Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTOR	2475	broad.mit.edu	37	1	11300494	11300494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:11300494G>A	uc001asd.2	-	11	1773	c.1652C>T	c.(1651-1653)CCC>CTC	p.P551L		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	551					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GTGGCGAAGGGGTTTGTGCAT	0.582000													42	56					0	0	0.007835	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856060	12856060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:12856060C>T	uc001auj.1	+	4	1443	c.1340C>T	c.(1339-1341)CCC>CTC	p.P447L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	447											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCAGGCAGCCCAAGAGGATC	0.572000													54	319					0	0	0.003610	0	0
IGSF21	84966	broad.mit.edu	37	1	18661458	18661458	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:18661458G>A	uc001bau.1	+	4	761	c.378G>A	c.(376-378)AGG>AGA	p.R126R		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	126	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GCGCCACCAGGGAGAAGGTGG	0.612000													14	36					0	0	0.002450	0	0
EPHA8	2046	broad.mit.edu	37	1	22903209	22903209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:22903209G>A	uc001bfx.1	+	3	784	c.659G>A	c.(658-660)GGG>GAG	p.G220E	EPHA8_uc001bfw.2_Missense_Mutation_p.G220E	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	220	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCAGTGACGGGGGCCGACTCG	0.637000													18	44					0	0	0.006122	0	0
ZNF683	257101	broad.mit.edu	37	1	26691379	26691379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:26691379G>A	uc001bmg.1	-	4	776	c.658C>T	c.(658-660)CTC>TTC	p.L220F	ZNF683_uc001bmh.1_Missense_Mutation_p.L220F|ZNF683_uc009vsj.1_Missense_Mutation_p.L220F	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	220					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GGCAGCATGAGGAGGTGGGGA	0.607000													20	49					0	0	0.001523	0	0
PTPRU	10076	broad.mit.edu	37	1	29647298	29647298	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:29647298C>T	uc001bru.2	+	27	3929	c.3819C>T	c.(3817-3819)ATC>ATT	p.I1273I	PTPRU_uc001brv.2_Silent_p.I1269I|PTPRU_uc001brw.2_Silent_p.I1263I|PTPRU_uc009vtq.2_Silent_p.I1269I|PTPRU_uc009vtr.2_Silent_p.I1260I|PTPRU_uc001brx.2_5'UTR	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1273	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GCACCTCCATCGTCATGCTCA	0.617000													43	35					0	0	0.002852	0	0
CSMD2	114784	broad.mit.edu	37	1	33985221	33985221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:33985221C>T	uc001bxn.1	-	69	10390	c.10361G>A	c.(10360-10362)CGG>CAG	p.R3454Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R3598Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3454	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAATGTGGCCCGAACATTGGT	0.532000													100	219					0	0	0.003610	0	0
THRAP3	9967	broad.mit.edu	37	1	36755032	36755032	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:36755032G>A	uc001cae.3	+	5	1636	c.1412G>A	c.(1411-1413)TGG>TAG	p.W471*	THRAP3_uc001caf.3_Nonsense_Mutation_p.W471*|THRAP3_uc001cag.1_Nonsense_Mutation_p.W471*	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	471					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCAGGCAAATGGGAGGGCCTG	0.463000			T	USP6	aneurysmal bone cysts								27	78					0	0	0.005443	0	0
DMBX1	127343	broad.mit.edu	37	1	46977741	46977741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:46977741C>T	uc001cpx.2	+	4	739	c.724C>T	c.(724-726)CCT>TCT	p.P242S	DMBX1_uc001cpw.2_Missense_Mutation_p.P237S	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	242					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GACCATCACTCCTGTGGCCCC	0.627000													29	176					0	0	0.001786	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47366031	47366031	+	RNA	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:47366031G>A	uc001cqo.1	-	1		c.117C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						ACCTGAAACAGCAGCAGAGAC	0.557000													22	30					0	0	0.002780	0	0
LRRC40	55631	broad.mit.edu	37	1	70652993	70652993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:70652993G>A	uc001der.1	-	3	414	c.362C>T	c.(361-363)CCT>CTT	p.P121L		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	121	LRR 2.									ovary(1)	1						TATAGCAGAAGGAAGGGATGT	0.274000													29	57					0	0	0.002836	0	0
OLFM3	118427	broad.mit.edu	37	1	102302438	102302438	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:102302438T>G	uc001duf.2	-	2	344	c.273A>C	c.(271-273)GAA>GAC	p.E91D	OLFM3_uc001dug.2_Missense_Mutation_p.E71D|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_5'UTR|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	91	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CACCTACCTTTTCCAGTAGTT	0.443000													30	77					0	0	0.003755	0	0
AKNAD1	254268	broad.mit.edu	37	1	109380200	109380200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:109380200G>A	uc001dwa.2	-	7	1777	c.1508C>T	c.(1507-1509)GCC>GTC	p.A503V	AKNAD1_uc010ovb.1_Missense_Mutation_p.A210V|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	503										ovary(3)	3						GAAGGTGGAGGCCAAGTCATC	0.403000													31	55					0	0	0.006230	0	0
SPAG17	200162	broad.mit.edu	37	1	118548050	118548050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:118548050C>T	uc001ehk.2	-	32	4831	c.4763G>A	c.(4762-4764)GGA>GAA	p.G1588E		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1588						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		AAAAGTGTTTCCCTCAGGATC	0.428000													41	77					0	0	0.007835	0	0
Unknown	0	broad.mit.edu	37	1	148882037	148882037	+	RNA	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:148882037C>T	uc009wkv.1	+	3		c.258C>T								Homo sapiens cDNA, FLJ17483.																		GTGACAAATTCACTTTGAATC	0.353000													7	85					0	0	0.003080	0	0
SV2A	9900	broad.mit.edu	37	1	149885219	149885219	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:149885219G>A	uc001etg.2	-	2	665	c.174C>T	c.(172-174)TTC>TTT	p.F58F	SV2A_uc001eth.2_Silent_p.F58F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	58	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TGGGAGCAGGGAAGTCATCAT	0.547000													71	55					0	0	0.003610	0	0
THEM5	284486	broad.mit.edu	37	1	151824911	151824911	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:151824911T>C	uc009wnd.2	-	2	280	c.148A>G	c.(148-150)ACA>GCA	p.T50A		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	50							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TTCAAGTCTGTCTTCTCTGGC	0.512000													58	53					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152187761	152187761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:152187761C>T	uc001ezt.1	-	3	6420	c.6344G>A	c.(6343-6345)GGG>GAG	p.G2115E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2115	23.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGGACTGCCCTGAGCTAGA	0.587000													19	374					0	0	0.008361	0	0
