Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC2A7	155184	broad.mit.edu	37	1	9074860	9074860	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:9074860C>T	uc009vmo.1	-	7	783	c.783G>A	c.(781-783)CGG>CGA	p.R261R		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	261	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		CGCGCTCGGCCCGGGCCTCCG	0.697000													6	6					0	0	0.000157383	0	0
CSMD2	114784	broad.mit.edu	37	1	34180213	34180213	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:34180213C>T	uc001bxn.1	-	21	3289	c.3260G>A	c.(3259-3261)TGG>TAG	p.W1087*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W1127*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1087	Sushi 6.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGCGAGCTCCACAGGCGCCG	0.592000													54	139					0	0	0.000781405	0	0
GLIS1	148979	broad.mit.edu	37	1	54059973	54059973	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:54059973G>C	uc001cvr.1	-	3	1170	c.603C>G	c.(601-603)GAC>GAG	p.D201E		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	201	C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTGCACAGCAGTCCACCCAGC	0.682000													6	19					0	0	0.000157383	0	0
LEPR	3953	broad.mit.edu	37	1	66083654	66083654	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:66083654C>T	uc001dci.2	+	16	2422	c.2220C>T	c.(2218-2220)ATC>ATT	p.I740I	LEPR_uc001dcg.2_Silent_p.I740I|LEPR_uc001dch.2_Silent_p.I740I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I740I|LEPR_uc001dck.2_Silent_p.I740I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	740	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAGTAAATATCGTGCAGTCAC	0.303000													17	24					0	0	0.000422831	0	0
VCAM1	7412	broad.mit.edu	37	1	101190273	101190273	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:101190273C>T	uc001dti.2	+	4	875	c.755C>T	c.(754-756)CCA>CTA	p.P252L	VCAM1_uc001dtj.2_Missense_Mutation_p.P252L|VCAM1_uc010ouj.1_Missense_Mutation_p.P190L	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	252	Ig-like C2-type 3.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GAGGGTCTACCAGCTCCAGAG	0.433000													19	24					0	0	0.00074312	0	0
VAV3	10451	broad.mit.edu	37	1	108315413	108315413	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:108315413C>T	uc001dvk.1	-	5	553	c.499G>A	c.(499-501)GAT>AAT	p.D167N	VAV3_uc010ouw.1_Missense_Mutation_p.D167N|VAV3_uc001dvl.1_5'UTR|VAV3_uc010oux.1_Missense_Mutation_p.D167N	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	167					angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CCACCTTCATCTTCCCCATAA	0.358000													30	49					0	0	0.000692331	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			39	97					0	0	0.00128727	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													4	113					0	0	0.00024832	0	0
RPRD2	23248	broad.mit.edu	37	1	150429989	150429989	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:150429989C>T	uc009wlr.2	+	8	1297	c.1096C>T	c.(1096-1098)CGT>TGT	p.R366C	RPRD2_uc010pcc.1_Missense_Mutation_p.R340C|RPRD2_uc001eup.3_Missense_Mutation_p.R340C	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	366							protein binding			ovary(1)	1						GACAGATAATCGTGATGTGGA	0.428000													58	148					0	0	0.000781405	0	0
LCE1C	353133	broad.mit.edu	37	1	152777800	152777800	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:152777800C>T	uc001fap.1	-	2	206	c.155G>A	c.(154-156)TGT>TAT	p.C52Y		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	52	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTGGAGCCACAGCAGCCTCC	0.493000													20	50					0	0	0.00188189	0	0
MEF2D	4209	broad.mit.edu	37	1	156444933	156444933	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:156444933G>A	uc001fpc.2	-	9	1363	c.973C>T	c.(973-975)CCC>TCC	p.P325S	MEF2D_uc001fpb.2_Missense_Mutation_p.P318S|MEF2D_uc001fpd.2_Missense_Mutation_p.P318S|MEF2D_uc001fpe.1_Missense_Mutation_p.P325S|MEF2D_uc009wsa.2_Intron	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	325					apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GAAGAGAAGGGGAGGCCCTGG	0.562000													29	54					0	0	0.001512	0	0
F5	2153	broad.mit.edu	37	1	169511711	169511711	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:169511711C>T	uc001ggg.1	-	13	2762	c.2617G>A	c.(2617-2619)GAT>AAT	p.D873N		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	873	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GCTGCTTGATCTCTTTCTACC	0.463000													55	110					0	0	0.000781405	0	0
FASLG	356	broad.mit.edu	37	1	172628641	172628641	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:172628641G>A	uc001gis.2	+	1	457	c.300G>A	c.(298-300)GGG>GGA	p.G100G	FASLG_uc001git.2_Silent_p.G100G	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	100	Helical; Signal-anchor for type II membrane protein; (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TGGGCCTGGGGATGTTTCAGC	0.532000													7	21					0	0	0.000274275	0	0
KLHL20	27252	broad.mit.edu	37	1	173703100	173703100	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:173703100C>T	uc001gjc.2	+	3	451	c.272C>T	c.(271-273)CCC>CTC	p.P91L	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_Missense_Mutation_p.P73L|KLHL20_uc001gjd.2_Missense_Mutation_p.P91L	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	91	BTB.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						GCCTGTAGTCCCTACTTCCGA	0.478000													24	48					0	0	0.00047179	0	0
CFHR1	3078	broad.mit.edu	37	1	196801077	196801077	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:196801077G>A	uc001gtn.2	+	6	1055	c.941G>A	c.(940-942)CGA>CAA	p.R314Q	CFHR1_uc001gtm.2_Missense_Mutation_p.R218Q	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	314	Sushi 5.				complement activation	extracellular space					0						CACACATTGCGAACAACATGT	0.383000													14	41					0	0	0.000422831	0	0
CFHR4	10877	broad.mit.edu	37	1	196887394	196887394	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:196887394G>A	uc001gto.2	+	6	923	c.854G>A	c.(853-855)GGA>GAA	p.G285E	CFHR4_uc009wyy.2_Missense_Mutation_p.G531E|CFHR4_uc001gtp.2_Missense_Mutation_p.G532E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	285	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CAGTTAAAAGGAAAAAGTGAC	0.279000													21	35					0	0	0.00188189	0	0
C1orf107	27042	broad.mit.edu	37	1	210001462	210001462	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:210001462A>T	uc001hhr.1	+	1	130	c.54A>T	c.(52-54)AAA>AAT	p.K18N	C1orf107_uc009xcu.1_5'UTR	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	18					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		CCCTAACTAAAAAGCAGAAGA	0.547000											OREG0014221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	47					0	0	0.000878237	0	0
DIP2C	22982	broad.mit.edu	37	10	409183	409183	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:409183T>C	uc001ifp.2	-	21	2636	c.2546A>G	c.(2545-2547)GAC>GGC	p.D849G	DIP2C_uc009xhi.1_Missense_Mutation_p.D235G|DIP2C_uc010pzz.1_Missense_Mutation_p.D170G	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	849						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TTCCGTGGAGTCAGGCCTCTG	0.627000													7	19					0	0	0.000157383	0	0
LOC387646	387646	broad.mit.edu	37	10	27538044	27538044	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:27538044C>T	uc001its.2	-	1	3192	c.1349G>A	c.(1348-1350)CGA>CAA	p.R450Q		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						AGTCAGTTTTCGATGCAGAGT	0.498000													56	85					0	0	0.000781405	0	0
ALOX5	240	broad.mit.edu	37	10	45878120	45878120	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:45878120G>A	uc001jce.2	+	2	439	c.340G>A	c.(340-342)GAT>AAT	p.D114N	ALOX5_uc009xmt.2_Missense_Mutation_p.D114N|ALOX5_uc010qfg.1_Missense_Mutation_p.D114N	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	114	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	TGTCCTGAGGGATGGACGCGG	0.582000													4	13					0	0	0.00024832	0	0
A1CF	29974	broad.mit.edu	37	10	52603882	52603882	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:52603882C>T	uc001jjj.2	-	4	288	c.100G>A	c.(100-102)GAA>AAA	p.E34K	A1CF_uc010qhn.1_Missense_Mutation_p.E42K|A1CF_uc001jji.2_Missense_Mutation_p.E34K|A1CF_uc001jjh.2_Missense_Mutation_p.E42K|A1CF_uc010qho.1_Missense_Mutation_p.E42K|A1CF_uc009xov.2_Missense_Mutation_p.E34K|A1CF_uc001jjk.1_Missense_Mutation_p.E34K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	34					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TGTCCATTTTCCTGCAAATCC	0.413000													28	45					0	0	0.00209593	0	0
CTNNA3	29119	broad.mit.edu	37	10	67680226	67680226	+	Missense_Mutation	SNP	C	T	T	rs138237676		TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:67680226C>T	uc009xpn.1	-	18	2673	c.2550G>A	c.(2548-2550)ATG>ATA	p.M850I	CTNNA3_uc001jmw.2_Missense_Mutation_p.M850I	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	850					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CAGGAGCCTTCATTCTCCACA	0.478000													44	73					0	0	0.000781405	0	0
SORCS3	22986	broad.mit.edu	37	10	107007001	107007001	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:107007001C>T	uc001kyi.1	+	22	3244	c.3017C>T	c.(3016-3018)TCA>TTA	p.S1006L	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1006	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAGCTTTTATCATTCTCTCCT	0.458000													15	22					0	0	0.000566183	0	0
C10orf96	374355	broad.mit.edu	37	10	118084575	118084575	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:118084575G>A	uc001lck.2	+	2	303	c.52G>A	c.(52-54)GAG>AAG	p.E18K		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	18	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		GCATCAGGCGGAGGAGAGTCG	0.517000													12	33					0	0	0.000422831	0	0
DMBT1	1755	broad.mit.edu	37	10	124395534	124395534	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr10:124395534T>A	uc001lgk.1	+	50	6295	c.6189T>A	c.(6187-6189)TAT>TAA	p.Y2063*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.Y2053*|DMBT1_uc001lgm.1_Nonsense_Mutation_p.Y1435*|DMBT1_uc009xzz.1_Nonsense_Mutation_p.Y2062*|DMBT1_uc010qtx.1_Nonsense_Mutation_p.Y783*|DMBT1_uc009yab.1_Nonsense_Mutation_p.Y766*|DMBT1_uc009yac.1_Nonsense_Mutation_p.Y357*	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2063	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ACTATGATTATATTGAAGTTT	0.512000													19	42					0	0	0.00188189	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443553	5443553	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:5443553C>T	uc010qzd.1	+	1	123	c.123C>T	c.(121-123)ATC>ATT	p.I41I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCATCTCCATCATGGGCAATA	0.547000													37	110					0	0	0.00111076	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17191054	17191054	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:17191054G>A	uc001mmq.3	-	1	301	c.235C>T	c.(235-237)CCT>TCT	p.P79S	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Missense_Mutation_p.P79S|PIK3C2A_uc009ygv.1_Missense_Mutation_p.P79S	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	79	Interaction with clathrin.				cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TCTGATTCAGGAAACACCATG	0.393000													37	95					0	0	0.000692331	0	0
