv.2_Silent_p.L1144L|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1181	Extracellular (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACATCACGCTGAGGTCGGCAT	0.577													11	14					0	0	0.001368	0	0
MOBKL2A	126308	broad.mit.edu	37	19	2076990	2076990	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:2076990G>A	uc002luu.2	-	2	603	c.444C>T	c.(442-444)TTC>TTT	p.F148F	MOBKL2A_uc002luv.2_Silent_p.F148F	NM_130807	NP_570719	Q96BX8	MOL2A_HUMAN	MOB-LAK	148						intracellular	metal ion binding			lung(1)	1		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGTCTGCAGGAAGTTCTTGG	0.612													6	19					0	0	0.004482	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2416539	2416539	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:2416539G>A	uc010xgx.1	+	11	1647	c.1647G>A	c.(1645-1647)ACG>ACA	p.T549T		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	549	Extracellular (Potential).|Peptidase S1 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCATAGCACGAAGGTGGAGC	0.687													9	11					0	0	0.010729	0	0
CELF5	60680	broad.mit.edu	37	19	3281301	3281301	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:3281301C>T	uc002lxm.2	+	6	745	c.708C>T	c.(706-708)TCC>TCT	p.S236S	CELF5_uc002lxl.1_Silent_p.S236S|CELF5_uc010dtj.1_Silent_p.S236S|CELF5_uc010xhg.1_Silent_p.S122S|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	236					mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						TGACGCCGTCCCTCACATTGC	0.647													38	61					0	0	0.010771	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600423	3600423	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:3600423G>A	uc002lyg.1	-	2	424	c.210C>T	c.(208-210)CTC>CTT	p.L70L	TBXA2R_uc002lye.1_Silent_p.L70L	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	70	Helical; Name=2; (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	CGGTGAGGACGAGGCCGCAGA	0.711													8	22					0	0	0.004482	0	0
ANKRD24	170961	broad.mit.edu	37	19	4219743	4219743	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:4219743G>A	uc010dtt.1	+	19	3435	c.3159G>A	c.(3157-3159)GAG>GAA	p.E1053E		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1053	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		AGGCCAAGGAGAAGGACAAGA	0.572													15	27					0	0	0.004007	0	0
PTPRS	5802	broad.mit.edu	37	19	5215357	5215357	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:5215357G>A	uc002mbv.2	-	28	4495	c.4261C>T	c.(4261-4263)CGC>TGC	p.R1421C	PTPRS_uc002mbu.1_Missense_Mutation_p.R990C|PTPRS_uc010xin.1_Missense_Mutation_p.R963C|PTPRS_uc002mbw.2_Missense_Mutation_p.R1383C|PTPRS_uc002mbx.2_Missense_Mutation_p.R978C|PTPRS_uc002mby.2_Missense_Mutation_p.R974C	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1421	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TTGGCATAGCGGTTCTTCGGC	0.572													32	60					0	0	0.009535	0	0
DUS3L	56931	broad.mit.edu	37	19	5789331	5789332	+	Nonsense_Mutation	DNP	GG	AA	AA	rs144731277		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:5789331_5789332GG>AA	uc002mdc.2	-	3	883_884	c.786_787CC>TT	c.(784-789)GCCCAG>GCTTAG	p.Q263*	DUS3L_uc002mdd.2_Intron|DUS3L_uc010duk.2_5'UTR|DUS3L_uc010xiw.1_RNA	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	263					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						GGGACCTGCTGGGCACCACAGT	0.748													6	13					0	0	0.004672	0	0
ACSBG2	81616	broad.mit.edu	37	19	6165909	6165909	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:6165909C>T	uc002mef.1	+	7	848	c.621C>T	c.(619-621)ATC>ATT	p.I207I	ACSBG2_uc002mee.1_Silent_p.I20I|ACSBG2_uc002meg.1_Silent_p.I207I|ACSBG2_uc002meh.1_Silent_p.I207I|ACSBG2_uc002mei.1_Silent_p.I157I|ACSBG2_uc010xiz.1_Silent_p.I207I	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	207					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GCAGAAGTATCCCTGACACCC	0.547											OREG0025194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	42					0	0	0.008361	0	0
KHSRP	8570	broad.mit.edu	37	19	6418057	6418057	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:6418057C>T	uc002mer.3	-	10	1023	c.913G>A	c.(913-915)GAA>AAA	p.E305K		NM_003685	NP_003676	Q92945	FUBP2_HUMAN	KH-type splicing regulatory protein	305	Gly-rich.				mRNA processing|mRNA transport|regulation of transcription, DNA-dependent|RNA splicing, via transesterification reactions|transcription, DNA-dependent	cytosol|nucleus	DNA binding|protein binding|RNA binding			skin(1)	1						TGGTCACGTTCCCGGAGGATG	0.642											OREG0025200	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	25					0	0	0.010729	0	0
C3	718	broad.mit.edu	37	19	6684608	6684608	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:6684608G>A	uc002mfm.2	-	32	4145	c.4083C>T	c.(4081-4083)TTC>TTT	p.F1361F	C3_uc002mfl.2_Silent_p.F97F	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1361					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCTTGAGGTCGAATTTATTAC	0.483													31	45					0	0	0.003755	0	0
C3	718	broad.mit.edu	37	19	6702583	6702583	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:6702583C>T	uc002mfm.2	-	18	2315	c.2253G>A	c.(2251-2253)CTG>CTA	p.L751L		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	751					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGTCCTCATCCAGGTTACCTG	0.348													35	48					0	0	0.006999	0	0
SH2D3A	10045	broad.mit.edu	37	19	6763733	6763733	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:6763733G>A	uc002mft.2	-	2	221	c.27C>T	c.(25-27)GAC>GAT	p.D9D	SH2D3A_uc010xjg.1_Missense_Mutation_p.T4I	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	9					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						GGCCAGCAAGGTCTTCTCCAT	0.547													23	39					0	0	0.009535	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964377	7964377	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:7964377G>A	uc002mir.2	+	3	1071	c.970G>A	c.(970-972)GGA>AGA	p.G324R		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	324	Helical; (Potential).					integral to membrane				lung(1)|pancreas(1)	2						GTGCATCTACGGACTTACCTG	0.582													22	27					0	0	0.012319	0	0
MARCH2	51257	broad.mit.edu	37	19	8503369	8503369	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:8503369C>T	uc002mjv.2	+	6	1121	c.680C>T	c.(679-681)CCC>CTC	p.P227L	MARCH2_uc002mjw.2_Missense_Mutation_p.P227L|MARCH2_uc002mjx.2_Missense_Mutation_p.P157L	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	227					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CCCGAGGGCCCCCAGCATTCT	0.612													18	28					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	9003603	9003603	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9003603C>T	uc002mkp.2	-	49	40241	c.40037G>A	c.(40036-40038)AGG>AAG	p.R13346K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R163K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13348	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGAACTTCCTGGAGCCAGG	0.557													58	113					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9058524	9058524	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9058524G>A	uc002mkp.2	-	3	29126	c.28922C>T	c.(28921-28923)TCC>TTC	p.S9641F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9643	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACTTCATCGGAGATGTCTAG	0.512													24	31					0	0	0.003954	0	0
MUC16	94025	broad.mit.edu	37	19	9060792	9060792	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9060792G>A	uc002mkp.2	-	3	26858	c.26654C>T	c.(26653-26655)TCT>TTT	p.S8885F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8887	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGAAAAGAGAAGTCACCCG	0.493													39	49					0	0	0.008740	0	0
MUC16	94025	broad.mit.edu	37	19	9066038	9066038	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9066038C>T	uc002mkp.2	-	3	21612	c.21408G>A	c.(21406-21408)ACG>ACA	p.T7136T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7138	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTGTGGTCGTTACCGGGC	0.517													32	78					0	0	0.003271	0	0
MUC16	94025	broad.mit.edu	37	19	9083300	9083300	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9083300C>T	uc002mkp.2	-	1	8719	c.8515G>A	c.(8515-8517)GCT>ACT	p.A2839T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2839	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTGAGTAGCTGTCAGTCTG	0.512													12	11					0	0	0.010729	0	0
MUC16	94025	broad.mit.edu	37	19	9083630	9083630	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9083630G>A	uc002mkp.2	-	1	8389	c.8185C>T	c.(8185-8187)CCC>TCC	p.P2729S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2729	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCTTAGAGGGGGAAGTGGAA	0.468													34	61					0	0	0.005524	0	0
OR7D4	125958	broad.mit.edu	37	19	9325295	9325295	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9325295G>A	uc002mla.1	-	1	219	c.219C>T	c.(217-219)TTC>TTT	p.F73F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGGTGGAGATGAAACAGATGT	0.512													29	48					0	0	0.007291	0	0
ZNF559	84527	broad.mit.edu	37	19	9452399	9452399	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:9452399T>A	uc002mlg.2	+	7	919	c.272T>A	c.(271-273)TTT>TAT	p.F91Y	ZNF559_uc002mlf.2_Translation_Start_Site|ZNF559_uc010dwl.1_Translation_Start_Site|ZNF559_uc010xkn.1_Missense_Mutation_p.F83Y|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.F155Y|ZNF559_uc010dwk.1_Translation_Start_Site|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	91	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAGGAACTGTTTGACTTTAAC	0.353													17	34					0	0	0.007413	0	0
FDX1L	112812	broad.mit.edu	37	19	10426573	10426573	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:10426573C>T	uc002mny.1	-	1	119	c.100G>A	c.(100-102)GGG>AGG	p.G34R	FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	34					electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			ACCCCCTCCCCCGACCCGGAA	0.701													15	19					0	0	0.003163	0	0
ZNF709	163051	broad.mit.edu	37	19	12576517	12576517	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:12576517C>T	uc002mtv.3	-	4	380	c.219G>A	c.(217-219)AGG>AGA	p.R73R	ZNF709_uc002mtw.3_Silent_p.R41R|ZNF709_uc002mtx.3_Silent_p.R73R	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACCTTCTTTCCTTTCACAGA	0.313													9	13					0	0	0.008291	0	0
RFX1	5989	broad.mit.edu	37	19	14094355	14094356	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:14094355_14094356GG>AC	uc002mxv.2	-	3	643_644	c.371_372CC>GT	c.(370-372)ACC>AGT	p.T124S	RFX1_uc010dzi.2_Missense_Mutation_p.T124S	NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	124					immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			TCTGGCTGGCGGTGGAGCCGGG	0.698													8	18					0	0	0.004672	0	0
IL27RA	9466	broad.mit.edu	37	19	14160061	14160061	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:14160061G>A	uc002mxx.2	+	10	1760	c.1337G>A	c.(1336-1338)CGA>CAA	p.R446Q		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	446	Extracellular (Potential).|Fibronectin type-III 3.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CACCAGCTTCGAGGCCACCTC	0.642											OREG0025303	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	30					0	0	0.004990	0	0
SLC1A6	6511	broad.mit.edu	37	19	15075149	15075149	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:15075149C>T	uc002naa.1	-	4	581	c.573G>A	c.(571-573)GTG>GTA	p.V191V	SLC1A6_uc010dzu.1_Silent_p.V191V|SLC1A6_uc010xod.1_Silent_p.V127V|SLC1A6_uc002nab.2_Silent_p.V191V|SLC1A6_uc002nac.2_Silent_p.V191V|SLC1A6_uc002nad.1_Silent_p.V191V	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	191	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	AGCAGGCCTCCACAAGGTTTG	0.483													105	201					0	0	0.003610	0	0
NOTCH3	4854	broad.mit.edu	37	19	15271902	15271902	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:15271902G>A	uc002nan.2	-	33	6613	c.6537C>T	c.(6535-6537)GCC>GCT	p.A2179A		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	2179	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GGCCTGGAGGGGCAGGTGGGG	0.731													2	0					0	0	0.004672	0	0
BRD4	23476	broad.mit.edu	37	19	15349758	15349758	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:15349758G>A	uc002nar.2	-	19	4038	c.3816C>T	c.(3814-3816)GCC>GCT	p.A1272A		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1272					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GGGCCCGCCGGGCCTGCTCCA	0.507			T	NUT|C15orf55	lethal midline carcinoma of young people								3	6					0	0	0.000602	0	0
CYP4F22	126410	broad.mit.edu	37	19	15659975	15659975	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:15659975G>A	uc002nbh.3	+	12	1464	c.1297G>A	c.(1297-1299)GGA>AGA	p.G433R		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	433						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CAGCATCTATGGAACCCACCA	0.632													23	37					0	0	0.006320	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038276	16038277	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:16038276_16038277CC>TT	uc002nbu.2	-	4	396_397	c.360_361GG>AA	c.(358-363)AAGGAT>AAAAAT	p.D121N	CYP4F11_uc010eab.1_Missense_Mutation_p.D121N|CYP4F11_uc002nbt.2_Missense_Mutation_p.D121N	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	121					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AAAATCATATCCTTGGGTGCGA	0.54													75	137					0	0	0.004672	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799020	16799020	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:16799020C>T	uc002nes.2	+	6	829	c.738C>T	c.(736-738)CCC>CCT	p.P246P		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	246	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACATCTGCCCCGTGCTGTTTG	0.637													99	174					0	0	0.003610	0	0
CPAMD8	27151	broad.mit.edu	37	19	17017762	17017762	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:17017762C>T	uc002nfb.2	-	30	4200	c.4168G>A	c.(4168-4170)GAT>AAT	p.D1390N		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1343						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGACACCTACCTCGCATGATG	0.602													4	11					0	0	0.009096	0	0
ARRDC2	27106	broad.mit.edu	37	19	18119242	18119242	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:18119242C>T	uc002nhv.2	+	1	266	c.123C>T	c.(121-123)GCC>GCT	p.A41A	ARRDC2_uc002nhu.2_Intron	NM_015683	NP_056498	Q8TBH0	ARRD2_HUMAN	arrestin domain containing 2 isoform 1	41										pancreas(1)	1						TGTCAAGCGCCGCGCGTGTGG	0.751													4	9					0	0	0.009096	0	0
SFRS14	10147	broad.mit.edu	37	19	19121000	19121000	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:19121000G>A	uc002nkx.2	-	5	2148	c.2002C>T	c.(2002-2004)CGC>TGC	p.R668C	SFRS14_uc002nkz.1_Missense_Mutation_p.R682C|SFRS14_uc002nla.1_Missense_Mutation_p.R668C|SFRS14_uc002nlb.2_Missense_Mutation_p.R668C|SFRS14_uc010xqk.1_Missense_Mutation_p.R437C	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	668					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			TTGAGGTTGCGGACAGCCCGG	0.652													46	76					0	0	0.003610	0	0
NDUFA13	51079	broad.mit.edu	37	19	19638111	19638111	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:19638111C>T	uc010xqy.1	+	3	703	c.444C>T	c.(442-444)TTC>TTT	p.F148F	NDUFA13_uc002nms.2_Silent_p.F148F|NDUFA13_uc010xqx.1_Silent_p.F148F|YJEFN3_uc002nmt.1_5'Flank|YJEFN3_uc010ecf.1_5'Flank|YJEFN3_uc002nmu.1_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	65					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TCGAGGACTTCGAGGCTCGCA	0.602													19	28					0	0	0.002299	0	0
CILP2	148113	broad.mit.edu	37	19	19653722	19653722	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:19653722C>T	uc002nmv.3	+	6	1003	c.918C>T	c.(916-918)GGC>GGT	p.G306G	CILP2_uc002nmw.3_Silent_p.G312G	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	306	Ig-like C2-type.					proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GAGAGGCTGGCCAGAATGTGA	0.597													45	88					0	0	0.003610	0	0
ATP13A1	57130	broad.mit.edu	37	19	19767485	19767485	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:19767485G>C	uc002nnh.3	-	7	1095	c.1067C>G	c.(1066-1068)TCC>TGC	p.S356C	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Missense_Mutation_p.S238C	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	356	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CTGTGGCACGGACTCCCCCGT	0.647													6	16					0	0	0.001984	0	0
LOC284441	284441	broad.mit.edu	37	19	20369384	20369384	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:20369384G>A	uc002nov.2	+	1	928	c.177G>A	c.(175-177)ATG>ATA	p.M59I		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						AACCTCTTATGAACCCAACCA	0.398													31	62					0	0	0.008361	0	0
ZNF208	7757	broad.mit.edu	37	19	22154198	22154198	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:22154198C>T	uc002nqp.2	-	6	3403	c.3254G>A	c.(3253-3255)AGA>AAA	p.R1085K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTTGTGATATCTAAGGGTTGA	0.373													14	36					0	0	0.002450	0	0
ZNF99	7652	broad.mit.edu	37	19	22941195	22941195	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:22941195C>T	uc010xrh.1	-	5	1243	c.1243G>A	c.(1243-1245)GAG>AAG	p.E415K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CAAGGTTTCTCTTCCATATGA	0.348													22	33					0	0	0.002299	0	0
ZNF99	7652	broad.mit.edu	37	19	22941813	22941814	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:22941813_22941814GG>AA	uc010xrh.1	-	5	624_625	c.624_625CC>TT	c.(622-627)CACCTT>CATTTT	p.L209F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTCTAGTAAGGTGTGAGGATT	0.356													14	24					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	19	23329616	23329616	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:23329616G>A	uc002nrb.1	+	4		c.1969G>A								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		CTACAAGTGTGAAGAATGTGA	0.348													7	14					0	0	0.001984	0	0
UQCRFS1	7386	broad.mit.edu	37	19	29699056	29699056	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:29699056G>A	uc002nsd.2	-	2	335	c.224C>T	c.(223-225)TCT>TTT	p.S75F		NM_006003	NP_005994	P47985	UCRI_HUMAN	ubiquinol-cytochrome c reductase, Rieske	75					respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex III	2 iron, 2 sulfur cluster binding|metal ion binding|ubiquinol-cytochrome-c reductase activity				0	Breast(6;0.0545)|Esophageal squamous(110;0.239)		Lung(7;0.092)			ATAACAAACAGAAGCAGGGAC	0.428													28	44					0	0	0.010818	0	0
CCNE1	898	broad.mit.edu	37	19	30313187	30313187	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:30313187T>C	uc002nsn.2	+	10	1064	c.881T>C	c.(880-882)TTT>TCT	p.F294S	CCNE1_uc002nso.2_Missense_Mutation_p.F279S|CCNE1_uc002nsp.2_Missense_Mutation_p.F41S	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	294					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			TGCCTTGAATTTCCTTATGGT	0.453													52	86					0	0	0.003610	0	0
DMKN	93099	broad.mit.edu	37	19	36003654	36003654	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:36003654A>G	uc002nzm.3	-	2	648	c.465T>C	c.(463-465)GGT>GGC	p.G155G	DMKN_uc002nzj.2_5'Flank|DMKN_uc002nzk.3_5'Flank|DMKN_uc002nzl.3_5'Flank|DMKN_uc002nzo.3_Silent_p.G155G|DMKN_uc002nzn.3_Silent_p.G155G|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc010xsv.1_5'Flank|DMKN_uc010xsw.1_5'Flank|DMKN_uc002nzx.3_5'Flank|DMKN_uc002nzy.3_5'Flank|DMKN_uc002nzz.2_5'Flank|DMKN_uc002oac.3_Silent_p.G155G|DMKN_uc010eeb.2_Silent_p.G155G|DMKN_uc002oaa.3_Silent_p.G155G|DMKN_uc002oab.3_Silent_p.G155G	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	155	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CTCCAAGGCCACCTTGAGAGC	0.572													15	28					0	0	0.002450	0	0
NPHS1	4868	broad.mit.edu	37	19	36340480	36340480	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:36340480G>A	uc002oby.2	-	6	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	228	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATGAGGCCTTGATGGGGGCCT	0.587													37	55					0	0	0.010771	0	0
CAPNS1	826	broad.mit.edu	37	19	36636934	36636934	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:36636934C>T	uc002odj.2	+	8	739	c.582C>T	c.(580-582)CTC>CTT	p.L194L	CAPNS1_uc002odi.1_Silent_p.L194L|CAPNS1_uc002odk.2_Silent_p.L194L|CAPNS1_uc002odl.2_Silent_p.L194L	NM_001749	NP_001740	P04632	CPNS1_HUMAN	calpain, small subunit 1	194	EF-hand 3.				positive regulation of cell proliferation	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GTAGTGAACTCCCAGGTGCCT	0.557													76	149					0	0	0.003610	0	0
RYR1	6261	broad.mit.edu	37	19	39051930	39051930	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:39051930C>T	uc002oit.2	+	90	12590	c.12460C>T	c.(12460-12462)CCG>TCG	p.P4154S	RYR1_uc002oiu.2_Missense_Mutation_p.P4149S|RYR1_uc002oiv.1_Missense_Mutation_p.P1063S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4154					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGAGCATGTGCCGCATGACCC	0.617													24	37					0	0	0.003330	0	0
LRFN1	57622	broad.mit.edu	37	19	39804764	39804764	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:39804764C>T	uc002okw.2	-	1	1213	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	405	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GAGCCGGGCTCGGTGAGAGGC	0.706													8	11					0	0	0.003080	0	0
FCGBP	8857	broad.mit.edu	37	19	40368399	40368400	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:40368399_40368400CC>TT	uc002omp.3	-	28	12956_12957	c.12948_12949GG>AA	c.(12946-12951)GGGGAC>GGAAAC	p.D4317N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4317						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ATGTCACGGTCCCCACCACCCA	0.609													13	206					0	0	0.004672	0	0
FCGBP	8857	broad.mit.edu	37	19	40398331	40398331	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:40398331C>T	uc002omp.3	-	14	6644	c.6636G>A	c.(6634-6636)GGG>GGA	p.G2212G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2212	VWFD 5.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGTTGTAGTTCCCGCATAAGC	0.692													21	28					0	0	0.003271	0	0
SPTBN4	57731	broad.mit.edu	37	19	41008109	41008109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:41008109G>A	uc002ony.2	+	9	1058	c.972G>A	c.(970-972)TGG>TGA	p.W324*	SPTBN4_uc002onx.2_Nonsense_Mutation_p.W324*|SPTBN4_uc002onz.2_Nonsense_Mutation_p.W324*	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	324	Spectrin 1.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGCTGGCCTGGATCCACCGCA	0.582													42	50					0	0	0.013114	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594957	41594957	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:41594957G>A	uc002opt.2	+	2	313	c.304G>A	c.(304-306)GGC>AGC	p.G102S		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	102					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CAGCGGGCGAGGCGAGCAGGC	0.642													12	25					0	0	0.004007	0	0
AXL	558	broad.mit.edu	37	19	41748854	41748854	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:41748854C>T	uc010ehj.2	+	11	1569	c.1379C>T	c.(1378-1380)GCC>GTC	p.A460V	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.A460V|AXL_uc010ehk.2_Missense_Mutation_p.A451V	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	460	Helical; (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GCAGTCGTGGCCGCTGCCTGT	0.567													21	45					0	0	0.012319	0	0
POU2F2	5452	broad.mit.edu	37	19	42600283	42600283	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:42600283T>C	uc002osp.2	-	8	681	c.614A>G	c.(613-615)CAA>CGA	p.Q205R	POU2F2_uc002osn.2_Missense_Mutation_p.Q189R|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Missense_Mutation_p.Q189R|POU2F2_uc002osr.1_Missense_Mutation_p.Q205R	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	205	POU-specific.				humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GCGGGCGAATTGCTCCAGCTC	0.677													10	13					0	0	0.008291	0	0
MEGF8	1954	broad.mit.edu	37	19	42880504	42880504	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:42880504A>G	uc002otl.3	+	41	8549	c.7914A>G	c.(7912-7914)CCA>CCG	p.P2638P	MEGF8_uc002otm.3_Silent_p.P2246P|MEGF8_uc002otn.3_Silent_p.P299P	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2705	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TCTGCTTCCCACCTGACCCTA	0.697													12	36					0	0	0.004990	0	0
EML2	24139	broad.mit.edu	37	19	46117952	46117953	+	Missense_Mutation	DNP	GG	AA	AA	rs140164971	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:46117952_46117953GG>AA	uc002pcn.2	-	17	1638_1639	c.1603_1604CC>TT	c.(1603-1605)CCG>TTG	p.P535L	EML2_uc002pco.2_RNA|EML2_uc002pcp.2_Missense_Mutation_p.P419L|EML2_uc010xxl.1_Missense_Mutation_p.P682L|EML2_uc010xxm.1_Missense_Mutation_p.P736L	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	535	WD 9.				sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		ACAGGTAGCCGGGTCCCCTGGG	0.53													36	69					0	0	0.004672	0	0
DMPK	1760	broad.mit.edu	37	19	46282618	46282618	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:46282618C>T	uc002pdd.1	-	3	911	c.367_splice	c.e3-1	p.V123_splice	DMPK_uc010xxs.1_Splice_Site_p.V24_splice|DMPK_uc002pde.1_Splice_Site_p.V123_splice|DMPK_uc002pdf.1_Splice_Site_p.V113_splice|DMPK_uc002pdg.1_Splice_Site_p.V113_splice|DMPK_uc002pdh.1_Splice_Site_p.V113_splice|DMPK_uc002pdi.1_Splice_Site_p.V139_splice|DMPK_uc010xxt.1_Splice_Site_p.V113_splice|DMPK_uc010xxu.1_Intron	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1						regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		AGCACGACACCTGCAGGGCAC	0.662													30	67					0	0	0.007291	0	0
GRWD1	83743	broad.mit.edu	37	19	48956137	48956137	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:48956137G>A	uc002pjd.2	+	7	1429	c.1196G>A	c.(1195-1197)GGA>GAA	p.G399E	KCNJ14_uc002pje.1_5'Flank	NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	399						nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		GCCGACCCCGGACTGGCCGAC	0.697													17	36					0	0	0.004007	0	0
FUT2	2524	broad.mit.edu	37	19	49206783	49206783	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:49206783C>T	uc002pke.3	+	2	681	c.570C>T	c.(568-570)AGC>AGT	p.S190S	FUT2_uc010emc.2_Silent_p.S190S	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	190	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		TGAACGGGAGCCGGCCGGGCA	0.647													17	42					0	0	0.004007	0	0
FGF21	26291	broad.mit.edu	37	19	49261371	49261371	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:49261371C>T	uc002pkn.1	+	4	1096	c.524C>T	c.(523-525)CCG>CTG	p.P175L	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.P175L	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	175					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCCGCACTCCCGGAGCCACCC	0.711													13	16					0	0	0.001855	0	0
GYS1	2997	broad.mit.edu	37	19	49474231	49474231	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:49474231G>A	uc002plp.2	-	13	1840	c.1599C>T	c.(1597-1599)GGC>GGT	p.G533G	GYS1_uc010xzy.1_Silent_p.G166G|GYS1_uc010emm.2_Silent_p.G469G|GYS1_uc010xzz.1_Silent_p.G453G	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	533					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		AGCAGCCGAAGCCGGAGAGAT	0.592											OREG0025611	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	51					0	0	0.003271	0	0
SLC6A16	28968	broad.mit.edu	37	19	49812645	49812645	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:49812645G>A	uc002pmz.2	-	6	1134	c.900C>T	c.(898-900)CTC>CTT	p.L300L	SLC6A16_uc002pna.2_Silent_p.L300L|hsa-mir-4324|MI0015854_5'Flank	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	300	Helical; Name=5; (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		TGAAACAGGGGAGCAGTACCA	0.468													14	20					0	0	0.003163	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49969058	49969058	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:49969058C>T	uc002pnt.2	+	13	1748	c.1632C>T	c.(1630-1632)TCC>TCT	p.S544S	ALDH16A1_uc010yar.1_Silent_p.S493S|ALDH16A1_uc010yas.1_Silent_p.S379S|ALDH16A1_uc010yat.1_Silent_p.S381S	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	544							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CCCGAAGCTCCAGGCCCATCC	0.662													18	32					0	0	0.007413	0	0
IRF3	3661	broad.mit.edu	37	19	50165506	50165506	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:50165506C>T	uc010end.1	-	6	1063	c.681G>A	c.(679-681)CGG>CGA	p.R227R	IRF3_uc002pos.1_5'Flank|IRF3_uc002pot.1_Intron|IRF3_uc002pox.1_Silent_p.R227R|IRF3_uc002poy.1_Silent_p.R227R|IRF3_uc002pou.2_Silent_p.R227R|IRF3_uc002pov.2_Silent_p.R81R|IRF3_uc002pow.2_Silent_p.R227R|IRF3_uc002poz.1_Silent_p.R227R|BCL2L12_uc002ppa.2_5'Flank|BCL2L12_uc002ppb.2_5'Flank	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	227	Involved in HERC5 binding.				interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		ACCCCACCAGCCGCAGGCCCT	0.657													23	27					0	0	0.003954	0	0
MYH14	79784	broad.mit.edu	37	19	50795539	50795539	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:50795539C>T	uc002prr.1	+	35	5073	c.5026C>T	c.(5026-5028)CGG>TGG	p.R1676W	MYH14_uc010enu.1_Missense_Mutation_p.R1717W|MYH14_uc002prq.1_Missense_Mutation_p.R1684W|MYH14_uc010ycb.1_Missense_Mutation_p.R27W|MYH14_uc002prs.1_Missense_Mutation_p.R27W	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1676	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GGAGCTATGGCGGGAGGTGGA	0.622													7	12					0	0	0.001984	0	0
NKG7	4818	broad.mit.edu	37	19	51875431	51875431	+	Silent	SNP	G	A	A	rs144240268		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:51875431G>A	uc002pwj.2	-	2	459	c.288C>T	c.(286-288)ACC>ACT	p.T96T	NKG7_uc002pwk.2_Silent_p.T61T	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	96	Helical; (Potential).					integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CAAAGGCTGCGGTGGTTGAGA	0.622													45	70					0	0	0.013114	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130501	52130501	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:52130501C>T	uc002pxe.2	-	7	1422	c.1283G>A	c.(1282-1284)GGG>GAG	p.G428E		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	428	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GTTCGATCTCCCTGCAGAAAA	0.567													17	29					0	0	0.004990	0	0
ZNF761	388561	broad.mit.edu	37	19	53952800	53952800	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:53952800C>T	uc010eqp.2	+	5	509	c.51C>T	c.(49-51)TTC>TTT	p.F17F	ZNF761_uc002qbr.2_RNA|ZNF761_uc010ydy.1_5'UTR|ZNF761_uc002qbs.2_RNA|ZNF761_uc002qbt.1_5'Flank	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CCATAGAATTCTCTCAGGAGG	0.448													30	58					0	0	0.009718	0	0
LILRA3	11026	broad.mit.edu	37	19	54803737	54803737	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:54803737G>A	uc002qfd.2	-	3	152	c.87C>T	c.(85-87)CCC>CCT	p.P29P	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.P29P	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	29	Ig-like C2-type 1.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCCAGAGGGTGGGCTTGGGGA	0.577													33	58					0	0	0.006999	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045108	55045108	+	RNA	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:55045108C>A	uc010yfa.1	+	3		c.334C>A			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		CTGGCCTTTCCAACAACATCA	0.502													18	22					5.3912e-06	5.77087e-06	0.006122	1	0
LILRA2	11027	broad.mit.edu	37	19	55087289	55087289	+	Missense_Mutation	SNP	G	A	A	rs149720719	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:55087289G>A	uc002qgg.3	+	6	1057	c.968G>A	c.(967-969)AGA>AAA	p.R323K	LILRA2_uc010ern.2_Missense_Mutation_p.R323K|LILRA2_uc002qgf.2_Missense_Mutation_p.R323K|LILRA2_uc010yfe.1_Missense_Mutation_p.R323K|LILRA2_uc010yff.1_Missense_Mutation_p.R311K|LILRA2_uc010ero.2_Missense_Mutation_p.R311K|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	323	Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TTCTATGACAGACCCTCTCTC	0.592													7	10					0	0	0.003080	0	0
LILRP2	79166	broad.mit.edu	37	19	55221850	55221850	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:55221850G>A	uc002qgs.1	+	1		c.2250G>A			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						AGCTCAGAACGAGGTGGGGCA	0.637													10	14					0	0	0.008291	0	0
NLRP11	204801	broad.mit.edu	37	19	56321439	56321439	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:56321439C>T	uc010ygf.1	-	5	1248	c.537G>A	c.(535-537)ATG>ATA	p.M179I	NLRP11_uc002qlz.2_Missense_Mutation_p.M80I|NLRP11_uc002qmb.2_Missense_Mutation_p.M80I|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	179	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CGTACGAGATCATGTTCTGCC	0.493													13	19					0	0	0.001855	0	0
NLRP4	147945	broad.mit.edu	37	19	56379170	56379170	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:56379170A>G	uc002qmd.3	+	6	2704	c.2282A>G	c.(2281-2283)AAC>AGC	p.N761S	NLRP4_uc002qmf.2_Missense_Mutation_p.N686S|NLRP4_uc010etf.2_Intron	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	761	LRR 4.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GTATCCTGCAACCAGTTAGAC	0.512													31	38					0	0	0.009535	0	0
NLRP5	126206	broad.mit.edu	37	19	56520162	56520162	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:56520162C>T	uc002qmj.2	+	3	451	c.451C>T	c.(451-453)CCA>TCA	p.P151S	NLRP5_uc002qmi.2_Missense_Mutation_p.P151S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	151						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGGACATTCACCAGAAGATCC	0.408													10	10					0	0	0.010729	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704332	56704332	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:56704332T>A	uc010ygh.1	-	1	90	c.90A>T	c.(88-90)GAA>GAT	p.E30D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	30					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CAAGTTGAGTTTCTGGGGACG	0.557													9	8					0	0	0.004482	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733114	56733114	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:56733114C>T	uc002qmq.2	-	5	1487	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.E324K|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.E441K|ZSCAN5A_uc002qms.1_Missense_Mutation_p.E440K	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	441	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTTTACATTCGAAGGGCTTC	0.532													21	26					0	0	0.002299	0	0
ZIM2	23619	broad.mit.edu	37	19	57286781	57286781	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:57286781C>T	uc002qnr.2	-	11	1241	c.859G>A	c.(859-861)GAA>AAA	p.E287K	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.E83K|ZIM2_uc010ygr.1_Missense_Mutation_p.E83K|ZIM2_uc002qnq.2_Missense_Mutation_p.E287K|ZIM2_uc010etp.2_Missense_Mutation_p.E287K|ZIM2_uc010ygs.1_Missense_Mutation_p.E287K	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CTCTCAAATTCATCACTGCCA	0.463													25	48					0	0	0.005443	0	0
PEG3	5178	broad.mit.edu	37	19	57326176	57326176	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:57326176G>A	uc002qnu.2	-	7	3985	c.3634C>T	c.(3634-3636)CGT>TGT	p.R1212C	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R1183C|PEG3_uc002qnv.2_Missense_Mutation_p.R1212C|PEG3_uc002qnw.2_Missense_Mutation_p.R1088C|PEG3_uc002qnx.2_Missense_Mutation_p.R1086C|PEG3_uc010etr.2_Missense_Mutation_p.R1212C	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1212					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTGCAGCACGATTCCTCCGT	0.488													17	37					0	0	0.006122	0	0
ZIM3	114026	broad.mit.edu	37	19	57646480	57646480	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:57646480G>A	uc002qnz.1	-	5	1611	c.1225C>T	c.(1225-1227)CAT>TAT	p.H409Y		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	409	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTTTTCTGATGGCTATGAAGG	0.373													56	73					0	0	0.003610	0	0