S100A7L2	645922	broad.mit.edu	37	1	153410701	153410701	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:153410701C>T	uc010pdx.1	-	2	216	c.138G>A	c.(136-138)TTG>TTA	p.L46L		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCTCCTTCATCAAGTTCACCA	0.512000													17	54					0	0	0.006122	0	0
CRTC2	200186	broad.mit.edu	37	1	153921594	153921594	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:153921594C>T	uc010ped.1	-	12	1741	c.1671G>A	c.(1669-1671)GGG>GGA	p.G557G	DENND4B_uc001fdd.1_5'Flank|CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_Silent_p.G93G	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	557					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TACTCACATTCCCCAGGTTGA	0.587000													32	33					0	0	0.006230	0	0
SMG5	23381	broad.mit.edu	37	1	156233338	156233339	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:156233338_156233339CC>TT	uc001foc.3	-	13	2027_2028	c.1878_1879GG>AA	c.(1876-1881)TCGGAG>TCAAAG	p.E627K	SMG5_uc009wrv.2_Missense_Mutation_p.E112K	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	627					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TCACTCCCCTCCGACTCAGAGC	0.564000													43	55					0	0	0.004672	0	0
OR10R2	343406	broad.mit.edu	37	1	158450547	158450547	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:158450547G>T	uc010pik.1	+	1	880	c.880G>T	c.(880-882)GTG>TTG	p.V294L	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	294	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					AGACAGGCTGGTGACGGTGAC	0.458000													28	56					7.38237e-10	1.23039e-09	0.006320	1	0
SPTA1	6708	broad.mit.edu	37	1	158607904	158607904	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:158607904G>T	uc001fst.1	-	36	5307	c.5108C>A	c.(5107-5109)GCT>GAT	p.A1703D		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1703	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTGGTGTGCAGCTGCCAATTC	0.443000													38	118					1.90571e-15	3.20129e-15	0.004289	1	0
KLHDC9	126823	broad.mit.edu	37	1	161068775	161068775	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:161068775G>A	uc001fxr.2	+	1	622	c.450G>A	c.(448-450)CGG>CGA	p.R150R	KLHDC9_uc001fxq.2_5'UTR|KLHDC9_uc001fxs.2_Silent_p.R150R	NM_152366	NP_689579	Q8NEP7	KLDC9_HUMAN	kelch/ankyrin repeat containing cyclin A1	150											0	all_cancers(52;1.28e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGGCTGGCCGGGAGGGCGGTA	0.647000													9	10					0	0	0.004482	0	0
LAMC2	3918	broad.mit.edu	37	1	183209476	183209476	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:183209476T>C	uc001gqa.2	+	22	3592	c.3278T>C	c.(3277-3279)GTT>GCT	p.V1093A	LAMC2_uc001gpz.3_Missense_Mutation_p.V1093A|LAMC2_uc010poa.1_Missense_Mutation_p.V793A	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	1093	Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						AACGCTGGGGTTACAATCCAA	0.483000													19	84					0	0	0.008871	0	0
CACNA1S	779	broad.mit.edu	37	1	201028413	201028413	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:201028413C>T	uc001gvv.2	-	27	3656	c.3429G>A	c.(3427-3429)TCG>TCA	p.S1143S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1143	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCATCTGCTCCGACTGGTTGT	0.572000													7	72					0	0	0.004482	0	0
CACNA1S	779	broad.mit.edu	37	1	201063099	201063099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:201063099C>T	uc001gvv.2	-	3	536	c.309G>A	c.(307-309)ATG>ATA	p.M103I		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	103	I.|Helical; Name=S2 of repeat I; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CAATGATCTTCATGGCGGCTT	0.527000													20	59					0	0	0.003330	0	0
SPATA17	128153	broad.mit.edu	37	1	217947741	217947741	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:217947741G>A	uc001hlh.1	+	7	611	c.585G>A	c.(583-585)AAG>AAA	p.K195K	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Silent_p.K195K	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	195						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		AATTACAGAAGGCAAAGCCTT	0.423000													38	111					0	0	0.002522	0	0
MARK1	4139	broad.mit.edu	37	1	220805570	220805570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:220805570G>A	uc001hmn.3	+	11	1634	c.1037G>A	c.(1036-1038)CGA>CAA	p.R346Q	MARK1_uc009xdw.2_Missense_Mutation_p.R346Q|MARK1_uc010pun.1_Missense_Mutation_p.R346Q|MARK1_uc001hmm.3_Missense_Mutation_p.R324Q	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	346	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		GGCTTTGCACGAGATGAAATA	0.313000													159	141					0	0	0.003610	0	0
TP53BP2	7159	broad.mit.edu	37	1	223987610	223987611	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:223987610_223987611CC>TT	uc010pvb.1	-	11	1767_1768	c.1475_1476GG>AA	c.(1474-1476)CGG>CAA	p.R492Q	TP53BP2_uc001hod.2_Missense_Mutation_p.R363Q|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.R131Q	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	486					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		CCTGAGCATCCCGCAAGATATC	0.411000													29	32					0	0	0.004672	0	0
GUK1	2987	broad.mit.edu	37	1	228334611	228334611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:228334611G>A	uc001hsh.2	+	5	526	c.223G>A	c.(223-225)GAG>AAG	p.E75K	GUK1_uc001hsi.2_Missense_Mutation_p.E96K|GUK1_uc001hsj.2_Missense_Mutation_p.E15K|GUK1_uc010pvv.1_Missense_Mutation_p.E75K|GJC2_uc001hsk.2_5'Flank	NM_000858	NP_000849	Q16774	KGUA_HUMAN	guanylate kinase 1 isoform b	75	Guanylate kinase-like.				nucleobase, nucleoside and nucleotide interconversion|purine nucleotide metabolic process	cytosol	ATP binding|guanylate kinase activity				0		Prostate(94;0.0405)				CGAGCATGCCGAGTTCTCGGG	0.607000													30	95					0	0	0.004289	0	0
B3GALNT2	148789	broad.mit.edu	37	1	235647706	235647706	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:235647706A>G	uc001hxc.2	-	4	716	c.487T>C	c.(487-489)TTC>CTC	p.F163L	B3GALNT2_uc001hxd.1_Missense_Mutation_p.F204L	NM_152490	NP_689703	Q8NCR0	B3GL2_HUMAN	beta-1,3-N-acetylgalactosaminyltransferase 2	163	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			breast(1)	1	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.0539)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000117)			GCATCGTAGAACACTCCAAGA	0.483000													60	138					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237948051	237948051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:237948051G>A	uc001hyl.1	+	90	13159	c.13039G>A	c.(13039-13041)GAG>AAG	p.E4347K	RYR2_uc010pya.1_Missense_Mutation_p.E762K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4347					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGGAGATGGGGAGGAGGGAGA	0.542000													52	49					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237982384	237982384	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:237982384G>C	uc001hyl.1	+	101	14602	c.14482G>C	c.(14482-14484)GGG>CGG	p.G4828R	RYR2_uc010pyb.1_Missense_Mutation_p.G261R	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4828					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGGAGGGATCGGGGATGAAAT	0.408000													3	97					0	0	0.004672	0	0
