Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12520332	12520332	+	Silent	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:12520332C>T	uc001atv.2	+	67	12684	c.12543C>T	c.(12541-12543)TTC>TTT	p.F4181F	VPS13D_uc001atw.2_Silent_p.F4156F|VPS13D_uc001atx.2_Silent_p.F3368F|VPS13D_uc009vnl.2_RNA|VPS13D_uc010obd.1_Silent_p.F179F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	4180					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCAGCGGTTTCATATCTGGCC	0.507000													46	9					0	0	0.000781405	0	0
DPYD	1806	broad.mit.edu	37	1	98058935	98058935	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:98058935C>T	uc001drv.2	-	10	1104	c.967G>A	c.(967-969)GCC>ACC	p.A323T		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	323					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GAGTGACAGGCGCACATTCCT	0.453000													13	27					0	0	0.000219431	0	0
C4BPA	722	broad.mit.edu	37	1	207304923	207304923	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:207304923G>A	uc001hfo.2	+	8	1116	c.922G>A	c.(922-924)GCT>ACT	p.A308T		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	308	Sushi 5.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CATTCCACATGCTTCCTGGGA	0.428000													22	27					0	0	0.000878237	0	0
C1orf58	148362	broad.mit.edu	37	1	222903487	222903488	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:222903487_222903488CC>AA	uc001hnq.1	+	11	1352_1353	c.957_958CC>AA	c.(955-960)ACCCTA>ACAATA	p.L320I	C1orf58_uc010put.1_Missense_Mutation_p.L288I|C1orf58_uc010puu.1_Missense_Mutation_p.L320I|C1orf58_uc010puv.1_Missense_Mutation_p.L288I|uc001hnr.1_Splice_Site|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	320	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		TGAAGAACACCCTAGAAAAATG	0.282000													9	237					0	0	6.4e-05	0	0
PARP1	142	broad.mit.edu	37	1	226564999	226564999	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:226564999C>G	uc001hqd.3	-	13	1922	c.1751G>C	c.(1750-1752)TGG>TCG	p.W584S		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	584					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		CCTGAATATCCAATACCTGCA	0.522000								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					4	195					0	0	0.000602214	0	0
C1orf69	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr1:228362441C>A	uc001hsl.3	+	2	479	c.390C>A	c.(388-390)AGC>AGA	p.S130R	C1orf69_uc010pvw.1_5'UTR	NM_001010867	NP_001010867	Q5T440	CAF17_HUMAN	hypothetical protein LOC200205 precursor	130					glycine catabolic process|heme biosynthetic process	mitochondrion	aminomethyltransferase activity				0		Prostate(94;0.0405)				AGTGTGACAGCTCGGTGCAGG	0.662000													6	21					2.0095e-06	0.000109561	8.12818e-05	1	0
HPS5	11234	broad.mit.edu	37	11	18332943	18332943	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr11:18332943A>G	uc001mod.1	-	4	553	c.275T>C	c.(274-276)GTA>GCA	p.V92A	HPS5_uc001moe.1_5'UTR|HPS5_uc001mof.1_5'UTR	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	92						cytosol				ovary(1)|pancreas(1)|skin(1)	3						CCTGGTAGCTACAGCAACATA	0.289000									Hermansky-Pudlak_syndrome				11	48					0	0	0.000978159	0	0
TUT1	64852	broad.mit.edu	37	11	62343137	62343138	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr11:62343137_62343138CC>AA	uc001nto.2	-	9	2205_2206	c.2167_2168GG>TT	c.(2167-2169)GGG>TTG	p.G723L	EEF1G_uc001ntm.1_5'Flank|EEF1G_uc010rlw.1_5'Flank|EEF1G_uc001ntn.1_5'Flank|TUT1_uc001ntp.1_Missense_Mutation_p.G219L	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	685					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CCTGTCTTCCCCACCGTCCCCT	0.574000													12	527					0	0	6.4e-05	0	0