ZNF17	7565	broad.mit.edu	37	19	57931051	57931051	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:57931051T>C	uc002qoo.1	+	3	422	c.191T>C	c.(190-192)GTT>GCT	p.V64A	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Missense_Mutation_p.V66A	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	64	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		AAGCAATGTGTTTCTGTAGGA	0.488													18	33					0	0	0.008871	0	0
ZNF550	162972	broad.mit.edu	37	19	58058694	58058694	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:58058694A>T	uc002qpe.1	-	2	795	c.795T>A	c.(793-795)AAT>AAA	p.N265K	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	306	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGTGGGTCCTATTATGGCGAA	0.463													30	51					0	0	0.012213	0	0
ZNF530	348327	broad.mit.edu	37	19	58118305	58118305	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:58118305C>T	uc002qpk.2	+	3	1632	c.1412C>T	c.(1411-1413)TCA>TTA	p.S471L	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	471	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGTGAAAAATCATTTAGTTGC	0.418													17	31					0	0	0.008871	0	0
ZNF587	84914	broad.mit.edu	37	19	58370728	58370728	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:58370728T>C	uc002qql.2	+	3	1086	c.948T>C	c.(946-948)CTT>CTC	p.L316L	ZNF587_uc002qqb.2_Silent_p.L273L|ZNF587_uc010yhh.1_Silent_p.L273L|ZNF587_uc002qqi.1_Silent_p.L273L|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Silent_p.L315L	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	316	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		GCCATCAGCTTGTTCACACTG	0.463													4	160					0	0	0.010729	0	0
ZNF417	147687	broad.mit.edu	37	19	58420698	58420698	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:58420698A>G	uc002qqq.2	-	3	1147	c.948T>C	c.(946-948)CGT>CGC	p.R316R	ZNF417_uc010yhm.1_Silent_p.R273R|ZNF417_uc002qqr.2_Silent_p.R315R	NM_152475	NP_689688	Q8TAU3	ZN417_HUMAN	zinc finger protein 417	316	C2H2-type 4.			R -> L (in Ref. 2; AAH25783).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0151)		CAGTGTGAACACGCTGATGGC	0.453													45	99					0	0	0.003610	0	0
C19orf18	147685	broad.mit.edu	37	19	58470085	58470085	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr19:58470085A>C	uc002qqv.2	-	6	637	c.533T>G	c.(532-534)GTT>GGT	p.V178G		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	178	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		TGATATAATAACTAAAATGTA	0.308													12	5					0	0	0.010729	0	0
TPO	7173	broad.mit.edu	37	2	1544387	1544387	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:1544387C>T	uc002qww.2	+	16	2731	c.2640C>T	c.(2638-2640)TCC>TCT	p.S880S	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.S823S|TPO_uc002qwr.2_Silent_p.S880S|TPO_uc002qwx.2_Silent_p.S823S|TPO_uc010yio.1_Silent_p.S707S|TPO_uc010yip.1_Silent_p.S836S|TPO_uc002qwy.1_Silent_p.S176S|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	880	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GCACTAAATCCACACTGCCCA	0.637													24	43					0	0	0.003954	0	0
NBAS	51594	broad.mit.edu	37	2	15614372	15614372	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:15614372G>A	uc002rcc.1	-	15	1444	c.1418C>T	c.(1417-1419)TCT>TTT	p.S473F	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	473										ovary(2)|liver(1)|skin(1)	4						ATCAGAATCAGAATCCTCTTC	0.418													17	29					0	0	0.004007	0	0
CLIP4	79745	broad.mit.edu	37	2	29366576	29366576	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:29366576A>T	uc002rmv.2	+	7	889	c.650A>T	c.(649-651)AAT>ATT	p.N217I	CLIP4_uc002rmu.2_Missense_Mutation_p.N217I|CLIP4_uc010ezm.1_Missense_Mutation_p.N217I|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.N199I	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	217										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TATTTGTAGAATGACAAAGGA	0.388													23	65					0	0	0.003954	0	0
ALK	238	broad.mit.edu	37	2	29451860	29451861	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:29451860_29451861CC>TT	uc002rmy.2	-	16	3611_3612	c.2704_2705GG>AA	c.(2704-2706)GGA>AAA	p.G902K		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	902	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GGAATGTCCTCCGGTGGCACCC	0.619			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				4	18					0	0	0.004672	0	0
XDH	7498	broad.mit.edu	37	2	31591431	31591431	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:31591431T>C	uc002rnv.1	-	19	2155	c.2076A>G	c.(2074-2076)GAA>GAG	p.E692E		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	692					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGGCTGGTAGTTCTTCATAGG	0.313													17	36					0	0	0.007413	0	0
LTBP1	4052	broad.mit.edu	37	2	33477784	33477784	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:33477784C>T	uc002ros.2	+	11	2040	c.2040C>T	c.(2038-2040)TAC>TAT	p.Y680Y	LTBP1_uc002rot.2_Silent_p.Y354Y|LTBP1_uc002rou.2_Silent_p.Y354Y|LTBP1_uc002rov.2_Silent_p.Y354Y|LTBP1_uc010ymz.1_Silent_p.Y354Y|LTBP1_uc010yna.1_Silent_p.Y354Y	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	680	TB 2.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGCCCTGTTACCGACTTGTCA	0.517													45	69					0	0	0.003610	0	0
CRIM1	51232	broad.mit.edu	37	2	36668611	36668611	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:36668611G>A	uc002rpd.2	+	3	755	c.716G>A	c.(715-717)GGA>GAA	p.G239E		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	239	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GGGAAGCCGGGAGAGTGCTGT	0.572													33	59					0	0	0.006230	0	0
STRN	6801	broad.mit.edu	37	2	37152297	37152297	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:37152297C>T	uc002rpn.2	-	2	298	c.289G>A	c.(289-291)GAT>AAT	p.D97N	STRN_uc010ezx.2_Missense_Mutation_p.D97N	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	97	Potential.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				CTCACAAGATCCTTCTTCAAA	0.348													5	115					0	0	0.001984	0	0
DHX57	90957	broad.mit.edu	37	2	39090588	39090588	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:39090588T>C	uc002rrf.2	-	3	397	c.298A>G	c.(298-300)ACT>GCT	p.T100A	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.T100A	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	100							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ATATGTAGAGTCTGAAGGGGT	0.403													25	40					0	0	0.005443	0	0
PRKCE	5581	broad.mit.edu	37	2	46237610	46237610	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:46237610G>A	uc002rut.2	+	10	1588	c.1391G>A	c.(1390-1392)CGG>CAG	p.R464Q		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	464	Protein kinase.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			GCTCTGGCACGGAAACACCCG	0.488													23	42					0	0	0.003954	0	0
MSH2	4436	broad.mit.edu	37	2	47710061	47710061	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:47710061C>T	uc002rvy.1	+	16	2846	c.2778C>T	c.(2776-2778)ATC>ATT	p.I926I	MSH2_uc010yoh.1_Silent_p.I860I|MSH2_uc002rvz.2_Intron|MSH2_uc010fbg.2_Silent_p.I736I	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	926					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TAAATGAAATCATTTCACGAA	0.269			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				9	21					0	0	0.008291	0	0
RPL23AP32	56969	broad.mit.edu	37	2	54756490	54756490	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:54756490C>T	uc010yot.1	+	1	132	c.8C>T	c.(7-9)CCG>CTG	p.P3L	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						AAGATGGCACCGAAAGTGAAG	0.458													21	44					0	0	0.008871	0	0
RTN4	57142	broad.mit.edu	37	2	55254463	55254463	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:55254463C>T	uc002rye.2	-	3	1070	c.772G>A	c.(772-774)GTA>ATA	p.V258I	RTN4_uc002ryd.2_Missense_Mutation_p.V52I|RTN4_uc002ryf.2_Intron|RTN4_uc002ryg.2_Intron	NM_020532	NP_065393	Q9NQC3	RTN4_HUMAN	reticulon 4 isoform A	258	Cytoplasmic (Potential).				apoptosis|axonal fasciculation|cerebral cortex radial glia guided migration|endoplasmic reticulum tubular network organization|negative regulation of anti-apoptosis|negative regulation of axon extension|nerve growth factor receptor signaling pathway|regulation of apoptosis|regulation of branching morphogenesis of a nerve|regulation of cell migration	integral to endoplasmic reticulum membrane|nuclear envelope|plasma membrane	protein binding			ovary(2)|large_intestine(1)	3						GTGGGTAATACTGTTGACAAA	0.413													29	38					0	0	0.008361	0	0
XPO1	7514	broad.mit.edu	37	2	61709610	61709610	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:61709610A>G	uc002sbj.2	-	23	3605	c.2877T>C	c.(2875-2877)AGT>AGC	p.S959S	XPO1_uc010fcl.2_Silent_p.S955S|XPO1_uc010ypn.1_Silent_p.S955S|XPO1_uc002sbk.2_Silent_p.S520S|XPO1_uc002sbg.2_Silent_p.S156S|XPO1_uc002sbh.2_Silent_p.S606S	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	959					intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			TTAATGATGTACTTATTTTTC	0.328													21	20					0	0	0.012319	0	0
FAM161A	84140	broad.mit.edu	37	2	62069262	62069262	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:62069262A>G	uc010ypo.1	-	2	519	c.417T>C	c.(415-417)TCT>TCC	p.S139S	FAM161A_uc002sbm.3_Silent_p.S139S|FAM161A_uc002sbn.3_5'UTR|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Silent_p.S30S	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	139					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						CTTACCTGGAAGAGTCACTAA	0.313													28	57					0	0	0.003271	0	0
PLEK	5341	broad.mit.edu	37	2	68622819	68622819	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:68622819G>C	uc002sen.3	+	9	1086	c.924G>C	c.(922-924)AAG>AAC	p.K308N	PLEK_uc010fde.2_3'UTR	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	308	PH 2.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		CAGGCAGGAAGAGTGAGGAAG	0.512													36	78					0	0	0.006230	0	0
CD207	50489	broad.mit.edu	37	2	71058882	71058882	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:71058882C>T	uc002shg.2	-	5	833	c.786G>A	c.(784-786)GGG>GGA	p.G262G		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	262	C-type lectin.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						AGGACCAGTCCCCTTCCATCC	0.567													34	61					0	0	0.006999	0	0
DYSF	8291	broad.mit.edu	37	2	71838413	71838413	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:71838413G>A	uc002sie.2	+	37	4318	c.3942G>A	c.(3940-3942)AGG>AGA	p.R1314R	DYSF_uc010feg.2_Silent_p.R1345R|DYSF_uc010feh.2_Silent_p.R1300R|DYSF_uc002sig.3_Silent_p.R1300R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.R1314R|DYSF_uc010fef.2_Silent_p.R1331R|DYSF_uc010fei.2_Silent_p.R1331R|DYSF_uc010fek.2_Silent_p.R1332R|DYSF_uc010fej.2_Silent_p.R1301R|DYSF_uc010fel.2_Silent_p.R1301R|DYSF_uc010feo.2_Silent_p.R1346R|DYSF_uc010fem.2_Silent_p.R1315R|DYSF_uc010fen.2_Silent_p.R1332R|DYSF_uc002sif.2_Silent_p.R1315R|DYSF_uc010yqy.1_Silent_p.R195R|DYSF_uc010yqz.1_Silent_p.R54R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1314	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CACCCCAGAGGGAGGCCAACA	0.537													8	13					0	0	0.008291	0	0
SMYD1	150572	broad.mit.edu	37	2	88384003	88384003	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:88384003G>A	uc002ssr.2	+	2	308	c.306G>A	c.(304-306)GAG>GAA	p.E102E	SMYD1_uc002ssq.1_Intron	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TGCCCAATGAGAACATCAGGT	0.507													20	24					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	2	89326909	89326909	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:89326909G>A	uc010ytr.1	-	68		c.6269C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TCTTTCCCCTGGAGACAAAGA	0.502													30	61					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	2	90249242	90249242	+	RNA	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:90249242T>C	uc010fhm.2	+	28		c.3785T>C								Parts of antibodies, mostly variable regions.																		CAAAAGCCCCTAAGCTCTTCA	0.502													76	97					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	91679133	91679133	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:91679133G>A	uc010yua.1	+	1		c.47G>A								Homo sapiens clone CIC 03 anticardiolipin immunoglobulin light chain mRNA, partial cds.																		GCATCTGTAGGAGACAGAGTC	0.438													24	349					0	0	0.003610	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95519289	95519289	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:95519289C>T	uc010fhp.2	-	2		c.218G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATACCTGTATCAAAGGCGTTC	0.368													66	193					0	0	0.003610	0	0
ASTL	431705	broad.mit.edu	37	2	96789943	96789943	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:96789943C>T	uc010yui.1	-	9	942	c.942G>A	c.(940-942)GAG>GAA	p.E314E		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	314					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CCGACAGTGCCTCCAAAAGCC	0.657													12	20					0	0	0.001368	0	0
SNRNP200	23020	broad.mit.edu	37	2	96957528	96957528	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:96957528G>A	uc002svu.2	-	17	2357	c.2271C>T	c.(2269-2271)GCC>GCT	p.A757A	SNRNP200_uc002svw.1_5'Flank	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	757	Helicase C-terminal 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CTTCTGTGGAGGCTGAGCCCT	0.587													11	24					0	0	0.010729	0	0
MAP4K4	9448	broad.mit.edu	37	2	102499089	102499089	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:102499089G>A	uc002tbg.2	+	25	3082	c.3027G>A	c.(3025-3027)GAG>GAA	p.E1009E	MAP4K4_uc002tbc.2_Silent_p.E1090E|MAP4K4_uc002tbd.2_Silent_p.E982E|MAP4K4_uc002tbe.2_Silent_p.E928E|MAP4K4_uc002tbf.2_Silent_p.E1043E|MAP4K4_uc010yvy.1_Silent_p.E1005E|MAP4K4_uc002tbh.2_Silent_p.E927E|MAP4K4_uc002tbi.2_Silent_p.E812E|MAP4K4_uc010yvz.1_Silent_p.E1049E|MAP4K4_uc002tbk.2_Silent_p.E464E|MAP4K4_uc002tbl.2_Silent_p.E195E	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	1009	CNH.|Mediates interaction with RAP2A.				intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CAGAAGTTGAGAAGAAGCAGG	0.338													38	60					0	0	0.008740	0	0
IL1RL1	9173	broad.mit.edu	37	2	102955374	102955374	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:102955374G>A	uc002tbu.1	+	3	410	c.139G>A	c.(139-141)GAT>AAT	p.D47N	IL1RL1_uc010ywa.1_Intron|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Missense_Mutation_p.D47N	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	47	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TTACACCGTGGATTGGTATTA	0.403													57	74					0	0	0.003610	0	0
SLC9A4	389015	broad.mit.edu	37	2	103141589	103141589	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:103141589G>A	uc002tbz.3	+	10	2382	c.1925G>A	c.(1924-1926)GGT>GAT	p.G642D		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	642	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						ATGAGGAAAGGTCACAGCCTG	0.517													40	74					0	0	0.008740	0	0
RGPD4	285190	broad.mit.edu	37	2	108487290	108487290	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:108487290G>A	uc010ywk.1	+	20	2912	c.2830G>A	c.(2830-2832)GAT>AAT	p.D944N	RGPD4_uc002tdu.2_Missense_Mutation_p.D131N|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	944					intracellular transport		binding			skin(2)	2						TCTTGAAAATGATACTGGCTT	0.413													79	138					0	0	0.003610	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													2	11					0	0	0.004672	0	0
DDX18	8886	broad.mit.edu	37	2	118588242	118588242	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:118588242C>T	uc002tlh.1	+	14	2054	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	652							ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						GTTGAGAAATCCAAAATCTTT	0.403													34	57					0	0	0.003755	0	0
MARCO	8685	broad.mit.edu	37	2	119752064	119752064	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:119752064G>A	uc002tln.1	+	17	1663	c.1531G>A	c.(1531-1533)GAG>AAG	p.E511K	MARCO_uc010yyf.1_Missense_Mutation_p.E433K	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	511	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGCAGCCACGAGGAGGACGC	0.597													28	42					0	0	0.012213	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125555887	125555887	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:125555887C>T	uc002tno.2	+	19	3568	c.3204C>T	c.(3202-3204)CTC>CTT	p.L1068L	CNTNAP5_uc010flu.2_Silent_p.L1069L	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1068	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TTGTTCTGCTCTGCAAGAATG	0.498													12	20					0	0	0.010729	0	0
PTPN18	26469	broad.mit.edu	37	2	131127711	131127711	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:131127711G>A	uc002trc.2	+	8	738	c.637G>A	c.(637-639)GAA>AAA	p.E213K	PTPN18_uc002trd.2_Missense_Mutation_p.E192K|PTPN18_uc002trb.2_Missense_Mutation_p.E106K|PTPN18_uc002tre.2_5'Flank	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	213	Tyrosine-protein phosphatase.					cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					CATGGTGGAGGAAGCCCGTCG	0.597													47	96					0	0	0.003610	0	0
FAM123C	205147	broad.mit.edu	37	2	131519712	131519712	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:131519712G>A	uc002trw.2	+	2	257	c.67G>A	c.(67-69)GAC>AAC	p.D23N	FAM123C_uc010fmv.2_Missense_Mutation_p.D23N|FAM123C_uc010fms.1_Missense_Mutation_p.D23N|FAM123C_uc010fmt.1_Missense_Mutation_p.D23N|FAM123C_uc010fmu.1_Missense_Mutation_p.D23N	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	23										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GAAACCCCCAGACCCAGCAGC	0.632													5	11					0	0	0.001168	0	0
POTEE	445582	broad.mit.edu	37	2	131976120	131976120	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:131976120C>T	uc002tsn.2	+	1	197	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	49							ATP binding				0						TTCTGGAGACCACGACGACTC	0.602													89	158					0	0	0.003610	0	0
TUBA3D	113457	broad.mit.edu	37	2	132240254	132240254	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:132240254G>A	uc002tsu.3	+	5	1293	c.1186G>A	c.(1186-1188)GAT>AAT	p.D396N		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	396					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		CCATAAGTTCGATCTCATGTA	0.642													33	130					0	0	0.002836	0	0
CCNT2	905	broad.mit.edu	37	2	135711938	135711938	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:135711938C>T	uc002tuc.1	+	9	1945	c.1913C>T	c.(1912-1914)TCC>TTC	p.S638F	CCNT2_uc002tub.1_Missense_Mutation_p.S638F|CCNT2_uc010zbf.1_Missense_Mutation_p.S463F|CCNT2_uc002tud.1_Missense_Mutation_p.S301F	NM_058241	NP_490595	O60583	CCNT2_HUMAN	cyclin T2 isoform b	638	Poly-Ser.				cell cycle|cell division|interspecies interaction between organisms|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein kinase binding			ovary(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.107)		AGCAAAAGTTCCAAAAGTTCA	0.458													36	66					0	0	0.006230	0	0
R3HDM1	23518	broad.mit.edu	37	2	136437804	136437804	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:136437804T>C	uc002tuo.2	+	20	2634	c.2264T>C	c.(2263-2265)TTC>TCC	p.F755S	R3HDM1_uc010fni.2_Missense_Mutation_p.F754S|R3HDM1_uc002tup.2_Missense_Mutation_p.F700S|R3HDM1_uc010zbh.1_Missense_Mutation_p.F503S	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	755							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		CCTGTTATGTTCCCTAATCAG	0.378													28	56					0	0	0.012213	0	0
LRP1B	53353	broad.mit.edu	37	2	141260595	141260595	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:141260595C>T	uc002tvj.1	-	54	9571	c.8599G>A	c.(8599-8601)GGA>AGA	p.G2867R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2867	Extracellular (Potential).|LDL-receptor class A 19.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCAAAGTCTCCATCACACTGC	0.398										TSP Lung(27;0.18)			15	40					0	0	0.002450	0	0
LRP1B	53353	broad.mit.edu	37	2	141707969	141707969	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:141707969C>T	uc002tvj.1	-	20	3943	c.2971G>A	c.(2971-2973)GAC>AAC	p.D991N	LRP1B_uc010fnl.1_Missense_Mutation_p.D173N	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	991	Extracellular (Potential).|LDL-receptor class A 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCACAGTCGTCATCTGGAAAG	0.433										TSP Lung(27;0.18)			18	30					0	0	0.002780	0	0
CACNB4	785	broad.mit.edu	37	2	152698471	152698471	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:152698471C>T	uc002tya.2	-	13	1316	c.1248G>A	c.(1246-1248)AGG>AGA	p.R416R	CACNB4_uc002txy.2_Silent_p.R382R|CACNB4_uc002txz.2_Silent_p.R398R|CACNB4_uc010fnz.2_Intron	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	416					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	AGCCCAAATTCCTTCCCAGCA	0.502													36	82					0	0	0.010771	0	0
FMNL2	114793	broad.mit.edu	37	2	153475648	153475648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:153475648C>T	uc002tye.2	+	14	1970	c.1603C>T	c.(1603-1605)CCC>TCC	p.P535S	FMNL2_uc010fob.2_5'Flank|FMNL2_uc002tyf.2_5'Flank	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	535	Pro-rich.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						ACCACTGCCTCCCTCATCAGA	0.463													9	15					0	0	0.008291	0	0
GALNT5	11227	broad.mit.edu	37	2	158115237	158115237	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:158115237G>A	uc002tzg.2	+	1	898	c.643G>A	c.(643-645)GAC>AAC	p.D215N	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	215	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						AGCTGAAAGGGACTTGAATGT	0.493													18	32					0	0	0.008871	0	0
TBR1	10716	broad.mit.edu	37	2	162273514	162273514	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:162273514G>A	uc002ubw.1	+	1	895	c.593G>A	c.(592-594)GGG>GAG	p.G198E	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	198						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						ACCCAGCCGGGGCTGGTGCCC	0.612													29	62					0	0	0.006320	0	0
KCNH7	90134	broad.mit.edu	37	2	163253266	163253266	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:163253266C>T	uc002uch.1	-	11	2809	c.2597G>A	c.(2596-2598)AGG>AAG	p.R866K		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	866	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GCTCTCATGCCTTAGGTTGAA	0.338													7	19					0	0	0.001984	0	0
SCN3A	6328	broad.mit.edu	37	2	166011109	166011109	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:166011109G>A	uc002ucx.2	-	11	1725	c.1233C>T	c.(1231-1233)GGC>GGT	p.G411G	SCN3A_uc002ucy.2_Silent_p.G411G|SCN3A_uc002ucz.2_Silent_p.G411G|SCN3A_uc002uda.1_Silent_p.G280G|SCN3A_uc002udb.1_Silent_p.G280G	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	411	Helical; Name=S6 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AATAAAATGAGCCCAAGAAAA	0.428													21	39					0	0	0.012319	0	0
TTC21B	79809	broad.mit.edu	37	2	166786257	166786258	+	Splice_Site	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:166786257_166786258CC>TT	uc002udk.2	-	10	1221	c.1088_splice	c.e10-1	p.G363_splice	TTC21B_uc002udl.2_Splice_Site_p.G363_splice	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B							cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						TTGGATAAATCCTAAAATCAAA	0.386													17	26					0	0	0.004672	0	0
SCN1A	6323	broad.mit.edu	37	2	166900468	166900468	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:166900468C>T	uc010zcz.1	-	11	1772	c.1754G>A	c.(1753-1755)GGA>GAA	p.G585E	SCN1A_uc002udo.3_Missense_Mutation_p.G454E|SCN1A_uc010fpk.2_Missense_Mutation_p.G454E	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	585						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GTTCTCAGATCCCACATCCTT	0.502													22	43					0	0	0.012319	0	0
LRP2	4036	broad.mit.edu	37	2	170048526	170048526	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:170048526C>T	uc002ues.2	-	48	9061	c.8848G>A	c.(8848-8850)GAT>AAT	p.D2950N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2950	LDL-receptor class A 22.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AACTCGGAATCCGAGCAGTTT	0.463													19	33					0	0	0.010504	0	0
C2orf77	129881	broad.mit.edu	37	2	170502525	170502525	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:170502525T>C	uc002ufe.2	-	9	1579	c.1485A>G	c.(1483-1485)AAA>AAG	p.K495K		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	495											0						CCTGTACAGCTTTTACAAGAG	0.443													4	179					0	0	0.001168	0	0
KLHL23	151230	broad.mit.edu	37	2	170592479	170592479	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:170592479G>A	uc002ufh.1	+	4	1293	c.955G>A	c.(955-957)GGA>AGA	p.G319R	KLHL23_uc002ufi.1_Missense_Mutation_p.G319R	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	319	Kelch 1.										0						TACATGTTTAGGACCCAACAT	0.418													43	66					0	0	0.011902	0	0
MAP1D	254042	broad.mit.edu	37	2	172926242	172926242	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:172926242C>T	uc002uhk.2	+	2	130	c.57C>T	c.(55-57)TTC>TTT	p.F19F	MAP1D_uc010zdw.1_5'UTR	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	19					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			ATAGAATTTTCTCTTCACCAC	0.343													52	74					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179424178	179424178	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179424178G>A	uc010zfg.1	-	275	79201	c.78977C>T	c.(78976-78978)TCT>TTT	p.S26326F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S20021F|TTN_uc010zfi.1_Missense_Mutation_p.S19954F|TTN_uc010zfj.1_Missense_Mutation_p.S19829F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27253							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTGGTCACAGAGACCCATGC	0.438													34	78					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179424620	179424620	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179424620C>T	uc010zfg.1	-	275	78759	c.78535G>A	c.(78535-78537)GAA>AAA	p.E26179K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E19874K|TTN_uc010zfi.1_Missense_Mutation_p.E19807K|TTN_uc010zfj.1_Missense_Mutation_p.E19682K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27106							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCTCTTTCCTTTGCTATC	0.433													26	59					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179437206	179437206	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179437206G>A	uc010zfg.1	-	275	66173	c.65949C>T	c.(65947-65949)ATC>ATT	p.I21983I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I15678I|TTN_uc010zfi.1_Silent_p.I15611I|TTN_uc010zfj.1_Silent_p.I15486I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22910							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATAGTTCTTGATTTTTGAAC	0.448													14	29					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179455117	179455117	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179455117G>A	uc010zfg.1	-	253	53855	c.53631C>T	c.(53629-53631)TTC>TTT	p.F17877F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F11572F|TTN_uc010zfi.1_Silent_p.F11505F|TTN_uc010zfj.1_Silent_p.F11380F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18804							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTTTATACGGAATCTGTACT	0.413													27	55					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179456111	179456111	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179456111G>A	uc010zfg.1	-	253	52861	c.52637C>T	c.(52636-52638)ACC>ATC	p.T17546I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T11241I|TTN_uc010zfi.1_Missense_Mutation_p.T11174I|TTN_uc010zfj.1_Missense_Mutation_p.T11049I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18473							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCCCATCGGTTGTCCACTT	0.433													127	233					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179462333	179462333	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179462333C>T	uc010zfg.1	-	243	49996	c.49772G>A	c.(49771-49773)GGC>GAC	p.G16591D	uc002umo.2_RNA|uc002ump.1_RNA|TTN_uc010zfh.1_Missense_Mutation_p.G10286D|TTN_uc010zfi.1_Missense_Mutation_p.G10219D|TTN_uc010zfj.1_Missense_Mutation_p.G10094D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17518							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAATAGACGCCTTGATGGCT	0.403													16	24					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179497937	179497937	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179497937C>T	uc010zfg.1	-	182	35583	c.35359G>A	c.(35359-35361)GGA>AGA	p.G11787R	TTN_uc010zfh.1_Missense_Mutation_p.G5482R|TTN_uc010zfi.1_Missense_Mutation_p.G5415R|TTN_uc010zfj.1_Missense_Mutation_p.G5290R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12714							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAGGCTGTCCTTTCAGCTTC	0.438													16	28					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179558399	179558399	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179558399C>T	uc010zfg.1	-	116	28023	c.27799G>A	c.(27799-27801)GAA>AAA	p.E9267K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5928K|TTN_uc010fre.1_Missense_Mutation_p.E378K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10194							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAACAATTTCCTTTTGTACC	0.299													9	17					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179613571	179613571	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179613571G>T	uc002unb.2	-	46	13780	c.13556C>A	c.(13555-13557)CCA>CAA	p.P4519Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAGTATTTGGAGACATTTT	0.338													28	42					8.58068e-18	9.30917e-18	0.007291	1	0
TTN	7273	broad.mit.edu	37	2	179616458	179616458	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179616458C>T	uc002unb.2	-	46	10893	c.10669G>A	c.(10669-10671)GAT>AAT	p.D3557N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3556							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGTAAATCACTCTCAGCT	0.408													36	42					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179621235	179621235	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:179621235C>T	uc010zfh.1	-	44	10679	c.10455G>A	c.(10453-10455)ACG>ACA	p.T3485T	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCGCCTCACCCGTGGACTCTT	0.453													21	44					0	0	0.002299	0	0
ITGA4	3676	broad.mit.edu	37	2	182347248	182347248	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:182347248C>T	uc002unu.2	+	9	1674	c.911C>T	c.(910-912)TCG>TTG	p.S304L	ITGA4_uc010zfl.1_Missense_Mutation_p.S304L	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	304	FG-GAP 5.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	CAGCTTGGATCGTACTTTGGA	0.483													67	156					0	0	0.003610	0	0
CERKL	375298	broad.mit.edu	37	2	182412563	182412563	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:182412563C>T	uc002unx.2	-	10	1324	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E	CERKL_uc002uny.2_Missense_Mutation_p.G382E|CERKL_uc010zfm.1_Missense_Mutation_p.G364E|CERKL_uc002unz.2_Missense_Mutation_p.G130E|CERKL_uc002uoa.2_Missense_Mutation_p.G313E|CERKL_uc002uob.2_Missense_Mutation_p.G130E|CERKL_uc002uoc.2_Missense_Mutation_p.G269E|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.G177E|CERKL_uc002unw.2_5'UTR	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	408					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TTTGGGAGATCCCTGTGCCCT	0.393													54	78					0	0	0.003610	0	0
SSFA2	6744	broad.mit.edu	37	2	182767010	182767010	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:182767010T>C	uc002uoi.2	+	8	1552	c.1230T>C	c.(1228-1230)TCT>TCC	p.S410S	SSFA2_uc002uoh.2_Silent_p.S410S|SSFA2_uc002uoj.2_Silent_p.S410S|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Silent_p.S257S|SSFA2_uc002uol.2_Silent_p.S257S	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	410						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GTGAGGAATCTGGTATTGTAG	0.358													16	28					0	0	0.006122	0	0
PDE1A	5136	broad.mit.edu	37	2	183104895	183104895	+	Missense_Mutation	SNP	C	T	T	rs145482728		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:183104895C>T	uc002uos.2	-	4	424	c.340G>A	c.(340-342)GAA>AAA	p.E114K	PDE1A_uc010zfp.1_Missense_Mutation_p.E10K|PDE1A_uc002uoq.1_Missense_Mutation_p.E114K|PDE1A_uc010zfq.1_Missense_Mutation_p.E114K|PDE1A_uc002uor.2_Missense_Mutation_p.E98K|PDE1A_uc002uou.2_Missense_Mutation_p.E80K	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	114					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.E114K(1)		skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTTGGTTTTTCCTCAGGTTTC	0.418													37	60					0	0	0.004878	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803067	185803067	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:185803067G>A	uc002uph.2	+	4	3538	c.2944G>A	c.(2944-2946)GGA>AGA	p.G982R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	982						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CCTTCCACAAGGAAAGATGAA	0.423													26	45					0	0	0.004656	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187698678	187698678	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:187698678G>A	uc002upu.1	-	6	863	c.823C>T	c.(823-825)CGT>TGT	p.R275C		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	275	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TGTACCTCACGAAATGTAAAC	0.363													16	26					0	0	0.004990	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545000	196545000	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:196545000C>T	uc002utg.3	+	2	448	c.234C>T	c.(232-234)TCC>TCT	p.S78S	SLC39A10_uc002uth.3_Silent_p.S78S|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	78					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			GAAGATTATCCTTTTTTGGTT	0.338													25	40					0	0	0.006320	0	0
DNAH7	56171	broad.mit.edu	37	2	196722234	196722234	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:196722234G>A	uc002utj.3	-	44	8382	c.8281C>T	c.(8281-8283)CCT>TCT	p.P2761S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2761	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAAGCTGGAGGAATATTGTCC	0.383													16	35					0	0	0.003163	0	0
FAM126B	285172	broad.mit.edu	37	2	201853036	201853036	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:201853036G>A	uc002uws.3	-	11	1128	c.940C>T	c.(940-942)CGG>TGG	p.R314W	FAM126B_uc002uwu.2_Missense_Mutation_p.R232W|FAM126B_uc002uwv.2_Missense_Mutation_p.R314W	NM_173822	NP_776183	Q8IXS8	F126B_HUMAN	hypothetical protein LOC285172	314						intracellular				ovary(1)	1						ATTGCAGTCCGAGAAATCCTC	0.423													40	55					0	0	0.010771	0	0
ALS2CR4	65062	broad.mit.edu	37	2	202494496	202494496	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:202494496G>A	uc002uyh.1	-	9	734	c.633C>T	c.(631-633)TCC>TCT	p.S211S	ALS2CR4_uc002uyg.1_Silent_p.S203S|ALS2CR4_uc010zho.1_Silent_p.S6S|ALS2CR4_uc010zhp.1_RNA	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	235						integral to membrane	protein binding				0						TGGTGGTCCAGGAAGGCTTCA	0.423													28	61					0	0	0.008361	0	0
ALS2	57679	broad.mit.edu	37	2	202609105	202609105	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:202609105G>A	uc002uyo.2	-	10	2402	c.2046C>T	c.(2044-2046)GCC>GCT	p.A682A	ALS2_uc002uyp.3_Silent_p.A682A|ALS2_uc002uyq.2_Silent_p.A682A|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	682					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						TATCCACCAAGGCTAAATAGC	0.328													11	27					0	0	0.010729	0	0
PARD3B	117583	broad.mit.edu	37	2	206480476	206480477	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:206480476_206480477AC>TT	uc002var.1	+	23	3764_3765	c.3557_3558AC>TT	c.(3556-3558)GAC>GTT	p.D1186V	PARD3B_uc002vao.1_Missense_Mutation_p.D1085V|PARD3B_uc002vap.1_Missense_Mutation_p.D1124V|PARD3B_uc002vaq.1_Missense_Mutation_p.D1117V|uc010fuc.1_5'Flank	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1186					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GGCAGCCCAGACCAGTACCCTT	0.619													33	52					0	0	0.004672	0	0