OPN3	23596	broad.mit.edu	37	1	241761296	241761296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:241761296G>A	uc001hza.2	-	3	842	c.697C>T	c.(697-699)CGT>TGT	p.R233C	OPN3_uc001hzb.2_RNA|OPN3_uc001hzc.2_RNA	NM_014322	NP_055137	Q9H1Y3	OPN3_HUMAN	opsin 3	233	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|visual perception	integral to plasma membrane	G-protein coupled photoreceptor activity				0	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			TCCACACAACGAAGCTGCAGA	0.353000													6	22					0	0	0.001168	0	0
OR2G2	81470	broad.mit.edu	37	1	247752125	247752125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:247752125G>A	uc010pyy.1	+	1	464	c.464G>A	c.(463-465)GGA>GAA	p.G155E		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGCTCAGTGGAATAGCCACC	0.552000													121	99					0	0	0.003610	0	0
OR2T10	127069	broad.mit.edu	37	1	248756222	248756222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr1:248756222G>A	uc010pzn.1	-	1	848	c.848C>T	c.(847-849)CCT>CTT	p.P283L		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATTCAAGACAGGTGTAAGGAT	0.398000													24	52					0	0	0.002299	0	0
ITIH2	3698	broad.mit.edu	37	10	7786237	7786237	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:7786237A>G	uc001ijs.2	+	18	2564	c.2402A>G	c.(2401-2403)AAT>AGT	p.N801S		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	801					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAAGTCACGAATCAGAGGCAA	0.448000													21	13					0	0	0.002780	0	0
LIPF	8513	broad.mit.edu	37	10	90435346	90435346	+	Missense_Mutation	SNP	C	T	T	rs138641581	byFrequency	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:90435346C>T	uc001kfg.1	+	8	986	c.820C>T	c.(820-822)CGC>TGC	p.R274C	LIPF_uc001kfh.1_Missense_Mutation_p.R251C|LIPF_uc010qmt.1_Missense_Mutation_p.R284C|LIPF_uc010qmu.1_Missense_Mutation_p.R241C	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	274					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TTTCTAGAGTCGCTTGGATGT	0.333000													17	12					0	0	0.007413	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540287	96540287	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:96540287C>T	uc010qnz.1	+	4	513	c.513C>T	c.(511-513)GGC>GGT	p.G171G	CYP2C19_uc009xus.1_Silent_p.G36G|CYP2C19_uc010qny.1_Silent_p.G149G	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	171					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCATCCTGGGCTGTGCTCCCT	0.328000													54	44					0	0	0.003610	0	0
C10orf81	79949	broad.mit.edu	37	10	115531737	115531737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:115531737G>A	uc001lat.1	+	7	1105	c.543G>A	c.(541-543)ATG>ATA	p.M181I	C10orf81_uc001lar.1_Missense_Mutation_p.M187I|C10orf81_uc009xyc.1_Missense_Mutation_p.M99I|C10orf81_uc001las.1_Missense_Mutation_p.M99I|C10orf81_uc001lau.1_Missense_Mutation_p.M1I	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	181										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		AGCATTTAATGGAACAAAGTT	0.343000													24	25					0	0	0.002780	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118225585	118225585	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:118225585A>G	uc001lcl.3	+	8	933	c.832A>G	c.(832-834)AAC>GAC	p.N278D		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	278					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		CTTTGACTGTAACCATGCCCG	0.338000													28	28					0	0	0.008361	0	0
SLC18A2	6571	broad.mit.edu	37	10	119014796	119014797	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:119014796_119014797CC>TT	uc001ldd.1	+	7	740_741	c.709_710CC>TT	c.(709-711)CCC>TTC	p.P237F	SLC18A2_uc009xyy.1_Missense_Mutation_p.P34F	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	237	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	AGTGGGCCCCCCCTTCGGGAGT	0.584000													21	19					0	0	0.004672	0	0
LOC653544	653544	broad.mit.edu	37	10	135491113	135491113	+	Missense_Mutation	SNP	G	A	A	rs150899513	by1000genomes	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr10:135491113G>A	uc010qvi.1	+	1	835	c.724G>A	c.(724-726)GCC>ACC	p.A242T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	242						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCGCCTTCGCCCACACCGG	0.776000													11	18					0	0	0.004007	0	0
BRSK2	9024	broad.mit.edu	37	11	1471968	1471968	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:1471968A>G	uc001lti.2	+	14	1825	c.1439A>G	c.(1438-1440)AAC>AGC	p.N480S	BRSK2_uc009ycv.1_Missense_Mutation_p.N502S|BRSK2_uc001lth.1_Missense_Mutation_p.N480S|BRSK2_uc001ltj.2_Missense_Mutation_p.N480S|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Missense_Mutation_p.N480S|BRSK2_uc001ltm.2_Missense_Mutation_p.N526S|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA|BRSK2_uc009ycw.2_5'UTR	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	480					establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		GCGCGGCTCAACTCCATCAAG	0.687000													5	13					0	0	0.000602	0	0
OR5P2	120065	broad.mit.edu	37	11	7817644	7817644	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:7817644G>T	uc001mfp.1	-	1	846	c.846C>A	c.(844-846)AAC>AAA	p.N282K		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGATCAGGGGGTTCAACATGG	0.423000													12	67					1.08611e-07	1.78913e-07	0.000978	1	0
STK33	65975	broad.mit.edu	37	11	8494754	8494754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:8494754C>T	uc001mgi.1	-	2	1214	c.295G>A	c.(295-297)GGA>AGA	p.G99R	STK33_uc001mgj.1_Missense_Mutation_p.G99R|STK33_uc001mgk.1_Missense_Mutation_p.G99R|STK33_uc010rbn.1_Missense_Mutation_p.G58R|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	99						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GGAACTTTTCCTTCTGTAAAG	0.378000													35	120					0	0	0.006999	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077323	19077323	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:19077323G>A	uc001mph.2	-	2	715	c.627C>T	c.(625-627)ATC>ATT	p.I209I		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	209	Cytoplasmic (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						AGCCACAGAGGATCCTGACCA	0.547000													10	23					0	0	0.008291	0	0
OR8I2	120586	broad.mit.edu	37	11	55861168	55861169	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:55861168_55861169CC>TT	uc010rix.1	+	1	385_386	c.385_386CC>TT	c.(385-387)CCC>TTC	p.P129F		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					AATCTGCAATCCCTTACTGTAT	0.441000													28	65					0	0	0.004672	0	0
FAM111A	63901	broad.mit.edu	37	11	58919259	58919259	+	Silent	SNP	C	T	T	rs148380599		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:58919259C>T	uc010rkp.1	+	5	345	c.118C>T	c.(118-120)CTA>TTA	p.L40L	FAM111A_uc010rkq.1_Silent_p.L40L|FAM111A_uc010rkr.1_Silent_p.L40L|FAM111A_uc001nno.2_Silent_p.L40L|FAM111A_uc001nnp.2_Silent_p.L40L|FAM111A_uc001nnq.2_Silent_p.L40L	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	40					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				CAGTACTTCTCTAATGAGGAT	0.393000													28	77					0	0	0.001786	0	0