ACP2	53	broad.mit.edu	37	11	47264422	47264422	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:47264422C>T	uc001nei.2	-	10	1107	c.990G>A	c.(988-990)CGG>CGA	p.R330R	ACP2_uc010rhe.1_Silent_p.R302R|ACP2_uc009ylj.2_Silent_p.R258R|ACP2_uc010rhf.1_Silent_p.R298R|ACP2_uc010rhg.1_Silent_p.R267R|ACP2_uc010rhh.1_Silent_p.R143R|ACP2_uc010rhi.1_Silent_p.R143R|ACP2_uc009ylk.2_Silent_p.R297R	NM_001610	NP_001601	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal isoform 1	330	Lumenal (Potential).					integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			ovary(1)	1						CACTCTCGTTCCGAAAGTACA	0.642000													9	19					0	0	0.000673444	0	0
OR5B3	441608	broad.mit.edu	37	11	58170715	58170715	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:58170715G>A	uc010rkf.1	-	1	168	c.168C>T	c.(166-168)CCC>CCT	p.P56P		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AAAAGTACATGGGATTGTGGA	0.413000													20	40					0	0	0.00121646	0	0
SLC22A9	114571	broad.mit.edu	37	11	63177310	63177310	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:63177310G>A	uc001nww.2	+	10	1906	c.1638G>A	c.(1636-1638)CCG>CCA	p.P546P	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	546	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AAGAGGATCCGAGAGTGGAAG	0.413000													10	25					0	0	0.000978159	0	0
C2CD3	26005	broad.mit.edu	37	11	73814461	73814461	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:73814461G>A	uc001ouu.2	-	14	2522	c.2295C>T	c.(2293-2295)CTC>CTT	p.L765L		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	765						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TTCGGTTGGGGAGCACCAAGT	0.438000													12	39					0	0	0.00185496	0	0
MMP27	64066	broad.mit.edu	37	11	102575479	102575479	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:102575479C>T	uc001phd.1	-	2	153	c.130G>A	c.(130-132)GAA>AAA	p.E44K		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	44					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CCTTCTATTTCAAGAGAGTAG	0.373000													6	19					0	0	0.00116845	0	0
TBCEL	219899	broad.mit.edu	37	11	120957608	120957608	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:120957608C>T	uc009zay.2	+	8	1156	c.1078C>T	c.(1078-1080)CGT>TGT	p.R360C	TBCEL_uc001pxo.2_Missense_Mutation_p.R360C|TBCEL_uc001pxp.2_Missense_Mutation_p.R216C|TBCEL_uc001pxq.2_RNA	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	360	Ubiquitin-like.|Potential.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		AATGAGCATTCGTCTGGACCA	0.433000													5	16					0	0	0.00116845	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130284706	130284707	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr11:130284706_130284707GG>AA	uc001qgg.3	-	5	1643_1644	c.1285_1286CC>TT	c.(1285-1287)CCT>TTT	p.P429F	ADAMTS8_uc001qgf.2_5'Flank	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	429	Peptidase M12B.			YLTELLDGGHGDCLLDAPAAALPLPTGL -> FSGCHLQGW IHFKYLCKCVSELKCDLMP (in Ref. 3; AAF25806).	negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		GGCCGCAGCAGGGGCATCCAGG	0.644000													8	16					0	0	6.4e-05	0	0
ZNF384	171017	broad.mit.edu	37	12	6781567	6781567	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:6781567G>A	uc010sfh.1	-	8	1251	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F	ZNF384_uc001qpz.2_Intron|ZNF384_uc001qqa.2_Intron|ZNF384_uc001qqb.2_Intron|ZNF384_uc001qqc.2_Intron|ZNF384_uc001qqd.2_Intron|ZNF384_uc001qqe.2_Intron	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	348	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						CTGGCAGTAGGAACAGTTGTA	0.652000			T	EWSR1|TAF15 	ALL								15	32					0	0	0.000308642	0	0
DUSP16	80824	broad.mit.edu	37	12	12629826	12629826	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:12629826C>T	uc001rao.1	-	7	2571	c.1939G>A	c.(1939-1941)GGG>AGG	p.G647R	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.G499R	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	647					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		CCCACTTTCCCCAGCTCTTCC	0.453000													48	134					0	0	0.000781405	0	0
C12orf77	196415	broad.mit.edu	37	12	25149189	25149189	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:25149189G>A	uc001rgf.2	-	2	293	c.88C>T	c.(88-90)CTG>TTG	p.L30L		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	30											0						AGTGGATCCAGAATTTGAATA	0.438000													20	73					0	0	0.00188189	0	0
ARID2	196528	broad.mit.edu	37	12	46123826	46123827	+	Splice_Site	DNP	GG	AA	AA			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:46123826_46123827GG>AA	uc001ros.1	+	2	93	c.93_splice	c.e2-1	p.G31_splice	ARID2_uc001ror.2_Splice_Site_p.G31_splice|LOC400027_uc001roq.2_5'Flank	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		CTCTCCCGCAGGTCGCCTTTTA	0.658000													10	6					0	0	6.4e-05	0	0
ARID2	196528	broad.mit.edu	37	12	46215264	46215264	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:46215264C>T	uc001ros.1	+	6	699	c.699C>T	c.(697-699)TTC>TTT	p.F233F	ARID2_uc001ror.2_Silent_p.F233F	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	233					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ATAGAGACTTCGTTAAGGTAA	0.284000													41	36					0	0	0.000781405	0	0
NFE2	4778	broad.mit.edu	37	12	54686799	54686799	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:54686799C>T	uc009znk.2	-	2	991	c.481G>A	c.(481-483)GAG>AAG	p.E161K	NFE2_uc001sfq.2_Missense_Mutation_p.E161K|NFE2_uc001sfr.3_Missense_Mutation_p.E161K|NFE2_uc009znl.2_Missense_Mutation_p.E161K	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	161	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						TCTGTCCCCTCCAGCTCAAGA	0.562000													31	38					0	0	0.00178596	0	0
RASSF3	283349	broad.mit.edu	37	12	65088620	65088621	+	Silent	DNP	CC	TT	TT			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:65088620_65088621CC>TT	uc001ssd.2	+	5	765_766	c.645_646CC>TT	c.(643-648)AACCTG>AATTTG	p.215_216NL>NL	RASSF3_uc009zqn.2_RNA|RASSF3_uc001sse.2_Silent_p.145_146NL>NL	NM_178169	NP_835463	Q86WH2	RASF3_HUMAN	Ras association (RalGDS/AF-6) domain family	215_216	SARAH.				signal transduction	cytoplasm|microtubule	identical protein binding				0			Lung(2;0.00133)|LUAD - Lung adenocarcinoma(6;0.0665)|LUSC - Lung squamous cell carcinoma(43;0.132)	GBM - Glioblastoma multiforme(28;0.0611)		AGCTGCAGAACCTGAAGAGGCG	0.540000													18	15					0	0	6.4e-05	0	0
KCNC2	3747	broad.mit.edu	37	12	75445031	75445031	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:75445031C>T	uc001sxg.1	-	3	1298	c.754G>A	c.(754-756)GAA>AAA	p.E252K	KCNC2_uc009zry.2_Missense_Mutation_p.E252K|KCNC2_uc001sxe.2_Missense_Mutation_p.E252K|KCNC2_uc001sxf.2_Missense_Mutation_p.E252K|KCNC2_uc010stw.1_Missense_Mutation_p.E252K	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	252					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						TTGAAAGCTTCATGTGTTTCC	0.343000													13	13					0	0	0.00136819	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85449578	85449578	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr12:85449578G>A	uc001tac.2	+	8	1118	c.1007G>A	c.(1006-1008)CGA>CAA	p.R336Q	LRRIQ1_uc001tab.1_Missense_Mutation_p.R336Q|LRRIQ1_uc001taa.1_Missense_Mutation_p.R311Q	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	336	Glu-rich.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		gaagaaaatcgaaaaagatta	0.050000													11	6					0	0	0.000673444	0	0
PARP4	143	broad.mit.edu	37	13	25008631	25008631	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:25008631G>A	uc001upl.2	-	31	4754	c.4648C>T	c.(4648-4650)CTG>TTG	p.L1550L		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1550				L -> P (in Ref. 1; AAD47250, 2; AAC62491 and 3; BAA11494).	cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AGAAAGCACAGGATACTGTCA	0.403000													17	45					0	0	0.000422831	0	0
DCLK1	9201	broad.mit.edu	37	13	36396997	36396997	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:36396997C>T	uc001uvf.2	-	11	1656	c.1423G>A	c.(1423-1425)GAT>AAT	p.D475N	DCLK1_uc001uve.3_Missense_Mutation_p.D168N|DCLK1_uc010teh.1_Missense_Mutation_p.D168N|DCLK1_uc010abk.2_Intron	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	475	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GTAATGGCATCAAAAAGGTCT	0.522000													19	45					0	0	0.00188189	0	0
AKAP11	11215	broad.mit.edu	37	13	42875110	42875110	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:42875110C>T	uc001uys.1	+	8	2403	c.2228C>T	c.(2227-2229)TCC>TTC	p.S743F		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	743					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		GTCACGTTTTCCCCTTCTTTT	0.418000													11	40					0	0	0.00185496	0	0
DACH1	1602	broad.mit.edu	37	13	72063185	72063185	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:72063185G>A	uc010thn.1	-	8	2089	c.1666C>T	c.(1666-1668)CCT>TCT	p.P556S	DACH1_uc010tho.1_Missense_Mutation_p.P408S|DACH1_uc010thp.1_Missense_Mutation_p.P354S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	608					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AACAGAAAAGGAGATGGAAAA	0.478000													49	117					0	0	0.000781405	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488000													3	61					0	0	0.00116845	0	0
ATP11A	23250	broad.mit.edu	37	13	113485797	113485797	+	Missense_Mutation	SNP	G	A	A	rs141227366	byFrequency	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:113485797G>A	uc001vsi.3	+	13	1418	c.1330G>A	c.(1330-1332)GGG>AGG	p.G444R	ATP11A_uc001vsj.3_Missense_Mutation_p.G444R|ATP11A_uc001vsm.1_Missense_Mutation_p.G320R	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	444	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				CATCTGCAACGGGCAGGTCCT	0.587000													16	23					0	0	0.000958276	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215763	20215763	+	Silent	SNP	T	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr14:20215763T>G	uc010tkt.1	+	1	177	c.177T>G	c.(175-177)CCT>CCG	p.P59P		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCAATCTCCTATGTATTATT	0.413000													31	183					0	0	0.00283554	0	0