DSCAML1	57453	broad.mit.edu	37	11	117329513	117329513	+	Silent	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr11:117329513G>A	uc001prh.1	-	19	3707	c.3705C>T	c.(3703-3705)GAC>GAT	p.D1235D		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1175	Fibronectin type-III 3.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGCGTACGCCGTCCCCAGCCT	0.642000													7	13					0	0	8.12818e-05	0	0
NCAPD2	9918	broad.mit.edu	37	12	6619925	6619925	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr12:6619925T>G	uc001qoo.2	+	5	439	c.393T>G	c.(391-393)TTT>TTG	p.F131L	NCAPD2_uc009zen.1_Intron|NCAPD2_uc010sfd.1_Missense_Mutation_p.F86L	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	131	Interactions with SMC2 and SMC4.				cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						TGGAATCCTTTGAGACCATGG	0.478000													39	119					0	0	0.000781405	0	0
LRP6	4040	broad.mit.edu	37	12	12303861	12303862	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr12:12303861_12303862CG>AT	uc001rah.3	-	13	3044_3045	c.2902_2903CG>AT	c.(2902-2904)CGG>ATG	p.R968M	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.R968M	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	968	Extracellular (Potential).|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GTCAATGGCCCGGACATTCCGA	0.490000													14	620					0	0	6.4e-05	0	0
MARCH9	92979	broad.mit.edu	37	12	58151945	58151945	+	Silent	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr12:58151945C>T	uc001spx.1	+	3	980	c.568C>T	c.(568-570)CTG>TTG	p.L190L	MARCH9_uc001spy.2_Silent_p.L77L	NM_138396	NP_612405	Q86YJ5	MARH9_HUMAN	membrane-associated RING-CH protein IX	190	Helical; (Potential).					Golgi membrane|Golgi stack|integral to membrane|lysosomal membrane|trans-Golgi network	ligase activity|zinc ion binding				0	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			TGCCATAGTTCTGGGCTCGCT	0.567000													17	38					0	0	0.000566183	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493000													16	80					0	0	0.000295444	0	0
PCDH9	5101	broad.mit.edu	37	13	67801171	67801171	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr13:67801171T>C	uc001vik.2	-	2	2094	c.1402A>G	c.(1402-1404)ATT>GTT	p.I468V	PCDH9_uc001vil.2_Missense_Mutation_p.I468V|PCDH9_uc010thl.1_Missense_Mutation_p.I468V|PCDH9_uc001vin.3_Missense_Mutation_p.I468V	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	468	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TGGTTGAAAATTGGTGGGTTG	0.413000													3	118					0	0	6.4e-05	0	0
OR4N5	390437	broad.mit.edu	37	14	20612115	20612115	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr14:20612115C>T	uc010tla.1	+	1	221	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		GCATCCTACTCCTTCATTGTG	0.458000													109	146					0	0	0.000781405	0	0
ZNF219	51222	broad.mit.edu	37	14	21559287	21559287	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr14:21559287T>C	uc001vzr.2	-	5	1998	c.1577A>G	c.(1576-1578)TAC>TGC	p.Y526C	ZNF219_uc001vzs.2_Missense_Mutation_p.Y526C|ZNF219_uc010aik.1_Missense_Mutation_p.Y526C	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	526					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CGGACACTTGTAGGGCCGCTC	0.657000													5	11					0	0	3.59834e-05	0	0
FAM181A	90050	broad.mit.edu	37	14	94394974	94394974	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr14:94394974C>G	uc001ybz.1	+	3	836	c.529C>G	c.(529-531)CCA>GCA	p.P177A	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.P115A|FAM181A_uc001yca.1_Missense_Mutation_p.P115A	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	177											0						GGAGCAGCTCCCACAGAGGCA	0.632000													3	67					0	0	6.4e-05	0	0
DIO3	1735	broad.mit.edu	37	14	102028063	102028063	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr14:102028063G>T	uc010txq.1	+	1	376	c.152G>T	c.(151-153)CGG>CTG	p.R51L	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	51	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				CGCCGCCGCCGGGGGCAGCCC	0.657000													16	49					4.7546e-09	2.71012e-07	0.000422831	1	0