PACS1	55690	broad.mit.edu	37	11	65984200	65984200	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:65984200T>G	uc001oha.1	+	7	1066	c.932T>G	c.(931-933)GTG>GGG	p.V311G	PACS1_uc001ogz.1_Missense_Mutation_p.V311G	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	311					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CTCCGGAAAGTGAAGAAGACC	0.527000													11	29					0	0	0.001368	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681192	106681192	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:106681192T>G	uc001pjg.1	-	5	1609	c.1219A>C	c.(1219-1221)AAA>CAA	p.K407Q	GUCY1A2_uc010rvo.1_Missense_Mutation_p.K428Q|GUCY1A2_uc009yxn.1_Missense_Mutation_p.K407Q	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	407					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		ATTTGTCCTTTGACTTCCATC	0.358000													11	36					0	0	0.002450	0	0
NCAM1	4684	broad.mit.edu	37	11	113076293	113076293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:113076293G>A	uc009yyq.1	+	4	735	c.41G>A	c.(40-42)GGG>GAG	p.G14E	NCAM1_uc001pno.2_Missense_Mutation_p.G14E	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	132	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		TTCCGGGAGGGGGAAGATGCC	0.502000													28	51					0	0	0.007291	0	0
MPZL2	10205	broad.mit.edu	37	11	118133342	118133342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:118133342G>A	uc001psn.2	-	3	388	c.247C>T	c.(247-249)CCC>TCC	p.P83S	MPZL2_uc001pso.2_Missense_Mutation_p.P83S|MPZL2_uc001psp.1_Missense_Mutation_p.P83S	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	83	Extracellular (Potential).|Ig-like V-type.				anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		GGTTGGAAGGGATCTATGTGG	0.527000													12	29					0	0	0.000978	0	0
TRIM29	23650	broad.mit.edu	37	11	120008047	120008047	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:120008047C>T	uc001pwz.2	-	1	817	c.693G>A	c.(691-693)ACG>ACA	p.T231T	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	231	B box-type.				transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		AGAGCTCCATCGTCTTGCCAT	0.607000													21	35					0	0	0.001882	0	0
OR8B4	283162	broad.mit.edu	37	11	124294729	124294729	+	Silent	SNP	G	A	A	rs151066825		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:124294729G>A	uc010sak.1	-	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ATCCCACAAGGATAAACTCAG	0.488000													6	46					0	0	0.001168	0	0
PRB3	5544	broad.mit.edu	37	12	11420585	11420585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:11420585G>A	uc001qzs.2	-	3	636	c.598C>T	c.(598-600)CGT>TGT	p.R200C	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	200	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			TTTCCCGGACGAGGTGGGGGA	0.637000													47	275					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	12	31307356	31307356	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:31307356T>C	uc010sjy.1	-	7	724	c.724A>G	c.(724-726)AAA>GAA	p.K242E						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ATTTGGGTTTTCCCTTGCACA	0.383000													3	11					0	0	0.000248	0	0
PKP2	5318	broad.mit.edu	37	12	32949190	32949190	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:32949190G>C	uc001rlj.3	-	12	2457	c.2342C>G	c.(2341-2343)ACA>AGA	p.T781R	PKP2_uc001rlk.3_Missense_Mutation_p.T737R|PKP2_uc010skj.1_Missense_Mutation_p.T734R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	781	ARM 7.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ACTCGGGACTGTGTCAGGAAT	0.378000													8	23					0	0	0.004482	0	0
C12orf40	283461	broad.mit.edu	37	12	40114730	40114730	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:40114730A>G	uc001rmc.2	+	13	1803	c.1636A>G	c.(1636-1638)AAA>GAA	p.K546E	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	546										ovary(6)	6						AAACGATGACAAAATTCACAA	0.333000													16	36					0	0	0.007413	0	0
SPRYD3	84926	broad.mit.edu	37	12	53460414	53460414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:53460414C>T	uc001sbt.1	-	9	985	c.964G>A	c.(964-966)GGG>AGG	p.G322R	SPRYD3_uc010snw.1_Missense_Mutation_p.G148R	NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	322										central_nervous_system(1)	1						ATGATGTCCCCTTTGTAACAG	0.587000											OREG0021856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	9					0	0	0.004482	0	0
OR6C68	403284	broad.mit.edu	37	12	55886839	55886839	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:55886839C>T	uc010spo.1	+	1	693	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCTAAAATTCCCTTCTGTTC	0.358000													11	19					0	0	0.008291	0	0
CAPS2	84698	broad.mit.edu	37	12	75685567	75685567	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:75685567G>A	uc001sxk.3	-	14	1451	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I	CAPS2_uc001sxm.3_Silent_p.I186I|CAPS2_uc009zsa.2_Silent_p.I8I|CAPS2_uc001sxi.3_Silent_p.I154I|CAPS2_uc001sxj.3_Silent_p.I329I|CAPS2_uc001sxl.3_Silent_p.I399I	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	418							calcium ion binding			ovary(2)	2						TTTCTTGAATGATTATATCAT	0.313000													22	21					0	0	0.006320	0	0
TMTC2	160335	broad.mit.edu	37	12	83290317	83290317	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:83290317A>G	uc001szt.2	+	3	1807	c.1375A>G	c.(1375-1377)ACA>GCA	p.T459A	TMTC2_uc001szr.1_Missense_Mutation_p.T459A|TMTC2_uc001szs.1_Missense_Mutation_p.T459A|TMTC2_uc010suk.1_Missense_Mutation_p.T214A	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	459	Helical; (Potential).					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						TTTTTATGCTACAGCTACACT	0.413000													22	19					0	0	0.001523	0	0
KIAA1033	23325	broad.mit.edu	37	12	105538630	105538630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:105538630C>T	uc001tld.2	+	22	2401	c.2314C>T	c.(2314-2316)CCC>TCC	p.P772S	KIAA1033_uc010swr.1_Missense_Mutation_p.P773S|KIAA1033_uc010sws.1_Missense_Mutation_p.P584S	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	772					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						GGCACATCTTCCCAGTCAGAC	0.383000													20	63					0	0	0.002780	0	0
RAD9B	144715	broad.mit.edu	37	12	110960065	110960065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:110960065G>A	uc001trf.3	+	10	1112	c.974G>A	c.(973-975)AGG>AAG	p.R325K	RAD9B_uc001trg.3_Missense_Mutation_p.R325K|RAD9B_uc010sya.1_Missense_Mutation_p.R256K|RAD9B_uc001tre.3_Missense_Mutation_p.R253K|RAD9B_uc001trd.3_Missense_Mutation_p.R167K	NM_152442	NP_689655	Q6WBX8	RAD9B_HUMAN	RAD9 homolog B	322					cell cycle checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding			pancreas(1)|skin(1)	2						GCACCAAGAAGGCTTTATCCT	0.423000													8	9					0	0	0.003080	0	0
TMEM132B	114795	broad.mit.edu	37	12	126135452	126135452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr12:126135452G>A	uc001uhe.1	+	7	1860	c.1852G>A	c.(1852-1854)GAC>AAC	p.D618N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D130N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	618	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TCAGTTACAGGACGGCAGGAC	0.597000													10	31					0	0	0.006214	0	0