WDHD1	11169	broad.mit.edu	37	14	55475343	55475343	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr14:55475343G>A	uc001xbm.1	-	5	514	c.436C>T	c.(436-438)CCT>TCT	p.P146S	WDHD1_uc001xbn.1_Missense_Mutation_p.P23S	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	146	WD 4.					cytoplasm|nucleoplasm	DNA binding			skin(1)	1						ATGTCCTTAGGATCAAAGGAA	0.318000													35	76					0	0	0.00170553	0	0
KCNH5	27133	broad.mit.edu	37	14	63316439	63316439	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr14:63316439G>A	uc001xfx.2	-	8	1552	c.1501C>T	c.(1501-1503)CTT>TTT	p.L501F	KCNH5_uc001xfy.2_Missense_Mutation_p.L501F|KCNH5_uc001xfz.1_Missense_Mutation_p.L443F	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	501	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CGCTCACTAAGGCCTTTTGGG	0.378000													24	52					0	0	0.00047179	0	0
ADAM6	8755	broad.mit.edu	37	14	106068010	106068010	+	RNA	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr14:106068010G>A	uc010tyt.1	-	3649		c.62647C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Missense_Mutation_p.P33L|uc001yrx.1_5'UTR|uc001yrv.1_5'Flank|uc001yru.2_5'Flank|uc010axq.1_5'Flank					Parts of antibodies, mostly variable regions.												0						GGCATTGGAGGGAATGTTTTT	0.627000													3	11					0	0	0.000602214	0	0
ADAM6	8755	broad.mit.edu	37	14	106518841	106518841	+	RNA	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr14:106518841G>A	uc010tyt.1	-	1629		c.32697C>T								Parts of antibodies, mostly variable regions.												0						ACCCAGCTCAGCCCCAATTCC	0.488000													59	123					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	20488779	20488779	+	RNA	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:20488779G>A	uc001ytf.1	+	2		c.262G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		CAAGATTTTGGGAGAGACCTC	0.413000													10	123					0	0	0.00136819	0	0
HERC2	8924	broad.mit.edu	37	15	28408339	28408339	+	Silent	SNP	C	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:28408339C>A	uc001zbj.2	-	69	10753	c.10647G>T	c.(10645-10647)GTG>GTT	p.V3549V		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3549					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GCAGGTCTACCACCACACGAG	0.597000													23	47					3.5997e-14	2.17347e-13	0.00229938	1	0
CDAN1	146059	broad.mit.edu	37	15	43028535	43028535	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:43028535G>A	uc001zql.2	-	2	651	c.534C>T	c.(532-534)TTC>TTT	p.F178F	CDAN1_uc001zqk.2_5'Flank|CDAN1_uc010bcx.1_5'Flank|uc001zqm.2_5'Flank	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	178						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		CTACGGGAGGGAACTCCTCCA	0.667000													11	14					0	0	0.000978159	0	0
KIAA1370	56204	broad.mit.edu	37	15	52970206	52970206	+	Silent	SNP	G	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:52970206G>T	uc002acg.3	-	2	166	c.13C>A	c.(13-15)CGA>AGA	p.R5R	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_5'UTR	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	5											0				all cancers(107;0.0803)		CATTTACCTCGGTCTGGCTTC	0.453000													25	51					6.38683e-12	3.83812e-11	0.001512	1	0
SCAMP5	192683	broad.mit.edu	37	15	75309008	75309008	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:75309008T>G	uc002azk.1	+	4	373	c.211T>G	c.(211-213)TTT>GTT	p.F71V	SCAMP5_uc002azl.1_Missense_Mutation_p.F71V|SCAMP5_uc002azm.1_Missense_Mutation_p.F71V|SCAMP5_uc002azn.1_Missense_Mutation_p.F71V|SCAMP5_uc010uly.1_Intron	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	71	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						AGCCACCAACTTTGGCCTCGC	0.597000													19	57					0	0	0.000958276	0	0
CSPG4	1464	broad.mit.edu	37	15	75981813	75981813	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:75981813G>A	uc002baw.2	-	3	1686	c.1593C>T	c.(1591-1593)CCC>CCT	p.P531P		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	531	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GAAGGCATGAGGGCATGGGCA	0.617000													13	16					0	0	0.00136819	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100591818	100591818	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr15:100591818G>A	uc002bvv.1	-	17	2493	c.2414C>T	c.(2413-2415)ACC>ATC	p.T805I		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	805	TSP type-1 2.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GCCGCTGTGGGTCCAGATGAA	0.517000													47	110					0	0	0.000781405	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962005	1962005	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr16:1962005G>A	uc002cnf.2	-	2	522	c.522C>T	c.(520-522)CGC>CGT	p.R174R		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	174											0						AGGCCAGGGCGCGGAAGCTGG	0.711000													8	4					0	0	0.000274275	0	0
OR1F1	4992	broad.mit.edu	37	16	3254944	3254944	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr16:3254944G>A	uc010uwu.1	+	1	698	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCACAAAGGGAAGGTGGAAA	0.512000													55	128					0	0	0.000781405	0	0
NOMO1	23420	broad.mit.edu	37	16	14973913	14973914	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr16:14973913_14973914CC>TT	uc002dcv.2	+	24	2865_2866	c.2799_2800CC>TT	c.(2797-2802)TTCCGG>TTTTGG	p.R934W		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	934	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						TGAAGGAGTTCCGGTTTGAGCC	0.525000													31	114					0	0	6.4e-05	0	0
USP31	57478	broad.mit.edu	37	16	23080670	23080670	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr16:23080670G>A	uc002dll.2	-	16	2756	c.2756C>T	c.(2755-2757)TCT>TTT	p.S919F	USP31_uc002dlk.2_Missense_Mutation_p.S191F|USP31_uc010vca.1_Missense_Mutation_p.S222F|USP31_uc010bxm.2_Missense_Mutation_p.S207F	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	919	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GTAACTGCTAGAAAGGTTCCG	0.547000													17	44					0	0	0.00074312	0	0
OR1A1	8383	broad.mit.edu	37	17	3119823	3119823	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:3119823C>T	uc010vrc.1	+	1	909	c.909C>T	c.(907-909)TTC>TTT	p.F303F		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGAAACTCTTCAACAAGAGAA	0.408000													19	46					0	0	0.00121646	0	0
ITGAE	3682	broad.mit.edu	37	17	3656589	3656589	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:3656589C>T	uc002fwo.3	-	14	1762	c.1663G>A	c.(1663-1665)GAG>AAG	p.E555K		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	555	FG-GAP 5.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CCCACCTGCTCGCTGAGACGG	0.572000													4	12					0	0	0.00024832	0	0
NLRP1	22861	broad.mit.edu	37	17	5433872	5433872	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:5433872G>A	uc002gci.2	-	12	4004	c.3449C>T	c.(3448-3450)CCT>CTT	p.P1150L	NLRP1_uc002gcg.1_Missense_Mutation_p.P1154L|NLRP1_uc002gck.2_Missense_Mutation_p.P1150L|NLRP1_uc002gcj.2_Missense_Mutation_p.P1120L|NLRP1_uc002gcl.2_Missense_Mutation_p.P1120L|NLRP1_uc002gch.3_Missense_Mutation_p.P1150L|NLRP1_uc010clh.2_Missense_Mutation_p.P1150L	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1150					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GTCCAGCAGAGGCCCTGCCAC	0.547000													6	51					0	0	0.00116845	0	0
DNAH9	1770	broad.mit.edu	37	17	11711083	11711084	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:11711083_11711084GG>AA	uc002gne.2	+	44	8523_8524	c.8455_8456GG>AA	c.(8455-8457)GGA>AAA	p.G2819K	DNAH9_uc010coo.2_Missense_Mutation_p.G2113K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2819	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GTCCCCGCGGGGAAATGCTCTG	0.520000													6	58					0	0	6.4e-05	0	0
DNAH9	1770	broad.mit.edu	37	17	11790183	11790183	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:11790183C>T	uc002gne.2	+	57	11081	c.11013C>T	c.(11011-11013)GCC>GCT	p.A3671A	DNAH9_uc010coo.2_Silent_p.A2965A|DNAH9_uc002gnf.2_5'UTR|DNAH9_uc010vvh.1_Silent_p.A24A	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3671	Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCAACGAGGCCCGAGAGCACT	0.522000													15	20					0	0	0.000422831	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305619	39305619	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:39305619G>T	uc002hwb.2	-	1	436	c.401C>A	c.(400-402)TCT>TAT	p.S134Y		NM_033188	NP_149445	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	139	24.|27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ttcacagcaagaggggtggca	0.313000													4	15					0.00024832	0.00147832	0.00024832	1	0
BPTF	2186	broad.mit.edu	37	17	65916199	65916199	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:65916199C>T	uc002jgf.2	+	13	5558	c.5497C>T	c.(5497-5499)CGA>TGA	p.R1833*	BPTF_uc002jge.2_Nonsense_Mutation_p.R1959*	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1959					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TTATGGCATTCGATCTGAATA	0.318000													37	89					0	0	0.00111076	0	0
RPTOR	57521	broad.mit.edu	37	17	78599568	78599568	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr17:78599568C>T	uc002jyt.1	+	2	1045	c.240C>T	c.(238-240)CCC>CCT	p.P80P	RPTOR_uc002jys.2_Silent_p.P80P|RPTOR_uc010wuf.1_5'UTR|RPTOR_uc010wug.1_Silent_p.P80P	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	80					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						AGACCACGCCCTGTGCACGCT	0.567000													39	48					0	0	0.00285205	0	0