MAP2	4133	broad.mit.edu	37	2	210517993	210517993	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:210517993T>G	uc002vde.1	+	4	347	c.99T>G	c.(97-99)GAT>GAG	p.D33E	MAP2_uc002vdc.1_Missense_Mutation_p.D33E|MAP2_uc002vdd.1_Missense_Mutation_p.D33E|MAP2_uc002vdf.1_Missense_Mutation_p.D33E|MAP2_uc002vdg.1_Missense_Mutation_p.D33E|MAP2_uc002vdh.1_Missense_Mutation_p.D33E|MAP2_uc002vdi.1_Missense_Mutation_p.D33E	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	33					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AGATTAAGGATCAAGGCGGAG	0.547													17	28					0	0	0.004990	0	0
MAP2	4133	broad.mit.edu	37	2	210559961	210559961	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:210559961C>T	uc002vde.1	+	7	3315	c.3067C>T	c.(3067-3069)CCA>TCA	p.P1023S	MAP2_uc002vdc.1_Missense_Mutation_p.P1023S|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.P1019S	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1023					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TAGTTCAGTGCCAGAGATAGC	0.428													17	24					0	0	0.006122	0	0
ATIC	471	broad.mit.edu	37	2	216197195	216197195	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:216197195C>T	uc002vex.3	+	8	953	c.779C>T	c.(778-780)CCA>CTA	p.P260L	ATIC_uc010zjo.1_Missense_Mutation_p.P201L|ATIC_uc002vey.3_Missense_Mutation_p.P259L	NM_004044	NP_004035	P31939	PUR9_HUMAN	5-aminoimidazole-4-carboxamide ribonucleotide	260					IMP biosynthetic process|purine base metabolic process	cytosol	IMP cyclohydrolase activity|phosphoribosylaminoimidazolecarboxamide formyltransferase activity|protein homodimerization activity		ATIC/ALK(24)	haematopoietic_and_lymphoid_tissue(22)|ovary(2)|lung(2)|soft_tissue(2)|skin(1)	29		Renal(323;0.229)		Epithelial(149;2.02e-06)|all cancers(144;0.000316)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.0097)	Tetrahydrofolic acid(DB00116)	TTAGGTATTCCAGCCGCTGCC	0.443			T	ALK	ALCL								18	29					0	0	0.008871	0	0
VIL1	7429	broad.mit.edu	37	2	219294156	219294156	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:219294156C>T	uc002via.2	+	7	781	c.716C>T	c.(715-717)GCC>GTC	p.A239V	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.A239V|VIL1_uc002vic.1_Missense_Mutation_p.A239V	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	239	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGAAGGCGGCCGTGCCCGAC	0.632													24	34					0	0	0.003954	0	0
TTLL4	9654	broad.mit.edu	37	2	219617635	219617635	+	Silent	SNP	A	T	T	rs139732351		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:219617635A>T	uc002viy.2	+	17	3496	c.3126A>T	c.(3124-3126)CCA>CCT	p.P1042P	TTLL4_uc010zkl.1_Silent_p.P877P|TTLL4_uc010fvx.2_Silent_p.P978P|TTLL4_uc010zkm.1_Silent_p.P245P	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1042					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TTGAGCAGCCACGATATTTCA	0.453													12	98					0	0	0.003163	0	0
GLB1L	79411	broad.mit.edu	37	2	220103065	220103065	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:220103065G>A	uc002vkm.2	-	14	1487	c.1248C>T	c.(1246-1248)TAC>TAT	p.Y416Y	GLB1L_uc002vkk.2_Silent_p.Y173Y|GLB1L_uc010zkx.1_Silent_p.Y326Y|GLB1L_uc002vkn.2_Silent_p.Y416Y	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	416					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TATAGGTTCGGTACAACATGA	0.448													34	76					0	0	0.003271	0	0
SPEG	10290	broad.mit.edu	37	2	220355185	220355185	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:220355185C>T	uc010fwg.2	+	37	8976	c.8976C>T	c.(8974-8976)TTC>TTT	p.F2992F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2992	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGCGAACGTTCGTGGCCAAGA	0.677													28	29					0	0	0.012213	0	0
STK11IP	114790	broad.mit.edu	37	2	220467489	220467489	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:220467489A>G	uc002vml.2	+	7	685	c.642A>G	c.(640-642)GGA>GGG	p.G214G	STK11IP_uc010zlk.1_Silent_p.G203G|STK11IP_uc010zll.1_Silent_p.G203G|STK11IP_uc002vmm.1_Silent_p.G203G	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	214	LRR 4.				protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTGTCAGGGATTCCTGATGG	0.527													9	21					0	0	0.006214	0	0
DGKD	8527	broad.mit.edu	37	2	234357995	234357995	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:234357995C>T	uc002vui.1	+	15	1873	c.1861C>T	c.(1861-1863)CGT>TGT	p.R621C	DGKD_uc002vuj.1_Missense_Mutation_p.R577C|DGKD_uc010fyh.1_Missense_Mutation_p.R488C|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	621					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	GAAAGCAATTCGTCAGATCAT	0.582											OREG0015296	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	12					0	0	0.001855	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591146	234591146	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:234591146C>T	uc002vut.2	+	1	563	c.563C>T	c.(562-564)TCC>TTC	p.S188F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.S188F	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	188					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GCTCCTCTTTCCTATGTCCCC	0.473													64	118					0	0	0.003610	0	0
NDUFA10	4705	broad.mit.edu	37	2	240929547	240929547	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:240929547G>A	uc002vyn.2	-	9	1023	c.943C>T	c.(943-945)CCG>TCG	p.P315S	NDUFA10_uc010fzc.1_Missense_Mutation_p.P345S	NM_004544	NP_004535	O95299	NDUAA_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	315					mitochondrial electron transport, NADH to ubiquinone|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transport	mitochondrial matrix|mitochondrial respiratory chain complex I	ATP binding|NADH dehydrogenase (ubiquinone) activity|phosphotransferase activity, alcohol group as acceptor			central_nervous_system(1)	1		all_epithelial(40;4.26e-15)|Breast(86;4.4e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(121;7.82e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.5e-13)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.39e-05)|Lung(119;0.00519)|LUSC - Lung squamous cell carcinoma(224;0.0202)	NADH(DB00157)	GTGACTTCCGGGAGAAAGATA	0.428													23	52					0	0	0.003330	0	0
OTOS	150677	broad.mit.edu	37	2	241078633	241078633	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:241078633G>A	uc002vyv.2	-	4	379	c.224C>T	c.(223-225)CCC>CTC	p.P75L	MYEOV2_uc002vyu.1_5'Flank|MYEOV2_uc010zof.1_5'Flank	NM_148961	NP_683764	Q8NHW6	OTOSP_HUMAN	otospiralin precursor	75						extracellular region					0		all_epithelial(40;2.79e-15)|Breast(86;3.04e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|Hepatocellular(293;0.148)|all_hematologic(139;0.158)|Melanoma(123;0.16)		Epithelial(32;2.56e-30)|all cancers(36;7.18e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.37e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.07e-06)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		GCTCCCCAGGGGGAAGTGGGC	0.642													23	37					0	0	0.002780	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241512621	241512621	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:241512621C>A	uc002vzi.2	+	3	664	c.71C>A	c.(70-72)CCC>CAC	p.P24H	RNPEPL1_uc010fzf.2_5'UTR|RNPEPL1_uc002vzj.2_5'Flank	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	24					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		CACCCCGTGCCCGCCTACCTC	0.672													3	9					0.004672	0.00497887	0.004672	1	0
C2orf54	79919	broad.mit.edu	37	2	241835039	241835039	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr2:241835039C>T	uc002wae.3	-	1	535	c.376G>A	c.(376-378)GAG>AAG	p.E126K		NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	126											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		AAGGTATCCTCGGTGGTCCAC	0.622													10	16					0	0	0.008291	0	0
SOX12	6666	broad.mit.edu	37	20	306916	306916	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:306916G>A	uc002wdh.2	+	1	678	c.348G>A	c.(346-348)AAG>AAA	p.K116K		NM_006943	NP_008874	O15370	SOX12_HUMAN	SRY (sex determining region Y)-box 12	116					cell fate commitment|spinal cord development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|transcription regulatory region sequence-specific DNA binding				0		all_cancers(10;0.000331)|Lung NSC(37;0.0496)|all_lung(30;0.0831)|all_epithelial(17;0.0868)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			AAAAGAGCAAgggggcgcccg	0.572													5	4					0	0	0.000602	0	0
C20orf54	113278	broad.mit.edu	37	20	741707	741707	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:741707G>A	uc002wed.3	-	5	1712	c.1373C>T	c.(1372-1374)TCG>TTG	p.S458L	C20orf54_uc002wee.2_3'UTR	NM_033409	NP_212134	Q9NQ40	RFT2_HUMAN	hypothetical protein LOC113278 precursor	458					sensory perception of sound	integral to plasma membrane	riboflavin transporter activity			ovary(2)	2						GTCCGCGGACGAGAAGAGCCG	0.687													4	6					0	0	0.000602	0	0
ANGPT4	51378	broad.mit.edu	37	20	896658	896658	+	Missense_Mutation	SNP	G	A	A	rs140900541		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:896658G>A	uc002wei.2	-	1	303	c.200C>T	c.(199-201)ACC>ATC	p.T67I	ANGPT4_uc010zpn.1_Missense_Mutation_p.T61I	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	67					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TCTCTGGAGGGTGTTGGAGTC	0.607													30	66					0	0	0.012213	0	0
ADAM33	80332	broad.mit.edu	37	20	3655201	3655201	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:3655201G>A	uc002wit.2	-	6	637	c.550C>T	c.(550-552)CCT>TCT	p.P184S	ADAM33_uc002wir.1_Missense_Mutation_p.P184S|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.P184S|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.P196S|ADAM33_uc010zqh.1_Missense_Mutation_p.P184S	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	184	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						TTGTTCCCAGGATCCCTGTGG	0.612													32	57					0	0	0.004289	0	0
HSPA12B	116835	broad.mit.edu	37	20	3721513	3721513	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:3721513C>T	uc002wjd.2	+	3	198	c.95C>T	c.(94-96)ACC>ATC	p.T32I	HSPA12B_uc010zqi.1_Missense_Mutation_p.T32I|HSPA12B_uc002wje.2_Intron|HSPA12B_uc010zqj.1_Intron	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	32							ATP binding				0						TCCCCGAGGACCCAGGAAAGC	0.657													9	27					0	0	0.008291	0	0
PROKR2	128674	broad.mit.edu	37	20	5283061	5283061	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:5283061C>T	uc010zqw.1	-	2	780	c.780G>A	c.(778-780)ACG>ACA	p.T260T	PROKR2_uc010zqx.1_Silent_p.T260T|PROKR2_uc010zqy.1_Silent_p.T260T	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	260	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAATCTGCTCCGTCTGGAACC	0.607										HNSCC(71;0.22)			22	34					0	0	0.002299	0	0
BMP2	650	broad.mit.edu	37	20	6759539	6759539	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:6759539C>T	uc002wmu.1	+	3	1779	c.994C>T	c.(994-996)CCT>TCT	p.P332S		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	332					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	ATGCCCTTTTCCTCTGGCTGA	0.507													23	41					0	0	0.003330	0	0
PCSK2	5126	broad.mit.edu	37	20	17434573	17434574	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:17434573_17434574GG>AA	uc002wpm.2	+	9	1392_1393	c.1072_1073GG>AA	c.(1072-1074)GGG>AAG	p.G358K	PCSK2_uc002wpl.2_Missense_Mutation_p.G339K|PCSK2_uc010zrm.1_Missense_Mutation_p.G323K	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	358	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTCAGCAACGGGAGGAAAAGG	0.594													16	25					0	0	0.004672	0	0
PCSK2	5126	broad.mit.edu	37	20	17462516	17462516	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:17462516G>A	uc002wpm.2	+	12	2038	c.1718G>A	c.(1717-1719)GGA>GAA	p.G573E	PCSK2_uc002wpl.2_Missense_Mutation_p.G554E|PCSK2_uc010zrm.1_Missense_Mutation_p.G538E|PCSK2_uc002wpn.2_Missense_Mutation_p.G227E	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	573					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGGAGCTGGGATTTGTCGGC	0.627													11	21					0	0	0.008291	0	0
CST9	128822	broad.mit.edu	37	20	23584341	23584341	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:23584341G>A	uc002wtl.2	-	2	395	c.286C>T	c.(286-288)CTG>TTG	p.L96L		NM_001008693	NP_001008693	Q5W186	CST9_HUMAN	cystatin 9 precursor	96						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Colorectal(13;0.0993)					CGCAGTTGCAGATTCATGGAG	0.463													49	89					0	0	0.003610	0	0
CST4	1472	broad.mit.edu	37	20	23669472	23669472	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:23669472C>T	uc002wto.1	-	1	191	c.135G>A	c.(133-135)CAG>CAA	p.Q45Q		NM_001899	NP_001890	P01036	CYTS_HUMAN	cystatin S precursor	45						extracellular region	cysteine-type endopeptidase inhibitor activity			breast(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					GAAGGGCACGCTGTACCCACT	0.587													23	50					0	0	0.002780	0	0
C20orf186	149954	broad.mit.edu	37	20	31678582	31678582	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:31678582G>A	uc010zue.1	+	8	1135	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	374						cytoplasm|extracellular region	lipid binding				0						TGTGACCGGGGAATTCCTGGA	0.607													15	26					0	0	0.004007	0	0
ZNF341	84905	broad.mit.edu	37	20	32345035	32345035	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:32345035G>A	uc002wzy.2	+	6	843	c.823G>A	c.(823-825)GGA>AGA	p.G275R	ZNF341_uc002wzx.2_Missense_Mutation_p.G275R|ZNF341_uc010geq.2_Missense_Mutation_p.G185R|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	275					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAAACCCAAAGGACCAAACCC	0.607													66	114					0	0	0.003610	0	0
PIGU	128869	broad.mit.edu	37	20	33169475	33169475	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:33169475C>T	uc002xas.2	-	10	1128	c.928G>A	c.(928-930)GAG>AAG	p.E310K	PIGU_uc010zul.1_Missense_Mutation_p.E310K|PIGU_uc002xat.2_Missense_Mutation_p.E290K	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	310					attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						ATGGGGTGCTCCCTGGGGCAG	0.542													6	18					0	0	0.001984	0	0
GDF5	8200	broad.mit.edu	37	20	34022071	34022071	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:34022071C>T	uc002xck.1	-	2	1461	c.1142G>A	c.(1141-1143)CGG>CAG	p.R381Q	GDF5_uc010gfc.1_Missense_Mutation_p.R381Q|uc002xcj.2_Missense_Mutation_p.P161L|GDF5_uc010zvc.1_Missense_Mutation_p.R381Q	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	381					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CAGTGGGGCCCGCCGTTTTCG	0.577													41	95					0	0	0.003610	0	0
CEP250	11190	broad.mit.edu	37	20	34087914	34087914	+	Missense_Mutation	SNP	C	T	T	rs150723097		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:34087914C>T	uc002xcm.2	+	29	4485	c.3814C>T	c.(3814-3816)CGT>TGT	p.R1272C	CEP250_uc010zve.1_Missense_Mutation_p.R640C	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1272	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			ACTGGAAGAGCGTCTAACTGA	0.512													35	78					0	0	0.004878	0	0
RBM12	10137	broad.mit.edu	37	20	34241544	34241544	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:34241544G>A	uc002xdq.2	-	3	1933	c.1701C>T	c.(1699-1701)ATC>ATT	p.I567I	CPNE1_uc010zvj.1_5'UTR|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Silent_p.I567I|RBM12_uc002xds.2_Silent_p.I567I	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	567						nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CATCCACTGGGATTCCTTCTA	0.413													53	103					0	0	0.003610	0	0
HNF4A	3172	broad.mit.edu	37	20	43057089	43057089	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:43057089G>A	uc002xma.2	+	9	1333	c.1244G>A	c.(1243-1245)GGA>GAA	p.G415E	HNF4A_uc002xlu.2_Missense_Mutation_p.G393E|HNF4A_uc002xlv.2_Missense_Mutation_p.G393E|HNF4A_uc002xlz.2_Missense_Mutation_p.G415E|HNF4A_uc010ggq.2_Missense_Mutation_p.G408E	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	415					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CTCAGCAACGGACAGATGTGT	0.587													101	162					0	0	0.003610	0	0
HNF4A	3172	broad.mit.edu	37	20	43058177	43058177	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:43058177C>T	uc002xma.2	+	10	1386	c.1297C>T	c.(1297-1299)CCA>TCA	p.P433S	HNF4A_uc002xlu.2_Missense_Mutation_p.P401S|HNF4A_uc002xlv.2_Missense_Mutation_p.P411S|HNF4A_uc002xlz.2_Missense_Mutation_p.P423S|HNF4A_uc010ggq.2_Missense_Mutation_p.P426S	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	433					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCCTGAGACCCCACAGCCCTC	0.612													127	250					0	0	0.003610	0	0
SYS1-DBNDD2	767557	broad.mit.edu	37	20	44037156	44037156	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:44037156C>T	uc002xnx.2	+	4	545	c.49C>T	c.(49-51)CGG>TGG	p.R17W	DBNDD2_uc002xnz.2_Missense_Mutation_p.R17W|DBNDD2_uc002xoa.2_Missense_Mutation_p.R17W|DBNDD2_uc002xob.2_Missense_Mutation_p.R17W|DBNDD2_uc002xoc.2_Missense_Mutation_p.R17W|DBNDD2_uc002xod.2_Missense_Mutation_p.R17W|DBNDD2_uc002xoe.2_Missense_Mutation_p.R17W|DBNDD2_uc002xof.2_Missense_Mutation_p.R17W|DBNDD2_uc002xog.2_Missense_Mutation_p.R17W	NM_001048225	NP_001041690			SCF apoptosis response protein 1 isoform a												0						GCTCCGCCTTCGGGAGCGGCA	0.552													34	45					0	0	0.002836	0	0
ELMO2	63916	broad.mit.edu	37	20	45003020	45003020	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:45003020G>A	uc002xrt.1	-	15	1440	c.1230C>T	c.(1228-1230)GCC>GCT	p.A410A	ELMO2_uc010zxq.1_Silent_p.A142A|ELMO2_uc002xrs.1_Silent_p.A157A|ELMO2_uc002xru.1_Silent_p.A410A|ELMO2_uc010zxr.1_Silent_p.A422A|ELMO2_uc010zxs.1_Silent_p.A227A|ELMO2_uc002xrv.1_Silent_p.A129A|ELMO2_uc002xrw.2_Silent_p.A227A	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	410	ELMO.				apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGAGCTCAATGGCACTGCGGC	0.507													25	59					0	0	0.006320	0	0
NCOA3	8202	broad.mit.edu	37	20	46280002	46280002	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:46280002C>T	uc002xtk.2	+	20	4133	c.3928C>T	c.(3928-3930)CCA>TCA	p.P1310S	NCOA3_uc010ght.1_Missense_Mutation_p.P1301S|NCOA3_uc002xtl.2_Missense_Mutation_p.P1306S|NCOA3_uc002xtm.2_Missense_Mutation_p.P1305S|NCOA3_uc002xtn.2_Missense_Mutation_p.P1309S|NCOA3_uc010zyc.1_Missense_Mutation_p.P1105S	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1310					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GCAACAGTTTCCATATCAACC	0.448													13	31					0	0	0.003163	0	0
PTGIS	5740	broad.mit.edu	37	20	48140776	48140776	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:48140776C>T	uc002xut.2	-	6	728	c.674G>A	c.(673-675)GGG>GAG	p.G225E	PTGIS_uc010zyi.1_Missense_Mutation_p.G86E	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	225					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GTCCTTGTCCCCTGCAGGGAC	0.602													24	37					0	0	0.003954	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871822	51871822	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:51871822G>A	uc002xwo.2	+	2	2781	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	609					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGACAAAGATGAAGCGGTGAA	0.507													28	81					0	0	0.004656	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227489	56227489	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:56227489G>A	uc002xyq.2	-	4	877	c.484C>T	c.(484-486)CAG>TAG	p.Q162*	PMEPA1_uc002xyr.2_Nonsense_Mutation_p.Q112*|PMEPA1_uc002xys.2_Nonsense_Mutation_p.Q127*|PMEPA1_uc002xyt.2_Nonsense_Mutation_p.Q112*	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	162	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						CAGGGGCCCTGGTAGGGTGGG	0.657													10	18					0	0	0.006214	0	0
CDH4	1002	broad.mit.edu	37	20	60485547	60485547	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:60485547C>G	uc002ybn.1	+	9	1272	c.1258C>G	c.(1258-1260)CAG>GAG	p.Q420E	CDH4_uc002ybp.1_Missense_Mutation_p.Q346E	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	420	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGACCGAGATCAGCCCCACTC	0.567													14	36					0	0	0.003163	0	0
LAMA5	3911	broad.mit.edu	37	20	60902993	60902993	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:60902993G>A	uc002ycq.2	-	36	4793	c.4726C>T	c.(4726-4728)CCC>TCC	p.P1576S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1576	Laminin EGF-like 14.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGTCACAGGGGCGGCAGCGG	0.687													21	33					0	0	0.003330	0	0
COL20A1	57642	broad.mit.edu	37	20	61929325	61929325	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:61929325C>T	uc011aau.1	+	3	246	c.146C>T	c.(145-147)TCG>TTG	p.S49L		NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	49	Fibronectin type-III 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TGGAGAGAGTCGGAGGGGAGC	0.637													16	35					0	0	0.012319	0	0
OPRL1	4987	broad.mit.edu	37	20	62724125	62724125	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:62724125C>T	uc002yic.2	+	3	454	c.52C>T	c.(52-54)CTT>TTT	p.L18F	OPRL1_uc002yid.2_Missense_Mutation_p.L18F|OPRL1_uc002yif.3_Missense_Mutation_p.L18F	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	18	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					CGGCAGCCACCTTCAGGGCAA	0.647													28	55					0	0	0.003755	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737657	62737657	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr20:62737657G>A	uc011abt.1	-	1	528	c.528C>T	c.(526-528)GTC>GTT	p.V176V		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	176	Helical; Name=4; (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					GCAGAACCAGGACCGTGACGC	0.662													4	18					0	0	0.009096	0	0
POTED	317754	broad.mit.edu	37	21	14982936	14982936	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:14982936G>A	uc002yjb.1	+	1	439	c.387G>A	c.(385-387)ATG>ATA	p.M129I		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	129						plasma membrane				ovary(3)|skin(3)	6						GCGCCTTCATGGAGCCGAGGT	0.602													37	56					0	0	0.004289	0	0
CXADR	1525	broad.mit.edu	37	21	18937938	18937938	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:18937938C>T	uc002yki.2	+	7	1144	c.1026C>T	c.(1024-1026)GCC>GCT	p.A342A	CXADR_uc002ykj.1_Intron	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	342	Cytoplasmic (Potential).				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		AGGTAGCTGCCCCTAATCTAA	0.478													27	47					0	0	0.009535	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19715949	19715949	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:19715949G>A	uc002ykw.2	-	12	1333	c.1302C>T	c.(1300-1302)GTC>GTT	p.V434V		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	434	Extracellular (Potential).|MAM.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TTAATTTATGGACATTTTCAC	0.313													28	51					0	0	0.010818	0	0
SFRS15	57466	broad.mit.edu	37	21	33057964	33057964	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:33057964G>A	uc002ypd.2	-	17	2552	c.2126C>T	c.(2125-2127)CCA>CTA	p.P709L	SFRS15_uc002ype.2_Missense_Mutation_p.P709L|SFRS15_uc010glu.2_Missense_Mutation_p.P694L|SFRS15_uc002ypf.1_Missense_Mutation_p.P383L	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	709						nucleus	nucleotide binding|RNA binding				0						ACCAAAGCCTGGAGGCGGTAT	0.537													21	31					0	0	0.012319	0	0
IFNAR2	3455	broad.mit.edu	37	21	34619116	34619116	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:34619116C>T	uc002yrd.2	+	5	643	c.315C>T	c.(313-315)GCC>GCT	p.A105A	IFNAR2_uc002yrb.2_Silent_p.A105A|IFNAR2_uc002yrc.2_Silent_p.A105A|IFNAR2_uc002yre.2_Silent_p.A105A|IFNAR2_uc002yrf.2_Silent_p.A105A|IFNAR2_uc002yrg.2_5'UTR|IL10RB_uc002yrh.1_5'Flank|IL10RB_uc002yri.1_5'Flank	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	105	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	CACACGAGGCCTATGTCACCG	0.443													7	19					0	0	0.001984	0	0
CLIC6	54102	broad.mit.edu	37	21	36081686	36081686	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:36081686G>A	uc010gmt.1	+	6	1803	c.1803G>A	c.(1801-1803)AGG>AGA	p.R601R	CLIC6_uc002yuf.1_Silent_p.R583R	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	601	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						AGGCCCTGAGGAAGCTGGATA	0.453													27	44					0	0	0.009535	0	0
SIM2	6493	broad.mit.edu	37	21	38098456	38098456	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:38098456T>C	uc002yvr.2	+	6	636	c.580T>C	c.(580-582)TAT>CAT	p.Y194H	SIM2_uc002yvq.2_Missense_Mutation_p.Y194H	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	194					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						GATCAGGCAGTATATGCTGGA	0.612													30	89					0	0	0.004289	0	0
TTC3	7267	broad.mit.edu	37	21	38534350	38534350	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:38534350C>T	uc002yvz.2	+	31	3260	c.3155C>T	c.(3154-3156)TCA>TTA	p.S1052L	TTC3_uc011aee.1_Missense_Mutation_p.S742L|TTC3_uc002ywa.2_Missense_Mutation_p.S1052L|TTC3_uc002ywb.2_Missense_Mutation_p.S1052L|TTC3_uc010gnf.2_Missense_Mutation_p.S817L|TTC3_uc002ywc.2_Missense_Mutation_p.S742L|TTC3_uc002ywd.1_Missense_Mutation_p.S116L	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1052					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				ATCATCACTTCAAGTGAAGAC	0.269													8	7					0	0	0.003080	0	0
ETS2	2114	broad.mit.edu	37	21	40191432	40191432	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:40191432C>T	uc002yxg.2	+	8	1013	c.817C>T	c.(817-819)CCC>TCC	p.P273S	ETS2_uc002yxf.2_Missense_Mutation_p.P413S	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	273					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				GCCAGGGACTCCCAAAGACCA	0.547													19	27					0	0	0.008871	0	0
DSCAM	1826	broad.mit.edu	37	21	41424009	41424009	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:41424009C>T	uc002yyq.1	-	30	5513	c.5061G>A	c.(5059-5061)ACG>ACA	p.T1687T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1687	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGTCAGCATCCGTCAACAGAA	0.537													25	49					0	0	0.002780	0	0
C2CD2	25966	broad.mit.edu	37	21	43309253	43309253	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:43309253G>A	uc002yzw.2	-	14	2313	c.2071C>T	c.(2071-2073)CCC>TCC	p.P691S	C2CD2_uc002yzs.2_Missense_Mutation_p.P160S|C2CD2_uc002yzt.2_Missense_Mutation_p.P307S|C2CD2_uc002yzu.2_Missense_Mutation_p.P523S|C2CD2_uc002yzv.2_Missense_Mutation_p.P536S	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	691						cytosol|extracellular region|nucleus				ovary(1)	1						GGCTCCACGGGGGCACCGTTC	0.597													10	21					0	0	0.008291	0	0
POFUT2	23275	broad.mit.edu	37	21	46685454	46685454	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:46685454G>A	uc002zhc.2	-	9	1258	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	POFUT2_uc002zha.2_RNA|POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_3'UTR	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	411					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		GGTCTCCGCAGAACCTGTTGT	0.557													27	42					0	0	0.006320	0	0
COL6A2	1292	broad.mit.edu	37	21	47546096	47546096	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:47546096C>T	uc002zia.1	+	26	2449	c.2367C>T	c.(2365-2367)TTC>TTT	p.F789F	COL6A2_uc002zhy.1_Silent_p.F789F|COL6A2_uc002zhz.1_Silent_p.F789F|COL6A2_uc002zib.1_Silent_p.F195F|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	789	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TGACGCTGTTCTCCGACCTGG	0.627													97	181					0	0	0.003610	0	0
PCNT	5116	broad.mit.edu	37	21	47805772	47805772	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr21:47805772G>A	uc002zji.3	+	17	3445	c.3338G>A	c.(3337-3339)AGT>AAT	p.S1113N	PCNT_uc002zjj.2_Missense_Mutation_p.S995N	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1113	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TTATCCTTAAGTCACGAGATA	0.488													59	81					0	0	0.003610	0	0
MICAL3	57553	broad.mit.edu	37	22	18382276	18382276	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:18382276T>G	uc002zng.3	-	7	1239	c.886A>C	c.(886-888)ACA>CCA	p.T296P	MICAL3_uc011agl.1_Missense_Mutation_p.T296P|MICAL3_uc002znh.2_Missense_Mutation_p.T296P|MICAL3_uc002znj.1_5'UTR|MICAL3_uc002znk.1_Missense_Mutation_p.T296P|MICAL3_uc002znl.1_Intron|MICAL3_uc010grf.2_Missense_Mutation_p.T296P|MICAL3_uc011agm.1_Missense_Mutation_p.T296P	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	296						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		AAATAGTGTGTGTCATCTTTG	0.433													6	12					0	0	0.001168	0	0
SEPT5	5413	broad.mit.edu	37	22	19709347	19709347	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:19709347G>A	uc002zpv.1	+	10	942	c.817G>A	c.(817-819)GAG>AAG	p.E273K	SEPT5_uc002zpw.1_Intron|SEPT5_uc002zpx.1_RNA|SEPT5_uc002zpy.1_5'UTR|SEPT5_uc002zpz.1_5'Flank	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	septin 5	273					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)	1	Colorectal(54;0.0993)					CCCCGCAGTGGAGAACCAGGC	0.632													20	40					0	0	0.002299	0	0
KLHL22	84861	broad.mit.edu	37	22	20825682	20825682	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:20825682G>A	uc002zsl.1	-	3	457	c.348C>T	c.(346-348)AGC>AGT	p.S116S	KLHL22_uc011ahr.1_Intron|KLHL22_uc002zsm.1_Silent_p.S116S	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	116	BTB.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CATTGCTCAGGCTGAGCTCCA	0.537													33	43					0	0	0.010818	0	0
SLC7A4	6545	broad.mit.edu	37	22	21385909	21385910	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:21385909_21385910CC>TT	uc002zud.2	-	2	260_261	c.192_193GG>AA	c.(190-195)AAGGAG>AAAAAG	p.E65K	SLC7A4_uc002zue.2_Missense_Mutation_p.E65K	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	65					cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCAGCCACCTCCTTGGCCACGG	0.658													5	23					0	0	0.004672	0	0
YPEL1	29799	broad.mit.edu	37	22	22065004	22065004	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:22065004G>A	uc002zvl.2	-	2	362	c.30C>T	c.(28-30)TTC>TTT	p.F10F	YPEL1_uc002zvm.2_RNA	NM_013313	NP_037445	O60688	YPEL1_HUMAN	yippee-like 1	10						nucleus					0	Colorectal(54;0.105)					GATACGCTTGGAAAGTTTTGG	0.532													50	119					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	22682096	22682096	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:22682096C>T	uc011aim.1	+	37		c.3587C>T								Parts of antibodies, mostly variable regions.												0						ACCTCAGCCTCCCTGGCCATC	0.562													63	104					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	23117163	23117163	+	Splice_Site	SNP	G	C	C	rs138634938	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:23117163G>C	uc011aim.1	+	240		c.11745_splice	c.e240+2							Parts of antibodies, mostly variable regions.												0						GCTCACATAGGAGAGGTGGCA	0.537													22	15					0	0	0.003954	0	0
LOC96610	96610	broad.mit.edu	37	22	23162143	23162143	+	RNA	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:23162143G>A	uc011aim.1	+	283		c.12919G>A								Parts of antibodies, mostly variable regions.												0						ATCCCTGAGCGATTCTCTGGC	0.582													22	42					0	0	0.012319	0	0
SLC2A11	66035	broad.mit.edu	37	22	24217312	24217312	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:24217312C>T	uc002zyn.3	+	4	389	c.290C>T	c.(289-291)TCC>TTC	p.S97F	SLC2A11_uc002zyl.1_Missense_Mutation_p.S104F|SLC2A11_uc002zym.3_Missense_Mutation_p.S104F|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Missense_Mutation_p.S104F|SLC2A11_uc011ajd.1_Missense_Mutation_p.S91F|SLC2A11_uc002zyp.3_Missense_Mutation_p.S100F	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	97	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity	p.S104Y(1)		ovary(1)	1						AGGAAGAAGTCCCTCCTGGTG	0.512													17	34					0	0	0.007413	0	0
CABIN1	23523	broad.mit.edu	37	22	24456409	24456409	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:24456409C>T	uc002zzi.1	+	12	1549	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	CABIN1_uc002zzj.1_Silent_p.F424F|CABIN1_uc002zzl.1_Silent_p.F474F	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	474					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCATGAGTTCCTGCTGGAGA	0.537													16	37					0	0	0.007413	0	0
UPB1	51733	broad.mit.edu	37	22	24919669	24919670	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:24919669_24919670CC>TT	uc003aaf.2	+	9	1120_1121	c.999_1000CC>TT	c.(997-1002)AGCCGG>AGTTGG	p.R334W	UPB1_uc003aae.2_Missense_Mutation_p.R266W|UPB1_uc011ajt.1_Missense_Mutation_p.R334W	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	334	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					TGTCCCGTAGCCGGGATGGACT	0.545													50	58					0	0	0.004672	0	0
MYO18B	84700	broad.mit.edu	37	22	26388449	26388449	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:26388449G>A	uc003abz.1	+	40	6527	c.6277G>A	c.(6277-6279)GAT>AAT	p.D2093N	MYO18B_uc003aca.1_Missense_Mutation_p.D1974N|MYO18B_uc010guy.1_Missense_Mutation_p.D1975N|MYO18B_uc010guz.1_Missense_Mutation_p.D1973N|MYO18B_uc011aka.1_Missense_Mutation_p.D1247N|MYO18B_uc011akb.1_Missense_Mutation_p.D1606N|MYO18B_uc010gva.1_Missense_Mutation_p.D91N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2093						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CAGTGACAGTGATACTGAGAG	0.622													16	19					0	0	0.007413	0	0
MYO18B	84700	broad.mit.edu	37	22	26423113	26423113	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:26423113G>A	uc003abz.1	+	43	7423	c.7173G>A	c.(7171-7173)GTG>GTA	p.V2391V	MYO18B_uc003aca.1_Silent_p.V2272V|MYO18B_uc010guy.1_Silent_p.V2273V|MYO18B_uc010guz.1_Silent_p.V2271V|MYO18B_uc011aka.1_Silent_p.V1545V|MYO18B_uc011akb.1_Silent_p.V1904V|MYO18B_uc010gva.1_Silent_p.V374V|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2391						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGTCCTCTGTGGACGATGCGG	0.597													35	57					0	0	0.003271	0	0
SEZ6L	23544	broad.mit.edu	37	22	26736599	26736599	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:26736599G>A	uc003acb.2	+	10	2368	c.2212_splice	c.e10+1	p.E738_splice	SEZ6L_uc003acc.2_Splice_Site_p.E738_splice|SEZ6L_uc011akc.1_Splice_Site_p.E738_splice|SEZ6L_uc003acd.2_Splice_Site_p.E738_splice|SEZ6L_uc011akd.1_Splice_Site_p.E738_splice|SEZ6L_uc003ace.2_Splice_Site_p.E738_splice|SEZ6L_uc003acf.1_Splice_Site_p.E511_splice|SEZ6L_uc010gvc.1_Splice_Site_p.E511_splice	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like							endoplasmic reticulum membrane|integral to membrane		p.?(1)		ovary(4)|central_nervous_system(1)|pancreas(1)	6						AACTACATAGGTAGGTGTCTC	0.423													21	32					0	0	0.008871	0	0
DEPDC5	9681	broad.mit.edu	37	22	32193655	32193655	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:32193655C>T	uc003als.2	+	13	979	c.837C>T	c.(835-837)ATC>ATT	p.I279I	DEPDC5_uc011als.1_Silent_p.I279I|DEPDC5_uc011alu.1_Silent_p.I279I|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.I279I|DEPDC5_uc003alr.1_Silent_p.I279I|DEPDC5_uc011alt.1_Silent_p.I251I	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	279					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AACTCTTCATCCAGTATCCAG	0.443													11	28					0	0	0.010729	0	0
APOL1	8542	broad.mit.edu	37	22	36661318	36661318	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:36661318C>T	uc003apf.2	+	6	604	c.436C>T	c.(436-438)CGG>TGG	p.R146W	APOL1_uc011amn.1_Missense_Mutation_p.R23W|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.R162W|APOL1_uc011amo.1_Missense_Mutation_p.R23W|APOL1_uc011amp.1_Missense_Mutation_p.R146W|APOL1_uc011amq.1_Missense_Mutation_p.R128W|APOL1_uc010gwx.2_Missense_Mutation_p.R23W	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	146					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						AGAGTTTCCTCGGTTGAAAAG	0.468													28	44					0	0	0.006320	0	0
CSF2RB	1439	broad.mit.edu	37	22	37333888	37333888	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:37333888G>A	uc003aqa.3	+	14	2255	c.2038G>A	c.(2038-2040)GGG>AGG	p.G680R	CSF2RB_uc003aqc.3_Missense_Mutation_p.G686R	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	680	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TCCTGCTCTTGGGCCAAGGGT	0.657													14	16					0	0	0.002450	0	0