LOC220429	220429	broad.mit.edu	37	13	50466754	50466754	+	Silent	SNP	T	C	C	rs60589832	by1000genomes	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr13:50466754T>C	uc001vdk.2	+	1	2210	c.2028T>C	c.(2026-2028)GAT>GAC	p.D676D		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						ATGTGCCTGATTCATCTCTCC	0.453000													6	27					0	0	0.004482	0	0
OR4L1	122742	broad.mit.edu	37	14	20528879	20528879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:20528879C>T	uc001vwn.1	+	1	676	c.676C>T	c.(676-678)CCA>TCA	p.P226S		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GGTCAGTGTACCAAAAAAATC	0.438000													41	76					0	0	0.003214	0	0
TEP1	7011	broad.mit.edu	37	14	20853249	20853250	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:20853249_20853250CC>TT	uc001vxe.2	-	21	3041_3042	c.3001_3002GG>AA	c.(3001-3003)GGG>AAG	p.G1001K	TEP1_uc010ahk.2_Missense_Mutation_p.G351K|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.G893K|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1001					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CACAGAGCGCCCTGAAGGGTAC	0.594000													19	53					0	0	0.004672	0	0
CHD8	57680	broad.mit.edu	37	14	21873466	21873466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:21873466G>A	uc001was.1	-	16	2466	c.2372C>T	c.(2371-2373)TCC>TTC	p.S791F	CHD8_uc001war.1_Missense_Mutation_p.S687F|CHD8_uc001wav.1_Missense_Mutation_p.S233F	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1070					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GGAAAGGAAGGAGAAATTCTT	0.408000													7	13					0	0	0.003080	0	0
SYNE2	23224	broad.mit.edu	37	14	64465735	64465735	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:64465735C>T	uc001xgm.2	+	27	3687	c.3457C>T	c.(3457-3459)CAG>TAG	p.Q1153*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.Q1153*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1153	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTCTTGTCTGCAGGCTAAACT	0.363000													7	47					0	0	0.001984	0	0
SLC8A3	6547	broad.mit.edu	37	14	70515650	70515650	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:70515650G>A	uc001xly.2	-	7	2995	c.2241C>T	c.(2239-2241)CCC>CCT	p.P747P	SLC8A3_uc001xlu.2_Silent_p.P104P|SLC8A3_uc001xlv.2_Silent_p.P118P|SLC8A3_uc001xlw.2_Silent_p.P744P|SLC8A3_uc001xlx.2_Silent_p.P745P|SLC8A3_uc001xlz.2_Silent_p.P741P|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Silent_p.P104P	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	747	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ACTCTGTGGGGGGCACACAGG	0.597000													7	23					0	0	0.001984	0	0
SPATA7	55812	broad.mit.edu	37	14	88904536	88904536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:88904536C>T	uc001xwq.2	+	12	1721	c.1570C>T	c.(1570-1572)CAT>TAT	p.H524Y	SPATA7_uc001xwr.2_Missense_Mutation_p.H492Y|SPATA7_uc001xws.2_Missense_Mutation_p.H460Y|SPATA7_uc001xwt.2_Missense_Mutation_p.H418Y|SPATA7_uc001xwu.2_Intron	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	524					response to stimulus|visual perception					ovary(1)	1						GGATGAAAATCATCCAAGTAT	0.333000													16	70					0	0	0.004990	0	0
PPP4R4	57718	broad.mit.edu	37	14	94707091	94707091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr14:94707091C>T	uc001ycs.1	+	9	1089	c.935C>T	c.(934-936)TCT>TTT	p.S312F		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	312						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						ATTCTTATTTCTTTATCTTTC	0.284000													9	50					0	0	0.006214	0	0
MAP1A	4130	broad.mit.edu	37	15	43815653	43815653	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:43815653T>C	uc001zrt.2	+	4	2449	c.1982T>C	c.(1981-1983)ATG>ACG	p.M661T		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	661						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TTAGAAGAAATGGAGGAGGTA	0.478000													7	12					0	0	0.003080	0	0
FBN1	2200	broad.mit.edu	37	15	48704822	48704822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:48704822G>A	uc001zwx.1	-	65	8498	c.8170C>T	c.(8170-8172)CCC>TCC	p.P2724S	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2724					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCCCGTTTGGGGTAGCCATTG	0.517000													56	115					0	0	0.003610	0	0
C15orf33	196951	broad.mit.edu	37	15	49800546	49800546	+	Splice_Site	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:49800546C>T	uc001zxl.2	-	11	1169	c.875_splice	c.e11-1	p.G292_splice	C15orf33_uc001zxm.2_Splice_Site_p.G258_splice	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951											ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GGTTTTAAACCTGTTAATATA	0.299000													15	43					0	0	0.003163	0	0
AP4E1	23431	broad.mit.edu	37	15	51221267	51221267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:51221267C>T	uc001zyx.1	+	6	634	c.604C>T	c.(604-606)CAA>TAA	p.Q202*	AP4E1_uc010ufi.1_Nonsense_Mutation_p.Q202*|AP4E1_uc010ufj.1_RNA|AP4E1_uc010ufk.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	202					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		TGCTCCTAATCAAGTACAACA	0.353000													14	27					0	0	0.002450	0	0
MYO1E	4643	broad.mit.edu	37	15	59516941	59516941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:59516941C>T	uc002aga.2	-	8	1096	c.724G>A	c.(724-726)GGC>AGC	p.G242S		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	242	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TTGTATGAGCCCGAGAGGCTC	0.557000													17	45					0	0	0.004007	0	0
FAM81A	145773	broad.mit.edu	37	15	59752222	59752222	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:59752222C>T	uc002agc.2	+	3	298	c.111C>T	c.(109-111)ATC>ATT	p.I37I	FAM81A_uc010uha.1_Silent_p.I37I	NM_152450	NP_689663	Q8TBF8	FA81A_HUMAN	hypothetical protein LOC145773	37										ovary(1)	1						AAGACAGGATCCTCTGCCATG	0.537000													8	21					0	0	0.003080	0	0
ITGA11	22801	broad.mit.edu	37	15	68643096	68643096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:68643096C>T	uc002ari.2	-	9	1006	c.919G>A	c.(919-921)GGG>AGG	p.G307R	ITGA11_uc010bib.2_Missense_Mutation_p.G307R	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	307	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGATTGATCCCCCTGCGGTTG	0.502000													28	53					0	0	0.008361	0	0
CYP1A1	1543	broad.mit.edu	37	15	75013590	75013590	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr15:75013590G>A	uc002ayp.3	-	5	1238	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Silent_p.I108I|CYP1A1_uc010bjx.2_Silent_p.I108I|CYP1A1_uc002ayq.3_Silent_p.I372I|CYP1A1_uc010bjy.2_Silent_p.I372I|CYP1A1_uc010bjz.1_Silent_p.I108I	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	372					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	AGGTCTCCAGGATGAAGGCCT	0.577000									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				29	87					0	0	0.008361	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266097	3266097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:3266097G>A	uc010uwv.1	+	1	536	c.388G>A	c.(388-390)GCT>ACT	p.A130T		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						CCTGCTGATGGCTCGACTCTC	0.532000													13	20					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	16	16465411	16465411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:16465411C>T	uc002dey.2	+	1	415	c.128C>T	c.(127-129)TCC>TTC	p.S43F						SubName: Full=cDNA FLJ42525 fis, clone BRACE3001391, highly similar to Polycystin;																		TCCGCCAACTCCGTTGTGGTC	0.662000													19	27					0	0	0.001882	0	0