CIITA	4261	broad.mit.edu	37	16	11000359	11000359	+	Missense_Mutation	SNP	C	T	T	rs147670132		TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr16:11000359C>T	uc002dai.3	+	11	1143	c.1010C>T	c.(1009-1011)CCG>CTG	p.P337L	CIITA_uc002daj.3_Missense_Mutation_p.P338L|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.P337L|CIITA_uc002dah.2_Missense_Mutation_p.P289L|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	337					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TTTGCAGAGCCGGTGGAGCAG	0.642000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								12	21					0	0	0.000151284	0	0
OCEL1	79629	broad.mit.edu	37	19	17337903	17337903	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr19:17337903T>C	uc002nfp.2	+	3	349	c.347T>C	c.(346-348)TTT>TCT	p.F116S		NM_024578	NP_078854	Q9H607	OCEL1_HUMAN	occludin/ELL domain containing 1	116										central_nervous_system(1)	1						AAGATTGTGTTTGAGGATGAG	0.642000													52	62					0	0	0.000781405	0	0
LYG1	129530	broad.mit.edu	37	2	99909082	99909082	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr2:99909082C>A	uc002szy.2	-	4	315	c.65G>T	c.(64-66)TGG>TTG	p.W22L	MRPL30_uc002szl.1_Intron|LYG1_uc010yvo.1_Missense_Mutation_p.W22L	NM_174898	NP_777558	Q8N1E2	LYG1_HUMAN	lysozyme g-like protein 1 precursor	22					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity				0						ATAGCATCCCCAGTTGCTGCT	0.448000													24	25					1.10923e-09	6.6237e-08	0.000375601	1	0
RRBP1	6238	broad.mit.edu	37	20	17595518	17595518	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr20:17595518A>T	uc002wpv.1	-	25	3113	c.2759T>A	c.(2758-2760)CTA>CAA	p.L920Q	RRBP1_uc010zrp.1_Missense_Mutation_p.L93Q|RRBP1_uc002wpt.1_Missense_Mutation_p.L290Q|RRBP1_uc002wpu.2_Missense_Mutation_p.L694Q|RRBP1_uc002wpw.1_Missense_Mutation_p.L920Q|RRBP1_uc010gcl.1_Missense_Mutation_p.L694Q	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	1353	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						CTCTTTTTCTAGTCTCTCCTG	0.612000													18	77					0	0	0.000375601	0	0
FRG1B	284802	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	C	C	rs143761036	by1000genomes	TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr20:29625875T>C	uc010ztl.1	+	2	61	c.29T>C	c.(28-30)ATC>ACC	p.I10T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGTACAGAATCGCCCTGAAA	0.353000													4	99					0	0	8.12818e-05	0	0
C20orf71	128861	broad.mit.edu	37	20	31811717	31811717	+	Silent	SNP	G	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr20:31811717G>T	uc002wyr.2	+	2	436	c.228G>T	c.(226-228)CTG>CTT	p.L76L	C20orf71_uc002wys.2_Silent_p.L76L	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	76						extracellular region	lipid binding			ovary(1)|skin(1)	2						CCCCAGGGCTGGTGGGCTGGC	0.537000													17	59					1.15088e-07	6.41422e-06	0.000422831	1	0
BACE2	25825	broad.mit.edu	37	21	42540500	42540500	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr21:42540500A>C	uc002yyw.2	+	1	773	c.310A>C	c.(310-312)AAG>CAG	p.K104Q	BACE2_uc002yyx.2_Missense_Mutation_p.K104Q|BACE2_uc002yyy.2_Missense_Mutation_p.K104Q	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	104	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				CCCCCCGCAGAAGGTAGGGAC	0.697000													5	3					0	0	3.59834e-05	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15116176	15116176	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr3:15116176G>A	uc003bzm.1	-	14	2082	c.1468C>T	c.(1468-1470)CGG>TGG	p.R490W	ZFYVE20_uc010hek.1_Missense_Mutation_p.R490W	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	490	Necessary for the interaction with RAB4A.|Potential.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						TGCAGCTGCCGCAGGTTCTCC	0.622000													56	125					0	0	0.000781405	0	0