MPST	4357	broad.mit.edu	37	22	37420687	37420687	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:37420687C>T	uc003aqj.2	+	3	843	c.431C>T	c.(430-432)TCC>TTC	p.S144F	MPST_uc003aqi.1_Missense_Mutation_p.S144F|MPST_uc003aqm.2_Missense_Mutation_p.S144F|MPST_uc011amu.1_Missense_Mutation_p.S164F|MPST_uc003aql.2_Missense_Mutation_p.S144F|MPST_uc003aqn.2_Missense_Mutation_p.S144F|MPST_uc003aqo.2_Missense_Mutation_p.S144F	NM_001130517	NP_001123989	P25325	THTM_HUMAN	mercaptopyruvate sulfurtransferase isoform 2	144	Rhodanese 1.				cyanate catabolic process|response to toxin		3-mercaptopyruvate sulfurtransferase activity|thiosulfate sulfurtransferase activity				0						CCGCTCAGCTCCGGCAAGAGC	0.672													5	20					0	0	0.001168	0	0
GTPBP1	9567	broad.mit.edu	37	22	39117758	39117758	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:39117758T>C	uc003awg.2	+	5	1000	c.846T>C	c.(844-846)AAT>AAC	p.N282N		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	282					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					TGGGCAGCAATGCTGGCATCG	0.532													16	36					0	0	0.003163	0	0
NPTXR	23467	broad.mit.edu	37	22	39222732	39222732	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:39222732G>A	uc003awk.2	-	3	1025	c.871C>T	c.(871-873)CCA>TCA	p.P291S		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	291	Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					AAGGCATCTGGAGGACTGTAG	0.592													12	20					0	0	0.001368	0	0
APOBEC3A	200315	broad.mit.edu	37	22	39357541	39357541	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:39357541G>A	uc003awn.2	+	3	494	c.324G>A	c.(322-324)GGG>GGA	p.G108G	APOBEC3A_uc011aob.1_Silent_p.G90G|APOBEC3A_uc011aoc.1_Silent_p.G108G	NM_145699	NP_663745	P31941	ABC3A_HUMAN	phorbolin 1	108					cellular response to xenobiotic stimulus|defense response to virus|DNA cytosine deamination|DNA demethylation|innate immune response|negative regulation of transposition|negative regulation of viral genome replication	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					GCTGTGCCGGGGAAGTGCGTG	0.562													49	45					0	0	0.003610	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966992	39966992	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:39966992C>T	uc003ayc.2	+	1	235	c.235C>T	c.(235-237)CCG>TCG	p.P79S	CACNA1I_uc003ayd.2_Missense_Mutation_p.P79S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	79	Helical; Name=S1 of repeat I; (Potential).|I.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGTGTGCAACCCATATCCTCC	0.632													18	42					0	0	0.004990	0	0
FAM83F	113828	broad.mit.edu	37	22	40417943	40417943	+	Missense_Mutation	SNP	G	A	A	rs41276305	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:40417943G>A	uc003ayk.1	+	4	1523	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	477										breast(1)	1						GAGGCCCAACGAGAATTCCAG	0.642													21	36					0	0	0.012319	0	0
SLC25A17	10478	broad.mit.edu	37	22	41173122	41173122	+	Silent	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:41173122C>A	uc003azc.2	-	7	755	c.615G>T	c.(613-615)GTG>GTT	p.V205V	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Silent_p.V168V|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Silent_p.V132V	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	205	Solcar 3.|Helical; Name=5; (Potential).				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						CAATGATGAACACATCCAAGG	0.448													8	23					3.86212e-05	4.13104e-05	0.008291	1	0
ST13	6767	broad.mit.edu	37	22	41244318	41244318	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:41244318G>A	uc003aze.2	-	3	367	c.224C>T	c.(223-225)TCA>TTA	p.S75L	ST13_uc011aow.1_Missense_Mutation_p.S65L	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	75							protein binding, bridging				0						TTCCTCACTTGATGGTTCGTC	0.343													13	30					0	0	0.003163	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43218307	43218307	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:43218307G>A	uc003bdd.2	-	9	1001	c.781C>T	c.(781-783)CTG>TTG	p.L261L	ARFGAP3_uc010gzf.2_Silent_p.L217L|ARFGAP3_uc011apu.1_Silent_p.L189L	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	261	Potential.				intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						ACCTTGGCCAGGTCTTCCTGC	0.343													34	49					0	0	0.004289	0	0
BIK	638	broad.mit.edu	37	22	43524620	43524620	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:43524620C>T	uc003bdk.2	+	4	439	c.379C>T	c.(379-381)CCC>TCC	p.P127S		NM_001197	NP_001188	Q13323	BIK_HUMAN	BCL2-interacting killer	127					apoptosis|induction of apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	endomembrane system|integral to membrane					0		Ovarian(80;0.0694)				ATCCCCGAACCCCGGGTCCTG	0.577													33	49					0	0	0.004289	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45218332	45218333	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:45218332_45218333CC>TT	uc003bfd.2	+	11	1370_1371	c.1098_1099CC>TT	c.(1096-1101)ATCCCT>ATTTCT	p.P367S	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.P288S|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.P279S|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.P193S|ARHGAP8_uc003bfi.2_Missense_Mutation_p.P157S|ARHGAP8_uc010gzv.2_Missense_Mutation_p.P157S|ARHGAP8_uc003bfj.2_Missense_Mutation_p.P188S|ARHGAP8_uc003bfk.2_Missense_Mutation_p.P157S|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						AGCTGGTCATCCCTCCCGAAGT	0.465													25	45					0	0	0.004672	0	0
CELSR1	9620	broad.mit.edu	37	22	46794452	46794452	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:46794452G>A	uc003bhw.1	-	11	5495	c.5495C>T	c.(5494-5496)TCC>TTC	p.S1832F	CELSR1_uc011arc.1_Missense_Mutation_p.S153F	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1832	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ACGGCGCACGGAGACCTTGTC	0.682													20	40					0	0	0.002299	0	0
LMF2	91289	broad.mit.edu	37	22	50942023	50942023	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:50942023C>T	uc003blp.2	-	14	1952	c.1921G>A	c.(1921-1923)GGG>AGG	p.G641R	LMF2_uc010hba.2_Missense_Mutation_p.G463R|LMF2_uc003blo.2_Missense_Mutation_p.G616R	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	641	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ATGAGGAGCCCCCAGAGCAGG	0.692													4	2					0	0	0.000602	0	0
CPT1B	1375	broad.mit.edu	37	22	51012817	51012817	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr22:51012817G>A	uc003bmk.3	-	8	1079	c.917C>T	c.(916-918)TCC>TTC	p.S306F	CPT1B_uc003bml.2_Missense_Mutation_p.S306F|CPT1B_uc003bmm.2_Missense_Mutation_p.S306F|CPT1B_uc003bmo.2_Missense_Mutation_p.S306F|CPT1B_uc011asa.1_Missense_Mutation_p.S272F|CPT1B_uc003bmn.2_Missense_Mutation_p.S306F|CPT1B_uc011asb.1_Missense_Mutation_p.S306F|CHKB-CPT1B_uc003bmp.2_Missense_Mutation_p.S103F	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	306	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		CATCTGGTAGGAGCACATAGG	0.607													13	22					0	0	0.001855	0	0
SETD5	55209	broad.mit.edu	37	3	9490114	9490114	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:9490114G>A	uc003brt.2	+	16	2581	c.2146G>A	c.(2146-2148)GAG>AAG	p.E716K	SETD5_uc003brs.1_Missense_Mutation_p.E697K|SETD5_uc003bru.2_Missense_Mutation_p.E618K|SETD5_uc003brv.2_Missense_Mutation_p.E605K|SETD5_uc010hck.2_Missense_Mutation_p.E198K|SETD5_uc003brx.2_Missense_Mutation_p.E385K	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	716										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGAGAAGCAAGAGTGCCCTGT	0.398													18	33					0	0	0.008871	0	0
CPNE9	151835	broad.mit.edu	37	3	9754748	9754748	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:9754748A>C	uc003bsd.2	+	9	806	c.635A>C	c.(634-636)AAT>ACT	p.N212T		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	212	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					GCTCTGTGCAATGGAGACTAT	0.537													9	20					0	0	0.004482	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059122	11059122	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:11059122G>A	uc010hdq.2	+	3	636	c.225G>A	c.(223-225)GGG>GGA	p.G75G		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	75					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	ATCTCTGCGGGAAAAATGGTG	0.607													14	33					0	0	0.004007	0	0
VGLL4	9686	broad.mit.edu	37	3	11643403	11643404	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:11643403_11643404GG>AA	uc003bwf.2	-	3	523_524	c.157_158CC>TT	c.(157-159)CCC>TTC	p.P53F	VGLL4_uc010hdx.1_Missense_Mutation_p.P59F|VGLL4_uc003bwg.2_Missense_Mutation_p.P58F|VGLL4_uc011aun.1_5'UTR	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		CCTCTTGCTGGGGCTGATTGGG	0.599													31	54					0	0	0.004672	0	0
XPC	7508	broad.mit.edu	37	3	14199529	14199529	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:14199529C>T	uc011ave.1	-	9	1958	c.1854G>A	c.(1852-1854)GAG>GAA	p.E618E	XPC_uc011avf.1_Silent_p.E425E|XPC_uc011avg.1_Silent_p.E581E	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	618	Minimal sensor domain involved in damage recognition.|DNA-binding; preference for heteroduplex DNA.|Interaction with RAD23B.				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						CTTCTTTCTTCTCCCTGTCCA	0.453			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				18	149					0	0	0.010504	0	0
METTL6	131965	broad.mit.edu	37	3	15452786	15452786	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:15452786G>A	uc003bzs.1	-	6	1090	c.832C>T	c.(832-834)CTG>TTG	p.L278L	METTL6_uc011avp.1_Silent_p.L233L|METTL6_uc010hen.1_Silent_p.L82L	NM_152396	NP_689609	Q8TCB7	METL6_HUMAN	methyltransferase like 6	278							methyltransferase activity				0						TCCAGGCCCAGGACCACAGGA	0.408													8	30					0	0	0.003080	0	0
GALNTL2	117248	broad.mit.edu	37	3	16252733	16252733	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:16252733C>T	uc003car.3	+	5	1657	c.1182C>T	c.(1180-1182)CTC>CTT	p.L394L	GALNTL2_uc003caq.3_Silent_p.L127L	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	394	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GTGAAAACCTCGAACTGTCTT	0.532													14	26					0	0	0.001855	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751332	26751332	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:26751332G>A	uc003cdp.2	+	2	758	c.169G>A	c.(169-171)GAA>AAA	p.E57K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E57K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	57	LRRNT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						AAATCTCAAGGAAATACCTAG	0.413													25	55					0	0	0.003954	0	0
NEK10	152110	broad.mit.edu	37	3	27385792	27385792	+	Silent	SNP	G	A	A	rs150437265	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:27385792G>A	uc003cdt.1	-	6	607	c.333C>T	c.(331-333)ACC>ACT	p.T111T		NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	111							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						TCACCAAGGCGGTAAAGATCT	0.363													7	11					0	0	0.004482	0	0
ZNF860	344787	broad.mit.edu	37	3	32031962	32031962	+	Missense_Mutation	SNP	A	G	G	rs1808125	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:32031962A>G	uc011axg.1	+	2	1940	c.1391A>G	c.(1390-1392)CAT>CGT	p.H464R		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	464	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGACCTTCCATCACAATTCA	0.418													3	66					0	0	0.004672	0	0
GPD1L	23171	broad.mit.edu	37	3	32200531	32200531	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:32200531C>T	uc003cew.2	+	6	842	c.782C>T	c.(781-783)GCC>GTC	p.A261V		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	261					glycerol-3-phosphate catabolic process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0						TGCGGGGTGGCCGACCTGATC	0.622													23	40					0	0	0.007291	0	0
ARPP21	10777	broad.mit.edu	37	3	35770831	35770831	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:35770831C>T	uc003cgb.2	+	15	1526	c.1262C>T	c.(1261-1263)TCG>TTG	p.S421L	ARPP21_uc003cga.2_Missense_Mutation_p.S367L|ARPP21_uc011axy.1_Missense_Mutation_p.S387L|ARPP21_uc003cgf.2_Missense_Mutation_p.S222L|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	421	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TCCTCAGGATCGCTGTCCCGC	0.537													30	54					0	0	0.004289	0	0
ACAA1	30	broad.mit.edu	37	3	38173488	38173488	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38173488G>A	uc003cht.2	-	4	539	c.332C>T	c.(331-333)CCG>CTG	p.P111L	ACAA1_uc003chu.2_Missense_Mutation_p.P111L|ACAA1_uc010hgy.2_Intron|ACAA1_uc010hgz.2_Missense_Mutation_p.P111L|ACAA1_uc003chv.2_5'UTR	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	111					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		CACAGTCTCCGGGATGTCACT	0.527											OREG0015477	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	40					0	0	0.010818	0	0
OXSR1	9943	broad.mit.edu	37	3	38278449	38278449	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38278449C>T	uc003chy.2	+	11	1413	c.1071C>T	c.(1069-1071)CTC>CTT	p.L357L	OXSR1_uc010hhb.2_Silent_p.L291L	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	357					intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TTTCACAACTCAGGGTAAATT	0.378													24	47					0	0	0.003330	0	0
SCN5A	6331	broad.mit.edu	37	3	38622599	38622599	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38622599C>T	uc003cio.2	-	17	3245	c.3051G>A	c.(3049-3051)GAG>GAA	p.E1017E	SCN5A_uc003cin.2_Silent_p.E1017E|SCN5A_uc003cil.3_Silent_p.E1017E|SCN5A_uc010hhi.2_Silent_p.E1017E|SCN5A_uc010hhk.2_Silent_p.E1017E|SCN5A_uc011ayr.1_Silent_p.E1017E|SCN5A_uc010hhj.1_Silent_p.E628E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1017					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GAGGCACCTTCTCCGTCTCTG	0.697													8	12					0	0	0.006214	0	0
SCN10A	6336	broad.mit.edu	37	3	38739881	38739881	+	Silent	SNP	G	A	A	rs139221219		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38739881G>A	uc003ciq.2	-	27	4830	c.4830C>T	c.(4828-4830)ATC>ATT	p.I1610I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1610	IV.|Helical; Name=S5 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCAACAGCCCGATGTTGAAGA	0.552													53	64					0	0	0.003610	0	0
SCN10A	6336	broad.mit.edu	37	3	38793931	38793931	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38793931G>A	uc003ciq.2	-	11	1534	c.1534C>T	c.(1534-1536)CGA>TGA	p.R512*		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	512					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GAGATATCTCGGCCAGGGGAC	0.587													16	22					0	0	0.006122	0	0
SCN11A	11280	broad.mit.edu	37	3	38888478	38888478	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:38888478C>T	uc011ays.1	-	26	5282	c.5083G>A	c.(5083-5085)GGT>AGT	p.G1695S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1695					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCAGAGCCACCGAGTACCCTA	0.453													38	59					0	0	0.004878	0	0
KBTBD5	131377	broad.mit.edu	37	3	42727633	42727633	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:42727633G>A	uc003clv.1	+	1	623	c.523G>A	c.(523-525)GAC>AAC	p.D175N		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	175	BACK.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		ACTCTCGGCCGACGAGCTCAT	0.677													7	8					0	0	0.001984	0	0
ZNF445	353274	broad.mit.edu	37	3	44496777	44496777	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:44496777G>A	uc003cnf.2	-	3	613	c.265C>T	c.(265-267)CTC>TTC	p.L89F	ZNF445_uc011azv.1_Missense_Mutation_p.L89F|ZNF445_uc011azw.1_Missense_Mutation_p.L89F	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	89	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		GCCTTGGAGAGAACGTCAGGC	0.592													20	64					0	0	0.012319	0	0
ZNF167	55888	broad.mit.edu	37	3	44612222	44612222	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:44612222C>T	uc010hin.2	+	6	2008	c.1620C>T	c.(1618-1620)GAC>GAT	p.D540D	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Silent_p.D540D|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	540	C2H2-type 6.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		ATCTCATTGACCATCAGAGAA	0.448													54	56					0	0	0.003610	0	0
TGM4	7047	broad.mit.edu	37	3	44943397	44943397	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:44943397C>T	uc003coc.3	+	8	1018	c.945C>T	c.(943-945)ATC>ATT	p.I315I		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	315					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GCGAGAAAATCACCAGTATGA	0.463													13	28					0	0	0.001855	0	0
CCR9	10803	broad.mit.edu	37	3	45943373	45943374	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:45943373_45943374GG>AA	uc003coz.1	+	3	1250_1251	c.1093_1094GG>AA	c.(1093-1095)GGA>AAA	p.G365K	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Missense_Mutation_p.G353K|CCR9_uc003cpa.1_Missense_Mutation_p.G353K	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	365	Cytoplasmic (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		GACAACCTCAGGAGCACTCTCC	0.5													14	28					0	0	0.004672	0	0
CCR2	729230	broad.mit.edu	37	3	46399759	46399759	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:46399759C>T	uc003cpn.3	+	2	1226	c.741C>T	c.(739-741)ACC>ACT	p.T247T	CCR2_uc003cpm.3_Silent_p.T247T	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	247	Helical; Name=6; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TCATCTTCACCATCATGATTG	0.468													71	102					0	0	0.003610	0	0
CCR5	1234	broad.mit.edu	37	3	46414630	46414630	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:46414630C>T	uc003cpo.3	+	3	359	c.237C>T	c.(235-237)TTC>TTT	p.F79F	CCR5_uc010hjd.2_Silent_p.F79F	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	79	Helical; Name=2; (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ACCTGTTTTTCCTTCTTACTG	0.483													67	131					0	0	0.003610	0	0
PTH1R	5745	broad.mit.edu	37	3	46939393	46939393	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:46939393G>A	uc003cqm.2	+	6	565	c.362G>A	c.(361-363)GGG>GAG	p.G121E	PTH1R_uc003cqn.2_Missense_Mutation_p.G121E	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	121	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TGGCCGCTGGGGGCACCAGGT	0.607									Ollier_disease_/_Maffuci_syndrome				13	14					0	0	0.001368	0	0
UQCRC1	7384	broad.mit.edu	37	3	48642089	48642089	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:48642089G>A	uc003cub.1	-	4	467	c.422C>T	c.(421-423)CCG>CTG	p.P141L	UQCRC1_uc003cua.1_Missense_Mutation_p.P26L|UQCRC1_uc003cuc.1_Missense_Mutation_p.P141L|UQCRC1_uc003cud.1_Missense_Mutation_p.P141L	NM_003365	NP_003356	P31930	QCR1_HUMAN	ubiquinol-cytochrome c reductase core protein I	141					aerobic respiration|proteolysis		metalloendopeptidase activity|ubiquinol-cytochrome-c reductase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)	Atovaquone(DB01117)	GTTACCTTTCGGCAGATCCTT	0.577													19	20					0	0	0.010504	0	0
CELSR3	1951	broad.mit.edu	37	3	48666117	48666117	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:48666117G>A	uc003cuf.1	-	51	11845	c.11845C>T	c.(11845-11847)CGC>TGC	p.R3949C	SLC26A6_uc003cug.2_Missense_Mutation_p.R523C|SLC26A6_uc003cuh.2_Missense_Mutation_p.R544C|SLC26A6_uc010hke.2_Missense_Mutation_p.R395C|SLC26A6_uc003cuk.2_Missense_Mutation_p.R437C|SLC26A6_uc003cui.2_Missense_Mutation_p.R544C|SLC26A6_uc003cuj.2_Missense_Mutation_p.R544C|SLC26A6_uc011bbp.1_Missense_Mutation_p.R508C	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCCGAGGAGCGGAAGACCTTC	0.602													16	29					0	0	0.004007	0	0
CELSR3	1951	broad.mit.edu	37	3	48679376	48679377	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:48679376_48679377GA>AC	uc003cul.2	-	32	9012_9013	c.8731_8732TC>GT	c.(8731-8733)TCA>GTA	p.S2911V	CELSR3_uc003cuf.1_Missense_Mutation_p.S3009V|CELSR3_uc010hkf.2_Missense_Mutation_p.S201V|CELSR3_uc010hkg.2_Missense_Mutation_p.S894V	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2911	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTCGCTTTCTGAAGATGGAATG	0.599													9	20					0	0	0.004672	0	0
CELSR3	1951	broad.mit.edu	37	3	48690561	48690561	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:48690561G>A	uc003cul.2	-	10	5789	c.5508C>T	c.(5506-5508)CTC>CTT	p.L1836L	CELSR3_uc003cuf.1_Silent_p.L1906L|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1836	Extracellular (Potential).|Laminin G-like 2.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGTCCAGAAGGAGATGGGAAG	0.627													19	39					0	0	0.008871	0	0
RBM5	10181	broad.mit.edu	37	3	50155851	50155851	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:50155851C>T	uc003cyg.2	+	25	2558	c.2410C>T	c.(2410-2412)CGG>TGG	p.R804W	RBM5_uc011bdk.1_Missense_Mutation_p.R632W|RBM5_uc003cyh.2_Missense_Mutation_p.R261W|uc003cyi.1_Intron	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	804	Required for interaction with U2AF2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGATGCTGTCCGGAAAGCCAT	0.478													8	25					0	0	0.004482	0	0
SEMA3F	6405	broad.mit.edu	37	3	50225311	50225311	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:50225311C>T	uc003cyj.2	+	19	2319	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F	SEMA3F_uc003cyk.2_Silent_p.F676F	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	707					axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CTGCCCTCTTCCCACCACTGT	0.652													5	22					0	0	0.000602	0	0
SEMA3G	56920	broad.mit.edu	37	3	52476769	52476769	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:52476769G>A	uc003dea.1	-	2	270	c.270C>T	c.(268-270)CCC>CCT	p.P90P		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	90	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		TCACCTCCCGGGGATCTGGCC	0.617													15	22					0	0	0.006122	0	0
CACNA1D	776	broad.mit.edu	37	3	53787613	53787613	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:53787613C>T	uc003dgv.3	+	29	3853	c.3690C>T	c.(3688-3690)TCC>TCT	p.S1230S	CACNA1D_uc003dgu.3_Silent_p.S1250S|CACNA1D_uc003dgy.3_Silent_p.S1230S|CACNA1D_uc003dgw.3_Silent_p.S897S|CACNA1D_uc003dgx.1_Silent_p.S378S	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1230	IV.|Extracellular (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ACGAGCAGTCCAAGATGTTCA	0.517													23	41					0	0	0.002780	0	0
CACNA1D	776	broad.mit.edu	37	3	53835248	53835248	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:53835248C>T	uc003dgv.3	+	42	5367	c.5204C>T	c.(5203-5205)TCG>TTG	p.S1735L	CACNA1D_uc003dgu.3_Missense_Mutation_p.S1755L|CACNA1D_uc003dgy.3_Missense_Mutation_p.S1720L|CACNA1D_uc003dgw.3_Missense_Mutation_p.S1402L|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1735	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GCAGGAAATTCGGTGTGTCAT	0.468													29	43					0	0	0.007291	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56807811	56807811	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:56807811G>A	uc003dig.2	-	2	299	c.130C>T	c.(130-132)CGA>TGA	p.R44*	ARHGEF3_uc011bew.1_Nonsense_Mutation_p.R44*|ARHGEF3_uc003dih.2_Nonsense_Mutation_p.R76*|ARHGEF3_uc011bev.1_Nonsense_Mutation_p.R15*|ARHGEF3_uc003dif.2_Nonsense_Mutation_p.R50*|ARHGEF3_uc010hmy.1_5'UTR|ARHGEF3_uc003dii.2_Nonsense_Mutation_p.R44*	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	44					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		GACGTGACTCGGGAAAGGGGT	0.468													33	67					0	0	0.004289	0	0
GXYLT2	727936	broad.mit.edu	37	3	73016791	73016791	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:73016791C>T	uc003dpg.2	+	6	1070	c.1070C>T	c.(1069-1071)TCT>TTT	p.S357F		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	357	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						GAAGGTGTGTCTGTTCTGCAT	0.522													13	16					0	0	0.001855	0	0
ROBO2	6092	broad.mit.edu	37	3	77599980	77599980	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:77599980C>T	uc003dpy.3	+	8	1714	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F	ROBO2_uc003dpz.2_Silent_p.F361F|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.F361F	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	357	Ig-like C2-type 4.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ACCTACTTTTCCCAAACCAAC	0.413													18	36					0	0	0.008871	0	0
ROBO1	6091	broad.mit.edu	37	3	78796020	78796020	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:78796020G>A	uc003dqe.2	-	5	738	c.530C>T	c.(529-531)TCG>TTG	p.S177L	ROBO1_uc003dqb.2_Missense_Mutation_p.S138L|ROBO1_uc003dqc.2_Missense_Mutation_p.S138L|ROBO1_uc003dqd.2_Missense_Mutation_p.S138L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	177	Extracellular (Potential).|Ig-like C2-type 2.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CATGACATCCGAAGGGTTTTG	0.458													15	29					0	0	0.004007	0	0
GABRR3	200959	broad.mit.edu	37	3	97726706	97726706	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:97726706C>T	uc011bgr.1	-	6	656	c.656G>A	c.(655-657)GGA>GAA	p.G219E		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	219	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GGACTTGTTTCCGTGTTTCCA	0.343													5	8					0	0	0.000602	0	0
CPOX	1371	broad.mit.edu	37	3	98300346	98300346	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:98300346T>C	uc003dsx.2	-	6	1275	c.1182A>G	c.(1180-1182)GAA>GAG	p.E394E		NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	394	Important for dimerization.			Missing: Loss for dimerization.		mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						GCAGATTAAATTCTACATACC	0.388													16	31					0	0	0.004990	0	0
COL8A1	1295	broad.mit.edu	37	3	99513870	99513870	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:99513870G>A	uc003dtg.1	+	5	1370	c.1125G>A	c.(1123-1125)GGG>GGA	p.G375G	COL8A1_uc003dth.1_Silent_p.G375G|COL8A1_uc003dti.1_Silent_p.G376G	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	375	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GACCAAGAGGGGAGAAAGGAC	0.622													10	24					0	0	0.006214	0	0
SENP7	57337	broad.mit.edu	37	3	101090866	101090866	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:101090866T>C	uc003dut.2	-	7	893	c.782A>G	c.(781-783)GAT>GGT	p.D261G	SENP7_uc003duu.2_Missense_Mutation_p.D196G|SENP7_uc003duv.2_Missense_Mutation_p.D228G|SENP7_uc003duw.2_Missense_Mutation_p.D195G|SENP7_uc003dux.2_Missense_Mutation_p.D97G	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	261					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AGGCTGAGTATCAGATATTAA	0.274													15	33					0	0	0.004990	0	0
KIAA1524	57650	broad.mit.edu	37	3	108295144	108295144	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:108295144C>T	uc003dxb.3	-	8	1137	c.868G>A	c.(868-870)GGA>AGA	p.G290R	KIAA1524_uc003dxc.1_Missense_Mutation_p.G131R|KIAA1524_uc010hpw.1_Missense_Mutation_p.G131R	NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	290						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						GGATCCTTTCCATTAAGAAGA	0.274													41	76					0	0	0.003610	0	0
TRAT1	50852	broad.mit.edu	37	3	108568024	108568024	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:108568024G>A	uc003dxi.1	+	5	370	c.226G>A	c.(226-228)GAA>AAA	p.E76K	TRAT1_uc010hpx.1_Missense_Mutation_p.E39K	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	76	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						ACCAATGGATGAAAATTGCTA	0.343													18	20					0	0	0.008871	0	0
CCDC52	152185	broad.mit.edu	37	3	113212092	113212092	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:113212092G>C	uc003eag.3	-	6	744	c.453C>G	c.(451-453)ATC>ATG	p.I151M	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.I47M	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	151					cell division|mitosis	centriole|spindle	protein binding				0						TAGATTGGGTGATAGGGTCTT	0.403													7	22					0	0	0.004482	0	0
QTRTD1	79691	broad.mit.edu	37	3	113784185	113784185	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:113784185C>T	uc003eay.2	+	3	311	c.81C>T	c.(79-81)ACC>ACT	p.T27T	QTRTD1_uc003eaz.2_Silent_p.T39T|QTRTD1_uc011biq.1_Intron|QTRTD1_uc011bir.1_Intron|QTRTD1_uc003eba.2_5'Flank	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	27					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						GGGACCACACCATGGATATTC	0.507													18	39					0	0	0.006122	0	0
C3orf30	152405	broad.mit.edu	37	3	118865748	118865748	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:118865748C>T	uc003ecb.1	+	1	752	c.712C>T	c.(712-714)CCT>TCT	p.P238S	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.P238S	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	238										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TGACCAAAGTCCTTCTGTACA	0.458													31	52					0	0	0.012213	0	0
RABL3	285282	broad.mit.edu	37	3	120424951	120424951	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:120424951G>A	uc003edx.2	-	4	309	c.279C>T	c.(277-279)TTC>TTT	p.F93F		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	93	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		AGTCGTGTACGAAAATAATAC	0.378													19	30					0	0	0.010504	0	0
STXBP5L	9515	broad.mit.edu	37	3	121097730	121097730	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121097730G>A	uc003eec.3	+	22	2556	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K	STXBP5L_uc011bji.1_Missense_Mutation_p.E782K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	806					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGTTACAACAGAAGGTATGTT	0.383													13	18					0	0	0.002450	0	0
FBXO40	51725	broad.mit.edu	37	3	121340369	121340369	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121340369C>T	uc003eeg.2	+	3	303	c.93C>T	c.(91-93)ACC>ACT	p.T31T		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	31					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AACCCAACACCTCCTGCCTGG	0.597													32	55					0	0	0.009535	0	0
EAF2	55840	broad.mit.edu	37	3	121554156	121554156	+	Silent	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121554156A>T	uc003een.2	+	1	123	c.24A>T	c.(22-24)TCA>TCT	p.S8S	IQCB1_uc010hre.1_5'Flank|IQCB1_uc003eek.2_5'Flank|IQCB1_uc010hrf.1_5'Flank|EAF2_uc003eem.2_RNA|EAF2_uc003eeo.2_5'UTR	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	8					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		CGGGATTCTCACACCTAGACC	0.567													13	21					0	0	0.001855	0	0
SLC15A2	6565	broad.mit.edu	37	3	121634164	121634164	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121634164G>A	uc003eep.2	+	6	772	c.619G>A	c.(619-621)GGA>AGA	p.G207R	SLC15A2_uc011bjn.1_Missense_Mutation_p.G176R	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	207					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CATGCTGAGAGGTTAGGATTT	0.438													18	25					0	0	0.008871	0	0
SLC15A2	6565	broad.mit.edu	37	3	121658238	121658238	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121658238C>T	uc003eep.2	+	20	1957	c.1804C>T	c.(1804-1806)CCA>TCA	p.P602S	SLC15A2_uc011bjn.1_Missense_Mutation_p.P571S	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	602					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGAAGACATTCCAGCCAACAA	0.433													28	41					0	0	0.010818	0	0
CD86	942	broad.mit.edu	37	3	121822563	121822563	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121822563C>T	uc003eet.2	+	3	385	c.269C>T	c.(268-270)TCG>TTG	p.S90L	CD86_uc011bjo.1_Missense_Mutation_p.S8L|CD86_uc011bjp.1_Intron|CD86_uc003eeu.2_Missense_Mutation_p.S84L	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	90	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	AGTTTTGATTCGGACAGTTGG	0.433													31	46					0	0	0.010818	0	0
CASR	846	broad.mit.edu	37	3	121980560	121980560	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:121980560C>T	uc003eev.3	+	4	1050	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CASR_uc003eew.3_Silent_p.F226F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	226	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TTGAGAAATTCCGAGAGGAAG	0.522													59	79					0	0	0.003610	0	0
PARP9	83666	broad.mit.edu	37	3	122274910	122274910	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:122274910G>A	uc010hri.2	-	4	358	c.213C>T	c.(211-213)TTC>TTT	p.F71F	PARP9_uc003eff.3_Silent_p.F36F|PARP9_uc011bjs.1_Silent_p.F36F|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Silent_p.F36F|PARP9_uc003efh.2_Silent_p.F71F|PARP9_uc003efj.2_Silent_p.F36F	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	71					cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TTAAAATTTTGAAGTCATTGT	0.363													10	24					0	0	0.002450	0	0
UROC1	131669	broad.mit.edu	37	3	126226912	126226912	+	Silent	SNP	C	T	T	rs139167502	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:126226912C>T	uc003eiz.1	-	5	470	c.438G>A	c.(436-438)TCG>TCA	p.S146S	UROC1_uc010hsi.1_Silent_p.S146S	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	146					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTGTCATCTTCGACAAGTAGA	0.587													40	69					0	0	0.008740	0	0
MCM2	4171	broad.mit.edu	37	3	127334776	127334776	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:127334776C>A	uc003ejp.2	+	9	1557	c.1500C>A	c.(1498-1500)TTC>TTA	p.F500L	MCM2_uc011bkm.1_Missense_Mutation_p.F370L|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.F453L	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	500	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						TGGCCCTGTTCGGAGGGGAGC	0.537													44	76					1.86633e-21	2.03089e-21	0.003610	1	0
COPB2	9276	broad.mit.edu	37	3	139076710	139076710	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:139076710C>T	uc003etf.3	-	22	2846	c.2716G>A	c.(2716-2718)GAT>AAT	p.D906N	COPB2_uc011bmv.1_Missense_Mutation_p.D877N|COPB2_uc010hui.2_Missense_Mutation_p.D877N	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	906					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						TACAGTCAATCATCCAAAATA	0.338													5	7					0	0	0.000602	0	0
TRIM42	287015	broad.mit.edu	37	3	140407033	140407033	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:140407033C>T	uc003eto.1	+	3	1700	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	503						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CAGGGGACTCCCTGCCCTCCC	0.557													23	36					0	0	0.012319	0	0
RASA2	5922	broad.mit.edu	37	3	141291471	141291471	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:141291471G>A	uc003etz.1	+	12	1190	c.1190G>A	c.(1189-1191)AGA>AAA	p.R397K	RASA2_uc010huq.1_Missense_Mutation_p.R397K|RASA2_uc003eua.1_Missense_Mutation_p.R397K|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	397	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						ACAATTTTTAGAGGAAATTCC	0.348													15	29					0	0	0.004990	0	0
AGTR1	185	broad.mit.edu	37	3	148459575	148459575	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:148459575T>A	uc003ewg.2	+	4	1199	c.753T>A	c.(751-753)TTT>TTA	p.F251L	AGTR1_uc003ewh.2_Missense_Mutation_p.F251L|AGTR1_uc003ewi.2_Missense_Mutation_p.F251L|AGTR1_uc003ewj.2_Missense_Mutation_p.F251L|AGTR1_uc003ewk.2_Missense_Mutation_p.F251L	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	251	Helical; Name=6; (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	TCTTTTTCTTTTCCTGGATTC	0.363													25	33					0	0	0.003330	0	0
IGSF10	285313	broad.mit.edu	37	3	151171402	151171402	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:151171402C>T	uc011bod.1	-	3	485	c.485G>A	c.(484-486)GGA>GAA	p.G162E		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	162	LRR 5.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAGCTGATTTCCTTCCAAGTG	0.408													18	42					0	0	0.008871	0	0