TMC7	79905	broad.mit.edu	37	16	19047031	19047031	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:19047031G>A	uc002dfq.2	+	7	1021	c.891G>A	c.(889-891)CGG>CGA	p.R297R	TMC7_uc010vao.1_Silent_p.R297R|TMC7_uc002dfp.2_Silent_p.R297R|TMC7_uc010vap.1_Silent_p.R187R	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	297	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						ACCTGATTCGGAGTGAGGAGC	0.483000													26	58					0	0	0.007291	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163536	32163536	+	RNA	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:32163536C>T	uc002ecx.2	-	2		c.235G>A				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						GTGCCTTCTCCAAACTCATCG	0.577000													11	122					0	0	0.001368	0	0
SLC9A5	6553	broad.mit.edu	37	16	67293840	67293840	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:67293840G>A	uc002esm.2	+	12	1896	c.1833G>A	c.(1831-1833)CCG>CCA	p.P611P	SLC9A5_uc010cee.2_Silent_p.P316P|SLC9A5_uc010vji.1_Silent_p.P115P|uc002esn.1_5'Flank	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	611					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		TCTACAAGCCGCGCCGTAGGG	0.597000													5	16					0	0	0.003080	0	0
HYDIN	54768	broad.mit.edu	37	16	71007919	71007919	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:71007919A>G	uc002ezr.2	-	34	5167	c.5039T>C	c.(5038-5040)GTT>GCT	p.V1680A		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1681										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGGCCCTCCAACCACCTAGAG	0.483000													20	38					0	0	0.003954	0	0
PHLPP2	23035	broad.mit.edu	37	16	71686892	71686892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:71686892G>A	uc002fax.2	-	17	2624	c.2618C>T	c.(2617-2619)TCC>TTC	p.S873F	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Missense_Mutation_p.S806F	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	873	PP2C-like.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						GAGAGCGGAGGAGCCCAACTT	0.517000													22	24					0	0	0.003954	0	0
ZNF821	55565	broad.mit.edu	37	16	71894328	71894328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr16:71894328G>A	uc010vmj.1	-	7	1208	c.832C>T	c.(832-834)CGC>TGC	p.R278C	ATXN1L_uc010vmi.1_Intron|ZNF821_uc002fbe.2_Missense_Mutation_p.R128C|ZNF821_uc002fbf.2_Missense_Mutation_p.R236C|ZNF821_uc002fbg.3_Missense_Mutation_p.R128C|ZNF821_uc002fbh.3_Missense_Mutation_p.R236C|ZNF821_uc002fbi.3_Missense_Mutation_p.R75C	NM_017530	NP_060000	O75541	ZN821_HUMAN	zinc finger protein 821	278	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTGGCCGTGCGCTCTCGTTCC	0.627000													22	48					0	0	0.003330	0	0
OR3A1	4994	broad.mit.edu	37	17	3195591	3195591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:3195591G>A	uc002fvh.1	-	1	286	c.286C>T	c.(286-288)CCC>TCC	p.P96S		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						GCCCCACAGGGAACTGCACGC	0.557000													22	47					0	0	0.003330	0	0
SPNS3	201305	broad.mit.edu	37	17	4356416	4356416	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:4356416C>T	uc002fxt.2	+	8	1073	c.1029C>T	c.(1027-1029)CTC>CTT	p.L343L	SPNS3_uc002fxu.2_Silent_p.L216L|SPNS3_uc002fxv.2_Silent_p.L27L	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	343	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTGAGCCCCTCATCTGCGCCT	0.607000													47	95					0	0	0.003610	0	0
MPDU1	9526	broad.mit.edu	37	17	7490807	7490807	+	Missense_Mutation	SNP	G	C	C	rs147912291		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:7490807G>C	uc002ghw.2	+	7	898	c.682G>C	c.(682-684)GCC>CCC	p.A228P	MPDU1_uc010vub.1_Missense_Mutation_p.A149P|MPDU1_uc002ghx.2_3'UTR|MPDU1_uc010vuc.1_Intron	NM_004870	NP_004861	O75352	MPU1_HUMAN	mannose-P-dolichol utilization defect 1	228	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|protein folding	endoplasmic reticulum membrane|integral to membrane|mitochondrion	protein binding			central_nervous_system(1)	1						CGGCCTCATCGCCGCCCAGCT	0.562000													42	66					0	0	0.002522	0	0
MYO15A	51168	broad.mit.edu	37	17	18077192	18077192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:18077192G>A	uc010vxh.1	+	64	10786	c.10448G>A	c.(10447-10449)GGG>GAG	p.G3483E	MYO15A_uc010vxi.1_Missense_Mutation_p.G747E|MYO15A_uc002gsl.2_Silent_p.G515G|MYO15A_uc010vxm.1_Intron|MYO15A_uc010cpv.2_Intron	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3483	Tail.|FERM.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					ATTGCGCTGGGGGACGTGGCG	0.642000													17	29					0	0	0.007413	0	0
CCR7	1236	broad.mit.edu	37	17	38711075	38711075	+	Silent	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:38711075G>T	uc002huw.2	-	3	1119	c.1056C>A	c.(1054-1056)CTC>CTA	p.L352L		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	352	Cytoplasmic (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				ACCACTGCCGGAGCTGCTCCT	0.607000													23	58					2.39556e-15	4.00833e-15	0.002780	1	0
EZH1	2145	broad.mit.edu	37	17	40858189	40858189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:40858189G>A	uc002iaz.2	-	16	1820	c.1675C>T	c.(1675-1677)CCT>TCT	p.P559S	EZH1_uc002iba.2_Missense_Mutation_p.P550S|EZH1_uc010wgt.1_Missense_Mutation_p.P489S|EZH1_uc010wgu.1_Missense_Mutation_p.P565S|EZH1_uc010wgv.1_Missense_Mutation_p.P519S|EZH1_uc010wgw.1_Missense_Mutation_p.P420S|EZH1_uc010cyp.2_Missense_Mutation_p.P460S|EZH1_uc010cyq.2_Missense_Mutation_p.P476S|EZH1_uc010cyo.1_Missense_Mutation_p.P222S	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	559	Cys-rich.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		CGACAGCCAGGGAAACGATTC	0.507000													23	42					0	0	0.003330	0	0
G6PC	2538	broad.mit.edu	37	17	41061429	41061429	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:41061429C>T	uc002icb.1	+	4	635	c.556C>T	c.(556-558)CTG>TTG	p.L186L	G6PC_uc010whf.1_Missense_Mutation_p.P162L	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	186	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		TGCTGGAGTCCTGTCAGGTAT	0.498000									Glycogen_Storage_Disease_type_Ia				42	98					0	0	0.007835	0	0
DDX42	11325	broad.mit.edu	37	17	61890605	61890605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:61890605C>T	uc002jbu.2	+	16	1950	c.1693C>T	c.(1693-1695)CCT>TCT	p.P565S	DDX42_uc002jbv.2_Missense_Mutation_p.P565S|DDX42_uc002jbw.1_Missense_Mutation_p.P301S|DDX42_uc002jbx.2_Missense_Mutation_p.P301S|DDX42_uc002jby.2_Missense_Mutation_p.P111S|DDX42_uc010wps.1_5'Flank	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	565	Helicase C-terminal.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						TCTGGACATTCCTTCAATTAA	0.428000													13	25					0	0	0.001855	0	0