DTNA	1837	broad.mit.edu	37	18	32398137	32398137	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr18:32398137C>T	uc010dmn.1	+	7	720	c.719C>T	c.(718-720)CCG>CTG	p.P240L	DTNA_uc002kxu.2_Missense_Mutation_p.P240L|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Missense_Mutation_p.P240L|DTNA_uc002kxw.2_Missense_Mutation_p.P240L|DTNA_uc002kxx.2_Missense_Mutation_p.P240L|DTNA_uc010dmj.2_Missense_Mutation_p.P240L|DTNA_uc002kxz.2_Missense_Mutation_p.P240L|DTNA_uc002kxy.2_Missense_Mutation_p.P240L|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.P240L|DTNA_uc002kyb.3_Missense_Mutation_p.P240L|DTNA_uc010dmm.2_Missense_Mutation_p.P240L|DTNA_uc010xby.1_5'UTR|DTNA_uc010dmo.2_5'Flank|DTNA_uc002kyd.3_5'Flank|DTNA_uc010xbz.1_5'Flank|DTNA_uc010xca.1_5'Flank|DTNA_uc002kye.2_5'Flank	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	240	Interaction with MAGEE1 (By similarity).|ZZ-type.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GTCTTCCATCCGGTTGAGTGT	0.448000													24	64					0	0	0.000878237	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566726	45566726	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr18:45566726G>A	uc002lda.2	-	1	769	c.753C>T	c.(751-753)TTC>TTT	p.F251F	ZBTB7C_uc002ldb.2_Silent_p.F251F|ZBTB7C_uc010dnu.2_Silent_p.F260F|ZBTB7C_uc010dnv.2_Silent_p.F273F|ZBTB7C_uc010dnw.2_Silent_p.F251F|ZBTB7C_uc010dnx.1_Silent_p.F251F|ZBTB7C_uc010dny.1_Silent_p.F251F|ZBTB7C_uc010dnz.1_Silent_p.F273F|ZBTB7C_uc010dob.1_Silent_p.F251F|ZBTB7C_uc010doc.1_Silent_p.F260F|ZBTB7C_uc010dod.1_Silent_p.F273F|ZBTB7C_uc010doe.1_Silent_p.F251F|ZBTB7C_uc010dof.1_Silent_p.F251F|ZBTB7C_uc010dog.1_Silent_p.F251F|ZBTB7C_uc010doh.1_Silent_p.F260F|ZBTB7C_uc010doi.1_Silent_p.F251F|ZBTB7C_uc010doj.1_Silent_p.F260F|ZBTB7C_uc010dok.1_Silent_p.F300F|ZBTB7C_uc010dol.1_Silent_p.F260F|ZBTB7C_uc010doa.1_Silent_p.F273F|ZBTB7C_uc010don.1_Silent_p.F259F|ZBTB7C_uc010doo.1_Silent_p.F251F|ZBTB7C_uc010dop.1_Silent_p.F251F|ZBTB7C_uc010doq.1_Silent_p.F260F|ZBTB7C_uc010dor.1_Silent_p.F273F|ZBTB7C_uc010dos.1_Silent_p.F251F|ZBTB7C_uc010dot.1_Silent_p.F251F|ZBTB7C_uc010dou.1_Silent_p.F260F|ZBTB7C_uc010dom.1_Silent_p.F260F	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	251						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGTCCGGGGCGAATGGAGACA	0.597000													13	20					0	0	0.00185496	0	0
POLI	11201	broad.mit.edu	37	18	51810326	51810326	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr18:51810326C>T	uc002lfj.3	+	7	1078	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L	POLI_uc010xds.1_Missense_Mutation_p.S258L|POLI_uc002lfk.3_Missense_Mutation_p.S234L|POLI_uc010dpg.2_5'UTR	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	337				S -> T (in Ref. 4; CAB66605).	DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAAAAATGTTCATCTGAAGTT	0.284000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					6	17					0	0	0.00198382	0	0
POLI	11201	broad.mit.edu	37	18	51810329	51810329	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr18:51810329C>T	uc002lfj.3	+	7	1081	c.1013C>T	c.(1012-1014)TCT>TTT	p.S338F	POLI_uc010xds.1_Missense_Mutation_p.S259F|POLI_uc002lfk.3_Missense_Mutation_p.S235F|POLI_uc010dpg.2_5'UTR	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	338					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAATGTTCATCTGAAGTTGAA	0.284000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	15					0	0	0.000157383	0	0
KIAA1543	57662	broad.mit.edu	37	19	7670356	7670356	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:7670356C>T	uc002mgv.3	+	2	494	c.393C>T	c.(391-393)CCC>CCT	p.P131P	KIAA1543_uc002mgu.3_Silent_p.P131P	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	131					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GGCACCAGCCCATTCTCATGG	0.687000													12	7					0	0	0.000978159	0	0
ZNF439	90594	broad.mit.edu	37	19	11977098	11977098	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:11977098C>T	uc002mss.2	+	1	255	c.127C>T	c.(127-129)CTC>TTC	p.L43F	ZNF439_uc002msr.2_Intron	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	43	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCAGAAGAATCTCTACAGGGA	0.448000													69	61					0	0	0.000781405	0	0
ZNF878	729747	broad.mit.edu	37	19	12155673	12155673	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:12155673A>C	uc002mta.1	-	5	684	c.684T>G	c.(682-684)AGT>AGG	p.S228R		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	181	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAAACTGAATGCTT	0.403000													4	198					0	0	0.00024832	0	0
CHERP	10523	broad.mit.edu	37	19	16630054	16630054	+	Silent	SNP	A	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:16630054A>T	uc002nei.1	-	17	2741	c.2667T>A	c.(2665-2667)GCT>GCA	p.A889A	MED26_uc002nee.2_RNA|C19orf44_uc002neh.1_Intron|C19orf44_uc010eai.1_Intron|CHERP_uc010xpg.1_Silent_p.A428A	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	889	G-patch.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						GGTCATCCAGAGCCACGCCCA	0.622000													26	27					0	0	0.00106085	0	0
KIAA1683	80726	broad.mit.edu	37	19	18368473	18368473	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:18368473G>A	uc002nin.2	-	4	3276	c.3060C>T	c.(3058-3060)TTC>TTT	p.F1020F	PDE4C_uc002nil.3_5'Flank|KIAA1683_uc010ebn.2_Silent_p.F1207F|KIAA1683_uc010xqe.1_Silent_p.F974F|KIAA1683_uc010xqf.1_RNA	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	1020						mitochondrion				ovary(2)	2						TGCCATCCTGGAACCAGCTTC	0.667000													30	22					0	0	0.0024448	0	0
ZNF208	7757	broad.mit.edu	37	19	22155201	22155201	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:22155201G>A	uc002nqp.2	-	5	2484	c.2335C>T	c.(2335-2337)CAT>TAT	p.H779Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATTTTCTTATGATAACTAAGG	0.363000													30	25					0	0	0.00178596	0	0
ZNF233	353355	broad.mit.edu	37	19	44778746	44778746	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:44778746G>A	uc002oyz.1	+	5	2060	c.1933G>A	c.(1933-1935)GAG>AAG	p.E645K	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.E460K	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	645					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				CCATACTGGAGAGAAACCATA	0.428000													11	19					0	0	0.000978159	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48565258	48565258	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:48565258G>C	uc002phx.2	-	14	1652	c.1254C>G	c.(1252-1254)TTC>TTG	p.F418L	PLA2G4C_uc002phw.2_Missense_Mutation_p.F353L|PLA2G4C_uc010elr.2_Missense_Mutation_p.F418L|PLA2G4C_uc010xzd.1_Missense_Mutation_p.F428L	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	418	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		CGATTACCTCGAAAGGATCTC	0.627000													52	43					0	0	0.000781405	0	0
PRMT1	3276	broad.mit.edu	37	19	50189399	50189399	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:50189399C>G	uc010enf.1	+	9	851	c.809C>G	c.(808-810)CCG>CGG	p.P270R	PRMT1_uc002ppc.1_RNA|PRMT1_uc002ppd.2_Missense_Mutation_p.P246R|PRMT1_uc002ppe.2_Missense_Mutation_p.P252R|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Missense_Mutation_p.P217R|PRMT1_uc010yba.1_RNA|PRMT1_uc010ybb.1_5'Flank|C19orf76_uc002pph.2_5'Flank	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	251						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		TTCACCTCCCCGTTCTGCCTG	0.592000													11	17					0	0	0.00244969	0	0
KLK5	25818	broad.mit.edu	37	19	51451995	51451995	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:51451995G>A	uc002pue.2	-	6	845	c.627C>T	c.(625-627)ATC>ATT	p.I209I	KLK5_uc002puf.2_Silent_p.I209I|KLK5_uc002pug.2_Silent_p.I209I	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	209	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		TTAGCACGCTGATATTCAAGC	0.512000													15	15					0	0	0.000308642	0	0
XDH	7498	broad.mit.edu	37	2	31606641	31606641	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:31606641G>A	uc002rnv.1	-	10	945	c.866C>T	c.(865-867)TCG>TTG	p.S289L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	289	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	ATGTTCTACCGAATTCAGCTC	0.502000													14	23					0	0	0.000308642	0	0
DCTN1	1639	broad.mit.edu	37	2	74594835	74594835	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:74594835G>A	uc002skx.2	-	18	2483	c.2172C>T	c.(2170-2172)ATC>ATT	p.I724I	DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Silent_p.I590I|DCTN1_uc002sku.2_Silent_p.I590I|DCTN1_uc002skw.1_Silent_p.I700I|DCTN1_uc010ffd.2_Silent_p.I704I|DCTN1_uc002sky.2_Silent_p.I687I	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	724					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GATAGTACTTGATGGCCTTGG	0.498000													13	23					0	0	0.000308642	0	0
DNAH6	1768	broad.mit.edu	37	2	84806744	84806744	+	Missense_Mutation	SNP	C	T	T	rs142042706		TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:84806744C>T	uc010fgb.2	+	14	2307	c.2170C>T	c.(2170-2172)CCA>TCA	p.P724S	DNAH6_uc002soo.2_Missense_Mutation_p.P303S|DNAH6_uc002sop.2_Missense_Mutation_p.P303S	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	724	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TGAGTTTGTTCCAACTACTAC	0.343000													15	33					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	2	89339775	89339775	+	RNA	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:89339775G>A	uc010ytr.1	-	64		c.6084C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGGCTGCAGGCTGCTGATGG	0.502000													56	107					0	0	0.000781405	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300629	103300629	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:103300629G>A	uc002tca.2	+	5	1401	c.1259G>A	c.(1258-1260)CGG>CAG	p.R420Q		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	420	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						AATAGGTTCCGGACCATTCCC	0.453000													25	59					0	0	0.000878237	0	0
LRP1B	53353	broad.mit.edu	37	2	141356370	141356370	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:141356370G>A	uc002tvj.1	-	43	7996	c.7024C>T	c.(7024-7026)CCA>TCA	p.P2342S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2342	Extracellular (Potential).|LDL-receptor class B 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATGATACTTGGATGTTGTTCA	0.338000										TSP Lung(27;0.18)			17	26					0	0	0.00229938	0	0
TTN	7273	broad.mit.edu	37	2	179467243	179467243	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:179467243G>A	uc010zfg.1	-	232	47406	c.47182C>T	c.(47182-47184)CCA>TCA	p.P15728S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P9423S|TTN_uc010zfi.1_Missense_Mutation_p.P9356S|TTN_uc010zfj.1_Missense_Mutation_p.P9231S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16655							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTGGCTGGAGGTTTCCAT	0.403000													6	13					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179597628	179597628	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:179597628C>T	uc010zfg.1	-	52	12767	c.12543G>A	c.(12541-12543)GGG>GGA	p.G4181G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G842G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5108							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTGAAATTCCCTGCATCAT	0.453000													7	23					0	0	0.000157383	0	0
DNAH7	56171	broad.mit.edu	37	2	196664189	196664189	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:196664189G>A	uc002utj.3	-	55	10285	c.10184C>T	c.(10183-10185)CCA>CTA	p.P3395L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3395					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTGCAACATTGGAATAACCTA	0.353000													32	65					0	0	0.00058488	0	0