AADAC	13	broad.mit.edu	37	3	151535366	151535366	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:151535366G>A	uc003eze.2	+	2	441	c.351G>A	c.(349-351)GTG>GTA	p.V117V		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	117	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GCTGGTGCGTGGGAAGTGCTG	0.443													17	39					0	0	0.007413	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906415	164906415	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:164906415G>A	uc003fej.3	-	2	2648	c.2204C>T	c.(2203-2205)CCC>CTC	p.P735L	SLITRK3_uc003fek.2_Missense_Mutation_p.P735L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	735	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ATGACCCACGGGAGGGGCCTT	0.443										HNSCC(40;0.11)			14	27					0	0	0.003163	0	0
SERPINI2	5276	broad.mit.edu	37	3	167159904	167159904	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:167159904G>A	uc003fer.1	-	8	1269	c.1211C>T	c.(1210-1212)TCA>TTA	p.S404L	SERPINI2_uc003fes.1_Missense_Mutation_p.S414L|SERPINI2_uc003fet.1_Missense_Mutation_p.S404L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	404					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CATTCACAGTGAATCTAAATC	0.318													5	17					0	0	0.001168	0	0
WDR49	151790	broad.mit.edu	37	3	167246950	167246950	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:167246950C>T	uc003fev.1	-	10	1546	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	WDR49_uc003feu.1_Missense_Mutation_p.E239K|WDR49_uc011bpd.1_Missense_Mutation_p.E478K|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	414	WD 6.									large_intestine(1)|ovary(1)|skin(1)	3						GCCAAAAATTCAGCCAGAAGT	0.383													16	28					0	0	0.004007	0	0
TNIK	23043	broad.mit.edu	37	3	170858230	170858230	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:170858230C>T	uc003fhh.2	-	13	1635	c.1290G>A	c.(1288-1290)CAG>CAA	p.Q430Q	TNIK_uc003fhi.2_Silent_p.Q430Q|TNIK_uc003fhj.2_Silent_p.Q430Q|TNIK_uc003fhk.2_Silent_p.Q430Q|TNIK_uc003fhl.2_Silent_p.Q430Q|TNIK_uc003fhm.2_Silent_p.Q430Q|TNIK_uc003fhn.2_Silent_p.Q430Q|TNIK_uc003fho.2_Silent_p.Q430Q	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	430	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CCCGGCGCATCTGCTCCTCAT	0.647													64	126					0	0	0.003610	0	0
NLGN1	22871	broad.mit.edu	37	3	173993129	173993129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:173993129C>T	uc003fio.1	+	5	1094	c.671C>T	c.(670-672)GCT>GTT	p.A224V	NLGN1_uc010hww.1_Missense_Mutation_p.A264V|NLGN1_uc003fip.1_Missense_Mutation_p.A224V	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	241	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			GGCGATCAGGCTGCAAAGGGG	0.368													30	47					0	0	0.004289	0	0
ATP11B	23200	broad.mit.edu	37	3	182554169	182554169	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:182554169C>T	uc003flb.2	+	6	720	c.463C>T	c.(463-465)CCT>TCT	p.P155S	ATP11B_uc003fla.2_Missense_Mutation_p.P155S	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	155	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			TGAAATTTTTCCTGCAGACTT	0.393													34	68					0	0	0.003271	0	0
HTR3C	170572	broad.mit.edu	37	3	183774074	183774074	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:183774074C>T	uc003fmk.2	+	4	423	c.389C>T	c.(388-390)TCC>TTC	p.S130F		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	130	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			ATCGTGGAATCGTGCGTATGC	0.502													26	47					0	0	0.007291	0	0
ECE2	9718	broad.mit.edu	37	3	184005631	184005631	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:184005631G>A	uc003fni.3	+	11	1662	c.1624G>A	c.(1624-1626)GTG>ATG	p.V542M	ECE2_uc011brh.1_Missense_Mutation_p.V395M|ECE2_uc003fnl.3_Missense_Mutation_p.V470M|ECE2_uc003fnm.3_Missense_Mutation_p.V424M|ECE2_uc003fnk.3_Missense_Mutation_p.V395M|ECE2_uc011bri.1_Missense_Mutation_p.V457M|ECE2_uc010hxv.2_Missense_Mutation_p.V186M	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	542	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACAGTCCTGTGTGCCGAGGTG	0.572													21	39					0	0	0.010504	0	0
ECE2	9718	broad.mit.edu	37	3	184008850	184008850	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:184008850G>A	uc003fni.3	+	17	2249	c.2211G>A	c.(2209-2211)GGG>GGA	p.G737G	ECE2_uc011brh.1_Silent_p.G590G|ECE2_uc003fnl.3_Silent_p.G665G|ECE2_uc003fnm.3_Silent_p.G619G|ECE2_uc003fnk.3_Silent_p.G590G|ECE2_uc011bri.1_Silent_p.G652G|ECE2_uc010hxv.2_3'UTR	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	737	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACAAAGAAGGGAACCTGCGGC	0.597													15	59					0	0	0.004007	0	0
EPHB3	2049	broad.mit.edu	37	3	184298565	184298565	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:184298565C>T	uc003foz.2	+	13	2874	c.2437C>T	c.(2437-2439)CGG>TGG	p.R813W		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	813	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			CATAGCCTATCGGAAGTTCAC	0.607													24	29					0	0	0.003330	0	0
FETUB	26998	broad.mit.edu	37	3	186370139	186370139	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:186370139C>T	uc010hyq.2	+	8	1129	c.868C>T	c.(868-870)CCC>TCC	p.P290S	FETUB_uc011brz.1_Missense_Mutation_p.P142S|FETUB_uc003fqn.2_Missense_Mutation_p.P290S|FETUB_uc003fqo.2_Missense_Mutation_p.P185S|FETUB_uc010hyr.2_Missense_Mutation_p.P253S|FETUB_uc010hys.2_Missense_Mutation_p.P142S|FETUB_uc003fqp.3_Missense_Mutation_p.P225S	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	290						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		GAAAAACACCCCCCCAACAGA	0.507													32	78					0	0	0.012213	0	0
RTP2	344892	broad.mit.edu	37	3	187416463	187416463	+	Silent	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:187416463G>C	uc003fro.1	-	2	930	c.501C>G	c.(499-501)CCC>CCG	p.P167P		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	167	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		GCTTCTCGCTGGGCTTCCAGT	0.647													13	23					0	0	0.001855	0	0
TPRG1	285386	broad.mit.edu	37	3	188956652	188956652	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:188956652C>T	uc003frv.1	+	9	1660	c.433C>T	c.(433-435)CGC>TGC	p.R145C	TPRG1_uc003frw.1_Missense_Mutation_p.R145C	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	145											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		CGCTGTCTATCGCATCTGCCT	0.498													38	48					0	0	0.006999	0	0
HRASLS	57110	broad.mit.edu	37	3	192973573	192973573	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:192973573C>A	uc003fta.2	+	2	539	c.134C>A	c.(133-135)CCT>CAT	p.P45H		NM_020386	NP_065119	Q9HDD0	HRSL1_HUMAN	HRAS-like suppressor	45											0	all_cancers(143;9.1e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000159)		AACATAGCACCTGTAGGTGAG	0.468													55	90					3.10202e-16	3.36033e-16	0.003610	1	0
MUC4	4585	broad.mit.edu	37	3	195493606	195493606	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:195493606C>T	uc011bto.1	-	9	13622	c.13162G>A	c.(13162-13164)GAA>AAA	p.E4388K	MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.E80K|MUC4_uc011bti.1_Missense_Mutation_p.E80K|MUC4_uc011btj.1_Missense_Mutation_p.E257K|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_Missense_Mutation_p.E25K|MUC4_uc011btm.1_Missense_Mutation_p.E205K|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.E280K|MUC4_uc003fvp.2_Missense_Mutation_p.E229K|MUC4_uc010hzu.1_Missense_Mutation_p.E1128K	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1273	NIDO.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGGCTGTTTTCGAAATAGCCA	0.498													27	25					0	0	0.009535	0	0
ZNF721	170960	broad.mit.edu	37	4	436628	436628	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:436628A>T	uc003gag.2	-	3	2319	c.1628T>A	c.(1627-1629)ATC>AAC	p.I543N	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.I575N|ZNF721_uc010ibe.2_Missense_Mutation_p.I531N	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	543						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TACATAAAGGATTGCGGACTG	0.403													4	117					0	0	0.009096	0	0
ZNF721	170960	broad.mit.edu	37	4	436647	436647	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:436647C>T	uc003gag.2	-	3	2300	c.1609G>A	c.(1609-1611)GCC>ACC	p.A537T	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.A569T|ZNF721_uc010ibe.2_Missense_Mutation_p.A525T	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	537						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTCTAAAGGCTTTGCCACAT	0.408													4	116					0	0	0.009096	0	0
PCGF3	10336	broad.mit.edu	37	4	737340	737340	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:737340C>T	uc011bva.1	+	8	816	c.341C>T	c.(340-342)TCT>TTT	p.S114F	PCGF3_uc003gbd.1_RNA|PCGF3_uc003gbe.2_Missense_Mutation_p.S114F|PCGF3_uc010ibh.2_Missense_Mutation_p.S114F|PCGF3_uc003gbg.1_Missense_Mutation_p.S80F|PCGF3_uc003gbh.2_Missense_Mutation_p.S80F	NM_006315	NP_006306	Q3KNV8	PCGF3_HUMAN	ring finger protein 3	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex	zinc ion binding				0						GAGACCTGCTCTGCAAAACAG	0.532													10	29					0	0	0.001368	0	0
SLC26A1	10861	broad.mit.edu	37	4	973225	973225	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:973225T>A	uc003gbx.2	-	3	766	c.644A>T	c.(643-645)GAA>GTA	p.E215V		NM_134425	NP_602297	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform b	Error:Variant_position_missing_in_Q9H2B4_after_alignment						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			ttccagaagttcctgcgagtc	0.01													10	14					0	0	0.008291	0	0
FAM193A	8603	broad.mit.edu	37	4	2692478	2692478	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:2692478C>T	uc010icl.2	+	13	2062	c.1711C>T	c.(1711-1713)CCT>TCT	p.P571S	FAM193A_uc010ick.2_Missense_Mutation_p.P771S|FAM193A_uc003gfd.2_Missense_Mutation_p.P571S|FAM193A_uc011bvm.1_Missense_Mutation_p.P593S|FAM193A_uc011bvn.1_Missense_Mutation_p.P571S|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P425S	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	571										ovary(3)	3						AGCCCTTCCACCTCCATCTAG	0.398													14	34					0	0	0.002450	0	0
HGFAC	3083	broad.mit.edu	37	4	3451138	3451138	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:3451138C>T	uc003ghc.2	+	14	1963	c.1960C>T	c.(1960-1962)CCC>TCC	p.P654S	HGFAC_uc010icw.2_Missense_Mutation_p.P661S	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	654					proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GCTTGTGGCTCCCTCCTGACC	0.647													10	17					0	0	0.006214	0	0
EVC2	132884	broad.mit.edu	37	4	5570324	5570324	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:5570324G>A	uc003gij.2	-	20	3458	c.3404C>T	c.(3403-3405)CCC>CTC	p.P1135L	EVC2_uc011bwb.1_Missense_Mutation_p.P575L|EVC2_uc003gik.2_Missense_Mutation_p.P1055L	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1135						integral to membrane				large_intestine(3)|ovary(2)	5						CGTGGCCCCGGGCACCATGGC	0.622													13	25					0	0	0.002450	0	0
SH3TC1	54436	broad.mit.edu	37	4	8237240	8237240	+	Silent	SNP	C	T	T	rs146468350		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:8237240C>T	uc003gkv.3	+	15	3464	c.3363C>T	c.(3361-3363)TTC>TTT	p.F1121F	SH3TC1_uc003gkw.3_Silent_p.F1045F|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	1121							binding			large_intestine(2)|pancreas(1)	3						ACATCTTCTTCGACGGGGCCT	0.642													43	77					0	0	0.013114	0	0
ACOX3	8310	broad.mit.edu	37	4	8411951	8411951	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:8411951G>A	uc010idk.2	-	6	820	c.675C>T	c.(673-675)CCC>CCT	p.P225P	ACOX3_uc003glc.3_Silent_p.P225P|ACOX3_uc003gld.3_Silent_p.P225P|ACOX3_uc003gle.1_Silent_p.P130P	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	225					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						GCACGATAAAGGGATGCAGCC	0.368													8	21					0	0	0.006214	0	0
DCAF16	54876	broad.mit.edu	37	4	17805290	17805290	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:17805290C>T	uc003gpn.2	-	3	1536	c.475G>A	c.(475-477)GCC>ACC	p.A159T	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	159						CUL4 RING ubiquitin ligase complex				ovary(1)	1						ATGGGAGTGGCTCTACTCAAT	0.463													47	73					0	0	0.003610	0	0
DHX15	1665	broad.mit.edu	37	4	24543617	24543617	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:24543617G>A	uc003gqx.2	-	8	1532	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	DHX15_uc003gqw.2_5'Flank	NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	455	Helicase C-terminal.				mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				CACCAAAAGGGACTCAACTCT	0.418													17	26					0	0	0.006122	0	0
ARAP2	116984	broad.mit.edu	37	4	36212031	36212031	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:36212031C>T	uc003gsq.1	-	6	1806	c.1468G>A	c.(1468-1470)GAT>AAT	p.D490N	ARAP2_uc003gsr.1_Missense_Mutation_p.D490N	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	490	PH 1.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GAGAGTTTATCCAGCCATCCT	0.383													9	24					0	0	0.004482	0	0
TLR1	7096	broad.mit.edu	37	4	38798375	38798375	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:38798375G>A	uc003gtl.2	-	4	2352	c.2078C>T	c.(2077-2079)TCC>TTC	p.S693F		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	693	Cytoplasmic (Potential).|TIR.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						AACAAAGATGGACTTGTAACT	0.398													38	69					0	0	0.009718	0	0
WDR19	57728	broad.mit.edu	37	4	39230141	39230141	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:39230141C>T	uc003gtv.2	+	17	1967	c.1813C>T	c.(1813-1815)CCT>TCT	p.P605S	WDR19_uc011byi.1_Missense_Mutation_p.P445S|WDR19_uc003gtw.1_Missense_Mutation_p.P202S	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	605					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						CACCAAAGTTCCTTTTGCTCA	0.408													20	38					0	0	0.012319	0	0
APBB2	323	broad.mit.edu	37	4	40936678	40936678	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:40936678T>C	uc003gvl.2	-	9	1773	c.1143A>G	c.(1141-1143)TTA>TTG	p.L381L	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Silent_p.L360L|APBB2_uc003gvn.2_Silent_p.L382L|APBB2_uc011byt.1_Silent_p.L343L	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	381					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CAAACTCTTTTAAACTGGGGT	0.438													15	12					0	0	0.004990	0	0
CORIN	10699	broad.mit.edu	37	4	47625718	47625718	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:47625718C>T	uc003gxm.2	-	19	2503	c.2410G>A	c.(2410-2412)GGA>AGA	p.G804R	CORIN_uc011bzf.1_Missense_Mutation_p.G665R|CORIN_uc011bzg.1_Missense_Mutation_p.G737R	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	804	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GTCCGACCTCCAAGGATCCTT	0.542													29	45					0	0	0.009535	0	0
CORIN	10699	broad.mit.edu	37	4	47746427	47746428	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:47746427_47746428CC>TT	uc003gxm.2	-	5	883_884	c.790_791GG>AA	c.(790-792)GGA>AAA	p.G264K	CORIN_uc011bzf.1_Missense_Mutation_p.G125K|CORIN_uc011bzg.1_Missense_Mutation_p.G197K|CORIN_uc011bzh.1_Missense_Mutation_p.G264K|CORIN_uc011bzi.1_Missense_Mutation_p.G264K|CORIN_uc003gxn.3_Missense_Mutation_p.G264K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	264	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ACATTGCTTTCCGTTTTCCTGC	0.292													33	42					0	0	0.004672	0	0
NFXL1	152518	broad.mit.edu	37	4	47886451	47886451	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:47886451G>T	uc010igh.2	-	15	2005	c.1828C>A	c.(1828-1830)CAG>AAG	p.Q610K	NFXL1_uc003gxp.2_Missense_Mutation_p.Q610K|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.Q610K	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	610						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CCTGTAGGCTGGTGCTACAAA	0.383													17	18					3.52763e-06	3.77886e-06	0.004990	1	0
KDR	3791	broad.mit.edu	37	4	55953871	55953871	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:55953871C>T	uc003has.2	-	27	3867	c.3565G>A	c.(3565-3567)GAT>AAT	p.D1189N	KDR_uc003hat.1_Missense_Mutation_p.D1189N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1189	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AGTCCAGAATCCTCTTCCATG	0.438			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			19	25					0	0	0.010504	0	0
POLR2B	5431	broad.mit.edu	37	4	57891066	57891066	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:57891066G>C	uc003hcl.1	+	22	3022	c.2979G>C	c.(2977-2979)AAG>AAC	p.K993N	POLR2B_uc011cae.1_Missense_Mutation_p.K986N|POLR2B_uc011caf.1_Missense_Mutation_p.K918N|POLR2B_uc003hcm.1_Missense_Mutation_p.K486N	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	993					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					CGGCTAACAAGGGTGAAATTG	0.338													24	39					0	0	0.003330	0	0
TECRL	253017	broad.mit.edu	37	4	65180440	65180440	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:65180440G>A	uc003hcv.2	-	5	586	c.477C>T	c.(475-477)CTC>CTT	p.L159L	TECRL_uc003hcw.2_Silent_p.L159L	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	159	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						AATAAAAGAGGAGGTATATTA	0.313													20	42					0	0	0.002299	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519938	69519938	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:69519938C>T	uc011cal.1	-	5	1168	c.1130G>A	c.(1129-1131)GGA>GAA	p.G377E		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	377					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GCCATTGGTTCCACCATGAGT	0.388													72	101					0	0	0.003610	0	0
MUC7	4589	broad.mit.edu	37	4	71347158	71347158	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:71347158G>A	uc011cat.1	+	4	985	c.697G>A	c.(697-699)GAG>AAG	p.E233K	MUC7_uc011cau.1_Missense_Mutation_p.E233K|MUC7_uc003hfj.2_Missense_Mutation_p.E233K|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	233	3.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			AGCTCCACCAGAGACCACAGC	0.592													43	101					0	0	0.009718	0	0
PRKG2	5593	broad.mit.edu	37	4	82073116	82073116	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:82073116G>A	uc003hmh.2	-	7	1097	c.1083C>T	c.(1081-1083)ATC>ATT	p.I361I	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Silent_p.I361I	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	361	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GAATTCACCTGATAAGAGCTT	0.323													28	76					0	0	0.002836	0	0
THAP9	79725	broad.mit.edu	37	4	83839810	83839810	+	Silent	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:83839810A>T	uc003hnt.2	+	5	2564	c.2445A>T	c.(2443-2445)GTA>GTT	p.V815V	THAP9_uc003hns.1_Silent_p.V671V|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Silent_p.V532V	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	815							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				ATCTTTTTGTAGATGTGAATA	0.313													17	39					0	0	0.008871	0	0
HELQ	113510	broad.mit.edu	37	4	84350736	84350736	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:84350736G>A	uc003hom.2	-	12	2638	c.2459C>T	c.(2458-2460)TCT>TTT	p.S820F	HELQ_uc010ikb.2_Missense_Mutation_p.S753F|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	820							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CTCTTCTTCAGACTTATAAAT	0.318								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					25	46					0	0	0.005443	0	0
SLC10A6	345274	broad.mit.edu	37	4	87744896	87744897	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:87744896_87744897GG>AA	uc003hqd.2	-	6	1226_1227	c.1078_1079CC>TT	c.(1078-1080)CCA>TTA	p.P360L		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	360	Cytoplasmic (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		GCAATCCATTGGCCCTGGTGGC	0.545													20	26					0	0	0.004672	0	0
AFF1	4299	broad.mit.edu	37	4	88052973	88052973	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:88052973G>T	uc003hqj.3	+	17	3516	c.3109G>T	c.(3109-3111)GAT>TAT	p.D1037Y	AFF1_uc011ccz.1_Missense_Mutation_p.D1044Y|AFF1_uc003hqk.3_Missense_Mutation_p.D1037Y|AFF1_uc011cda.1_Missense_Mutation_p.D675Y	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1037						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		ATCCTTCTCAGATGCCACAGC	0.313													11	19					0.00244969	0.00261253	0.002450	1	0
DMP1	1758	broad.mit.edu	37	4	88583737	88583737	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:88583737G>A	uc003hqv.2	+	6	911	c.807G>A	c.(805-807)AGG>AGA	p.R269R	DMP1_uc003hqw.2_Silent_p.R253R	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	269					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		AAATTTTTAGGAAGTCTCGCA	0.438													17	16					0	0	0.006122	0	0
FAM190A	401145	broad.mit.edu	37	4	91549260	91549260	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:91549260G>A	uc003hsv.3	+	6	2149	c.1809G>A	c.(1807-1809)GCG>GCA	p.A603A	FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Silent_p.A603A	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	603										large_intestine(1)|ovary(1)	2						GTCCATCTGCGGATTGGCCTC	0.443													29	36					0	0	0.008361	0	0
GRID2	2895	broad.mit.edu	37	4	94006285	94006285	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:94006285G>A	uc011cdt.1	+	3	642	c.384G>A	c.(382-384)AGG>AGA	p.R128R	GRID2_uc010ikx.2_Silent_p.R128R|GRID2_uc011cdu.1_Intron|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	128	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GGACCCCAAGGAGTGGCTGTG	0.552													35	42					0	0	0.003755	0	0
GRID2	2895	broad.mit.edu	37	4	94376916	94376916	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:94376916G>A	uc011cdt.1	+	11	1907	c.1649G>A	c.(1648-1650)CGA>CAA	p.R550Q	GRID2_uc011cdu.1_Missense_Mutation_p.R455Q	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	550	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTACTACTTCGAAGGGCTGAA	0.483													30	64					0	0	0.009535	0	0
DAPP1	27071	broad.mit.edu	37	4	100756871	100756871	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:100756871G>A	uc003hvf.3	+	2	283	c.193G>A	c.(193-195)GAG>AAG	p.E65K	DAPP1_uc011cek.1_Missense_Mutation_p.E65K|DAPP1_uc010ilh.2_Missense_Mutation_p.E65K	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	65	SH2.				signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		GGACAGCAATGAGACCACCGG	0.527													31	37					0	0	0.008361	0	0
CENPE	1062	broad.mit.edu	37	4	104063017	104063017	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:104063017C>T	uc003hxb.1	-	35	5443	c.5353G>A	c.(5353-5355)GAG>AAG	p.E1785K	CENPE_uc003hxc.1_Missense_Mutation_p.E1760K|CENPE_uc003hxd.1_5'Flank	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1785	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCCTGCTGCTCTTTCAGATGC	0.294													22	31					0	0	0.003330	0	0
CENPE	1062	broad.mit.edu	37	4	104080165	104080165	+	Splice_Site	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:104080165A>G	uc003hxb.1	-	22	2691	c.2601_splice	c.e22+1	p.E867_splice	CENPE_uc003hxc.1_Splice_Site_p.E842_splice	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E						blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCTTGTACCAACCTCGGTCTT	0.398													14	32					0	0	0.002450	0	0
DKK2	27123	broad.mit.edu	37	4	107847039	107847039	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:107847039G>A	uc003hyi.2	-	2	995	c.290C>T	c.(289-291)TCA>TTA	p.S97L	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.S97L	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	97	DKK-type Cys-1.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GCAGGCCGATGATCCTTGGTG	0.507													35	51					0	0	0.002836	0	0
ENPEP	2028	broad.mit.edu	37	4	111398175	111398175	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:111398175G>A	uc003iab.3	+	1	947	c.605G>A	c.(604-606)GGA>GAA	p.G202E		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	202	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TCCCTCGTGGGATTTTATAGA	0.498													31	52					0	0	0.002836	0	0
ANK2	287	broad.mit.edu	37	4	114277530	114277530	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:114277530G>A	uc003ibe.3	+	38	7856	c.7756G>A	c.(7756-7758)GAG>AAG	p.E2586K	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.E2601K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2553					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CACACCTGAAGAGGAGATGTT	0.383													25	47					0	0	0.006320	0	0
NDST4	64579	broad.mit.edu	37	4	115767138	115767138	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:115767138G>A	uc003ibu.2	-	10	2635	c.1956C>T	c.(1954-1956)TTC>TTT	p.F652F	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	652	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATGGTGTAGGGAAAAAGTCCA	0.358													12	27					0	0	0.001855	0	0
TNIP3	79931	broad.mit.edu	37	4	122059830	122059830	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:122059830G>A	uc010ing.2	-	10	1091	c.895C>T	c.(895-897)CAG>TAG	p.Q299*	TNIP3_uc010inh.2_Nonsense_Mutation_p.Q299*|TNIP3_uc011cgj.1_Intron	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	299										ovary(1)	1						GCATACCACTGATAGTCTGGC	0.383													19	43					0	0	0.008871	0	0
TRPC3	7222	broad.mit.edu	37	4	122831542	122831542	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:122831542C>T	uc003ieg.2	-	6	1633	c.1559G>A	c.(1558-1560)GGA>GAA	p.G520E	TRPC3_uc010inr.2_Missense_Mutation_p.G392E|TRPC3_uc003ief.2_Missense_Mutation_p.G447E|TRPC3_uc011cgl.1_Missense_Mutation_p.G184E	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	435	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CCACATCATTCCTGTCACAAC	0.468													16	34					0	0	0.006122	0	0
PCDH10	57575	broad.mit.edu	37	4	134073035	134073035	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:134073035G>T	uc003iha.2	+	1	2566	c.1740G>T	c.(1738-1740)GGG>GGT	p.G580G	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Silent_p.G580G	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	580	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CTCTACCAGGGCGCAACGGGA	0.682													17	26					1.15088e-07	1.23559e-07	0.004007	1	0
GYPA	2993	broad.mit.edu	37	4	145038032	145038032	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:145038032G>A	uc003ijo.3	-	5	448	c.332C>T	c.(331-333)TCT>TTT	p.S111F	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.S78F|GYPA_uc003ijp.3_Missense_Mutation_p.S79F|GYPA_uc010ioq.2_Missense_Mutation_p.S98F|GYPA_uc010ior.2_Missense_Mutation_p.S46F|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	111	Helical.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					AATACCGTAAGAAATTAAGAG	0.373													56	94					0	0	0.003610	0	0
SH3D19	152503	broad.mit.edu	37	4	152053487	152053487	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:152053487G>A	uc010ipl.1	-	18	3057	c.1967C>T	c.(1966-1968)TCT>TTT	p.S656F	SH3D19_uc003imb.2_Missense_Mutation_p.S411F|SH3D19_uc003imc.2_Missense_Mutation_p.S597F|SH3D19_uc003ime.2_Missense_Mutation_p.S633F|SH3D19_uc010ipm.2_Missense_Mutation_p.S633F	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	656					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GCCTACCTGAGAGTTTGAGCC	0.358													9	26					0	0	0.001855	0	0
FHDC1	85462	broad.mit.edu	37	4	153897236	153897236	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:153897236C>T	uc003inf.2	+	11	2868	c.2793C>T	c.(2791-2793)CCC>CCT	p.P931P		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	931					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CCCAGAATCCCCCCAGCAGCA	0.672													6	16					0	0	0.001168	0	0
DCHS2	54798	broad.mit.edu	37	4	155253658	155253660	+	Missense_Mutation	TNP	TCC	CAT	CAT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:155253658_155253660TCC>CAT	uc003inw.2	-	9	2203_2205	c.2203_2205GGA>ATG	c.(2203-2205)GGA>ATG	p.G735M	DCHS2_uc003inx.2_Missense_Mutation_p.G1234M	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	735	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGAAGAATTTTCCATCAGACAAA	0.384													23	36					0	0	0.004672	0	0
SPOCK3	50859	broad.mit.edu	37	4	167663158	167663158	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:167663158C>T	uc003iri.1	-	10	1134	c.993G>A	c.(991-993)AAG>AAA	p.K331K	SPOCK3_uc011cjp.1_Silent_p.K288K|SPOCK3_uc011cjq.1_Silent_p.K340K|SPOCK3_uc011cjr.1_Silent_p.K211K|SPOCK3_uc003irj.1_Silent_p.K328K|SPOCK3_uc011cjs.1_Silent_p.K280K|SPOCK3_uc011cjt.1_Silent_p.K239K|SPOCK3_uc011cju.1_Silent_p.K224K|SPOCK3_uc011cjv.1_Silent_p.K233K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	331	Thyroglobulin type-1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CTAGGAGCTTCTTTACCCCTT	0.378													33	71					0	0	0.003755	0	0
DDX60	55601	broad.mit.edu	37	4	169208310	169208310	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:169208310A>T	uc003irp.2	-	10	1520	c.1228T>A	c.(1228-1230)TAT>AAT	p.Y410N		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	410							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTCCAGAGATATTCATAATCT	0.353													18	43					0	0	0.006122	0	0
ODZ3	55714	broad.mit.edu	37	4	183664415	183664415	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:183664415A>G	uc003ivd.1	+	18	3509	c.3472A>G	c.(3472-3474)ATT>GTT	p.I1158V	ODZ3_uc003ive.1_Missense_Mutation_p.I564V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1158	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AAGGCGCAGCATTTCCTGCCC	0.532													14	35					0	0	0.002450	0	0
ODZ3	55714	broad.mit.edu	37	4	183676209	183676209	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:183676209C>T	uc003ivd.1	+	21	4726	c.4689C>T	c.(4687-4689)ACC>ACT	p.T1563T	ODZ3_uc003ive.1_Silent_p.T976T	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1563	YD 2.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATGGCAACACCCTTAGAATTA	0.398													16	21					0	0	0.006122	0	0
ODZ3	55714	broad.mit.edu	37	4	183713613	183713613	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:183713613G>A	uc003ivd.1	+	25	5825	c.5788G>A	c.(5788-5790)GAG>AAG	p.E1930K		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1930	YD 9.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGACTACAACGAGGAAGGGCT	0.488													34	49					0	0	0.003755	0	0
TRIML1	339976	broad.mit.edu	37	4	189065010	189065010	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:189065010G>A	uc003izm.1	+	4	869	c.754G>A	c.(754-756)GAA>AAA	p.E252K	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	252					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGGAGCCCTGGAAAGGTAGGC	0.488													57	106					0	0	0.003610	0	0
TRIML1	339976	broad.mit.edu	37	4	189068196	189068196	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr4:189068196G>A	uc003izm.1	+	6	1192	c.1077G>A	c.(1075-1077)AAG>AAA	p.K359K	TRIML1_uc003izn.1_Silent_p.K83K	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	359	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCATCTGCAAGGACTCTGTGA	0.532													25	48					0	0	0.003330	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	181635	181635	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:181635G>A	uc003jak.2	+	17	3391	c.3341G>A	c.(3340-3342)AGA>AAA	p.R1114K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1114					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TTAGAACTCAGAATCCAAGAA	0.532													20	41					0	0	0.002780	0	0
EXOC3	11336	broad.mit.edu	37	5	454110	454111	+	Silent	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:454110_454111CC>TT	uc003jba.2	+	4	1118_1119	c.990_991CC>TT	c.(988-993)GACCTG>GATTTG	p.330_331DL>DL		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	341_342					exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			CATCGGAAGACCTGGAAGCCAA	0.525													9	9					0	0	0.004672	0	0
CTNND2	1501	broad.mit.edu	37	5	11199584	11199584	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:11199584G>T	uc003jfa.1	-	11	2096	c.1951C>A	c.(1951-1953)CTG>ATG	p.L651M	CTNND2_uc010itt.2_Missense_Mutation_p.L560M|CTNND2_uc011cmy.1_Missense_Mutation_p.L314M|CTNND2_uc011cmz.1_Missense_Mutation_p.L218M|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.L218M	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	651	ARM 4.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CGGATCTCCAGGTCAGTCGTC	0.423													43	87					2.0833e-19	2.26187e-19	0.003610	1	0
DNAH5	1767	broad.mit.edu	37	5	13753464	13753464	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:13753464C>T	uc003jfd.2	-	63	10792	c.10750G>A	c.(10750-10752)GAT>AAT	p.D3584N	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3584	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACAAGTCATCATTTGGCAGA	0.388									Kartagener_syndrome				19	52					0	0	0.010504	0	0
DNAH5	1767	broad.mit.edu	37	5	13864514	13864514	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:13864514C>T	uc003jfd.2	-	28	4630	c.4588G>A	c.(4588-4590)GAA>AAA	p.E1530K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1530	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCTCTATTTCCTCTTTATAT	0.383									Kartagener_syndrome				23	44					0	0	0.006320	0	0
TRIO	7204	broad.mit.edu	37	5	14462946	14462946	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:14462946G>A	uc003jff.2	+	36	5585	c.5579G>A	c.(5578-5580)GGC>GAC	p.G1860D	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.G1509D|TRIO_uc003jfi.1_Missense_Mutation_p.G163D	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1860					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GAAGAGGAAGGCGAGGAGGGG	0.622													17	55					0	0	0.004990	0	0
CDH10	1008	broad.mit.edu	37	5	24537507	24537507	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:24537507G>A	uc003jgr.1	-	3	840	c.508C>T	c.(508-510)CCC>TCC	p.P170S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	170	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GACATTTCGGGAACACTAGCT	0.338										HNSCC(23;0.051)			45	71					0	0	0.003610	0	0
RXFP3	51289	broad.mit.edu	37	5	33937921	33937921	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:33937921T>A	uc003jic.1	+	1	1433	c.1076T>A	c.(1075-1077)TTC>TAC	p.F359Y		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	359	Helical; Name=7; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						GCGGTGCCCTTCAGCCAGGAG	0.577													35	54					0	0	0.002836	0	0
NIPBL	25836	broad.mit.edu	37	5	36986157	36986157	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:36986157C>T	uc003jkl.3	+	10	3374	c.2875C>T	c.(2875-2877)CCG>TCG	p.P959S	NIPBL_uc003jkk.3_Missense_Mutation_p.P959S|NIPBL_uc003jkm.1_Missense_Mutation_p.P838S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	959					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TTTTGTCATTCCGAAAATCAA	0.383													30	48					0	0	0.009535	0	0
DAB2	1601	broad.mit.edu	37	5	39381627	39381627	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:39381627G>A	uc003jlx.2	-	11	1964	c.1433C>T	c.(1432-1434)GCC>GTC	p.A478V	DAB2_uc003jlw.2_Missense_Mutation_p.A457V	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	478					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GGGCTGCAGGGCTGTAGGTTG	0.542													35	68					0	0	0.003755	0	0
CARD6	84674	broad.mit.edu	37	5	40852466	40852466	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:40852466C>T	uc003jmg.2	+	3	1107	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	344					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GGGATTCAATCCTCAGTCACA	0.468													12	27					0	0	0.001368	0	0
CARD6	84674	broad.mit.edu	37	5	40853921	40853921	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:40853921C>T	uc003jmg.2	+	3	2562	c.2487C>T	c.(2485-2487)TGC>TGT	p.C829C		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	829					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TACAGGCCTGCCCTGAGAGAC	0.493													5	324					0	0	0.001168	0	0