TNRC6C	57690	broad.mit.edu	37	17	76089158	76089158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:76089158C>T	uc002jud.2	+	16	4715	c.4115C>T	c.(4114-4116)TCT>TTT	p.S1372F	TNRC6C_uc002juf.2_Missense_Mutation_p.S1369F	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1372	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CGTGCCAAATCTGACAGTGAT	0.502000													19	29					0	0	0.001882	0	0
POTEC	388468	broad.mit.edu	37	18	14511986	14511986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:14511986G>A	uc010dln.2	-	11	1994	c.1540C>T	c.(1540-1542)CTT>TTT	p.L514F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	514	Potential.									skin(3)	3						TTATGACTAAGAGAAAGCTAA	0.313000													5	14					0	0	0.000602	0	0
DSC1	1823	broad.mit.edu	37	18	28710554	28710554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:28710554C>T	uc002kwn.2	-	16	2870	c.2608G>A	c.(2608-2610)GAA>AAA	p.E870K	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	870	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CCCTCTTCTTCCTGCCGATCG	0.423000													24	56					0	0	0.003954	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093416	30093416	+	RNA	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:30093416A>G	uc010dmc.2	+	1		c.1791A>G				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CCCTTGCTGAACCCTGAGATT	0.532000													12	25					0	0	0.000978	0	0
SLC14A2	8170	broad.mit.edu	37	18	43247899	43247899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:43247899C>T	uc010dnj.2	+	15	2140	c.1819C>T	c.(1819-1821)CTC>TTC	p.L607F	SLC14A2_uc002lbe.2_Missense_Mutation_p.L607F	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	607	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CATCCTCGGCCTCTTCATCCA	0.557000													28	71					0	0	0.006320	0	0
DOK6	220164	broad.mit.edu	37	18	67345018	67345018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:67345018G>A	uc002lkl.2	+	4	528	c.338G>A	c.(337-339)GGG>GAG	p.G113E		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	113							insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GAGTGTCTGGGGACCAGGCTC	0.557000													15	61					0	0	0.003163	0	0
ZNF407	55628	broad.mit.edu	37	18	72343420	72343420	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr18:72343420A>T	uc002llw.2	+	1	502	c.445A>T	c.(445-447)ACT>TCT	p.T149S	ZNF407_uc010xfc.1_Missense_Mutation_p.T149S|ZNF407_uc010dqu.1_Missense_Mutation_p.T149S|ZNF407_uc002llu.2_Missense_Mutation_p.T148S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GAAAACAGACACTGAAAAAAC	0.428000													10	30					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9089201	9089201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:9089201G>A	uc002mkp.2	-	1	2818	c.2614C>T	c.(2614-2616)CCA>TCA	p.P872S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	872	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACACAGATGGATTCGAAGTT	0.493000													11	31					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9090527	9090527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:9090527C>T	uc002mkp.2	-	1	1492	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	430	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAAGTTCCTTCTGTTTCCTTT	0.498000													39	67					0	0	0.005524	0	0
COL5A3	50509	broad.mit.edu	37	19	10088149	10088149	+	Splice_Site	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:10088149C>T	uc002mmq.1	-	43	3213	c.3127_splice	c.e43-1	p.G1043_splice		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein						collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CACGTTCTCCCTGTTGTGGGG	0.657000													31	46					0	0	0.002096	0	0
DNMT1	1786	broad.mit.edu	37	19	10251856	10251856	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:10251856C>A	uc002mng.2	-	30	3451	c.3271G>T	c.(3271-3273)GCA>TCA	p.A1091S	DNMT1_uc002mne.2_5'Flank|DNMT1_uc002mnf.2_Missense_Mutation_p.A15S|DNMT1_uc010xlc.1_Missense_Mutation_p.A1107S|DNMT1_uc002mnh.2_Missense_Mutation_p.A986S|DNMT1_uc010xld.1_Missense_Mutation_p.A1091S	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1091	BAH 2.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	TTGCTCTTTGCATTATAGGCC	0.453000													39	82					4.67007e-22	7.90748e-22	0.008740	1	0
ZGLP1	100125288	broad.mit.edu	37	19	10418986	10418986	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:10418986C>T	uc002mnw.3	-	1	1248	c.372G>A	c.(370-372)CAG>CAA	p.Q124Q	FDX1L_uc002mnx.1_RNA	NM_001103167	NP_001096637	P0C6A0	ZGLP1_HUMAN	GATA like protein-1	124					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGGGCCTTCTCTGGGGTGGGG	0.652000													6	19					0	0	0.001168	0	0
KANK2	25959	broad.mit.edu	37	19	11289247	11289247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:11289247C>T	uc010dxv.2	-	7	1957	c.1399G>A	c.(1399-1401)GAG>AAG	p.E467K	KANK2_uc002mqm.2_Missense_Mutation_p.E467K|KANK2_uc002mqo.3_Missense_Mutation_p.E467K|KANK2_uc002mqp.1_Missense_Mutation_p.E276K	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	467											0						CCGGCCTCCTCGGACTCTTGG	0.682000													11	32					0	0	0.002450	0	0
ZNF700	90592	broad.mit.edu	37	19	12059734	12059734	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:12059734A>G	uc002msu.2	+	4	1021	c.895A>G	c.(895-897)AGT>GGT	p.S299G	ZNF700_uc010xme.1_Missense_Mutation_p.S317G|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	299	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACATGAAAGAAGTCACATGGG	0.388000													9	15					0	0	0.004482	0	0
WIZ	58525	broad.mit.edu	37	19	15535023	15535023	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:15535023G>A	uc002nbc.2	-	7	2741	c.2718C>T	c.(2716-2718)TTC>TTT	p.F906F	WIZ_uc002nba.3_Silent_p.F773F|WIZ_uc002nbb.3_Silent_p.F732F	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1589						nucleus	zinc ion binding				0						TGTTGCCCACGAACTTGACAA	0.647000													10	11					0	0	0.006214	0	0
HSH2D	84941	broad.mit.edu	37	19	16268098	16268098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:16268098G>A	uc002ndp.3	+	8	1084	c.553G>A	c.(553-555)GAA>AAA	p.E185K	HSH2D_uc002ndr.2_Missense_Mutation_p.E128K|HSH2D_uc010ead.2_RNA	NM_032855	NP_116244	Q96JZ2	HSH2D_HUMAN	hematopoietic SH2 domain containing	185						cytoplasm|nucleus					0						AACCACCAAGGAAGCCACTTC	0.562000													15	29					0	0	0.004007	0	0
AP1M1	8907	broad.mit.edu	37	19	16337294	16337294	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:16337294C>T	uc002ndu.2	+	6	782	c.609C>T	c.(607-609)TTC>TTT	p.F203F	AP1M1_uc002ndv.2_Silent_p.F215F|AP1M1_uc010xpd.1_Silent_p.F203F	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	203	MHD.				cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						TGCGAGTCTTCCTCTCGGGCA	0.647000													4	5					0	0	0.000602	0	0