UBA3	9039	broad.mit.edu	37	3	69126959	69126959	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr3:69126959G>A	uc003dno.2	-	3	193	c.173C>T	c.(172-174)CCG>CTG	p.P58L	UBA3_uc003dnq.2_Missense_Mutation_p.P44L|UBA3_uc011bfy.1_5'UTR|UBA3_uc011bfz.1_5'UTR	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	58	Interaction with UBE2M N-terminus.				protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		TTCAGTGCTCGGTTCGAAATC	0.413000													19	455					0	0	0.000229342	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907292	164907292	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr3:164907292G>A	uc003fej.3	-	2	1771	c.1327C>T	c.(1327-1329)CGT>TGT	p.R443C	SLITRK3_uc003fek.2_Missense_Mutation_p.R443C	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	443	LRR 8.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TAGGAAATACGATTGTTCCCC	0.408000										HNSCC(40;0.11)			22	5					0	0	0.000375601	0	0
KCNIP4	80333	broad.mit.edu	37	4	20736327	20736328	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr4:20736327_20736328CG>AT	uc003gqe.2	-	5	493_494	c.409_410CG>AT	c.(409-411)CGG>ATG	p.R137M	KCNIP4_uc003gqf.1_Missense_Mutation_p.R133M|KCNIP4_uc003gqg.1_Missense_Mutation_p.R92M|KCNIP4_uc003gqh.1_Missense_Mutation_p.R129M|KCNIP4_uc003gqi.1_Missense_Mutation_p.R92M|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.R134M|KCNIP4_uc003gqd.3_Missense_Mutation_p.R117M	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	154	EF-hand 2.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				TACTGTCCCCCGGAGCAAAATG	0.312000													6	227					0	0	6.4e-05	0	0
PSD2	84249	broad.mit.edu	37	5	139219689	139219689	+	Silent	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr5:139219689C>T	uc003leu.1	+	14	2251	c.2046C>T	c.(2044-2046)GTC>GTT	p.V682V		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	682					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCACCCAGTCGAGAGGGGCA	0.567000													21	50					0	0	0.000229342	0	0
FARS2	10667	broad.mit.edu	37	6	5771581	5771581	+	Silent	SNP	G	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr6:5771581G>T	uc010jnv.1	+	7	1611	c.1275G>T	c.(1273-1275)CTG>CTT	p.L425L	FARS2_uc003mwr.2_Silent_p.L425L	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	425	FDX-ACB.				phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	AACGGACTCTGTCCCAGAGAG	0.582000													48	58					1.30409e-13	7.97722e-12	0.000781405	1	0
MOCS1	4337	broad.mit.edu	37	6	39874786	39874786	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr6:39874786C>T	uc003opb.2	-	10	1396	c.1258G>A	c.(1258-1260)GTG>ATG	p.V420M	MOCS1_uc003opa.2_3'UTR|MOCS1_uc003opc.2_Missense_Mutation_p.V404M|MOCS1_uc003opd.2_3'UTR|MOCS1_uc003ope.2_Missense_Mutation_p.V317M	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	420	Molybdenum cofactor biosynthesis protein C.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					AAAGTGGCCACCTGGCTGGAG	0.567000													19	73					0	0	0.000132079	0	0
SLC35B2	347734	broad.mit.edu	37	6	44224482	44224482	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr6:44224482A>C	uc003oxd.2	-	2	281	c.145T>G	c.(145-147)TTT>GTT	p.F49V	SLC35B2_uc011dvt.1_Silent_p.A3A|SLC35B2_uc011dvu.1_Intron	NM_178148	NP_835361	Q8TB61	S35B2_HUMAN	solute carrier family 35, member B2	49	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GGTACCATAAAGCTGGCATAG	0.582000													73	97					0	0	0.000781405	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	46					0	0	0.000491102	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146825823	146825823	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr7:146825823C>G	uc003weu.1	+	7	1494	c.978C>G	c.(976-978)AGC>AGG	p.S326R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	326	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCAAGCCCAGCTCCAGCAGTA	0.398000										HNSCC(39;0.1)			26	125					0	0	0.000586117	0	0