ZFAND2B	130617	broad.mit.edu	37	2	220072749	220072749	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:220072749C>T	uc002vka.2	+	4	595	c.423C>T	c.(421-423)ACC>ACT	p.T141T	ZFAND2B_uc010zkt.1_Silent_p.T141T|ZFAND2B_uc010fwd.1_Silent_p.T141T|ZFAND2B_uc002vjy.1_Silent_p.T141T|ZFAND2B_uc002vjz.1_Silent_p.T141T|ZFAND2B_uc002vkb.1_Silent_p.T32T	NM_138802	NP_620157	Q8WV99	ZFN2B_HUMAN	zinc finger, AN1-type domain 2B	141	AN1-type 2.					endoplasmic reticulum	protein binding|zinc ion binding				0		Renal(207;0.0915)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCACCCAACCAGCCGGGCAG	0.512000													25	63					0	0	0.00106085	0	0
PTK6	5753	broad.mit.edu	37	20	62161433	62161433	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr20:62161433G>A	uc002yfg.2	-	7	1206	c.1166C>T	c.(1165-1167)CCA>CTA	p.P389L	PTK6_uc011aay.1_Missense_Mutation_p.P288L|PTK6_uc011aaz.1_Missense_Mutation_p.P151L	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	389	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			GACAGTACCTGGGTAGGGCAC	0.637000													7	16					0	0	0.000274275	0	0
BAGE2	85319	broad.mit.edu	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr21:11058322C>T	uc002yit.1	-	3	326	c.118G>A	c.(118-120)GAT>AAT	p.D40N	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAATGCACATCGCTGAAAGGG	0.383000													10	155					0	0	0.000978159	0	0
LIPI	149998	broad.mit.edu	37	21	15561499	15561499	+	Silent	SNP	G	A	A	rs148528170	byFrequency	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr21:15561499G>A	uc002yjm.2	-	2	361	c.351C>T	c.(349-351)TTC>TTT	p.F117F	LIPI_uc010gkw.1_Silent_p.F50F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	96					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		AAATCCTTACGAAGTTCTGAA	0.368000													22	31					0	0	0.00278032	0	0
IFNAR2	3455	broad.mit.edu	37	21	34617374	34617374	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr21:34617374C>T	uc002yrd.2	+	4	544	c.216C>T	c.(214-216)ATC>ATT	p.I72I	IFNAR2_uc002yrb.2_Silent_p.I72I|IFNAR2_uc002yrc.2_Silent_p.I72I|IFNAR2_uc002yre.2_Silent_p.I72I|IFNAR2_uc002yrf.2_Silent_p.I72I|IFNAR2_uc002yrg.2_5'Flank	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	72	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TGTATACAATCATGAGGTTGG	0.303000													25	49					0	0	0.001512	0	0
ABCG1	9619	broad.mit.edu	37	21	43693533	43693533	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr21:43693533G>A	uc002zaq.2	+	4	631	c.525G>A	c.(523-525)CAG>CAA	p.Q175Q	ABCG1_uc002zan.2_Silent_p.Q177Q|ABCG1_uc002zam.2_Silent_p.Q153Q|ABCG1_uc002zao.2_Silent_p.Q172Q|ABCG1_uc002zap.2_Silent_p.Q175Q|ABCG1_uc002zar.2_Silent_p.Q186Q|ABCG1_uc011aev.1_Silent_p.Q186Q	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	175	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	TCACTGTGCAGGAGGCCATGA	0.537000													8	17					0	0	0.000157383	0	0
C21orf29	54084	broad.mit.edu	37	21	45929254	45929254	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr21:45929254C>T	uc002zfe.1	-	10	1648	c.1582G>A	c.(1582-1584)GAC>AAC	p.D528N	C21orf29_uc010gpv.1_Missense_Mutation_p.D460N	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	528	EAR 5.				cell adhesion	extracellular region	structural molecule activity				0						ACCTCCCAGTCTGCAGCACCG	0.403000													6	13					0	0	0.000157383	0	0
PLA2G6	8398	broad.mit.edu	37	22	38536174	38536174	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr22:38536174G>A	uc003auy.1	-	5	748	c.612C>T	c.(610-612)CTC>CTT	p.L204L	PLA2G6_uc003auz.1_Silent_p.L204L|PLA2G6_uc003ava.1_Silent_p.L204L|PLA2G6_uc003avb.2_Silent_p.L204L|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Intron	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	204	ANK 2.				cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	TCCTTCCAAGGAGCTGATGAA	0.443000													16	31					0	0	0.000958276	0	0
PHF21B	112885	broad.mit.edu	37	22	45312300	45312300	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr22:45312300G>A	uc003bfn.2	-	4	575	c.424C>T	c.(424-426)CCG>TCG	p.P142S	PHF21B_uc003bfm.2_5'UTR|PHF21B_uc011aqk.1_Missense_Mutation_p.P130S|PHF21B_uc011aql.1_Missense_Mutation_p.P142S|PHF21B_uc011aqm.1_Missense_Mutation_p.P130S	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	142							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CTGCTCAGCGGAGAGGCGAGG	0.726000													16	19					0	0	0.000422831	0	0
BRD1	23774	broad.mit.edu	37	22	50187931	50187931	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr22:50187931G>A	uc003biv.2	-	6	2597	c.2110C>T	c.(2110-2112)CTG>TTG	p.L704L	BRD1_uc011arf.1_Silent_p.L299L|BRD1_uc011arg.1_Silent_p.L753L|BRD1_uc011arh.1_Silent_p.L704L|BRD1_uc003biu.3_Silent_p.L704L	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	704					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GCGGGGTCCAGCAACCTGTCC	0.602000													37	51					0	0	0.000680045	0	0
GRIP2	80852	broad.mit.edu	37	3	14564565	14564565	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:14564565C>T	uc011avi.1	-	7	799	c.799G>A	c.(799-801)GGG>AGG	p.G267R	GRIP2_uc011avh.1_5'UTR|GRIP2_uc003byu.1_3'UTR|GRIP2_uc003byv.1_3'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	170	PDZ 2.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GACTTGTGCCCATCTTCATGG	0.622000													28	45					0	0	0.00283554	0	0
NISCH	11188	broad.mit.edu	37	3	52526404	52526404	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:52526404C>T	uc011beg.1	+	22	4493	c.4421C>T	c.(4420-4422)CCC>CTC	p.P1474L	NISCH_uc003ded.3_Missense_Mutation_p.P1474L|NISCH_uc003dee.3_Missense_Mutation_p.P963L|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.P223L|STAB1_uc003dei.1_5'Flank|STAB1_uc003dej.2_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1474					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		GTGTTTGTCCCCAGTGCTGAG	0.652000													33	68					0	0	0.0024448	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54596844	54596844	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:54596844G>A	uc003dhf.2	+	6	610	c.562G>A	c.(562-564)GGG>AGG	p.G188R	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G94R|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_5'UTR	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	188	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AATTGTCAATGGGGTTTATTG	0.408000													8	17					0	0	0.000157383	0	0
TBC1D23	55773	broad.mit.edu	37	3	99998499	99998499	+	Silent	SNP	A	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:99998499A>G	uc003dtt.2	+	2	237	c.60A>G	c.(58-60)AAA>AAG	p.K20K	TBC1D23_uc003dts.2_Silent_p.K20K	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	20						intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						TTAGGGAAAAAGATCTTGAAG	0.353000													2	11					0	0	6.4e-05	0	0
DPPA2	151871	broad.mit.edu	37	3	109027921	109027921	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:109027921G>A	uc003dxo.2	-	5	595	c.348C>T	c.(346-348)ATC>ATT	p.I116I		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	116	SAP.					nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						GATAAACTTCGATTTTCTTAG	0.408000													47	98					0	0	0.000781405	0	0
SIDT1	54847	broad.mit.edu	37	3	113286510	113286510	+	Silent	SNP	T	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:113286510T>G	uc003eak.2	+	3	1119	c.468T>G	c.(466-468)GGT>GGG	p.G156G	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.G156G|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	156	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CACCCCTGGGTGCTCAGTACA	0.512000													33	95					0	0	0.000692331	0	0
FBXO40	51725	broad.mit.edu	37	3	121340500	121340500	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:121340500C>T	uc003eeg.2	+	3	434	c.224C>T	c.(223-225)TCC>TTC	p.S75F		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	75	TRAF-type.				muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TGCCCTCTGTCCATGTCCCGC	0.597000													11	42					0	0	0.000978159	0	0
HCLS1	3059	broad.mit.edu	37	3	121363721	121363722	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:121363721_121363722CC>GT	uc003eeh.3	-	5	467_468	c.342_343GG>AC	c.(340-345)ACGGAT>ACACAT	p.D115H	HCLS1_uc011bjj.1_Missense_Mutation_p.D115H|HCLS1_uc011bjk.1_RNA|HCLS1_uc011bjl.1_Missense_Mutation_p.D115H	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	115	Cortactin 1.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		TTGGCAGCATCCGTCTGAGAAG	0.515000													31	55					0	0	6.4e-05	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587000													3	30					0	0	6.4e-05	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229045	8229045	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:8229045C>T	uc003gkv.3	+	12	1725	c.1624C>T	c.(1624-1626)CGC>TGC	p.R542C	SH3TC1_uc003gkw.3_Missense_Mutation_p.R466C|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	542							binding			large_intestine(2)|pancreas(1)	3						GCTGACTGGGCGCCTGGCACA	0.687000													4	9					0	0	0.00024832	0	0
SULT1E1	6783	broad.mit.edu	37	4	70709918	70709918	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:70709918C>T	uc003heo.2	-	7	846	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	245					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTCATAATTTCGTCTGGCAGT	0.428000													35	89					0	0	0.00111076	0	0
MMRN1	22915	broad.mit.edu	37	4	90856667	90856667	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:90856667G>A	uc003hst.2	+	6	1907	c.1836G>A	c.(1834-1836)GAG>GAA	p.E612E	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Silent_p.E354E	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	612	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		ACACAGAAGAGAATTTACATG	0.338000													28	49					0	0	0.000720815	0	0
PRDM5	11107	broad.mit.edu	37	4	121742401	121742401	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:121742401C>T	uc003idn.2	-	4	650	c.400G>A	c.(400-402)GAA>AAA	p.E134K	PRDM5_uc003ido.2_Missense_Mutation_p.E134K|PRDM5_uc010ine.2_Missense_Mutation_p.E134K|PRDM5_uc010inf.2_Missense_Mutation_p.E134K	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	134					histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						ATTTGCTGTTCTTCCTCCTCA	0.408000													33	91					0	0	0.00283554	0	0