HEATR7B2	133558	broad.mit.edu	37	5	40998216	40998216	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:40998216C>T	uc003jmj.3	-	42	5186	c.4696G>A	c.(4696-4698)GCA>ACA	p.A1566T	HEATR7B2_uc003jmi.3_Missense_Mutation_p.A1121T	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1566							binding			ovary(6)|central_nervous_system(2)	8						GCCTCAGCTGCTCTCTGGACA	0.463													52	117					0	0	0.003610	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41033239	41033239	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:41033239G>A	uc003jmj.3	-	23	2755	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	HEATR7B2_uc003jmi.3_Silent_p.F310F	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	755							binding			ovary(6)|central_nervous_system(2)	8						TGCTTCTTGTGAAACTCATTT	0.433													13	24					0	0	0.002450	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41048515	41048515	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:41048515C>T	uc003jmj.3	-	16	2085	c.1595G>A	c.(1594-1596)GGG>GAG	p.G532E	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G87E	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	532	HEAT 6.						binding			ovary(6)|central_nervous_system(2)	8						CTTCAAAAGCCCTATTGCACC	0.453													8	21					0	0	0.004482	0	0
C6	729	broad.mit.edu	37	5	41172438	41172438	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:41172438C>T	uc003jmk.2	-	9	1390	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	C6_uc003jml.1_Missense_Mutation_p.E394K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	394	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTGGCTTCTTCCTCGGTTAAA	0.423													15	27					0	0	0.004990	0	0
GHR	2690	broad.mit.edu	37	5	42566007	42566007	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:42566007G>A	uc003jmt.2	+	2	74	c.31G>A	c.(31-33)GCA>ACA	p.A11T	GHR_uc011cpq.1_5'UTR	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	11					2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GTTGACCTTGGCACTGGCAGG	0.453													42	68					0	0	0.003610	0	0
FST	10468	broad.mit.edu	37	5	52778781	52778781	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:52778781G>A	uc003jpd.2	+	2	184	c.157G>A	c.(157-159)GAG>AAG	p.E53K	FST_uc003jpc.2_Missense_Mutation_p.E53K	NM_013409	NP_037541	P19883	FST_HUMAN	follistatin isoform FST344 precursor	53	TB.				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of follicle-stimulating hormone secretion|negative regulation of transcription from RNA polymerase II promoter|positive regulation of hair follicle development	extracellular region	activin binding|protein binding|signal transducer activity				0		Ovarian(174;1.78e-06)|Lung NSC(810;3.55e-06)|Breast(144;4.08e-05)				ACTGAGCAAGGAGGAGTGCTG	0.612											OREG0016608	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	25					0	0	0.008871	0	0
NDUFS4	4724	broad.mit.edu	37	5	52978999	52978999	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:52978999C>T	uc003jpe.2	+	5	504	c.476C>T	c.(475-477)TCT>TTT	p.S159F		NM_002495	NP_002486	O43181	NDUS4_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 4	159					brain development|cAMP-mediated signaling|mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|positive regulation of fibroblast proliferation|reactive oxygen species metabolic process|regulation of protein phosphorylation|response to cAMP|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1		Lung NSC(810;8.27e-05)|Breast(144;0.0848)			NADH(DB00157)	AAGTCCAAGTCTTATGGTGCA	0.393													47	82					0	0	0.003610	0	0
GAPT	202309	broad.mit.edu	37	5	57790406	57790406	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:57790406G>A	uc003jro.1	+	3	437	c.43G>A	c.(43-45)GGA>AGA	p.G15R		NM_152687	NP_689900	Q8N292	GAPT_HUMAN	GRB2-binding adaptor protein, transmembrane	15	Helical; (Potential).				B cell activation	integral to membrane|plasma membrane					0						CATTTCTGTAGGAATTTCGCT	0.403													10	36					0	0	0.010729	0	0
PDE4D	5144	broad.mit.edu	37	5	58511757	58511757	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:58511757G>A	uc003jsa.2	-	2	665	c.493C>T	c.(493-495)CCC>TCC	p.P165S	PDE4D_uc003jrx.2_Missense_Mutation_p.P29S|PDE4D_uc003jry.2_5'UTR|PDE4D_uc003jrz.2_Missense_Mutation_p.P101S|PDE4D_uc003jsb.2_Missense_Mutation_p.P104S|PDE4D_uc003jsc.2_Missense_Mutation_p.P101S|PDE4D_uc003jrv.2_Missense_Mutation_p.P35S|PDE4D_uc003jrw.2_Missense_Mutation_p.P43S|PDE4D_uc010iwi.1_5'UTR	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	165					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	GGATCCAAGGGACTCCGTCCC	0.473													5	20					0	0	0.000602	0	0
MAST4	375449	broad.mit.edu	37	5	66460381	66460382	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:66460381_66460382GG>AA	uc003jut.1	+	28	4875_4876	c.4807_4808GG>AA	c.(4807-4809)GGT>AAT	p.G1603N	MAST4_uc003juw.2_Missense_Mutation_p.G1531N|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1795						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TAAGCTGGAAGGTAGGTCTGTC	0.584													39	59					0	0	0.004672	0	0
ZNF366	167465	broad.mit.edu	37	5	71756135	71756135	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:71756135C>T	uc003kce.1	-	2	1375	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	397	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TTGTCGCACTCGGAGCAGTTG	0.592													14	35					0	0	0.004007	0	0
SV2C	22987	broad.mit.edu	37	5	75490882	75490882	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:75490882G>A	uc003kei.1	+	3	853	c.719G>A	c.(718-720)GGT>GAT	p.G240D		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	240	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TTTGTCCAAGGTTATGGCTTC	0.403													90	155					0	0	0.003610	0	0
CMYA5	202333	broad.mit.edu	37	5	79048514	79048514	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:79048514G>A	uc003kgc.2	+	6	11079	c.11007G>A	c.(11005-11007)ATG>ATA	p.M3669I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3669	B-box coiled-coil; BBC.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TTTCTGCAATGGAGAGCACTG	0.378													25	28					0	0	0.005443	0	0
GPR98	84059	broad.mit.edu	37	5	89947487	89947487	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:89947487G>C	uc003kju.2	+	18	3452	c.3356G>C	c.(3355-3357)GGC>GCC	p.G1119A	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1119	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GACCCAAATGGCATTTTTTCT	0.338													10	22					0	0	0.006214	0	0
GPR98	84059	broad.mit.edu	37	5	90124894	90124894	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:90124894C>T	uc003kju.2	+	77	16598	c.16502C>T	c.(16501-16503)TCT>TTT	p.S5501F	GPR98_uc003kjt.2_Missense_Mutation_p.S3207F|GPR98_uc003kjw.2_Missense_Mutation_p.S1162F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5501	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTGTATTTTTCTGTGGGTTCT	0.438													60	110					0	0	0.003610	0	0
ERAP2	64167	broad.mit.edu	37	5	96228051	96228051	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:96228051G>A	uc003kmq.2	+	6	1729	c.1019G>A	c.(1018-1020)GGC>GAC	p.G340D	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.G340D|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.G289D|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	340	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		GAAAATTGGGGCCTCATTACA	0.448													30	38					0	0	0.012213	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101816036	101816036	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:101816036G>A	uc003knn.2	-	2	633	c.461C>T	c.(460-462)TCA>TTA	p.S154L	SLCO6A1_uc003kno.2_Missense_Mutation_p.S154L|SLCO6A1_uc003knp.2_Missense_Mutation_p.S154L|SLCO6A1_uc003knq.2_Missense_Mutation_p.S154L	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	154	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CAGGCCAGATGAAATATCGTA	0.358													23	61					0	0	0.002299	0	0
REEP5	7905	broad.mit.edu	37	5	112222849	112222849	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:112222849C>T	uc003kqe.1	-	4	527	c.383G>A	c.(382-384)AGC>AAC	p.S128N	SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron|REEP5_uc011cvw.1_Missense_Mutation_p.S101N|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_RNA	NM_005669	NP_005660	Q00765	REEP5_HUMAN	receptor accessory protein 5	128						integral to membrane	protein binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		Epithelial(69;1.3e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.26e-08)|all cancers(49;3.56e-07)|Colorectal(14;0.00778)|COAD - Colon adenocarcinoma(37;0.013)		ATTAGAAGGGCTCGGGGCCAT	0.537													17	18					0	0	0.006122	0	0
SRP19	6728	broad.mit.edu	37	5	112228138	112228138	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:112228138G>A	uc011cvv.1	+	4	1132	c.877G>A	c.(877-879)GAA>AAA	p.E293K	SRP19_uc011cvu.1_Missense_Mutation_p.E278K|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		CTGCAATTTGGAACCTCACCT	0.473													45	67					0	0	0.011902	0	0
TRIM36	55521	broad.mit.edu	37	5	114483050	114483050	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:114483050G>A	uc003kqs.2	-	3	849	c.340C>T	c.(340-342)CCT>TCT	p.P114S	TRIM36_uc011cwc.1_Missense_Mutation_p.P102S|TRIM36_uc003kqt.2_5'UTR	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	114						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CCAGGGCAAGGGAAAACAGTT	0.413													27	70					0	0	0.003271	0	0
GRAMD3	65983	broad.mit.edu	37	5	125820190	125820190	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:125820190G>A	uc003ktu.2	+	10	1374	c.944G>A	c.(943-945)GGA>GAA	p.G315E	GRAMD3_uc011cwt.1_Missense_Mutation_p.G330E|GRAMD3_uc011cwv.1_Missense_Mutation_p.G323E|GRAMD3_uc011cww.1_Missense_Mutation_p.G211E|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Missense_Mutation_p.G206E|GRAMD3_uc011cwz.1_Missense_Mutation_p.G299E|GRAMD3_uc011cwu.1_Missense_Mutation_p.G299E	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	315										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		GTACCTGAAGGAAAAGCCAAG	0.453													22	38					0	0	0.002780	0	0
FBN2	2201	broad.mit.edu	37	5	127599332	127599332	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:127599332G>A	uc003kuu.2	-	63	8416	c.7977C>T	c.(7975-7977)TCC>TCT	p.S2659S		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2659	EGF-like 46; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CATTGGGATTGGAGCATTCAT	0.522													18	21					0	0	0.007413	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129015556	129015556	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:129015556G>A	uc003kvb.1	+	17	2588	c.2588G>A	c.(2587-2589)CGA>CAA	p.R863Q	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	863	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TATGTAAGACGAGGCCTCTGG	0.443													23	39					0	0	0.012319	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129030529	129030529	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:129030529G>A	uc003kvb.1	+	19	2917	c.2917G>A	c.(2917-2919)GAG>AAG	p.E973K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	973	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AAAGTGCAATGAGCAACCATG	0.383													31	37					0	0	0.004289	0	0
ACSL6	23305	broad.mit.edu	37	5	131296268	131296268	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:131296268G>A	uc010jdo.1	-	19	1912	c.1829C>T	c.(1828-1830)TCC>TTC	p.S610F	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.S635F|ACSL6_uc003kvy.1_Missense_Mutation_p.S635F|ACSL6_uc003kwb.2_Missense_Mutation_p.S600F|ACSL6_uc003kvz.1_Missense_Mutation_p.S535F|ACSL6_uc003kwa.1_Missense_Mutation_p.S621F|ACSL6_uc003kvw.1_Missense_Mutation_p.S256F|ACSL6_uc010jdn.1_Missense_Mutation_p.S625F	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	610	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTGGGCCCAGGAGGGCATAAC	0.453													18	41					0	0	0.007413	0	0
PHF15	23338	broad.mit.edu	37	5	133909398	133909398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:133909398C>T	uc003kzo.1	+	10	1677	c.1498C>T	c.(1498-1500)CAG>TAG	p.Q500*	PHF15_uc011cxt.1_Nonsense_Mutation_p.Q500*|PHF15_uc003kzk.2_Nonsense_Mutation_p.Q516*|PHF15_uc003kzl.2_Nonsense_Mutation_p.Q500*|PHF15_uc003kzm.2_Nonsense_Mutation_p.Q500*|PHF15_uc003kzn.2_Intron|PHF15_uc003kzp.2_Nonsense_Mutation_p.Q208*	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	500					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTGCAAACTCCAGGAGCAGAT	0.522													27	40					0	0	0.005443	0	0
H2AFY	9555	broad.mit.edu	37	5	134724714	134724714	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:134724714G>A	uc003lam.1	-	2	280	c.70C>T	c.(70-72)CCC>TCC	p.P24S	H2AFY_uc003lao.1_Missense_Mutation_p.P24S|H2AFY_uc003lan.1_Missense_Mutation_p.P24S|H2AFY_uc003lap.1_RNA|H2AFY_uc003laq.1_RNA|H2AFY_uc003lar.1_RNA|H2AFY_uc011cxz.1_Missense_Mutation_p.P24S|H2AFY_uc003las.1_Missense_Mutation_p.P24S|H2AFY_uc003lat.1_Missense_Mutation_p.P24S	NM_138610	NP_613258	O75367	H2AY_HUMAN	H2A histone family, member Y isoform 3	24	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGCCCCACGGGAAAGATGACT	0.612													16	42					0	0	0.004990	0	0
CXXC5	51523	broad.mit.edu	37	5	139060873	139060873	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:139060873C>T	uc010jfg.1	+	2	1055	c.765C>T	c.(763-765)TCC>TCT	p.S255S	CXXC5_uc003let.2_Silent_p.S255S	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	255					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCATCAGCTCCGGCAAGAAGA	0.642													24	56					0	0	0.003330	0	0
NRG2	9542	broad.mit.edu	37	5	139422085	139422085	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:139422085C>T	uc003lex.1	-	1	795	c.570G>A	c.(568-570)AGG>AGA	p.R190R	NRG2_uc003lev.1_Silent_p.R190R|NRG2_uc003lew.1_Silent_p.R190R|NRG2_uc003ley.1_Silent_p.R190R	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	190	Extracellular (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCTGGTTCCTTTCGAGCG	0.597													13	24					0	0	0.001368	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188507	140188507	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140188507G>A	uc003lhi.2	+	1	1836	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E579K|PCDHA4_uc011daa.1_Missense_Mutation_p.E579K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	579	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAGTGAGCGAGCTGGTGCC	0.662													44	45					0	0	0.003610	0	0
PCDHA13	56136	broad.mit.edu	37	5	140264094	140264094	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140264094T>C	uc003lif.2	+	1	2241	c.2241T>C	c.(2239-2241)AGT>AGC	p.S747S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.S747S|PCDHA13_uc003lid.2_Silent_p.S747S	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	747	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCAGGGAGTTGGTCGTACT	0.682													18	41					0	0	0.008871	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474984	140474984	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140474984C>T	uc003lil.2	+	1	748	c.610C>T	c.(610-612)CGC>TGC	p.R204C	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	204	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCCCTGGATCGCGAGGAGCA	0.507													12	16					0	0	0.010729	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567922	140567922	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140567922C>T	uc003liw.1	+	1	1030	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	344	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAATGACAATCCTCCTGAACT	0.378													13	38					0	0	0.004990	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589311	140589311	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140589311T>A	uc003liz.2	+	1	1021	c.832T>A	c.(832-834)TCC>ACC	p.S278T	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	278	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGTGAACTATCCTATACCTT	0.418													52	80					0	0	0.003610	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754080	140754080	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140754080G>A	uc003ljy.1	+	1	430	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.E144K	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	144	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAATTCTCGAAAACGCAGC	0.423													21	31					0	0	0.010504	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774388	140774388	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140774388G>A	uc003lkd.1	+	1	2906	c.2008G>A	c.(2008-2010)GAA>AAA	p.E670K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E670K	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	670	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCATCCCCGAAGTCCTGAC	0.627													15	21					0	0	0.003163	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784331	140784331	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140784331C>T	uc003lkh.1	+	1	1812	c.1812C>T	c.(1810-1812)CTC>CTT	p.L604L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.L604L	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	604	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCTTGGCTCTCCTACCGCC	0.617													41	50					0	0	0.008740	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801345	140801345	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:140801345G>A	uc003lkq.1	+	1	809	c.551G>A	c.(550-552)CGG>CAG	p.R184Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.R184Q|PCDHGA11_uc003lkp.1_Missense_Mutation_p.R184Q	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	184	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGCAACTGCGGGGCAGAACG	0.542													9	14					0	0	0.008291	0	0
HTR4	3360	broad.mit.edu	37	5	147889434	147889434	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:147889434C>T	uc003lpn.2	-	6	825	c.661G>A	c.(661-663)GAG>AAG	p.E221K	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.E221K|HTR4_uc003lpj.1_Missense_Mutation_p.E221K|HTR4_uc003lpk.2_Missense_Mutation_p.E221K|HTR4_uc011dby.1_Missense_Mutation_p.E221K|HTR4_uc003lpl.2_Missense_Mutation_p.E235K|HTR4_uc003lpm.2_Missense_Mutation_p.E221K|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.E221K	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	221	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	TGGGCATGCTCCTTAGCTGTG	0.557													12	28					0	0	0.001855	0	0
SH3TC2	79628	broad.mit.edu	37	5	148420988	148420988	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:148420988G>A	uc003lpu.2	-	6	874	c.722C>T	c.(721-723)CCT>CTT	p.P241L	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Intron|SH3TC2_uc010jgx.2_Missense_Mutation_p.P234L|SH3TC2_uc003lpv.1_Intron|SH3TC2_uc011dbz.1_Missense_Mutation_p.P126L	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	241							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGTGGAAAGGGAGAGGCAG	0.572													9	22					0	0	0.004482	0	0
PDGFRB	5159	broad.mit.edu	37	5	149498406	149498406	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:149498406G>A	uc003lro.2	-	21	3277	c.2808C>T	c.(2806-2808)ATC>ATT	p.I936I	PDGFRB_uc010jhd.2_Silent_p.I775I	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	936	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ACTTCTGCATGATCTCATAGC	0.582			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								22	54					0	0	0.012319	0	0
PDGFRB	5159	broad.mit.edu	37	5	149510178	149510178	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:149510178C>T	uc003lro.2	-	9	1760	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	PDGFRB_uc010jhd.2_Missense_Mutation_p.E270K	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	431	Extracellular (Potential).|Ig-like C2-type 5.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ACTGTCTGTTCCCCACTGTCA	0.602			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML						OREG0016927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	90					0	0	0.003610	0	0
TCOF1	6949	broad.mit.edu	37	5	149755307	149755307	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:149755307C>T	uc003lry.2	+	12	1836	c.1728C>T	c.(1726-1728)CTC>CTT	p.L576L	TCOF1_uc003lrw.2_Silent_p.L576L|TCOF1_uc011dch.1_Silent_p.L576L|TCOF1_uc003lrz.2_Silent_p.L576L|TCOF1_uc003lrx.2_Silent_p.L499L|TCOF1_uc003lsa.2_Silent_p.L499L|TCOF1_uc011dci.1_Silent_p.L65L	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	576					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAACATCCTCCAGGCCAAAC	0.562													58	98					0	0	0.003610	0	0
SYNPO	11346	broad.mit.edu	37	5	150028727	150028727	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:150028727G>A	uc003lsn.2	+	3	1996	c.1622G>A	c.(1621-1623)AGG>AAG	p.R541K	SYNPO_uc003lso.3_Missense_Mutation_p.R297K|SYNPO_uc003lsp.2_Missense_Mutation_p.R297K	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	541					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGGTGGAAAGGAGGATGATG	0.642													10	26					0	0	0.006214	0	0
GRIA1	2890	broad.mit.edu	37	5	153085278	153085278	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:153085278C>T	uc003lva.3	+	11	1839	c.1474C>T	c.(1474-1476)CCC>TCC	p.P492S	GRIA1_uc003luy.3_Missense_Mutation_p.P492S|GRIA1_uc003luz.3_Missense_Mutation_p.P397S|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.P412S|GRIA1_uc011dcx.1_Missense_Mutation_p.P423S|GRIA1_uc011dcy.1_Missense_Mutation_p.P502S|GRIA1_uc011dcz.1_Missense_Mutation_p.P502S|GRIA1_uc010jia.1_Missense_Mutation_p.P472S	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	492	Glutamate binding (By similarity).|Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCTGTGGCTCCCTTAACTAT	0.358													12	20					0	0	0.010729	0	0
GEMIN5	25929	broad.mit.edu	37	5	154282156	154282156	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:154282156G>A	uc003lvx.3	-	20	2892	c.2809C>T	c.(2809-2811)CAG>TAG	p.Q937*	GEMIN5_uc011ddk.1_Nonsense_Mutation_p.Q936*	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	937					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GCTGCAGTCTGGAGAACACCT	0.428													30	49					0	0	0.010818	0	0
ITK	3702	broad.mit.edu	37	5	156665129	156665129	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:156665129G>A	uc003lwo.1	+	9	861	c.779G>A	c.(778-780)GGA>GAA	p.G260E		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	260	SH2.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGCAAAGAAGGAGCCTTCATG	0.478			T	SYK	peripheral T-cell lymphoma								165	281					0	0	0.003610	0	0
DUSP1	1843	broad.mit.edu	37	5	172195795	172195795	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:172195795C>T	uc003mbv.1	-	4	1322	c.1074G>A	c.(1072-1074)CAG>CAA	p.Q358Q	DUSP1_uc011dez.1_Silent_p.Q216Q|DUSP1_uc003mbu.1_Silent_p.Q246Q	NM_004417	NP_004408	P28562	DUS1_HUMAN	dual specificity phosphatase 1	358	Tyrosine-protein phosphatase.				cell cycle|endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|non-membrane spanning protein tyrosine phosphatase activity|protein binding			breast(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00431)|all_lung(126;0.00729)	all_hematologic(541;4.11e-18)|Breast(839;0.00637)|Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.15)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)	GBM - Glioblastoma multiforme(465;0.0103)		TAATGGGGCTCTGAAGGTAGC	0.582													24	58					0	0	0.003330	0	0
STC2	8614	broad.mit.edu	37	5	172755148	172755149	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:172755148_172755149CC>TT	uc003mco.1	-	1	1358_1359	c.48_49GG>AA	c.(46-51)TTGGCC>TTAACC	p.A17T	STC2_uc003mcn.1_5'Flank	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	17					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TCAAAGGTGGCCAACACCAAAG	0.619													29	64					0	0	0.004672	0	0
RMND5B	64777	broad.mit.edu	37	5	177569657	177569657	+	Silent	SNP	G	A	A	rs144820574	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:177569657G>A	uc003mim.2	+	4	393	c.213G>A	c.(211-213)ACG>ACA	p.T71T	RMND5B_uc003min.2_Silent_p.T71T|RMND5B_uc003mio.2_Silent_p.T58T|RMND5B_uc003mip.2_Silent_p.T71T|RMND5B_uc011dgf.1_Silent_p.T71T|RMND5B_uc003miq.2_Silent_p.T11T	NM_022762	NP_073599	Q96G75	RMD5B_HUMAN	required for meiotic nuclear division 5 homolog	71										ovary(1)|skin(1)	2	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCAAAGATACGGTGCAGAAAC	0.572													39	73					0	0	0.006230	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139115	178139115	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:178139115G>A	uc003mjj.2	-	5	1962	c.1764C>T	c.(1762-1764)AAC>AAT	p.N588N		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	588	C2H2-type 13.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		ATGACCTATGGTTGAAAAGTT	0.363													19	36					0	0	0.006122	0	0
BTNL8	79908	broad.mit.edu	37	5	180335759	180335759	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr5:180335759T>A	uc003mmp.2	+	2	457	c.223T>A	c.(223-225)TTT>ATT	p.F75I	BTNL8_uc003mmq.2_Missense_Mutation_p.F75I|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.F75I|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	75	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGACCAGCCATTTATGCAGAT	0.532													81	133					0	0	0.003610	0	0
DUSP22	56940	broad.mit.edu	37	6	311939	311939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:311939G>A	uc003msx.2	+	3	554	c.115G>A	c.(115-117)GAT>AAT	p.D39N	DUSP22_uc011dhn.1_Missense_Mutation_p.D39N|DUSP22_uc003msy.1_5'UTR	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	39					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GTCTGTCCACGATAGTGCCAG	0.493													8	64					0	0	0.003080	0	0
MAK	4117	broad.mit.edu	37	6	10830855	10830855	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:10830855C>G	uc003mzl.2	-	1	256	c.27G>C	c.(25-27)CAG>CAC	p.Q9H	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.Q9H|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	9	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				CGTCCCCCAACTGTCTCATGG	0.443													62	65					0	0	0.003610	0	0
CCDC90A	63933	broad.mit.edu	37	6	13801538	13801539	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:13801538_13801539GG>AA	uc003nbd.2	-	4	850_851	c.722_723CC>TT	c.(721-723)GCC>GTT	p.A241V	CCDC90A_uc010jpf.2_RNA	NM_001031713	NP_001026883	Q96AQ8	CC90A_HUMAN	coiled-coil domain containing 90A precursor	241	Potential.					integral to membrane|mitochondrion					0	Breast(50;0.0027)|Ovarian(93;0.0964)	all_hematologic(90;0.117)				CTGCTCTGAGGGCTGAAAATTC	0.282													32	151					0	0	0.004672	0	0
JARID2	3720	broad.mit.edu	37	6	15497063	15497063	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:15497063C>T	uc003nbj.2	+	7	1851	c.1607C>T	c.(1606-1608)CCG>CTG	p.P536L	JARID2_uc011diu.1_Missense_Mutation_p.P400L|JARID2_uc011div.1_Missense_Mutation_p.P364L|JARID2_uc011diw.1_Missense_Mutation_p.P498L	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	536					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				GTGCACAAGCCGCAGGACTCG	0.667													10	10					0	0	0.008291	0	0
SLC17A3	10786	broad.mit.edu	37	6	25849654	25849654	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:25849654G>A	uc003nfi.3	-	10	1186	c.1076C>T	c.(1075-1077)TCG>TTG	p.S359L	SLC17A3_uc003nfk.3_Missense_Mutation_p.S437L	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	359	Helical; (Potential).				glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						TGCTATGCTCGAAAATCCTCT	0.443													9	12					0	0	0.006214	0	0
HIST1H2AE	3012	broad.mit.edu	37	6	26217325	26217325	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:26217325C>T	uc003nha.1	+	1	178	c.123C>T	c.(121-123)TCC>TCT	p.S41S	HIST1H2BG_uc003ngz.2_5'Flank	NM_021052	NP_066390	P04908	H2A1B_HUMAN	histone cluster 1, H2ae	41					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2		all_hematologic(11;0.196)				GCAACTACTCCGAACGAGTCG	0.607													38	38					0	0	0.005524	0	0
GPX6	257202	broad.mit.edu	37	6	28472125	28472125	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:28472125C>T	uc011dlj.1	-	6	660	c.610G>A	c.(610-612)GTC>ATC	p.V204I	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	204					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	ACTGTGCTGACTGGAGCCTGG	0.522													49	53					0	0	0.003610	0	0
TRIM26	7726	broad.mit.edu	37	6	30166464	30166464	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:30166464C>T	uc003npr.2	-	3	626	c.417G>A	c.(415-417)GAG>GAA	p.E139E	TRIM26_uc003nps.2_Silent_p.E139E|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Silent_p.E139E|TRIM26_uc003npu.1_Silent_p.E139E	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	139							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						GGGCGGCCTTCTCCATGAGGA	0.642													7	30					0	0	0.004482	0	0
BAT2	7916	broad.mit.edu	37	6	31602309	31602309	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:31602309C>T	uc003nvb.3	+	20	5159	c.4910C>T	c.(4909-4911)CCT>CTT	p.P1637L	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P1637L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1637	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CCCCTGAGTCCTTTTGAGGAT	0.572													8	13					0	0	0.003080	0	0
C6orf25	80739	broad.mit.edu	37	6	31691441	31691441	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:31691441C>T	uc011doc.1	+	2	87	c.87C>T	c.(85-87)GAC>GAT	p.D29D	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Silent_p.D29D|C6orf25_uc011dod.1_Silent_p.D29D|C6orf25_uc011doe.1_Silent_p.D29D|C6orf25_uc003nwo.2_Silent_p.D29D|C6orf25_uc003nwn.2_Silent_p.D29D	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	29	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						GCCCTGGGGACCGGGTGAATC	0.657													63	96					0	0	0.003610	0	0
CLIC1	1192	broad.mit.edu	37	6	31700000	31700000	+	Silent	SNP	T	A	A	rs141018232		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:31700000T>A	uc003nwr.2	-	5	822	c.558A>T	c.(556-558)ATA>ATT	p.I186I	DDAH2_uc003nwp.2_5'Flank|DDAH2_uc003nwq.2_5'Flank|CLIC1_uc003rje.2_Silent_p.I186I	NM_001288	NP_001279	O00299	CLIC1_HUMAN	chloride intracellular channel 1	186	GST C-terminal.				signal transduction	brush border|chloride channel complex|cytoplasm|membrane fraction|nuclear membrane|plasma membrane|soluble fraction	protein binding|voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						ACACCTGTACTATGTGTAACT	0.512													265	198					0	0	0.003610	0	0
CYP21A2	1589	broad.mit.edu	37	6	32007017	32007017	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:32007017T>C	uc003nze.1	+	3	557	c.439T>C	c.(439-441)TTC>CTC	p.F147L	CYP21A2_uc003nzf.1_Missense_Mutation_p.F117L	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	146					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						GACCCAGGAGTTCTGTGAGGT	0.657													70	247					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32023901	32023901	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:32023901C>T	uc003nzl.2	-	24	8396	c.8194G>A	c.(8194-8196)GAG>AAG	p.E2732K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2790					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCAGGGGGCTCCGGGGCCTCA	0.642													137	385					0	0	0.003610	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32902752	32902752	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:32902752G>A	uc003ocl.1	-	6	1021	c.788C>T	c.(787-789)TCC>TTC	p.S263F	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_RNA|HLA-DMB_uc010jud.1_Missense_Mutation_p.S120F|HLA-DMB_uc010jue.1_Missense_Mutation_p.S93F|HLA-DMB_uc010juf.1_Missense_Mutation_p.S81F	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	263	Cytoplasmic (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						CTGCCTCTAGGAAATGTGCCA	0.438													29	15					0	0	0.010818	0	0
C6orf126	389383	broad.mit.edu	37	6	35747191	35747191	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:35747191G>A	uc010jvz.1	+	3	271	c.267G>A	c.(265-267)AAG>AAA	p.K89K	C6orf126_uc003olc.1_Missense_Mutation_p.G116R|C6orf127_uc003old.3_5'Flank	NM_207409	NP_997292	Q6UWE3	CF126_HUMAN	hypothetical protein LOC389383 precursor	89					digestion|lipid catabolic process	extracellular region	enzyme activator activity				0						GCATATCCAAGGACTTGATGT	0.567													5	7					0	0	0.000602	0	0
KCTD20	222658	broad.mit.edu	37	6	36454878	36454878	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:36454878C>T	uc003ome.2	+	8	1577	c.1186C>T	c.(1186-1188)CCA>TCA	p.P396S	KCTD20_uc011dtm.1_Missense_Mutation_p.P251S|KCTD20_uc011dtn.1_Missense_Mutation_p.P150S|KCTD20_uc010jwk.2_Missense_Mutation_p.P230S|KCTD20_uc011dto.1_Missense_Mutation_p.P150S	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	396						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						AATGCATCACCCACCCCAAGT	0.498													67	178					0	0	0.003610	0	0
FGD2	221472	broad.mit.edu	37	6	36978766	36978766	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:36978766C>T	uc010jwp.1	+	3	489	c.318C>T	c.(316-318)ATC>ATT	p.I106I	FGD2_uc011dtu.1_Silent_p.I106I|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	106	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGAAGAAGATCGTCCAGGAGC	0.612													17	66					0	0	0.008871	0	0
FGD2	221472	broad.mit.edu	37	6	36995938	36995938	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:36995938G>A	uc010jwp.1	+	16	2138	c.1967G>A	c.(1966-1968)TGA>TAA	p.*656*	FGD2_uc003ong.2_Silent_p.*378*|FGD2_uc011dtv.1_Silent_p.*284*|FGD2_uc003onj.1_3'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	656					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CTGTCCGACTGAGCCACTGCC	0.692													12	13					0	0	0.001368	0	0
MDGA1	266727	broad.mit.edu	37	6	37612346	37612346	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:37612346C>T	uc003onu.1	-	13	3507	c.2328G>A	c.(2326-2328)CAG>CAA	p.Q776Q	MDGA1_uc003onv.1_Silent_p.Q45Q	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	776	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						TGAGGGCATTCTGCCGCGTCC	0.567													11	26					0	0	0.001368	0	0
DNAH8	1769	broad.mit.edu	37	6	38771046	38771046	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:38771046T>C	uc003ooe.1	+	20	2942	c.2342T>C	c.(2341-2343)ATT>ACT	p.I781T		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTGAGCAGATTTATGAAGTG	0.333													11	39					0	0	0.008291	0	0
KIF6	221458	broad.mit.edu	37	6	39507938	39507938	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:39507938C>T	uc003oot.2	-	13	1581	c.1486G>A	c.(1486-1488)GCT>ACT	p.A496T	KIF6_uc010jwz.1_5'UTR|KIF6_uc010jxa.1_Missense_Mutation_p.A287T|KIF6_uc011dua.1_Missense_Mutation_p.A496T|KIF6_uc010jxb.1_Intron	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	496					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TCCATGCCAGCCAAGTGGAGA	0.463													47	168					0	0	0.003610	0	0
TFEB	7942	broad.mit.edu	37	6	41658526	41658526	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:41658526G>A	uc003oqs.1	-	4	645	c.343C>T	c.(343-345)CCG>TCG	p.P115S	TFEB_uc003oqt.1_Missense_Mutation_p.P115S|TFEB_uc003oqu.1_Missense_Mutation_p.P129S|TFEB_uc003oqv.1_Missense_Mutation_p.P115S|TFEB_uc010jxo.1_Missense_Mutation_p.P115S|TFEB_uc003oqx.1_Missense_Mutation_p.P115S|TFEB_uc003oqr.1_Intron|TFEB_uc003oqw.1_Missense_Mutation_p.P115S	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	115				GSPKPPPAASPGVRAGHVLSSSAGNSAPN -> ALRNPHQP PPQGCELDTCCPPPLATVLPI (in Ref. 1; AAA36730).	embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			GGGGGTTTCGGAGAGCCCTGG	0.632			T	ALPHA	renal (childhood epithelioid)								26	31					0	0	0.008361	0	0
TDRD6	221400	broad.mit.edu	37	6	46660228	46660228	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:46660228C>T	uc003oyj.2	+	1	4363	c.4363C>T	c.(4363-4365)CAA>TAA	p.Q1455*	TDRD6_uc010jze.2_Nonsense_Mutation_p.Q1449*	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1455				Q -> R (in Ref. 3; CAI45997).	cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TGTTAAATTTCAAGACAGATG	0.373													25	113					0	0	0.006320	0	0
FAM83B	222584	broad.mit.edu	37	6	54804859	54804859	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:54804859C>T	uc003pck.2	+	5	1206	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	364										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TCATTTTGTTCCTAACTTTAA	0.343													53	30					0	0	0.003610	0	0