BLK	640	broad.mit.edu	37	8	11400840	11400840	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr8:11400840C>T	uc003wty.2	+	2	688	c.107C>T	c.(106-108)CCG>CTG	p.P36L	BLK_uc003wtz.2_Intron	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	36					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		AAGGACGCCCCGCCACTGCCG	0.413000													14	24					0	0	0.000422831	0	0
ECM2	1842	broad.mit.edu	37	9	95279998	95279998	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr9:95279998C>T	uc004ash.2	-	3	517	c.452G>A	c.(451-453)GGG>GAG	p.G151E	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.G151E|ECM2_uc011lty.1_Missense_Mutation_p.G151E|ECM2_uc004asg.2_Missense_Mutation_p.G151E|ECM2_uc011ltz.1_Missense_Mutation_p.G151E|ECM2_uc004asi.2_Missense_Mutation_p.G151E	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	151	VWFC.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						GCAGCATTCCCCTTCAGGTAT	0.463000													101	88					0	0	0.000781405	0	0
OR1J4	26219	broad.mit.edu	37	9	125281593	125281593	+	Silent	SNP	C	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr9:125281593C>A	uc011lyw.1	+	1	174	c.174C>A	c.(172-174)CCC>CCA	p.P58P		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCACACCCCCATGTTCTTCT	0.507000													46	106					1.32667e-27	8.31822e-26	0.000781405	1	0
MXRA5	25878	broad.mit.edu	37	X	3228915	3228915	+	Silent	SNP	G	A	A	rs41310268		TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chrX:3228915G>A	uc004crg.3	-	7	7486	c.7329C>T	c.(7327-7329)AAC>AAT	p.N2443N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2443	Ig-like C2-type 9.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGGGTTACCGTTGATCTTGG	0.587000													17	5					0	0	0.000175454	0	0
BEX2	84707	broad.mit.edu	37	X	102564760	102564760	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chrX:102564760G>A	uc004ekb.2	-	3	384	c.145C>T	c.(145-147)CCT>TCT	p.P49S	BEX2_uc004eka.2_Missense_Mutation_p.P78S	NM_032621	NP_116010	Q9BXY8	BEX2_HUMAN	brain expressed X-linked 2	49					apoptosis|cell cycle|regulation of apoptosis|regulation of cell cycle	cytoplasm|nucleus				ovary(1)	1						TTTCCTCTAGGCACACAGTAT	0.473000													13	38					0	0	0.00010058	0	0
CDR1	1038	broad.mit.edu	37	X	139866322	139866322	+	Silent	SNP	C	T	T			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chrX:139866322C>T	uc004fbg.1	-	1	402	c.210G>A	c.(208-210)TCG>TCA	p.S70S	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	70	23 X 6 AA approximate repeats.|12.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CCATAGCTTCCGAAAAATCCA	0.458000													62	13					0	0	0.000781405	0	0
FBRS	64319	broad.mit.edu	37	16	30680211	30680212	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr16:30680211_30680212insC	uc002dzd.3	+	11	980_981	c.717_718insC	c.(715-720)CGGCCCfs	p.R239fs	FBRS_uc002dzc.3_Frame_Shift_Ins_p.R151fs	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	239_240										ovary(1)	1			Colorectal(24;0.103)			CCTGGGTCCGGCCCCCTGAGGC	0.693													10	8	---	---	---	---					
MAMDC4	158056	broad.mit.edu	37	9	139751928	139751929	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EB-A24C-01A-11D-A197-08	TCGA-EB-A24C-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a07df10-1d29-4cbf-8ea7-e07bf1ba2a03	1dad4c6e-95b8-41c8-ae4f-5a3bf31f1b99	g.chr9:139751928_139751929insA	uc004cjs.2	+	18	2266_2267	c.2216_2217insA	c.(2215-2217)TCAfs	p.S739fs	MAMDC4_uc011mej.1_Frame_Shift_Ins_p.S76fs	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	818	MAM 5.|Extracellular (Potential).				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		TTTGAGGACTCAGACTGCGGCT	0.673													11	52	---	---	---	---					