PCDH18	54510	broad.mit.edu	37	4	138442323	138442323	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:138442323C>T	uc003ihe.3	-	4	3655	c.3268G>A	c.(3268-3270)GAG>AAG	p.E1090K	PCDH18_uc003ihf.3_Missense_Mutation_p.E1082K|PCDH18_uc011cgz.1_Missense_Mutation_p.E301K|PCDH18_uc003ihg.3_Missense_Mutation_p.E869K|PCDH18_uc011cha.1_Missense_Mutation_p.E270K	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1090	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGGATCTCCTCCATGGCTGGC	0.502000													15	24					0	0	0.00244969	0	0
TKTL2	84076	broad.mit.edu	37	4	164394478	164394478	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:164394478C>T	uc003iqp.3	-	1	570	c.409G>A	c.(409-411)GCT>ACT	p.A137T		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	137						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CCAGTATAAGCCATTCCACAT	0.537000													22	63					0	0	0.00047179	0	0
TRIML1	339976	broad.mit.edu	37	4	189065256	189065256	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr4:189065256G>A	uc003izm.1	+	5	940	c.825G>A	c.(823-825)ACG>ACA	p.T275T	TRIML1_uc003izn.1_5'UTR	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	275	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding	p.T275T(1)		ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCCGCATCACGGGAATGAAGG	0.527000													11	20					0	0	0.00185496	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	143495	143495	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:143495G>A	uc003jak.2	+	3	670	c.620G>A	c.(619-621)GGG>GAG	p.G207E		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	207					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GTCTCCGCAGGGACCCGAGAC	0.632000													34	48					0	0	0.000953801	0	0
DNAH5	1767	broad.mit.edu	37	5	13871029	13871029	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:13871029A>C	uc003jfd.2	-	24	3723	c.3681T>G	c.(3679-3681)AGT>AGG	p.S1227R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1227	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTCCATCTCACTCCGGTATT	0.408000									Kartagener_syndrome				21	69					0	0	0.00188189	0	0
SFRS12	140890	broad.mit.edu	37	5	65473474	65473474	+	Silent	SNP	T	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:65473474T>C	uc003juo.2	+	12	2025	c.1365T>C	c.(1363-1365)AGT>AGC	p.S455S	SFRS12_uc003jun.2_Silent_p.S571S|SFRS12_uc010iwy.2_Silent_p.S454S	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	455	Arg/Glu/Lys/Ser-rich.				mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		AGAAGAACAGTACTTCACTTA	0.408000													34	51					0	0	0.00128727	0	0
EDIL3	10085	broad.mit.edu	37	5	83362376	83362376	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:83362376G>A	uc003kio.1	-	7	1120	c.701C>T	c.(700-702)GCC>GTC	p.A234V	EDIL3_uc003kip.1_Missense_Mutation_p.A224V|EDIL3_uc011ctt.1_Missense_Mutation_p.A11V	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	234	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		AATCCTCTTGGCTCCTTGGGT	0.373000													24	42					0	0	0.000586117	0	0
CDC25C	995	broad.mit.edu	37	5	137666861	137666861	+	Silent	SNP	C	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:137666861C>G	uc003lcp.1	-	2	280	c.9G>C	c.(7-9)ACG>ACC	p.T3T	CDC25C_uc003lcq.1_Silent_p.T3T|CDC25C_uc003lcr.1_Silent_p.T3T|CDC25C_uc011cyp.1_Silent_p.T20T|CDC25C_uc003lcs.1_Silent_p.T81T|CDC25C_uc010jet.1_Silent_p.T3T|CDC25C_uc003lct.1_Silent_p.T3T|CDC25C_uc003lcu.1_Silent_p.T3T	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	3					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			AGAAGAGTTCCGTAGACATGG	0.448000													3	54					0	0	6.4e-05	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567282	140567282	+	Silent	SNP	G	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:140567282G>C	uc003liw.1	+	1	390	c.390G>C	c.(388-390)TCG>TCC	p.S130S		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	130	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGATCACTCGCCAGTGTTTC	0.428000													11	48					0	0	0.000673444	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439748	145439748	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:145439748C>T	uc003lnt.2	+	9	2113	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	SH3RF2_uc011dbl.1_Silent_p.I625I|SH3RF2_uc011dbm.1_Silent_p.I110I|SH3RF2_uc003lnu.2_Silent_p.I116I|SH3RF2_uc011dbn.1_Silent_p.I116I|SH3RF2_uc011dbo.1_Silent_p.I82I	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	625							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACCATCCATCCTGGTGAAAC	0.522000													22	69					0	0	0.000878237	0	0
GRM6	2916	broad.mit.edu	37	5	178409926	178409926	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:178409926G>A	uc003mjr.2	-	9	2600	c.2421C>T	c.(2419-2421)GCC>GCT	p.A807A	GRM6_uc003mjq.2_Silent_p.A210A	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	807	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CAGCTGACTGGGCAGTGCCAA	0.547000													17	34					0	0	0.00188189	0	0
CNOT6	57472	broad.mit.edu	37	5	179994990	179994990	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:179994990G>A	uc003mlx.2	+	9	1363	c.1014G>A	c.(1012-1014)TCG>TCA	p.S338S	CNOT6_uc010jld.2_Silent_p.S338S|CNOT6_uc010jle.2_Silent_p.S333S	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	338					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		GGAAGGAATCGATTGAAATGC	0.413000													19	41					0	0	0.000586117	0	0
FAM50B	26240	broad.mit.edu	37	6	3850386	3850386	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:3850386A>G	uc003mvu.2	+	2	453	c.341A>G	c.(340-342)AAG>AGG	p.K114R		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	114						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				cGCGAGCGCAAGCGTAAGATC	0.532000													3	23					0	0	0.00024832	0	0
HIVEP1	3096	broad.mit.edu	37	6	12163623	12163623	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:12163623G>A	uc003nac.2	+	9	7265	c.7086G>A	c.(7084-7086)AAG>AAA	p.K2362K	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2362					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AAGAACAGAAGCAGCAAATAA	0.547000													39	84					0	0	0.00111076	0	0
PRSS16	10279	broad.mit.edu	37	6	27216928	27216928	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:27216928G>A	uc003nja.2	+	4	399	c.387G>A	c.(385-387)CTG>CTA	p.L129L	PRSS16_uc011dkt.1_Intron|PRSS16_uc003njb.2_Intron|PRSS16_uc010jqq.1_Silent_p.L19L|PRSS16_uc010jqr.1_Silent_p.L19L|PRSS16_uc003njc.1_RNA|PRSS16_uc003njd.2_5'Flank	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	129					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						TGATAAGCCTGGAACACAGAT	0.597000													27	50					0	0	0.00106085	0	0
OR11A1	26531	broad.mit.edu	37	6	29395290	29395290	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:29395290C>T	uc003nmg.2	-	1	220	c.129G>A	c.(127-129)GGG>GGA	p.G43G		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCAGCATATTCCCTATGATGA	0.403000													16	39					0	0	0.000422831	0	0
SLC44A4	80736	broad.mit.edu	37	6	31838420	31838420	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:31838420G>A	uc010jti.2	-	11	1063	c.997C>T	c.(997-999)CGG>TGG	p.R333W	SLC44A4_uc011dol.1_Missense_Mutation_p.R257W|SLC44A4_uc011dom.1_Missense_Mutation_p.R291W	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	333	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	ATACGAATCCGCTGCCGCAGG	0.622000													19	95					0	0	0.00152264	0	0
GPR116	221395	broad.mit.edu	37	6	46826199	46826199	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:46826199C>T	uc003oyo.3	-	17	3730	c.3441G>A	c.(3439-3441)CTG>CTA	p.L1147L	GPR116_uc011dwj.1_Silent_p.L702L|GPR116_uc011dwk.1_Silent_p.L576L|GPR116_uc003oyp.3_Silent_p.L1005L|GPR116_uc003oyq.3_Silent_p.L1147L|GPR116_uc010jzi.1_Silent_p.L819L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1147	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GGGTGGCTCCCAGCGTGATGA	0.562000													17	27					0	0	0.000422831	0	0
SNAP91	9892	broad.mit.edu	37	6	84269854	84269854	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:84269854G>A	uc011dze.1	-	27	2917	c.2600C>T	c.(2599-2601)CCC>CTC	p.P867L	SNAP91_uc011dzd.1_Missense_Mutation_p.P365L|SNAP91_uc003pkb.2_Missense_Mutation_p.P776L|SNAP91_uc003pkc.2_Missense_Mutation_p.P837L|SNAP91_uc003pkd.2_Missense_Mutation_p.P560L|SNAP91_uc003pka.2_Missense_Mutation_p.P865L	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	867	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AGCTCCAAAGGGGGGCCTCAT	0.517000													20	49					0	0	0.00229938	0	0
EPHA7	2045	broad.mit.edu	37	6	94124440	94124440	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:94124440A>G	uc003poe.2	-	2	384	c.143T>C	c.(142-144)ATT>ACT	p.I48T	EPHA7_uc003pof.2_Missense_Mutation_p.I48T|EPHA7_uc011eac.1_Missense_Mutation_p.I48T|EPHA7_uc003pog.3_Missense_Mutation_p.I48T	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	48	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TGGAGAGGAAATCCACTCCAA	0.353000													20	41					0	0	0.00229938	0	0
NMBR	4829	broad.mit.edu	37	6	142397026	142397026	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:142397026A>G	uc003qiu.2	-	3	1073	c.932T>C	c.(931-933)GTT>GCT	p.V311A		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	311	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		AAAACTGAGAACCCGGGCAAC	0.443000													12	25					0	0	0.00136819	0	0
TULP4	56995	broad.mit.edu	37	6	158923932	158923932	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:158923932C>T	uc003qrf.2	+	13	4594	c.3237C>T	c.(3235-3237)GAC>GAT	p.D1079D	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1079					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		GCGCCCGCGACCGCACCGACT	0.687000													15	49					0	0	0.00074312	0	0
LPA	4018	broad.mit.edu	37	6	161026196	161026196	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:161026196C>T	uc003qtl.2	-	19	2947	c.2827G>A	c.(2827-2829)GGA>AGA	p.G943R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3451	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGTCCATTTCCGTGGTAGCAC	0.463000													104	251					0	0	0.000781405	0	0
C6orf118	168090	broad.mit.edu	37	6	165715219	165715219	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr6:165715219G>A	uc003qum.3	-	2	628	c.592C>T	c.(592-594)CGG>TGG	p.R198W	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	198											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TAGTGGTGCCGGTCCCTGGTG	0.632000													5	55					0	0	0.00198382	0	0
CARD11	84433	broad.mit.edu	37	7	2979560	2979560	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:2979560G>A	uc003smv.2	-	6	1091	c.687C>T	c.(685-687)ATC>ATT	p.I229I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	229	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TTAGCTGATCGATCTGAAATA	0.498000			Mis		DLBCL								51	54					0	0	0.000781405	0	0