BMP5	653	broad.mit.edu	37	6	55684473	55684473	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:55684473G>A	uc003pcq.2	-	2	1375	c.663C>T	c.(661-663)ATC>ATT	p.I221I	BMP5_uc011dxf.1_Silent_p.I221I	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	221					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATTCCTTGATGATTTGATATA	0.328													40	26					0	0	0.006999	0	0
COL19A1	1310	broad.mit.edu	37	6	70894800	70894800	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:70894800G>A	uc003pfc.1	+	46	2966	c.2849G>A	c.(2848-2850)GGA>GAA	p.G950E		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	950	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GGCCCCAAAGGAGAACGTGTA	0.403													10	7					0	0	0.010729	0	0
FAM135A	57579	broad.mit.edu	37	6	71191749	71191749	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:71191749C>T	uc003pfj.2	+	8	848	c.715C>T	c.(715-717)CGT>TGT	p.R239C	FAM135A_uc003pfi.2_Missense_Mutation_p.R239C|FAM135A_uc003pfh.2_Missense_Mutation_p.R196C|FAM135A_uc003pfk.2_Missense_Mutation_p.R239C|FAM135A_uc003pfl.2_Missense_Mutation_p.R76C|FAM135A_uc003pfm.1_5'UTR	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	239										central_nervous_system(1)	1						TCATGCGTATCGTTTTCATTA	0.388													34	15					0	0	0.004289	0	0
UBE2CBP	90025	broad.mit.edu	37	6	83728796	83728796	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:83728796G>A	uc003pjp.2	-	8	1014	c.906C>T	c.(904-906)ATC>ATT	p.I302I	UBE2CBP_uc011dyx.1_RNA|UBE2CBP_uc003pjq.2_Silent_p.I92I	NM_198920	NP_944602	Q7Z6J8	UB2CB_HUMAN	ubiquitin-conjugating enzyme E2C binding	302						cytoplasm	ligase activity			ovary(1)	1		all_cancers(76;0.000374)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0548)		BRCA - Breast invasive adenocarcinoma(397;0.0944)		GGAATTTTTTGATATATTTGG	0.378													10	8					0	0	0.010729	0	0
ROS1	6098	broad.mit.edu	37	6	117709094	117709094	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:117709094T>C	uc003pxp.1	-	13	2062	c.1863A>G	c.(1861-1863)GAA>GAG	p.E621E	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	621	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TATGAGTGACTTCAGGAGGGT	0.433			T	GOPC|ROS1	glioblastoma|NSCLC								44	17					0	0	0.003610	0	0
CLVS2	134829	broad.mit.edu	37	6	123369860	123369860	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:123369860G>A	uc003pzi.1	+	4	1527	c.658G>A	c.(658-660)GAG>AAG	p.E220K		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	220	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TTTCCTGAAGGAGAAAACTCG	0.388													58	36					0	0	0.003610	0	0
RSPO3	84870	broad.mit.edu	37	6	127517111	127517111	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:127517111C>T	uc003qar.2	+	5	1068	c.778C>T	c.(778-780)CAA>TAA	p.Q260*	RSPO3_uc003qas.1_Nonsense_Mutation_p.Q260*	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	260						extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		GCGAAAAGTCCAAGATAAACA	0.413													21	15					0	0	0.002299	0	0
THEMIS	387357	broad.mit.edu	37	6	128134289	128134289	+	Silent	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:128134289C>A	uc003qbi.2	-	5	1816	c.1497G>T	c.(1495-1497)ACG>ACT	p.T499T	THEMIS_uc010kfa.2_Silent_p.T402T|THEMIS_uc011ebt.1_Silent_p.T499T|THEMIS_uc010kfb.2_Silent_p.T464T	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	499	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CCCAGCACTCCGTGGGGTTGG	0.478													17	13					5.01169e-05	5.35669e-05	0.004990	1	0
GPR126	57211	broad.mit.edu	37	6	142725021	142725021	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:142725021G>A	uc010khc.2	+	14	2449	c.2038G>A	c.(2038-2040)GCT>ACT	p.A680T	GPR126_uc010khd.2_Missense_Mutation_p.A652T|GPR126_uc010khe.2_Missense_Mutation_p.A680T|GPR126_uc010khf.2_Missense_Mutation_p.A652T	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	680	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		TCGGAACTTGGCTCTCAGCGT	0.368													21	19					0	0	0.010504	0	0
UTRN	7402	broad.mit.edu	37	6	144820410	144820410	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:144820410G>A	uc003qkt.2	+	33	4703	c.4611G>A	c.(4609-4611)CAG>CAA	p.Q1537Q		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1537	Spectrin 10.|Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AAGGAAAACAGGATCTGGAAA	0.438													22	13					0	0	0.004656	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151161774	151161774	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr6:151161774G>A	uc003qny.1	+	17	4212	c.3900G>A	c.(3898-3900)AGG>AGA	p.R1300R	PLEKHG1_uc011eem.1_Silent_p.R1359R	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	1300					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		ATCGTAGAAGGAAATCTGACT	0.423													13	7					0	0	0.001855	0	0
DNAH11	8701	broad.mit.edu	37	7	21695568	21695568	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:21695568C>A	uc003svc.2	+	29	5109	c.5078C>A	c.(5077-5079)CCA>CAA	p.P1693Q		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1693	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GAGTATGTCCCATTCCAAGCC	0.428									Kartagener_syndrome				18	50					8.34094e-07	8.94158e-07	0.008871	1	0
C7orf31	136895	broad.mit.edu	37	7	25181885	25181885	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:25181885C>T	uc003sxn.1	-	9	1487	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	C7orf31_uc003sxm.1_Missense_Mutation_p.R151Q	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	309											0						TCCTATCTTTCGTGTTAACTC	0.448													46	56					0	0	0.003610	0	0
CREB5	9586	broad.mit.edu	37	7	28758481	28758481	+	Silent	SNP	C	T	T	rs150680376	byFrequency	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:28758481C>T	uc003szq.2	+	6	966	c.576C>T	c.(574-576)TCC>TCT	p.S192S	CREB5_uc003szo.2_Silent_p.S159S|CREB5_uc003szr.2_Silent_p.S185S|CREB5_uc003szs.2_Silent_p.S53S|CREB5_uc011jzr.1_Silent_p.S41S	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	192					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.S192S(1)|p.S192F(1)		skin(2)	2						CAGGATCTTCCGCCGTCTTGA	0.517													249	365					0	0	0.003610	0	0
PDE1C	5137	broad.mit.edu	37	7	31867923	31867923	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:31867923A>T	uc003tcm.1	-	12	1737	c.1268T>A	c.(1267-1269)GTT>GAT	p.V423D	PDE1C_uc003tcn.1_Missense_Mutation_p.V423D|PDE1C_uc003tco.1_Missense_Mutation_p.V483D|PDE1C_uc003tcr.2_Missense_Mutation_p.V423D|PDE1C_uc003tcs.2_Missense_Mutation_p.V423D	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	423	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGACTGAGCAACCATAGTGGA	0.458													21	54					0	0	0.003330	0	0
POU6F2	11281	broad.mit.edu	37	7	39472825	39472825	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:39472825C>T	uc003thb.1	+	7	1218	c.1176C>T	c.(1174-1176)ATC>ATT	p.I392I		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	392	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GGAACCAGATCCTGCCCGTGA	0.607													52	66					0	0	0.003610	0	0
DBNL	28988	broad.mit.edu	37	7	44100395	44100395	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:44100395C>T	uc003tjp.3	+	13	1271	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	DBNL_uc003tjo.3_Silent_p.S392S|DBNL_uc003tjr.3_Silent_p.S264S|DBNL_uc003tjq.3_Silent_p.S400S|DBNL_uc011kbm.1_Silent_p.S367S|DBNL_uc011kbn.1_Silent_p.S288S|DBNL_uc011kbo.1_Silent_p.S292S|DBNL_uc011kbp.1_Silent_p.S343S|DBNL_uc011kbq.1_Silent_p.S316S|DBNL_uc011kbr.1_Silent_p.S340S|DBNL_uc011kbs.1_Silent_p.S296S	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	391	SH3.				activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						CAGAGATCTCCTTTGACCCCG	0.617													39	70					0	0	0.007835	0	0
AEBP1	165	broad.mit.edu	37	7	44152207	44152207	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:44152207C>T	uc003tkb.2	+	18	2573	c.2268C>T	c.(2266-2268)TTC>TTT	p.F756F	AEBP1_uc003tkc.3_Silent_p.F331F|AEBP1_uc003tkd.2_Silent_p.F6F	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	756	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAACCCCTTCGTGCTGGGAG	0.642													27	57					0	0	0.009535	0	0
POM121L12	285877	broad.mit.edu	37	7	53103599	53103599	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:53103599G>A	uc003tpz.2	+	1	251	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	79											0						CCACCTCATCGAGGTGCGGCC	0.711													26	33					0	0	0.003954	0	0
LOC442308	442308	broad.mit.edu	37	7	55714192	55714192	+	RNA	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:55714192C>T	uc010kzj.2	+	1		c.881C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						AGCAGGTCTTCGATGCCAAAA	0.542													18	31					0	0	0.004990	0	0
CCT6A	908	broad.mit.edu	37	7	56122096	56122097	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:56122096_56122097AG>TA	uc003trl.1	+	3	400_401	c.236_237AG>TA	c.(235-237)AAG>ATA	p.K79I	PSPH_uc003trh.2_5'Flank|PSPH_uc003tri.2_5'Flank|PSPH_uc003trj.2_Intron|PSPH_uc003trk.1_5'Flank|CCT6A_uc003trm.1_Intron|CCT6A_uc011kcu.1_Missense_Mutation_p.K48I	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	79					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTAATAGCAAAGGTAGCAACAG	0.386													77	150					0	0	0.004672	0	0
ZNF716	441234	broad.mit.edu	37	7	57529081	57529081	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:57529081T>A	uc011kdi.1	+	4	1026	c.914T>A	c.(913-915)TTT>TAT	p.F305Y		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						GGCAAAGCCTTTAGCCGCTCT	0.428													30	35					0	0	0.006320	0	0
ZNF735	730291	broad.mit.edu	37	7	63680395	63680395	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:63680395G>A	uc011kdn.1	+	4	966	c.966G>A	c.(964-966)GAG>GAA	p.E322E		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATACTGGAGAGAAACCCTACA	0.423													28	40					0	0	0.010818	0	0
Unknown	0	broad.mit.edu	37	7	64525411	64525412	+	RNA	DNP	AG	TA	TA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:64525411_64525412AG>TA	uc003ttt.1	+	2		c.247_248AG>TA			uc010kzt.1_RNA					Homo sapiens cDNA clone IMAGE:4215179, partial cds.																		TTAATAGCAAAGGTAGCAACAG	0.381													6	175					0	0	0.004672	0	0
FGL2	10875	broad.mit.edu	37	7	76828636	76828636	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:76828636C>T	uc003ugb.2	-	1	515	c.475G>A	c.(475-477)GAG>AAG	p.E159K	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	159	Potential.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TTCAGCTTCTCCAGGCGACCA	0.378													54	53					0	0	0.003610	0	0
PION	54103	broad.mit.edu	37	7	76942807	76942807	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:76942807G>A	uc003ugf.2	-	28	2348	c.2269C>T	c.(2269-2271)CCG>TCG	p.P757S	PION_uc011kgo.1_Missense_Mutation_p.P78S|PION_uc003ugd.2_Missense_Mutation_p.P151S	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	757					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						AGTATTACCGGAGGAAGCCGC	0.348													9	12					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82582812	82582812	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:82582812A>G	uc003uhx.2	-	5	7746	c.7457T>C	c.(7456-7458)GTT>GCT	p.V2486A	PCLO_uc003uhv.2_Missense_Mutation_p.V2486A|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2417	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTAGGAGGAACAGGAGGAGG	0.463													45	69					0	0	0.011902	0	0
PCLO	27445	broad.mit.edu	37	7	82584810	82584810	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:82584810C>T	uc003uhx.2	-	5	5748	c.5459G>A	c.(5458-5460)AGG>AAG	p.R1820K	PCLO_uc003uhv.2_Missense_Mutation_p.R1820K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1751					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGCCTTTCCCTTCTTCTCTG	0.428													135	170					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82585057	82585057	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:82585057C>T	uc003uhx.2	-	5	5501	c.5212G>A	c.(5212-5214)GAT>AAT	p.D1738N	PCLO_uc003uhv.2_Missense_Mutation_p.D1738N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1669					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGTCCTCATCAAGTGATGAT	0.502													105	145					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82585408	82585408	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:82585408C>T	uc003uhx.2	-	5	5150	c.4861G>A	c.(4861-4863)GAA>AAA	p.E1621K	PCLO_uc003uhv.2_Missense_Mutation_p.E1621K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1552					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCTGCATCTTCATCAATGCTT	0.413													222	320					0	0	0.003610	0	0
SEMA3A	10371	broad.mit.edu	37	7	83640346	83640346	+	Silent	SNP	C	T	T	rs139214465		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:83640346C>T	uc003uhz.2	-	9	1302	c.987G>A	c.(985-987)ACG>ACA	p.T329T		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	329	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ACCTGGAAGTCGTAAACACTC	0.294													24	46					0	0	0.003330	0	0
AKAP9	10142	broad.mit.edu	37	7	91715658	91715658	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:91715658G>A	uc003ulg.2	+	37	9366	c.9141G>A	c.(9139-9141)ACG>ACA	p.T3047T	AKAP9_uc003ulf.2_Silent_p.T3039T|AKAP9_uc003uli.2_Silent_p.T2670T|AKAP9_uc003ulj.2_Silent_p.T817T|AKAP9_uc003ulk.2_Silent_p.T322T	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3051					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CATTTCGGACGGAGCTGACAG	0.408			T	BRAF	papillary thyroid								153	257					0	0	0.003610	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762825	92762825	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:92762825G>A	uc003umh.1	-	5	3676	c.2460C>T	c.(2458-2460)TCC>TCT	p.S820S	SAMD9L_uc003umj.1_Silent_p.S820S|SAMD9L_uc003umi.1_Silent_p.S820S|SAMD9L_uc010lfb.1_Silent_p.S820S|SAMD9L_uc003umk.1_Silent_p.S820S|SAMD9L_uc010lfc.1_Silent_p.S820S|SAMD9L_uc010lfd.1_Silent_p.S820S|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	820										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGCTAAAACGGAATGGATGG	0.378													55	59					0	0	0.003610	0	0
PEG10	23089	broad.mit.edu	37	7	94293046	94293046	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:94293046G>A	uc011kie.1	+	2	623	c.406G>A	c.(406-408)GAG>AAG	p.E136K		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	60					apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			TGATGACATCGAGCTCCGCGG	0.582													13	15					0	0	0.001368	0	0
SLC25A13	10165	broad.mit.edu	37	7	95761084	95761084	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:95761084C>T	uc003uof.3	-	15	1753	c.1562G>A	c.(1561-1563)GGA>GAA	p.G521E	SLC25A13_uc003uog.3_Missense_Mutation_p.G522E|SLC25A13_uc011kik.1_Missense_Mutation_p.G413E	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	521	Solcar 3.				ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	GAGCAGGCTTCCTGGGCTAAC	0.542													37	37					0	0	0.003755	0	0
ZKSCAN1	7586	broad.mit.edu	37	7	99621898	99621898	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:99621898C>T	uc003usk.1	+	3	767	c.548C>T	c.(547-549)TCG>TTG	p.S183L	ZKSCAN1_uc003usj.2_Missense_Mutation_p.S182L|ZKSCAN1_uc003usl.1_Missense_Mutation_p.S147L|ZKSCAN1_uc003usm.1_Intron	NM_003439	NP_003430	P17029	ZKSC1_HUMAN	zinc finger protein 36	183					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TTCAAACATTCGTCTCGGAAA	0.532													36	43					0	0	0.005524	0	0
ZAN	7455	broad.mit.edu	37	7	100348407	100348407	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:100348407G>A	uc003uwj.2	+	12	1574	c.1409G>A	c.(1408-1410)GGA>GAA	p.G470E	ZAN_uc003uwk.2_Missense_Mutation_p.G470E|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	470	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CTCCTCCTGGGAAGTCCTGCG	0.622													21	13					0	0	0.010504	0	0
ZAN	7455	broad.mit.edu	37	7	100349677	100349677	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:100349677C>T	uc003uwj.2	+	14	2114	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F	ZAN_uc003uwk.2_Missense_Mutation_p.S650F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	650	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCCACCATTTCCACAGAAAAA	0.522													48	70					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100678076	100678076	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:100678076G>A	uc003uxp.1	+	3	3432	c.3379G>A	c.(3379-3381)GAC>AAC	p.D1127N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1127	Extracellular (Potential).|59 X approximate tandem repeats.|17.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTGTCGACACCAGCAT	0.517													355	419					0	0	0.003610	0	0
PIK3CG	5294	broad.mit.edu	37	7	106508121	106508121	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:106508121C>T	uc003vdv.3	+	2	200	c.115C>T	c.(115-117)CCC>TCC	p.P39S	PIK3CG_uc003vdu.2_Missense_Mutation_p.P39S|PIK3CG_uc003vdw.2_Missense_Mutation_p.P39S	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	39					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GGAGCTCATCCCCATCGAGTT	0.647													41	61					0	0	0.006999	0	0
PIK3CG	5294	broad.mit.edu	37	7	106526703	106526703	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:106526703G>A	uc003vdv.3	+	10	3081	c.2996G>A	c.(2995-2997)GGA>GAA	p.G999E	PIK3CG_uc003vdu.2_Missense_Mutation_p.G999E|PIK3CG_uc003vdw.2_Missense_Mutation_p.G999E	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	999	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GGAACTTCTGGAAAGAAGACA	0.478													35	57					0	0	0.006999	0	0
LAMB4	22798	broad.mit.edu	37	7	107717458	107717458	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:107717458G>A	uc010ljo.1	-	17	2139	c.2055C>T	c.(2053-2055)TCC>TCT	p.S685S	LAMB4_uc003vey.2_Silent_p.S685S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	685	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AGACATCTATGGAATATTGTA	0.398													41	46					0	0	0.008740	0	0
SPAM1	6677	broad.mit.edu	37	7	123595117	123595117	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:123595117A>G	uc003vld.2	+	5	1423	c.1021A>G	c.(1021-1023)ACC>GCC	p.T341A	SPAM1_uc003vle.2_Missense_Mutation_p.T341A|SPAM1_uc011koa.1_5'UTR|SPAM1_uc003vlf.3_Missense_Mutation_p.T341A|SPAM1_uc010lku.2_Missense_Mutation_p.T341A	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	341					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	AATATGGGGAACCCTCAGTAT	0.318													63	94					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128487821	128487821	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:128487821G>A	uc003vnz.3	+	25	4568	c.4359G>A	c.(4357-4359)CTG>CTA	p.L1453L	FLNC_uc003voa.3_Silent_p.L1453L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1453	Filamin 13.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGCCAGGGCTGGGGGCTGGTG	0.657													50	68					0	0	0.003610	0	0
TNPO3	23534	broad.mit.edu	37	7	128645162	128645162	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:128645162A>T	uc003vol.1	-	5	978	c.604T>A	c.(604-606)TTT>ATT	p.F202I	TNPO3_uc003vom.1_Missense_Mutation_p.F136I|TNPO3_uc010lly.1_Missense_Mutation_p.F202I|TNPO3_uc010llz.1_Missense_Mutation_p.F202I	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	202					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						AAACAGCGAAAAACCTTCATA	0.318													48	62					0	0	0.003610	0	0
SVOPL	136306	broad.mit.edu	37	7	138305795	138305795	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:138305795G>A	uc011kqh.1	-	13	1349	c.1349C>T	c.(1348-1350)TCC>TTC	p.S450F	SVOPL_uc003vue.2_Missense_Mutation_p.S298F	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	450						integral to membrane	transmembrane transporter activity				0						CTGTACCTGGGATATAAATGG	0.572													8	38					0	0	0.006122	0	0
SVOPL	136306	broad.mit.edu	37	7	138312121	138312121	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:138312121G>T	uc011kqh.1	-	11	1155	c.1155C>A	c.(1153-1155)TTC>TTA	p.F385L	SVOPL_uc003vue.2_Missense_Mutation_p.F233L	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	385	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						TGAGGAGAAGGAAGAATAAAG	0.413													17	21					5.03518e-11	5.41789e-11	0.007413	1	0
KIAA1549	57670	broad.mit.edu	37	7	138529097	138529097	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:138529097G>A	uc011kql.1	-	18	5466	c.5417C>T	c.(5416-5418)TCG>TTG	p.S1806L	KIAA1549_uc011kqi.1_Missense_Mutation_p.S590L|KIAA1549_uc003vuk.3_Missense_Mutation_p.S1756L|KIAA1549_uc011kqj.1_Missense_Mutation_p.S1806L|KIAA1549_uc011kqk.1_Missense_Mutation_p.S590L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1806						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCGGGCCACCGACGGCATCTC	0.572			O	BRAF	pilocytic astrocytoma								31	32					0	0	0.003755	0	0
KIAA1549	57670	broad.mit.edu	37	7	138529099	138529099	+	Silent	SNP	C	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:138529099C>A	uc011kql.1	-	18	5464	c.5415G>T	c.(5413-5415)CCG>CCT	p.P1805P	KIAA1549_uc011kqi.1_Silent_p.P589P|KIAA1549_uc003vuk.3_Silent_p.P1755P|KIAA1549_uc011kqj.1_Silent_p.P1805P|KIAA1549_uc011kqk.1_Silent_p.P589P	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1805						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGGCCACCGACGGCATCTCCT	0.577			O	BRAF	pilocytic astrocytoma								30	31					8.53417e-09	9.16916e-09	0.002836	1	0
KIAA1549	57670	broad.mit.edu	37	7	138603041	138603041	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:138603041G>A	uc011kql.1	-	2	1380	c.1331C>T	c.(1330-1332)TCA>TTA	p.S444L	KIAA1549_uc003vuk.3_Missense_Mutation_p.S394L|KIAA1549_uc011kqj.1_Missense_Mutation_p.S444L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	444						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ACCATCCCCTGATCCCACGTC	0.537			O	BRAF	pilocytic astrocytoma								53	102					0	0	0.003610	0	0
RAB19	401409	broad.mit.edu	37	7	140125765	140125765	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:140125765G>A	uc010lni.2	+	4	667	c.469G>A	c.(469-471)GTT>ATT	p.V157I	RAB19_uc011krc.1_Missense_Mutation_p.V157I	NM_001008749	NP_001008749	A4D1S5	RAB19_HUMAN	RAB19, member RAS oncogene family	157					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0	Melanoma(164;0.0142)					CCTCCTGGCCGTTTTGGAGAC	0.522													95	121					0	0	0.003610	0	0
DENND2A	27147	broad.mit.edu	37	7	140301517	140301517	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:140301517G>A	uc010lnj.2	-	1	826	c.681C>T	c.(679-681)CCC>CCT	p.P227P	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Silent_p.P227P|DENND2A_uc003vvw.2_Silent_p.P227P|DENND2A_uc003vvx.2_Silent_p.P227P	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	227										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					GCTCAGGGGTGGGCTCCCTGC	0.637													94	164					0	0	0.003610	0	0
OR2A12	346525	broad.mit.edu	37	7	143792932	143792932	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:143792932C>T	uc011kty.1	+	1	732	c.732C>T	c.(730-732)CTC>CTT	p.L244L		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					CCTCCCACCTCTGCGTGGTGG	0.562													128	158					0	0	0.003610	0	0
NOBOX	135935	broad.mit.edu	37	7	144098436	144098436	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:144098436C>T	uc011kue.1	-	4	547	c.547G>A	c.(547-549)GAA>AAA	p.E183K		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	183					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GAACAATCTTCCCCCTGAGTC	0.627													12	23					0	0	0.002450	0	0
PDIA4	9601	broad.mit.edu	37	7	148716090	148716091	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:148716090_148716091GG>AA	uc003wff.2	-	3	750_751	c.468_469CC>TT	c.(466-471)ACCCAG>ACTTAG	p.Q157*		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	157	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			TCACCTTCCTGGGTTCTGGAGC	0.55													20	36					0	0	0.004672	0	0
KRBA1	84626	broad.mit.edu	37	7	149428761	149428761	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:149428761G>A	uc003wfz.2	+	17	2546	c.2147_splice	c.e17-1	p.G716_splice	KRBA1_uc010lpj.2_Splice_Site|KRBA1_uc003wga.2_Splice_Site|KRBA1_uc003wgb.2_Splice_Site_p.G323_splice	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1											ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TCTTTCTATAGGTACAGCTCA	0.502													7	11					0	0	0.001984	0	0
SSPO	23145	broad.mit.edu	37	7	149502521	149502521	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:149502521G>A	uc010lpk.2	+	58	8334	c.8334G>A	c.(8332-8334)TGG>TGA	p.W2778*		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2778	TSP type-1 7.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGACGCCCTGGACTTCCTGGT	0.662													33	42					0	0	0.007835	0	0
SSPO	23145	broad.mit.edu	37	7	149513089	149513089	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:149513089G>A	uc010lpk.2	+	78	10992	c.10992G>A	c.(10990-10992)GGG>GGA	p.G3664G		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3664	TSP type-1 15.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGGGGGCGGGGAGCAGCTGC	0.687													7	2					0	0	0.001984	0	0
LRRC61	65999	broad.mit.edu	37	7	150034461	150034461	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:150034461G>T	uc003wgv.2	+	3	1185	c.511G>T	c.(511-513)GAG>TAG	p.E171*	LRRC61_uc003wgx.2_Nonsense_Mutation_p.E171*|LRRC61_uc003wgw.2_Nonsense_Mutation_p.E171*|LRRC61_uc003wgz.3_Nonsense_Mutation_p.E171*	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	171	LRRCT.										0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			GCGTGGTAGTGAGTTCTACCA	0.652													34	39					4.11147e-13	4.44051e-13	0.003755	1	0
GIMAP4	55303	broad.mit.edu	37	7	150269947	150269947	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:150269947C>T	uc003whl.2	+	3	871	c.789C>T	c.(787-789)ATC>ATT	p.I263I	GIMAP4_uc011kuu.1_Silent_p.I124I|GIMAP4_uc011kuv.1_Silent_p.I277I	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	263	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGAGAAAATCAGAAAGCTGG	0.463													16	21					0	0	0.004990	0	0
KCNH2	3757	broad.mit.edu	37	7	150648916	150648917	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:150648916_150648917CC>TT	uc003wic.2	-	7	1577_1578	c.1564_1565GG>AA	c.(1564-1566)GGG>AAG	p.G522K	KCNH2_uc003wib.2_Missense_Mutation_p.G182K|KCNH2_uc011kux.1_Missense_Mutation_p.G426K|KCNH2_uc003wid.2_Missense_Mutation_p.G182K|KCNH2_uc003wie.2_Missense_Mutation_p.G522K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	522	Helical; Voltage-sensor; Name=Segment S4; (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	CTTCAGCAGCCCGATCAGCTGG	0.668													21	21					0	0	0.004672	0	0
AGAP3	116988	broad.mit.edu	37	7	150814262	150814262	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:150814262C>T	uc003wjg.1	+	3	474	c.471C>T	c.(469-471)TCC>TCT	p.S157S	AGAP3_uc003wje.1_5'UTR|AGAP3_uc003wjf.1_Silent_p.S157S|AGAP3_uc010lpy.1_Silent_p.S157S|AGAP3_uc003wjh.1_Silent_p.S337S	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	121	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						AGGAGGAGTCCCCTGAAGGTG	0.677													50	48					0	0	0.003610	0	0
NUB1	51667	broad.mit.edu	37	7	151053246	151053246	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr7:151053246C>T	uc003wjx.2	+	7	708	c.703C>T	c.(703-705)CCG>TCG	p.P235S	NUB1_uc003wjv.2_RNA|NUB1_uc003wjw.2_Missense_Mutation_p.P211S|NUB1_uc010lqb.2_RNA|NUB1_uc003wjy.2_RNA|NUB1_uc011kvj.1_Intron|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	211					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		AGAAATGACACCGTACTTAGA	0.403													17	33					0	0	0.006122	0	0
CSMD1	64478	broad.mit.edu	37	8	2820050	2820050	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:2820050C>T	uc011kwk.1	-	61	9959	c.9569G>A	c.(9568-9570)GGA>GAA	p.G3190E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2519E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1081E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3190	Extracellular (Potential).|Sushi 26.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTGGAGGATCCCACGAGTAT	0.512													29	17					0	0	0.012213	0	0
CSMD1	64478	broad.mit.edu	37	8	2857600	2857600	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:2857600C>T	uc011kwk.1	-	53	8476	c.8086G>A	c.(8086-8088)GGC>AGC	p.G2696S	CSMD1_uc011kwj.1_Missense_Mutation_p.G2025S|CSMD1_uc010lrg.2_Missense_Mutation_p.G706S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2696	Extracellular (Potential).|Sushi 18.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TAACTGAAGCCATCTCCACTA	0.468													46	17					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10464599	10464599	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:10464599C>T	uc003wtc.2	-	4	7238	c.7009G>A	c.(7009-7011)GAG>AAG	p.E2337K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2337					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCCTTCCTCTCTGCATGAGGG	0.547													137	50					0	0	0.003610	0	0
XKR6	286046	broad.mit.edu	37	8	10756377	10756377	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:10756377G>A	uc003wtk.1	-	3	1038	c.1011C>T	c.(1009-1011)TCC>TCT	p.S337S		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	337	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GCTTGTGATAGGAGGCTAGCA	0.562													69	24					0	0	0.003610	0	0
ADAM28	10863	broad.mit.edu	37	8	24170961	24170961	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:24170961G>A	uc003xdy.2	+	6	527	c.444G>A	c.(442-444)CGG>CGA	p.R148R	ADAM28_uc003xdx.2_Silent_p.R148R|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	148					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCATACATCGGGATGGACAGG	0.448													39	8					0	0	0.004289	0	0
INTS9	55756	broad.mit.edu	37	8	28671062	28671062	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:28671062C>T	uc003xha.2	-	7	855	c.556G>A	c.(556-558)GAG>AAG	p.E186K	INTS9_uc011lav.1_Missense_Mutation_p.E162K|INTS9_uc011law.1_Missense_Mutation_p.E165K|INTS9_uc011lax.1_Missense_Mutation_p.E79K|INTS9_uc010lvc.2_RNA|INTS9_uc003xhb.2_Missense_Mutation_p.E186K	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	186					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		GAGTTCACCTCTTGCATTGTA	0.413													63	24					0	0	0.003610	0	0
KIF13B	23303	broad.mit.edu	37	8	28980985	28980985	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:28980985C>T	uc003xhh.3	-	28	3436	c.3377G>A	c.(3376-3378)CGT>CAT	p.R1126H	uc003xhi.1_Intron	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1126	Potential.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		CTGCGCTTCACGGTCAGCATC	0.493													52	81					0	0	0.003610	0	0
LOC728024	728024	broad.mit.edu	37	8	37605234	37605234	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:37605234C>T	uc010lvx.1	-	1	288	c.142G>A	c.(142-144)GGA>AGA	p.G48R	ERLIN2_uc003xke.3_Intron	NR_003671				SubName: Full=cDNA FLJ38978 fis, clone NT2RI2004209; SubName: Full=Chromosome X open reading frame 56, isoform CRA_b; SubName: Full=Putative uncharacterized protein CXorf56;												0						AGCAGCAGTCCACACTTTGCA	0.468													43	12					0	0	0.009718	0	0
BRF2	55290	broad.mit.edu	37	8	37704431	37704431	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:37704431G>T	uc003xkk.2	-	3	587	c.477C>A	c.(475-477)CTC>CTA	p.L159L		NM_018310	NP_060780	Q9HAW0	BRF2_HUMAN	RNA polymerase III transcription initiation	159					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter|transcription initiation, DNA-dependent	nucleoplasm	protein binding|zinc ion binding				0		Lung NSC(58;0.118)|all_lung(54;0.195)	BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;1.81e-10)			CCAGTCCCAGGAGCTTCACTA	0.532													197	65					1.47202e-86	1.60665e-86	0.003610	1	0
ADAM18	8749	broad.mit.edu	37	8	39466603	39466603	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:39466603A>G	uc003xni.2	+	4	231	c.231A>G	c.(229-231)GAA>GAG	p.E77E	ADAM18_uc003xnh.2_Silent_p.E77E|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.E77E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	77					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CATATAATGAAACTGGATCTT	0.244													23	9					0	0	0.008361	0	0
C8orf4	56892	broad.mit.edu	37	8	40011331	40011331	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:40011331C>T	uc003xnq.1	+	1	343	c.280C>T	c.(280-282)CAG>TAG	p.Q94*		NM_020130	NP_064515	Q9NR00	CH004_HUMAN	thyroid cancer-1	94					apoptosis					ovary(1)	1	Ovarian(28;0.0173)	all_cancers(7;5.34e-21)|all_epithelial(6;1.04e-14)|Lung NSC(58;9.35e-06)|all_lung(54;1.39e-05)|Hepatocellular(245;0.00745)|Breast(189;0.0334)|Colorectal(162;0.0815)|Myeloproliferative disorder(644;0.116)|Esophageal squamous(32;0.141)	LUSC - Lung squamous cell carcinoma(45;0.000149)	KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		CAAGCTTTTCCAGTTTCTGAA	0.428													57	17					0	0	0.003610	0	0
ZMAT4	79698	broad.mit.edu	37	8	40532385	40532385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:40532385G>A	uc003xnr.2	-	5	561	c.415C>T	c.(415-417)CAA>TAA	p.Q139*	ZMAT4_uc003xns.2_Intron	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	139						nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			TCTCTTCTTTGATAGGGAGAT	0.507													132	40					0	0	0.003610	0	0
GINS4	84296	broad.mit.edu	37	8	41399330	41399330	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:41399330C>T	uc003xnx.2	+	7	697	c.487C>T	c.(487-489)CCC>TCC	p.P163S	GINS4_uc003xny.2_Missense_Mutation_p.P163S	NM_032336	NP_115712	Q9BRT9	SLD5_HUMAN	GINS complex subunit 4	163					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				skin(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.00732)|Lung NSC(58;0.0207)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00329)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			CCTGGCAGTTCCCAAACCAGA	0.443													28	12					0	0	0.008361	0	0
RP1	6101	broad.mit.edu	37	8	55533886	55533887	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:55533886_55533887CC>TT	uc003xsd.1	+	2	508_509	c.360_361CC>TT	c.(358-363)GCCCGT>GCTTGT	p.R121C	RP1_uc011ldy.1_Missense_Mutation_p.R121C	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	121					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGGACAAAGCCCGTCGGCGCCC	0.718													33	22					0	0	0.004672	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68188300	68188300	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:68188300G>A	uc003xxo.1	-	9	1638	c.1248C>T	c.(1246-1248)TCC>TCT	p.S416S		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	416					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			GTAAAATGTGGGAAAACTTAG	0.368													15	7					0	0	0.004007	0	0
KCNB2	9312	broad.mit.edu	37	8	73848694	73848694	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:73848694C>T	uc003xzb.2	+	3	1692	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	368					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCACCAGTATCCCTGCATCAT	0.443													98	24					0	0	0.003610	0	0
STAU2	27067	broad.mit.edu	37	8	74528007	74528007	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:74528007G>A	uc003xzm.2	-	8	817	c.581C>T	c.(580-582)TCA>TTA	p.S194L	STAU2_uc011lfg.1_Missense_Mutation_p.S22L|STAU2_uc003xzn.2_Missense_Mutation_p.S162L|STAU2_uc011lfh.1_Missense_Mutation_p.S90L|STAU2_uc003xzo.2_Missense_Mutation_p.S194L|STAU2_uc003xzp.2_Missense_Mutation_p.S162L|STAU2_uc011lfi.1_Missense_Mutation_p.S156L|STAU2_uc003xzq.2_5'UTR|STAU2_uc010lzk.2_Missense_Mutation_p.S162L|STAU2_uc010lzl.1_Missense_Mutation_p.S22L	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	194					transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			ATCCTTTCCTGATTCACCATT	0.333													40	13					0	0	0.006999	0	0
PMP2	5375	broad.mit.edu	37	8	82355666	82355666	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:82355666G>A	uc003ycb.1	-	4	464	c.366C>T	c.(364-366)GGC>GGT	p.G122G	PMP2_uc010lzv.1_RNA	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	122						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			TGCACACCACGCCCTTCATTT	0.313													48	20					0	0	0.003610	0	0