AHR	196	broad.mit.edu	37	7	17379647	17379647	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:17379647C>T	uc011jxz.1	+	10	2811	c.2198C>T	c.(2197-2199)TCT>TTT	p.S733F	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	733					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					CCCACTACTTCTAGTTTAGAA	0.393000													35	62					0	0	0.00283554	0	0
PDE1C	5137	broad.mit.edu	37	7	31887623	31887623	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:31887623C>A	uc003tcm.1	-	9	1408	c.939G>T	c.(937-939)GAG>GAT	p.E313D	PDE1C_uc003tcn.1_Missense_Mutation_p.E313D|PDE1C_uc003tco.1_Missense_Mutation_p.E373D|PDE1C_uc003tcr.2_Missense_Mutation_p.E313D|PDE1C_uc003tcs.2_Missense_Mutation_p.E313D	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	313	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TATTCATTTCCTCGTCATCTT	0.413000													35	64					3.11337e-16	1.88878e-15	0.00283554	1	0
PCLO	27445	broad.mit.edu	37	7	82546012	82546012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:82546012G>A	uc003uhx.2	-	7	11579	c.11290C>T	c.(11290-11292)CAG>TAG	p.Q3764*	PCLO_uc003uhv.2_Nonsense_Mutation_p.Q3764*|PCLO_uc010lec.2_Nonsense_Mutation_p.Q729*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3695					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTATGTCCTGGAGAATCTTG	0.453000													28	40					0	0	0.00127121	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558309	113558309	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:113558309G>A	uc010ljy.1	-	1	774	c.743C>T	c.(742-744)CCT>CTT	p.P248L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	248					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTGTCTGTTAGGAACTTCTTT	0.303000													80	122					0	0	0.000781405	0	0
PLXNA4	91584	broad.mit.edu	37	7	131817824	131817824	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:131817824C>T	uc003vra.3	-	31	5802	c.5573G>A	c.(5572-5574)GGC>GAC	p.G1858D	PLXNA4_uc003vqz.3_Missense_Mutation_p.G143D	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1858	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCTGTATTTGCCCACATAGGA	0.522000													29	69					0	0	0.00209593	0	0
BPGM	669	broad.mit.edu	37	7	134363713	134363713	+	Missense_Mutation	SNP	A	G	G	rs11769006		TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:134363713A>G	uc003vrv.2	+	4	1251	c.710A>G	c.(709-711)GAC>GGC	p.D237G	BPGM_uc003vrw.2_Missense_Mutation_p.D237G|BPGM_uc003vrx.2_Missense_Mutation_p.D237G	NM_199186	NP_954655	P07738	PMGE_HUMAN	bisphosphoglycerate mutase	237					glycolysis|respiratory gaseous exchange		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						TTCCTGGGTGACCAAGAGGCG	0.428000													71	175					0	0	0.000781405	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545930	138545930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:138545930C>T	uc011kql.1	-	16	5251	c.5202G>A	c.(5200-5202)TGG>TGA	p.W1734*	KIAA1549_uc011kqi.1_Nonsense_Mutation_p.W518*|KIAA1549_uc003vuk.3_Nonsense_Mutation_p.W1684*|KIAA1549_uc011kqj.1_Nonsense_Mutation_p.W1734*|KIAA1549_uc011kqk.1_Nonsense_Mutation_p.W518*	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1734						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AGAAGGACCCCCACTGGGTGG	0.617000			O	BRAF	pilocytic astrocytoma								34	37					0	0	0.00170553	0	0
TRY6	154754	broad.mit.edu	37	7	142481316	142481317	+	Missense_Mutation	DNP	TG	CA	CA	rs140068138	by1000genomes	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:142481316_142481317TG>CA	uc011ksq.1	+	3	473_474	c.390_391TG>CA	c.(388-393)ACTGCC>ACCACC	p.A131T	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CTCTGCCCACTGCCCCTCCAGC	0.550000													11	69					0	0	6.4e-05	0	0
TRY6	154754	broad.mit.edu	37	7	142482242	142482242	+	Missense_Mutation	SNP	G	A	A	rs143538588	by1000genomes	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:142482242G>A	uc011ksq.1	+	5	705	c.622G>A	c.(622-624)GGA>AGA	p.G208R	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						GGTCTGCAATGGACAGCTTCA	0.493000													6	78					0	0	0.000157383	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140725	143140725	+	Silent	SNP	T	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:143140725T>G	uc011ktg.1	+	1	180	c.180T>G	c.(178-180)GTT>GTG	p.V60V	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	60	Helical; Name=2; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					AGTTATTGGTTAGCCTAGGGG	0.507000													38	53					0	0	0.00170553	0	0
EZH2	2146	broad.mit.edu	37	7	148512600	148512600	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr7:148512600T>C	uc003wfd.1	-	13	1695	c.1529A>G	c.(1528-1530)AAG>AGG	p.K510R	EZH2_uc011kug.1_Missense_Mutation_p.K501R|EZH2_uc003wfb.1_Missense_Mutation_p.K515R|EZH2_uc003wfc.1_Missense_Mutation_p.K471R|EZH2_uc011kuh.1_Missense_Mutation_p.K501R	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	510					negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			ATGCTAACCCTTTTTCAGCTG	0.368000			Mis		DLBCL								3	163					0	0	0.00024832	0	0
C8orf74	203076	broad.mit.edu	37	8	10555406	10555406	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:10555406C>T	uc003wtd.1	+	3	568	c.539C>T	c.(538-540)GCC>GTC	p.A180V	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	180											0				COAD - Colon adenocarcinoma(149;0.0811)		CAGAAGCGCGCCGACGTGCTG	0.706000													6	5					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	8	30209756	30209756	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:30209756C>G	uc003xhz.2	+	1	238	c.233C>G	c.(232-234)TCA>TGA	p.S78*						SubName: Full=Class IVb beta tubulin;																		TCTGTTCGCTCAGGTCCTTTT	0.527000													40	37					0	0	0.00148497	0	0
NRG1	3084	broad.mit.edu	37	8	32453417	32453417	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:32453417G>A	uc003xiv.2	+	2	689	c.172G>A	c.(172-174)GAA>AAA	p.E58K	NRG1_uc003xip.2_Missense_Mutation_p.E273K|NRG1_uc003xir.2_Missense_Mutation_p.E58K|NRG1_uc010lvl.2_Missense_Mutation_p.E58K|NRG1_uc010lvm.2_Missense_Mutation_p.E58K|NRG1_uc010lvn.2_Missense_Mutation_p.E58K|NRG1_uc003xis.2_Missense_Mutation_p.E58K|NRG1_uc011lbf.1_Missense_Mutation_p.E58K|NRG1_uc010lvo.2_Missense_Mutation_p.E58K|NRG1_uc003xiu.2_Missense_Mutation_p.E58K|NRG1_uc003xiw.2_Missense_Mutation_p.E58K|NRG1_uc003xit.2_Missense_Mutation_p.E58K|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Missense_Mutation_p.E24K|NRG1_uc010lvq.2_Missense_Mutation_p.E24K	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	58	Extracellular (Potential).|Ig-like C2-type.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		CCTTCGGTGTGAAACCAGTTC	0.383000													51	41					0	0	0.000781405	0	0
KCNU1	157855	broad.mit.edu	37	8	36673164	36673164	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:36673164G>A	uc010lvw.2	+	9	1041	c.954G>A	c.(952-954)AAG>AAA	p.K318K	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	318	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TTGCTAACAAGAGGAAATACA	0.299000													24	22					0	0	0.000878237	0	0
RP1	6101	broad.mit.edu	37	8	55538676	55538676	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:55538676C>T	uc003xsd.1	+	4	2382	c.2234C>T	c.(2233-2235)TCC>TTC	p.S745F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	745					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACTTTTTGTTCCAAAAGTAAT	0.323000													15	35					0	0	0.000308642	0	0
CLVS1	157807	broad.mit.edu	37	8	62289219	62289219	+	Missense_Mutation	SNP	G	A	A	rs143211270	by1000genomes	TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:62289219G>A	uc003xuh.2	+	3	835	c.511G>A	c.(511-513)GAA>AAA	p.E171K	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.E171K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	171	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity	p.E171K(1)		skin(4)|ovary(1)	5						AGTCCTAATCGAAGATCCGGA	0.438000													42	55					0	0	0.000781405	0	0
SLC26A7	115111	broad.mit.edu	37	8	92301455	92301455	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:92301455G>A	uc003yex.2	+	4	563	c.285G>A	c.(283-285)ATG>ATA	p.M95I	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.M95I|SLC26A7_uc003yfa.2_Missense_Mutation_p.M95I	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	95	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TATTTGGAATGGGACATCATG	0.388000													43	107					0	0	0.000781405	0	0
COL14A1	7373	broad.mit.edu	37	8	121357691	121357691	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:121357691C>T	uc003yox.2	+	45	5231	c.4966C>T	c.(4966-4968)CCT>TCT	p.P1656S	COL14A1_uc003yoz.2_Missense_Mutation_p.P621S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1656	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCAAGGGCCTCCTGGGGAGCC	0.622000													19	57					0	0	0.00121646	0	0
ATAD2	29028	broad.mit.edu	37	8	124349897	124349897	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr8:124349897G>A	uc003yqh.3	-	21	3127	c.3019C>T	c.(3019-3021)CGA>TGA	p.R1007*	ATAD2_uc011lii.1_Nonsense_Mutation_p.R798*|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1007	Bromo.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			GTAAACACTCGGAATCGCTTG	0.358000													19	55					0	0	0.00047179	0	0
MLANA	2315	broad.mit.edu	37	9	5897597	5897597	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:5897597T>G	uc003zjo.1	+	3	171	c.118T>G	c.(118-120)TTA>GTA	p.L40V		NM_005511	NP_005502	Q16655	MAR1_HUMAN	melan-A	40	Helical; (Potential).					endoplasmic reticulum membrane|integral to plasma membrane|melanosome|trans-Golgi network	protein binding				0		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(1;1.15e-06)|Lung(218;0.103)		CCTGGGAGTCTTACTGCTCAT	0.483000													4	113					0	0	0.00116845	0	0
KIAA2026	158358	broad.mit.edu	37	9	5922526	5922527	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:5922526_5922527GG>AT	uc003zjq.3	-	8	3685_3686	c.3469_3470CC>AT	c.(3469-3471)CCA>ATA	p.P1157I	KIAA2026_uc010mht.2_Missense_Mutation_p.P332I	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1157										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AACAGTTCCTGGTGAGTTGACA	0.376000													18	61					0	0	6.4e-05	0	0
MIR491	574444	broad.mit.edu	37	9	20716140	20716140	+	RNA	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:20716140G>A	hsa-mir-491|MI0003126	+			c.37G>A			KIAA1797_uc003zog.1_Intron																	0						CTTCCATGAGGAGTAGAACAC	0.463000													24	45					0	0	0.00047179	0	0
PLAA	9373	broad.mit.edu	37	9	26919485	26919485	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:26919485G>C	uc003zqd.2	-	9	1665	c.1240C>G	c.(1240-1242)CCA>GCA	p.P414A	PLAA_uc003zqe.2_Missense_Mutation_p.P414A	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	414	PFU.				phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		TTATATGATGGTCCACCTTCA	0.313000													7	227					0	0	0.000274275	0	0
LRRC19	64922	broad.mit.edu	37	9	26995832	26995832	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:26995832C>T	uc003zqh.2	-	5	911	c.800G>A	c.(799-801)GGA>GAA	p.G267E	IFT74_uc010mja.2_Intron|IFT74_uc010mjb.2_Intron|IFT74_uc003zqf.3_Intron|IFT74_uc003zqg.3_Intron	NM_022901	NP_075052	Q9H756	LRC19_HUMAN	leucine rich repeat containing 19 precursor	267	Extracellular (Potential).					integral to membrane					0		all_neural(11;1.81e-09)		Lung(218;1.06e-05)|LUSC - Lung squamous cell carcinoma(38;0.0001)		CCAACTTTTTCCAAGAGGTTC	0.338000													11	26					0	0	0.000978159	0	0
TLN1	7094	broad.mit.edu	37	9	35714009	35714009	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:35714009G>A	uc003zxt.2	-	25	3544	c.3190C>T	c.(3190-3192)CTA>TTA	p.L1064L		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1064					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ACTTCCTGTAGATCTTTCTCT	0.443000													16	31					0	0	0.00121646	0	0
FBXO10	26267	broad.mit.edu	37	9	37541670	37541670	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:37541670G>A	uc004aab.2	-	2	145	c.96C>T	c.(94-96)GCC>GCT	p.A32A	FBXO10_uc004aac.2_Silent_p.A48A|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	32	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		GTTCATACCAGGCCCTGCATA	0.627000													8	26					0	0	0.000274275	0	0
GDA	9615	broad.mit.edu	37	9	74856202	74856202	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:74856202G>A	uc004aiq.2	+	11	1306	c.1123G>A	c.(1123-1125)GGA>AGA	p.G375R	GDA_uc011lse.1_Missense_Mutation_p.G301R|GDA_uc011lsf.1_Missense_Mutation_p.G301R|GDA_uc004air.2_Missense_Mutation_p.G375R|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.G297R	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	375					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		AGCTACTCTTGGAGGAAGCCA	0.383000													12	25					0	0	0.00185496	0	0
SYK	6850	broad.mit.edu	37	9	93650807	93650807	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:93650807G>A	uc004aqz.2	+	13	1938	c.1733G>A	c.(1732-1734)GGA>GAA	p.G578E	SYK_uc004ara.2_Missense_Mutation_p.G555E|SYK_uc004arb.2_Missense_Mutation_p.G555E|SYK_uc004arc.2_Missense_Mutation_p.G578E|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	578	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GGGATGAAAGGAAGTGAAGTC	0.403000			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								6	11					0	0	0.00198382	0	0
CERCAM	51148	broad.mit.edu	37	9	131186760	131186760	+	Silent	SNP	C	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:131186760C>A	uc004buz.3	+	5	1031	c.633C>A	c.(631-633)CCC>CCA	p.P211P	CERCAM_uc004buy.1_Silent_p.P133P|CERCAM_uc010mxz.2_Silent_p.P133P|CERCAM_uc010mya.1_Silent_p.P52P	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	211					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						TCCGTGTCCCCATGGTCCACT	0.617000													17	46					1.02788e-11	6.148e-11	0.000566183	1	0
CACNA1B	774	broad.mit.edu	37	9	140972591	140972591	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:140972591G>A	uc004cog.2	+	35	5120	c.4975G>A	c.(4975-4977)GAG>AAG	p.E1659K	CACNA1B_uc004coi.2_Missense_Mutation_p.E871K|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Missense_Mutation_p.E14K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1659	IV.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGCCTGGCACGAGATCATGCT	0.607000													10	16					0	0	0.000673444	0	0
CXorf22	170063	broad.mit.edu	37	X	35993478	35993478	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:35993478G>A	uc004ddj.2	+	14	2528	c.2469G>A	c.(2467-2469)TGG>TGA	p.W823*	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	823										large_intestine(1)|lung(1)|ovary(1)	3						GAAAATTTTGGAAGTAGGGAT	0.294000													14	9					0	0	0.00185496	0	0
EFHC2	80258	broad.mit.edu	37	X	44109653	44109653	+	Silent	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:44109653G>A	uc004dgb.3	-	6	735	c.645C>T	c.(643-645)TCC>TCT	p.S215S		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	215							calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						GGGTGTCGAGGGATTCGTAGG	0.438000													18	7					0	0	0.00152264	0	0
PHKA1	5255	broad.mit.edu	37	X	71870282	71870282	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:71870282G>A	uc004eax.3	-	13	1583	c.1282C>T	c.(1282-1284)CGC>TGC	p.R428C	PHKA1_uc004eay.3_Missense_Mutation_p.R428C|PHKA1_uc011mqi.1_Missense_Mutation_p.R428C	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	428					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GAAAACCTGCGATTCAGGGGA	0.383000													13	10					0	0	0.000422831	0	0
P2RY10	27334	broad.mit.edu	37	X	78216875	78216875	+	Silent	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:78216875C>T	uc004ede.2	+	4	1227	c.858C>T	c.(856-858)TTC>TTT	p.F286F	P2RY10_uc004edf.2_Silent_p.F286F	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	286	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						CACTGTATTTCCACCCTTTTT	0.423000													83	39					0	0	0.000781405	0	0
TEX13A	56157	broad.mit.edu	37	X	104464200	104464200	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:104464200G>A	uc004ema.2	-	5	788	c.676C>T	c.(676-678)CCC>TCC	p.P226S	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Silent_p.S226S	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	226						intracellular	zinc ion binding			ovary(2)	2						TCCACGTGGGGGAACTGGGTC	0.612000													12	8					0	0	0.000978159	0	0
NRK	203447	broad.mit.edu	37	X	105142685	105142685	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chrX:105142685C>T	uc004emd.2	+	8	992	c.689C>T	c.(688-690)CCA>CTA	p.P230L	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	230	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GATGAGGACCCAAGACGCTCC	0.408000										HNSCC(51;0.14)			7	2					0	0	0.00198382	0	0
EPHB2	2048	broad.mit.edu	37	1	23233280	23233281	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:23233280_23233281delAA	uc009vqj.1	+	11	2111_2112	c.1966_1967delAA	c.(1966-1968)AAGfs	p.K656fs	EPHB2_uc001bge.2_Frame_Shift_Del_p.K657fs|EPHB2_uc001bgf.2_Frame_Shift_Del_p.K656fs|EPHB2_uc010odu.1_Frame_Shift_Del_p.K598fs	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	656	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CAAGACGCTCAAGTCGGGCTAC	0.589									Hereditary_Prostate_Cancer				12	38	---	---	---	---					
AHDC1	27245	broad.mit.edu	37	1	27874264	27874264	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:27874264delG	uc009vsy.2	-	6	5332	c.4363delC	c.(4363-4365)CACfs	p.H1455fs	AHDC1_uc009vsz.1_Frame_Shift_Del_p.H1455fs	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1455							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GAATCGTAGTGGGGCTGGCCC	0.692													2	4	---	---	---	---					
TMEM63A	9725	broad.mit.edu	37	1	226034840	226034842	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr1:226034840_226034842delCTG	uc001hpm.1	-	24	2573_2575	c.2323_2325delCAG	c.(2323-2325)CAGdel	p.Q775del		NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	775						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CACCATAGGTCTGCTGCTGCTGC	0.626													7	157	---	---	---	---					
PCDH17	27253	broad.mit.edu	37	13	58240609	58240610	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr13:58240609_58240610insT	uc001vhq.1	+	2	3465_3466	c.2573_2574insT	c.(2572-2574)AATfs	p.N858fs	PCDH17_uc010aec.1_Frame_Shift_Ins_p.N858fs|PCDH17_uc001vhr.1_5'Flank	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	858	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CAGACAGACAATTTTCCCGCAG	0.401													16	43	---	---	---	---					
STK11	6794	broad.mit.edu	37	19	1220396	1220403	+	Frame_Shift_Del	DEL	CCTGGAGT	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr19:1220396_1220403delCCTGGAGT	uc002lrl.1	+	4	1604_1611	c.489_496delCCTGGAGT	c.(487-498)GGCCTGGAGTACfs	p.G163fs		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	163_166	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.?(4)|p.Y156fs*87(4)|p.E165*(1)|p.G52_P179del(1)|p.G163C(1)|p.G163D(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		TGATTGACGGCCTGGAGTACCTGCATAG	0.649		14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			5	1	---	---	---	---					
MRPL33	9553	broad.mit.edu	37	2	27997313	27997313	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr2:27997313delA	uc002rlm.1	+	3	125	c.64delA	c.(64-66)AGCfs	p.S22fs	MRPL33_uc002rln.1_Intron	NM_004891	NP_004882	O75394	RM33_HUMAN	mitochondrial ribosomal protein L33 isoform a	22					translation	mitochondrion|ribosome	structural constituent of ribosome				0	Acute lymphoblastic leukemia(172;0.155)					GAGAATGGTGAGCGAAGCTGG	0.438													39	129	---	---	---	---					
PTPRG	5793	broad.mit.edu	37	3	62063933	62063934	+	Splice_Site	INS	-	A	A			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr3:62063933_62063934insA	uc003dlb.2	+	5	1334	c.615_splice	c.e5+1	p.Q205_splice	PTPRG_uc003dlc.2_Splice_Site_p.Q205_splice	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G						transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		ATTTTTTCAAGTAAGTTAACAG	0.337													9	33	---	---	---	---					
DMXL1	1657	broad.mit.edu	37	5	118506200	118506202	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr5:118506200_118506202delCTC	uc003ksd.2	+	24	5895_5897	c.5714_5716delCTC	c.(5713-5718)TCTCCT>TCT	p.P1906del	DMXL1_uc010jcl.1_In_Frame_Del_p.P1906del	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1906										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AAAGACTGTTCTCCTTCTTCTCC	0.379													28	69	---	---	---	---					
PRUNE2	158471	broad.mit.edu	37	9	79244208	79244208	+	Splice_Site	DEL	T	-	-			TCGA-EB-A1NK-01A-11D-A196-08	TCGA-EB-A1NK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4866043-bb1c-4602-889b-58d565b39d37	839c6ed4-8895-41db-a9e4-eae33505bd36	g.chr9:79244208delT	uc010mpk.2	-	16	9175	c.9051_splice	c.e16-1	p.S3017_splice	PRUNE2_uc011lsk.1_Splice_Site_p.S266_splice|PRUNE2_uc011lsl.1_Splice_Site_p.S281_splice|PRUNE2_uc011lsm.1_Splice_Site_p.S282_splice|PRUNE2_uc004akj.3_Splice_Site_p.S471_splice	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2						apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AATTTTGAACTAAAAAAAAAA	0.333													4	9	---	---	---	---					