CDH17	1015	broad.mit.edu	37	8	95143165	95143165	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:95143165G>A	uc003ygh.2	-	16	2348	c.2223C>T	c.(2221-2223)GTC>GTT	p.V741V	CDH17_uc011lgo.1_Silent_p.V527V|CDH17_uc011lgp.1_Silent_p.V741V	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	741	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			GGATCAAGACGACATACTCCC	0.478													48	23					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813480	106813480	+	Silent	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:106813480A>G	uc003ymd.2	+	8	1193	c.1170A>G	c.(1168-1170)AAA>AAG	p.K390K	ZFPM2_uc011lhs.1_Silent_p.K121K|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	390					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTAGCGGCAAACTTCCCAGAG	0.517													68	12					0	0	0.003610	0	0
SLC30A8	169026	broad.mit.edu	37	8	118165286	118165286	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:118165286G>A	uc003yoh.2	+	3	605	c.375G>A	c.(373-375)TCG>TCA	p.S125S	SLC30A8_uc010mcz.2_Silent_p.S76S|SLC30A8_uc011lia.1_Silent_p.S76S|SLC30A8_uc003yog.2_Silent_p.S76S	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	125	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GGTTGTCATCGAAGCCTCCCT	0.527													265	85					0	0	0.003610	0	0
FER1L6	654463	broad.mit.edu	37	8	124968309	124968309	+	Missense_Mutation	SNP	C	T	T	rs149657957	by1000genomes	TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:124968309C>T	uc003yqw.2	+	2	277	c.71C>T	c.(70-72)GCG>GTG	p.A24V		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	24	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AACAAGGCTGCGAAAGGTGAG	0.507													9	3					0	0	0.008291	0	0
FER1L6	654463	broad.mit.edu	37	8	125047638	125047638	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:125047638G>A	uc003yqw.2	+	19	2613	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	803	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTATGAAGCAGAAATGTCCTC	0.547													39	14					0	0	0.007835	0	0
TG	7038	broad.mit.edu	37	8	133920503	133920503	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:133920503G>A	uc003ytw.2	+	18	3961	c.3920G>A	c.(3919-3921)AGT>AAT	p.S1307N	TG_uc010mdw.2_Missense_Mutation_p.S66N	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1307					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AAGATGTGCAGTGCTGACTAC	0.592													37	22					0	0	0.006230	0	0
COL22A1	169044	broad.mit.edu	37	8	139606359	139606359	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:139606359C>T	uc003yvd.2	-	63	4963	c.4516G>A	c.(4516-4518)GGA>AGA	p.G1506R	COL22A1_uc011ljo.1_Missense_Mutation_p.G786R	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1506	Pro-rich.|Gly-rich.|Collagen-like 15.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCATCTTTTCCAGGGGGCCCT	0.647										HNSCC(7;0.00092)			33	17					0	0	0.004878	0	0
DENND3	22898	broad.mit.edu	37	8	142151389	142151389	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:142151389C>T	uc003yvy.2	+	4	627	c.349C>T	c.(349-351)CCC>TCC	p.P117S	DENND3_uc003yvw.1_Missense_Mutation_p.P130S|DENND3_uc003yvx.2_Silent_p.F195F|DENND3_uc010mep.2_Missense_Mutation_p.P130S	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	117	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CTCCAGGTTTCCCTATTACAA	0.587													75	22					0	0	0.003610	0	0
PLEC	5339	broad.mit.edu	37	8	145003683	145003683	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:145003683G>C	uc003zaf.1	-	24	3561	c.3391C>G	c.(3391-3393)CTG>GTG	p.L1131V	PLEC_uc003zab.1_Missense_Mutation_p.L994V|PLEC_uc003zac.1_Missense_Mutation_p.L998V|PLEC_uc003zad.2_Missense_Mutation_p.L994V|PLEC_uc003zae.1_Missense_Mutation_p.L962V|PLEC_uc003zag.1_Missense_Mutation_p.L972V|PLEC_uc003zah.2_Missense_Mutation_p.L980V|PLEC_uc003zaj.2_Missense_Mutation_p.L1021V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1131	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCCAGCTGCAGCCGGATGTCT	0.672													21	12					0	0	0.012319	0	0
PLEC	5339	broad.mit.edu	37	8	145003928	145003928	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:145003928G>A	uc003zaf.1	-	23	3390	c.3220C>T	c.(3220-3222)CTG>TTG	p.L1074L	PLEC_uc003zab.1_Silent_p.L937L|PLEC_uc003zac.1_Silent_p.L941L|PLEC_uc003zad.2_Silent_p.L937L|PLEC_uc003zae.1_Silent_p.L905L|PLEC_uc003zag.1_Silent_p.L915L|PLEC_uc003zah.2_Silent_p.L923L|PLEC_uc003zaj.2_Silent_p.L964L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1074	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CTGTCCCGCAGGAAGGCCTGG	0.692													12	6					0	0	0.001855	0	0
HSF1	3297	broad.mit.edu	37	8	145535489	145535489	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:145535489C>T	uc003zbt.3	+	8	997	c.827C>T	c.(826-828)CCC>CTC	p.P276L	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	276	Regulatory domain.					cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			CCTGCCAGCCCCATGGCCTCC	0.687													33	9					0	0	0.003271	0	0
HSF1	3297	broad.mit.edu	37	8	145535748	145535748	+	Silent	SNP	C	T	T	rs143898779		TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:145535748C>T	uc003zbt.3	+	9	1130	c.960C>T	c.(958-960)TCC>TCT	p.S320S	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	320						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			GCCCATCTTCCGTGGACACCC	0.711													34	15					0	0	0.006230	0	0
HSF1	3297	broad.mit.edu	37	8	145537219	145537219	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:145537219G>A	uc003zbt.3	+	10	1335	c.1165G>A	c.(1165-1167)GAT>AAT	p.D389N	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	389	Transactivation domain.|Hydrophobic repeat HR-C.					cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			TGACCACTTGGATGCTATGGA	0.597													20	4					0	0	0.002299	0	0
RPL8	6132	broad.mit.edu	37	8	146017431	146017431	+	Silent	SNP	G	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr8:146017431G>C	uc003zeb.2	-	2	195	c.84C>G	c.(82-84)CGC>CGG	p.R28R	RPL8_uc003zdz.2_RNA|RPL8_uc003zea.2_Silent_p.R28R|RPL8_uc003zec.2_Silent_p.R28R|RPL8_uc010mgc.2_Silent_p.R28R|RPL8_uc011lll.1_5'Flank	NM_033301	NP_150644	P62917	RL8_HUMAN	ribosomal protein L8	28					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	rRNA binding|structural constituent of ribosome				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.191)		CGGCGCGCAGGCGCGCAGCGC	0.711													21	9					0	0	0.010504	0	0
MPDZ	8777	broad.mit.edu	37	9	13193234	13193234	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:13193234G>A	uc010mia.1	-	13	1792	c.1735C>T	c.(1735-1737)CGA>TGA	p.R579*	MPDZ_uc010mhy.2_Nonsense_Mutation_p.R579*|MPDZ_uc010mhz.2_Nonsense_Mutation_p.R579*|MPDZ_uc011lmn.1_Nonsense_Mutation_p.R579*|MPDZ_uc003zlb.3_Nonsense_Mutation_p.R579*	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	579	PDZ 4.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		AGAACAGATCGGATAAAATGA	0.468													24	15					0	0	0.004656	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18753396	18753396	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:18753396G>A	uc003zne.3	+	16	2234	c.2107G>A	c.(2107-2109)GAA>AAA	p.E703K		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	703	TSP type-1 6.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AGAGATGAATGAAACAGTCAT	0.557													5	4					0	0	0.000602	0	0
TEK	7010	broad.mit.edu	37	9	27172649	27172649	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:27172649C>T	uc003zqi.3	+	5	1106	c.664C>T	c.(664-666)CAT>TAT	p.H222Y	TEK_uc010mjc.1_Missense_Mutation_p.H75Y|TEK_uc011lnn.1_Missense_Mutation_p.H222Y|TEK_uc011lno.1_Missense_Mutation_p.H222Y|TEK_uc011lnp.1_Missense_Mutation_p.H118Y|TEK_uc003zqj.1_Missense_Mutation_p.H199Y	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	222	Extracellular (Potential).|EGF-like 1.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TGAATGCAACCATCTCTGTAC	0.413													12	12					0	0	0.001368	0	0
DNAJB5	25822	broad.mit.edu	37	9	34996329	34996330	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:34996329_34996330CC>TT	uc003zvt.2	+	3	417_418	c.279_280CC>TT	c.(277-282)GACCCC>GATTCC	p.P94S	DNAJB5_uc003zvs.2_Missense_Mutation_p.P128S|DNAJB5_uc011los.1_Missense_Mutation_p.P166S	NM_012266	NP_036398	O75953	DNJB5_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 5	94					protein folding|response to unfolded protein		heat shock protein binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(32;0.00575)			TTCATGGGGACCCCCATGCCAC	0.594													15	18					0	0	0.004672	0	0
FBXO10	26267	broad.mit.edu	37	9	37537332	37537332	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:37537332G>A	uc004aab.2	-	3	1243	c.1194C>T	c.(1192-1194)TCC>TCT	p.S398S	FBXO10_uc004aac.2_Silent_p.S414S|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	398						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		GCAGCTGAATGGATGCTCCTG	0.587													5	2					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	9	69067929	69067929	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:69067929G>A	uc004afe.1	+	3		c.744_splice	c.e3+1		uc010mnq.1_Splice_Site					Homo sapiens cDNA, FLJ18209.																		TGATATGTTGGTGAGTCAGTT	0.209													8	14					0	0	0.008291	0	0
TMEM2	23670	broad.mit.edu	37	9	74332991	74332991	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:74332991G>A	uc011lsa.1	-	13	2812	c.2272C>T	c.(2272-2274)CGA>TGA	p.R758*	TMEM2_uc010mos.2_Nonsense_Mutation_p.R695*|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	758						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TGATGAGGTCGAAATCTAGGG	0.338													26	13					0	0	0.005443	0	0
PCSK5	5125	broad.mit.edu	37	9	78711013	78711013	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:78711013A>T	uc004ajz.2	+	8	1640	c.1102A>T	c.(1102-1104)AAA>TAA	p.K368*	PCSK5_uc004ajy.2_Nonsense_Mutation_p.K368*|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	368	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CTACGATAAGAAAATCGTACG	0.413													11	8					0	0	0.010729	0	0
PCSK5	5125	broad.mit.edu	37	9	78799588	78799588	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:78799588G>A	uc004ajz.2	+	17	2736	c.2198_splice	c.e17-1	p.K733_splice	PCSK5_uc004aka.2_Splice_Site|PCSK5_uc004akb.2_Intron	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5						anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TTTTTTAACAGAGAAAAATCT	0.363													12	5					0	0	0.001855	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323205	79323205	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:79323205C>T	uc010mpk.2	-	8	4109	c.3985G>A	c.(3985-3987)GAA>AAA	p.E1329K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1329					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CCCTGGGCTTCCTTCTCACTT	0.527													20	16					0	0	0.012319	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607623	84607623	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:84607623G>A	uc004amn.2	+	4	2285	c.2238G>A	c.(2236-2238)AAG>AAA	p.K746K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	746						integral to membrane					0						ATGTTCTAAAGAAGTCCGCAT	0.453													14	9					0	0	0.006122	0	0
TEX10	54881	broad.mit.edu	37	9	103092373	103092373	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:103092373G>A	uc004bas.2	-	6	1544	c.1329C>T	c.(1327-1329)TCC>TCT	p.S443S	TEX10_uc011lvf.1_Silent_p.S282S|TEX10_uc011lvg.1_Silent_p.S446S|TEX10_uc011lvh.1_Silent_p.S378S	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	443						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		CATTTGCCAGGGAGACCATGA	0.388													32	25					0	0	0.008361	0	0
ALDOB	229	broad.mit.edu	37	9	104192063	104192063	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:104192063C>T	uc004bbk.2	-	3	380	c.298G>A	c.(298-300)GAA>AAA	p.E100K		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	100					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ATCCCCTTTTCCTTGAGGATG	0.532													79	57					0	0	0.003610	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499750	104499750	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:104499750G>A	uc004bbp.1	-	1	1113	c.512C>T	c.(511-513)TCG>TTG	p.S171L	GRIN3A_uc004bbq.1_Missense_Mutation_p.S171L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	171	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GCTCCATGGCGAACTAGGGGA	0.607													13	11					0	0	0.003163	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112704975	112704975	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:112704975C>T	uc004bei.2	+	7	698	c.506C>T	c.(505-507)GCC>GTC	p.A169V	PALM2_uc004bef.2_Missense_Mutation_p.A171V|PALM2_uc004beg.2_Missense_Mutation_p.A137V|PALM2_uc004beh.3_Missense_Mutation_p.A169V|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GCTGTGTACGCCATGGAAATT	0.398													5	5					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	9	114371468	114371468	+	RNA	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:114371468A>G	uc004bfk.3	-	2		c.332T>C								Homo sapiens chromosome 9 open reading frame 29, mRNA (cDNA clone MGC:39589 IMAGE:4838739), complete cds.																		GGTCCGGATAACATGAGAAAC	0.502													47	28					0	0	0.003610	0	0
AKNA	80709	broad.mit.edu	37	9	117139527	117139527	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:117139527G>A	uc004biq.3	-	2	695	c.560C>T	c.(559-561)TCC>TTC	p.S187F	AKNA_uc004bio.3_5'Flank|AKNA_uc004bip.3_Missense_Mutation_p.S106F|AKNA_uc004bir.3_Missense_Mutation_p.S187F|AKNA_uc004bis.3_Missense_Mutation_p.S187F|AKNA_uc010mve.2_Missense_Mutation_p.S68F|AKNA_uc004biu.1_Intron|AKNA_uc004biv.1_Missense_Mutation_p.S187F|AKNA_uc004biw.1_Missense_Mutation_p.S187F	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GTTGACCTCGGAATGTTCAGA	0.592													26	23					0	0	0.005443	0	0
PAPPA	5069	broad.mit.edu	37	9	119158800	119158800	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:119158800C>T	uc004bjn.2	+	22	5170	c.4789C>T	c.(4789-4791)CCT>TCT	p.P1597S	PAPPA_uc011lxq.1_Missense_Mutation_p.P972S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1597					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CACCCCATTCCCTATGTCCTG	0.433													52	47					0	0	0.003610	0	0
DBC1	1620	broad.mit.edu	37	9	121930073	121930073	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:121930073G>A	uc004bkc.2	-	8	2031	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	525					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TGAGAGTGAGGGACATGCGCT	0.572													9	6					0	0	0.006214	0	0
ZBTB34	403341	broad.mit.edu	37	9	129643035	129643035	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:129643035A>G	uc004bqm.3	+	2	1442	c.1345A>G	c.(1345-1347)AAA>GAA	p.K449E		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	449	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCACTTGCGGAAAAACCACCC	0.527													16	13					0	0	0.006122	0	0
CERCAM	51148	broad.mit.edu	37	9	131185509	131185509	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:131185509C>T	uc004buz.3	+	3	791	c.393C>T	c.(391-393)ACC>ACT	p.T131T	CERCAM_uc004buy.1_Silent_p.T53T|CERCAM_uc010mxz.2_Silent_p.T53T|CERCAM_uc010mya.1_5'Flank	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	131					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane		p.R131C(1)		pancreas(1)	1						AAGCCCTCACCTTTGCCAGGA	0.542													42	33					0	0	0.003610	0	0
PPP2R4	5524	broad.mit.edu	37	9	131899968	131899968	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:131899968C>T	uc004bxm.1	+	9	1155	c.888C>T	c.(886-888)ACC>ACT	p.T296T	PPP2R4_uc004bxl.1_Silent_p.T261T|PPP2R4_uc011mbo.1_Silent_p.T296T|PPP2R4_uc010myr.1_Intron|PPP2R4_uc004bxn.1_Silent_p.T261T|PPP2R4_uc004bxo.1_Silent_p.T219T|PPP2R4_uc011mbp.1_Silent_p.T232T|PPP2R4_uc011mbq.1_Silent_p.T219T|PPP2R4_uc010mys.1_Silent_p.T226T|PPP2R4_uc011mbr.1_5'Flank|PPP2R4_uc004bxp.2_5'Flank	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	296					ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		TGTTTATTACCGAGGTGAGGA	0.547													10	6					0	0	0.006214	0	0
NUP214	8021	broad.mit.edu	37	9	134073012	134073013	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:134073012_134073013CC>AT	uc004cag.2	+	29	4242_4243	c.4131_4132CC>AT	c.(4129-4134)CCCCCG>CCATCG	p.P1378S	NUP214_uc004cah.2_Missense_Mutation_p.P1368S|NUP214_uc004cai.2_Missense_Mutation_p.P808S|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.P204S|NUP214_uc011mcf.1_Missense_Mutation_p.P155S|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1378	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.		P -> L (in a breast cancer sample; somatic mutation).		carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding	p.P1378L(1)		breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TTACTGCCCCCCCGGTGTTAGG	0.54			T	DEK|SET|ABL1	AML|T-ALL								27	16					0	0	0.004672	0	0
FCN1	2219	broad.mit.edu	37	9	137801781	137801781	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:137801781C>T	uc004cfi.2	-	9	936	c.844G>A	c.(844-846)GAC>AAC	p.D282N		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	282	Fibrinogen C-terminal.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		GCATGACAGTCGGCGTACCAC	0.493													55	32					0	0	0.003610	0	0
MAMDC4	158056	broad.mit.edu	37	9	139751375	139751375	+	Silent	SNP	G	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:139751375G>T	uc004cjs.2	+	16	1904	c.1854G>T	c.(1852-1854)CTG>CTT	p.L618L	MAMDC4_uc011mej.1_5'UTR	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	697	MAM 4.|Extracellular (Potential).				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		TTGTGCTCCTGGACCCCACAG	0.667													18	12					7.45023e-12	8.02845e-12	0.010504	1	0
ABCA2	20	broad.mit.edu	37	9	139915193	139915193	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr9:139915193G>A	uc011mem.1	-	8	1363	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F	ABCA2_uc011mel.1_Silent_p.F406F|ABCA2_uc004ckl.1_Silent_p.F336F|ABCA2_uc004ckm.1_Silent_p.F436F|ABCA2_uc004ckn.1_5'Flank|ABCA2_uc004cko.1_Silent_p.F182F|ABCA2_uc010nca.2_Silent_p.F336F	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	405					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGAGCTGTACGAAGGCTGAGC	0.697													7	1					0	0	0.004482	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407760	1407761	+	Nonsense_Mutation	DNP	TT	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:1407760_1407761TT>AA	uc010nct.2	+	7	774_775	c.452_453TT>AA	c.(451-453)TTT>TAA	p.F151*	CSF2RA_uc011mhb.1_Nonsense_Mutation_p.F151*|CSF2RA_uc004cpq.2_Nonsense_Mutation_p.F151*|CSF2RA_uc004cpn.2_Nonsense_Mutation_p.F151*|CSF2RA_uc004cpo.2_Nonsense_Mutation_p.F151*|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Nonsense_Mutation_p.F18*|CSF2RA_uc004cpp.2_Nonsense_Mutation_p.F151*|CSF2RA_uc010ncv.2_Nonsense_Mutation_p.F151*|CSF2RA_uc004cpr.2_Nonsense_Mutation_p.F151*	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	151	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTCCAGTATTTTTTGTACATAC	0.431													41	112					0	0	0.004672	0	0
DHRSX	207063	broad.mit.edu	37	X	2343329	2343330	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:2343329_2343330AG>CA	uc004cqf.3	-	2	174_175	c.125_126CT>TG	c.(124-126)CCT>CTG	p.P42L		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	42							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CGACACGGTCAGGTCGTGGGGG	0.45													55	55					0	0	0.004672	0	0
MXRA5	25878	broad.mit.edu	37	X	3235332	3235332	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:3235332G>A	uc004crg.3	-	6	6547	c.6390C>T	c.(6388-6390)TCC>TCT	p.S2130S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2130	Ig-like C2-type 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCTGCGCGCGGAGCCTACCA	0.667													20	2					0	0	0.007413	0	0
ARHGAP6	395	broad.mit.edu	37	X	11160413	11160413	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:11160413C>T	uc004cup.1	-	12	3070	c.2197G>A	c.(2197-2199)GAT>AAT	p.D733N	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cum.1_Missense_Mutation_p.D530N|ARHGAP6_uc004cun.1_Missense_Mutation_p.D553N	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	733					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						CCCCAGATATCGAAAGGCTCC	0.313													59	14					0	0	0.003610	0	0
MAP3K15	389840	broad.mit.edu	37	X	19416366	19416366	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:19416366C>T	uc004czk.1	-	16	2106	c.469G>A	c.(469-471)GAA>AAA	p.E157K	MAP3K15_uc004czj.1_Missense_Mutation_p.E117K	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	682	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					TCCGGGATTTCTTTGATGGCT	0.547													191	40					0	0	0.003610	0	0
PCYT1B	9468	broad.mit.edu	37	X	24637166	24637166	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:24637166G>A	uc004dbi.2	-	2	386	c.153C>T	c.(151-153)ACC>ACT	p.T51T	PCYT1B_uc004dbk.3_Silent_p.T51T|PCYT1B_uc004dbj.2_Silent_p.T33T	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	51						endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	ACTGGCAGTTGGTTTCATCAG	0.488													30	2					0	0	0.012213	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212600	26212600	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:26212600A>T	uc004dbr.2	+	2	786	c.637A>T	c.(637-639)AAA>TAA	p.K213*	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	213	MAGE.									ovary(3)	3						GTTTGAGAAGAAAGAGTCCAT	0.473													53	8					0	0	0.003610	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998737	27998737	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:27998737C>T	uc004dbx.1	-	1	830	c.715G>A	c.(715-717)GAT>AAT	p.D239N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	239	WD 2.									ovary(3)|skin(1)	4						ACATTAATATCGTGACCACTC	0.512													36	6					0	0	0.004289	0	0
RPGR	6103	broad.mit.edu	37	X	38129039	38129039	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:38129039T>G	uc004deb.2	-	19	2456	c.2288A>C	c.(2287-2289)AAG>ACG	p.K763T	RPGR_uc004dea.2_RNA|RPGR_uc004dec.2_RNA	NM_000328	NP_000319	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform A	763	Glu-rich.				intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						ATTGTTATTCTTGACAATCTT	0.348													37	6					0	0	0.006999	0	0
ZNF674	641339	broad.mit.edu	37	X	46388340	46388340	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:46388340G>A	uc004dgr.2	-	4	247	c.20C>T	c.(19-21)TCA>TTA	p.S7L	ZNF674_uc011mlg.1_Missense_Mutation_p.S7L|ZNF674_uc010nhm.2_Missense_Mutation_p.S7L	NM_001039891	NP_001034980	Q2M3X9	ZN674_HUMAN	zinc finger family member 674 isoform 1	7					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)	2						GAAGGTCAATGATTCCTGTAA	0.488													42	7					0	0	0.011902	0	0
OTUD5	55593	broad.mit.edu	37	X	48780999	48780999	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:48780999C>T	uc004dlu.2	-	8	1566	c.1505G>A	c.(1504-1506)GGG>GAG	p.G502E	OTUD5_uc004dlt.3_Missense_Mutation_p.G497E|OTUD5_uc004dlv.2_Missense_Mutation_p.G497E|OTUD5_uc011mmp.1_Missense_Mutation_p.G280E	NM_017602	NP_060072	Q96G74	OTUD5_HUMAN	OTU domain containing 5 isoform a	502					negative regulation of type I interferon production		cysteine-type peptidase activity			pancreas(1)	1						CCGGTCGGCCCCTGCCGAGAA	0.502													11	2					0	0	0.008291	0	0
MAGIX	79917	broad.mit.edu	37	X	49021314	49021314	+	Silent	SNP	T	C	C			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:49021314T>C	uc010nin.1	+	4	440	c.393T>C	c.(391-393)GGT>GGC	p.G131G	MAGIX_uc010nio.1_Intron|MAGIX_uc004dmt.2_Intron|MAGIX_uc004dmu.2_Silent_p.G72G|MAGIX_uc004dmw.2_Silent_p.G64G	NM_024859	NP_079135	Q9H6Y5	MAGIX_HUMAN	MAGI family member, X-linked isoform a	131	PDZ.										0						TGGTTCGCGGTTACGCAGGCT	0.617													98	12					0	0	0.003610	0	0
CACNA1F	778	broad.mit.edu	37	X	49088167	49088167	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:49088167C>T	uc004dnb.2	-	2	310	c.248G>A	c.(247-249)CGG>CAG	p.R83Q	CACNA1F_uc010nip.2_Missense_Mutation_p.R83Q	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	83	I.|Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	GATGCAGGACCGTCGCAGAGG	0.607													55	7					0	0	0.003610	0	0
KDM5C	8242	broad.mit.edu	37	X	53243945	53243945	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:53243945G>A	uc004drz.2	-	8	1581	c.1048C>T	c.(1048-1050)CAC>TAC	p.H350Y	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.H283Y|KDM5C_uc004dsa.2_Missense_Mutation_p.H349Y	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	350	PHD-type 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CAGAAGATGTGGTAGTTGTCA	0.567			N|F|S		clear cell renal carcinoma								38	5					0	0	0.008740	0	0
PFKFB1	5207	broad.mit.edu	37	X	54960284	54960284	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:54960284C>T	uc004dty.1	-	13	1397	c.1326G>A	c.(1324-1326)GAG>GAA	p.E442E	PFKFB1_uc010nkd.1_Silent_p.E250E|PFKFB1_uc011mol.1_Silent_p.E377E	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	442	Fructose-2,6-bisphosphatase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						TGTTCACGGCCTCCACATTCA	0.542													50	6					0	0	0.003610	0	0
HEPH	9843	broad.mit.edu	37	X	65390556	65390556	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:65390556G>A	uc011moz.1	+	2	213	c.153G>A	c.(151-153)ACG>ACA	p.T51T	HEPH_uc004dwn.2_Silent_p.T51T|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Silent_p.T51T|HEPH_uc011mpa.1_Silent_p.T51T	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	48	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ATGTCATCACGAACCAGCCTC	0.512													19	4					0	0	0.008871	0	0
ZNF711	7552	broad.mit.edu	37	X	84525729	84525729	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:84525729C>T	uc004eeo.2	+	9	1528	c.1181C>T	c.(1180-1182)TCC>TTC	p.S394F	ZNF711_uc004eep.2_Missense_Mutation_p.S394F|ZNF711_uc004eeq.2_Missense_Mutation_p.S440F|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	394	C2H2-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AAGTTTAAATCCAGGGGATTC	0.353													11	2					0	0	0.001855	0	0
KLHL4	56062	broad.mit.edu	37	X	86890699	86890699	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:86890699G>A	uc004efb.2	+	9	2031	c.1849G>A	c.(1849-1851)GGA>AGA	p.G617R	KLHL4_uc004efa.2_Missense_Mutation_p.G617R	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	617	Kelch 4.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CACATACAATGGATTCTTATA	0.458													35	5					0	0	0.005524	0	0
CENPI	2491	broad.mit.edu	37	X	100387214	100387214	+	Silent	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:100387214G>A	uc004egx.2	+	13	1593	c.1323G>A	c.(1321-1323)AAG>AAA	p.K441K	CENPI_uc011mrg.1_Silent_p.K441K|CENPI_uc004egy.2_Silent_p.K441K	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	441					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TCCTGTATAAGAGCCTTCCTC	0.398													176	25					0	0	0.003610	0	0
NRK	203447	broad.mit.edu	37	X	105152852	105152852	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:105152852C>T	uc004emd.2	+	13	1522	c.1219C>T	c.(1219-1221)CAG>TAG	p.Q407*	NRK_uc010npc.1_Nonsense_Mutation_p.Q75*	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	407	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CCAGGCACTTCAGCAGCTACA	0.582										HNSCC(51;0.14)			35	10					0	0	0.005524	0	0
CXorf41	139212	broad.mit.edu	37	X	106456205	106456205	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:106456205G>A	uc004enc.2	+	2	162	c.100G>A	c.(100-102)GCC>ACC	p.A34T	CXorf41_uc004end.2_Missense_Mutation_p.A34T	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	34											0						AGCTCTGGAAGCCCTCTCTAA	0.358													42	8					0	0	0.003610	0	0
RGAG1	57529	broad.mit.edu	37	X	109694656	109694656	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:109694656C>T	uc004eor.1	+	3	1057	c.811C>T	c.(811-813)CTG>TTG	p.L271L	RGAG1_uc011msr.1_Silent_p.L271L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	271										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AATATCCTCACTGATAATGTC	0.498													105	17					0	0	0.003610	0	0
GRIA3	2892	broad.mit.edu	37	X	122528859	122528859	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:122528859G>A	uc004etq.3	+	7	1084	c.791G>A	c.(790-792)GGA>GAA	p.G264E	GRIA3_uc004etr.3_Missense_Mutation_p.G264E|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.G248E	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	264	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	ATGCATGGGGGAGCCAACATT	0.428													82	10					0	0	0.003610	0	0
STAG2	10735	broad.mit.edu	37	X	123227933	123227933	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:123227933C>T	uc004etz.3	+	31	3872	c.3533C>T	c.(3532-3534)TCA>TTA	p.S1178L	STAG2_uc004eua.2_Missense_Mutation_p.S1215L|STAG2_uc004eub.2_Missense_Mutation_p.S1178L|STAG2_uc004euc.2_Missense_Mutation_p.S1215L|STAG2_uc004eud.2_Missense_Mutation_p.S1178L|STAG2_uc004eue.2_Missense_Mutation_p.S1178L	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	1178					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						ATGATGTCCTCAGAAGGGAGG	0.373													111	11					0	0	0.003610	0	0
ODZ1	10178	broad.mit.edu	37	X	123554600	123554600	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:123554600G>A	uc004euj.2	-	24	4586	c.4522C>T	c.(4522-4524)CTC>TTC	p.L1508F	ODZ1_uc011muj.1_Missense_Mutation_p.L1514F|ODZ1_uc010nqy.2_Missense_Mutation_p.L1515F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1508	Extracellular (Potential).|NHL 5.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GCCACATAGAGGGTTCCATCA	0.473													85	16					0	0	0.003610	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218338	130218338	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:130218338C>T	uc004evz.2	+	5	1050	c.705C>T	c.(703-705)ATC>ATT	p.I235I	ARHGAP36_uc004ewa.2_Silent_p.I223I|ARHGAP36_uc004ewb.2_Silent_p.I204I|ARHGAP36_uc004ewc.2_Silent_p.I99I	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	235	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CGAAACAAATCCCCCAGGTTG	0.458													33	7					0	0	0.003271	0	0
IGSF1	3547	broad.mit.edu	37	X	130412036	130412036	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:130412036C>T	uc004ewd.2	-	13	2352	c.2114G>A	c.(2113-2115)GGA>GAA	p.G705E	IGSF1_uc004ewe.3_Missense_Mutation_p.G699E|IGSF1_uc004ewf.2_Missense_Mutation_p.G685E	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	705	Extracellular (Potential).|Ig-like C2-type 7.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGCCAGCCATCCTTTGCACCG	0.517													73	13					0	0	0.003610	0	0
ATP11C	286410	broad.mit.edu	37	X	138878601	138878601	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:138878601G>A	uc004faz.2	-	12	1145	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.S349L	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	349	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AACCATAAATGATAGGAAGTC	0.333													43	12					0	0	0.003610	0	0
GABRE	2564	broad.mit.edu	37	X	151124192	151124193	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:151124192_151124193GG>AA	uc004ffi.2	-	7	978_979	c.924_925CC>TT	c.(922-927)GCCCGG>GCTTGG	p.R309W	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	309					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGAGGTCCGGGCTGGAGCAG	0.525													83	16					0	0	0.004672	0	0
TMEM187	8269	broad.mit.edu	37	X	153247741	153247741	+	Silent	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:153247741C>T	uc004fjq.2	+	2	762	c.228C>T	c.(226-228)GGC>GGT	p.G76G	hsa-mir-3202-2|MI0014253_5'Flank	NM_003492	NP_003483	Q14656	TM187_HUMAN	transmembrane protein 187	76						integral to membrane|transport vesicle					0	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACAGGGGCGGCGCGATGGGGC	0.697													43	8					0	0	0.007835	0	0
ZFY	7544	broad.mit.edu	37	Y	2847288	2847288	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrY:2847288C>T	uc004fqj.2	+	8	1981	c.1660C>T	c.(1660-1662)CGA>TGA	p.R554*	ZFY_uc011nan.1_Nonsense_Mutation_p.R363*|ZFY_uc010nwe.2_Nonsense_Mutation_p.R477*	NM_003411	NP_003402	P08048	ZFY_HUMAN	zinc finger protein, Y-linked isoform 1	554	C2H2-type 5.			R -> S (in Ref. 7).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAAGGTTTCCGACACCCGTC	0.473													39	14					0	0	0.008740	0	0
C10orf54	64115	broad.mit.edu	37	10	73521670	73521672	+	In_Frame_Del	DEL	CAT	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr10:73521670_73521672delCAT	uc001jsd.2	-	2	335_337	c.194_196delATG	c.(193-198)GATGTG>GTG	p.D65del	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_5'UTR|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_In_Frame_Del_p.D65del	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	65	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TAGAAGGTCACATCGTGCCCTTT	0.626													30	29	---	---	---	---					
CBL	867	broad.mit.edu	37	11	119148871	119148874	+	Splice_Site	DEL	CAAA	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr11:119148871_119148874delCAAA	uc001pwe.2	+	8	1234	c.1096_splice	c.e8-2	p.E366_splice		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral						epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		TTTTTTTAATCAAAGGAACAATAT	0.289									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				19	4	---	---	---	---					
ARID2	196528	broad.mit.edu	37	12	46246254	46246254	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:46246254delG	uc001ros.1	+	15	4348	c.4348delG	c.(4348-4350)GGAfs	p.G1450fs	ARID2_uc001ror.2_Frame_Shift_Del_p.G1450fs|ARID2_uc009zkg.1_Frame_Shift_Del_p.G906fs|ARID2_uc009zkh.1_Frame_Shift_Del_p.G1077fs|ARID2_uc001rou.1_Frame_Shift_Del_p.G784fs	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1450					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTTGCTTAATGGACCTCTAGC	0.428													37	68	---	---	---	---					
KRT5	3852	broad.mit.edu	37	12	52908747	52908749	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr12:52908747_52908749delGGA	uc001san.2	-	9	1913_1915	c.1750_1752delTCC	c.(1750-1752)TCCdel	p.S584del		NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	584	Tail.|Ser-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGCTCTTCCGGGAGGAGGAGGTG	0.591													25	65	---	---	---	---					
EVPL	2125	broad.mit.edu	37	17	74004880	74004895	+	Frame_Shift_Del	DEL	TCCAGCTTGACCACTT	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr17:74004880_74004895delTCCAGCTTGACCACTT	uc002jqi.2	-	22	4619_4634	c.4391_4406delAAGTGGTCAAGCTGGA	c.(4390-4407)GAAGTGGTCAAGCTGGAGfs	p.E1464fs	EVPL_uc010wss.1_Frame_Shift_Del_p.E1486fs|EVPL_uc010wst.1_Frame_Shift_Del_p.E934fs	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1464_1469	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CGGGTCCTTCTCCAGCTTGACCACTTCCTCCATGAT	0.611													28	163	---	---	---	---					
ZNF148	7707	broad.mit.edu	37	3	124997999	124998000	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chr3:124997999_124998000delAT	uc003ehx.3	-	6	1037_1038	c.551_552delAT	c.(550-552)TATfs	p.Y184fs	SLC12A8_uc003ehw.3_Frame_Shift_Del_p.I8fs|ZNF148_uc003ehz.3_Frame_Shift_Del_p.Y184fs|ZNF148_uc010hsa.2_Frame_Shift_Del_p.Y184fs|ZNF148_uc003eia.3_Frame_Shift_Del_p.Y184fs|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	184	C2H2-type 1.				cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TCTGTAAGTGATAGTTCGTTCT	0.356													44	100	---	---	---	---					
FAM58A	92002	broad.mit.edu	37	X	152858094	152858094	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A1IC-06A-11D-A197-08	TCGA-DA-A1IC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6920fd0a-82bb-43a4-bc78-c29c42961148	759ea550-cc56-4f70-bd66-dceaffbd4b0d	g.chrX:152858094delT	uc010nug.2	-	3	444	c.341delA	c.(340-342)GACfs	p.D114fs				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;	176					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ATGGTAGCTGTCCCGCAGCAG	0.677													17	7	---	---	---	---					