GRAMD1A	57655	broad.mit.edu	37	19	35500853	35500853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:35500853C>T	uc010xse.1	+	4	439	c.302C>T	c.(301-303)CCC>CTC	p.P101L	GRAMD1A_uc002nxi.1_Missense_Mutation_p.P188L|GRAMD1A_uc002nxk.2_Missense_Mutation_p.P94L|GRAMD1A_uc002nxl.2_5'UTR|GRAMD1A_uc010xsf.1_Missense_Mutation_p.P106L	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	101	GRAM.					integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			AGCAAACTCCCCGAAGCAGAA	0.612000													30	57					0	0	0.001786	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330868	39330868	+	Silent	SNP	T	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:39330868T>G	uc010xul.1	-	8	1112	c.1101A>C	c.(1099-1101)CCA>CCC	p.P367P	HNRNPL_uc010ege.1_Silent_p.P23P|HNRNPL_uc002ojj.1_Silent_p.P23P|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Silent_p.P23P|HNRNPL_uc002ojl.2_Silent_p.P23P|HNRNPL_uc010xum.1_Silent_p.P234P|HNRNPL_uc002ojp.1_Silent_p.P23P|HNRNPL_uc010xun.1_Missense_Mutation_p.H75P	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	367	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GGGGAGGGGGTGGGGGGTGCC	0.642000													3	9					0	0	0.004482	0	0
CEACAM20	125931	broad.mit.edu	37	19	45026939	45026939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:45026939C>T	uc010ejn.1	-	4	491	c.475G>A	c.(475-477)GGT>AGT	p.G159S	CEACAM20_uc010ejo.1_Missense_Mutation_p.G159S|CEACAM20_uc010ejp.1_Missense_Mutation_p.G159S|CEACAM20_uc010ejq.1_Missense_Mutation_p.G159S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	159	Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GGATCAGGACCATCTGAGAGG	0.413000													92	154					0	0	0.003610	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919318	51919318	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:51919318C>T	uc002pwo.2	-	5	1474	c.858G>A	c.(856-858)CTG>CTA	p.L286L	SIGLEC10_uc002pwp.2_Silent_p.L228L|SIGLEC10_uc002pwq.2_Silent_p.L228L|SIGLEC10_uc002pwr.2_Silent_p.L286L|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Silent_p.L238L|SIGLEC10_uc010eow.2_Silent_p.L98L|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	286	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGACCCAGCTCAGTGTGGCAG	0.657000													6	12					0	0	0.001168	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033983	52033983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:52033983G>A	uc002pwy.2	-	3	820	c.658C>T	c.(658-660)CCT>TCT	p.P220S	SIGLEC6_uc002pwz.2_Missense_Mutation_p.P220S|SIGLEC6_uc002pxa.2_Missense_Mutation_p.P220S|SIGLEC6_uc010ydb.1_Missense_Mutation_p.P173S|SIGLEC6_uc010ydc.1_Missense_Mutation_p.P209S|SIGLEC6_uc010eoz.1_Missense_Mutation_p.P198S|SIGLEC6_uc010epb.1_Missense_Mutation_p.P173S|SIGLEC6_uc010epa.1_Missense_Mutation_p.P209S	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	220	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CCGGCTCCAGGGAACGTCACC	0.667000													35	59					0	0	0.003755	0	0
ZNF761	388561	broad.mit.edu	37	19	53959643	53959643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:53959643C>T	uc010eqp.2	+	7	2340	c.1882C>T	c.(1882-1884)CAT>TAT	p.H628Y	ZNF761_uc010ydy.1_Missense_Mutation_p.H574Y|ZNF761_uc002qbt.1_Missense_Mutation_p.H574Y	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	628	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TCGTAGACTTCATACCGGAGA	0.408000													29	54					0	0	0.007291	0	0
TMC4	147798	broad.mit.edu	37	19	54666489	54666489	+	Silent	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:54666489G>T	uc010erf.2	-	10	1569	c.1437C>A	c.(1435-1437)GTC>GTA	p.V479V	TMC4_uc002qdn.2_Silent_p.V193V|TMC4_uc002qdo.2_Silent_p.V473V	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	479	Cytoplasmic (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCTGGCCCAGGACAGTCTCCC	0.552000													7	50					1.12685e-05	1.84908e-05	0.004482	1	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704310	56704310	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr19:56704310T>A	uc010ygh.1	-	1	112	c.112A>T	c.(112-114)AGG>TGG	p.R38W		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	38					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCAGGGTTCCTGTCGTGATTT	0.562000													3	21					0	0	0.000248	0	0
FSHR	2492	broad.mit.edu	37	2	49189984	49189984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:49189984G>A	uc002rww.2	-	10	2050	c.1976C>T	c.(1975-1977)TCA>TTA	p.S659L	FSHR_uc002rwx.2_Missense_Mutation_p.S597L|FSHR_uc010fbn.2_Missense_Mutation_p.S633L	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	659	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GACAGTGGATGAAGTTTCTGT	0.443000									Gonadal_Dysgenesis_46_XX				7	34					0	0	0.004482	0	0
BCL11A	53335	broad.mit.edu	37	2	60688755	60688755	+	Missense_Mutation	SNP	G	A	A	rs138166869		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:60688755G>A	uc002sae.1	-	4	1520	c.1292C>T	c.(1291-1293)TCG>TTG	p.S431L	BCL11A_uc002sab.2_Missense_Mutation_p.S431L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.S100L|BCL11A_uc010ypj.1_Missense_Mutation_p.S397L|BCL11A_uc002sad.1_Missense_Mutation_p.S279L|BCL11A_uc002saf.1_Missense_Mutation_p.S397L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	431					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding	p.S431L(1)		central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CATGGGGGACGATTTGTGCAT	0.652000			T	IGH@	B-CLL								175	262					0	0	0.003610	0	0
PLGLA	285189	broad.mit.edu	37	2	107007391	107007391	+	RNA	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:107007391G>A	uc002tdp.2	+	3		c.240G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						GACTGGGAATGGAAAGAACTA	0.463000													15	15					0	0	0.001882	0	0
MARCO	8685	broad.mit.edu	37	2	119752007	119752007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:119752007G>A	uc002tln.1	+	17	1606	c.1474G>A	c.(1474-1476)GAG>AAG	p.E492K	MARCO_uc010yyf.1_Missense_Mutation_p.E414K	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	492	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TCGGGGCACGGAGAGTACCCT	0.562000													8	49					0	0	0.003080	0	0
HS6ST1	9394	broad.mit.edu	37	2	129026412	129026412	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:129026412G>C	uc002tpt.3	-	2	594	c.560C>G	c.(559-561)CCC>CGC	p.P187R		NM_004807	NP_004798	O60243	H6ST1_HUMAN	heparan sulfate 6-O-sulfotransferase 1	187	Lumenal (Potential).|3'-phosphate binding (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	integral to plasma membrane	sulfotransferase activity			pancreas(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.117)		GCGGGACACGGGGTCTCGTAG	0.632000													5	48					0	0	0.004482	0	0
HS6ST1	9394	broad.mit.edu	37	2	129026419	129026419	+	Nonsense_Mutation	SNP	G	A	A	rs139541363	by1000genomes	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:129026419G>A	uc002tpt.3	-	2	587	c.553C>T	c.(553-555)CGA>TGA	p.R185*		NM_004807	NP_004798	O60243	H6ST1_HUMAN	heparan sulfate 6-O-sulfotransferase 1	185	Lumenal (Potential).|3'-phosphate binding (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	integral to plasma membrane	sulfotransferase activity	p.R185*(1)		pancreas(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.117)		ACGGGGTCTCGTAGCAGGGTG	0.627000													5	46					0	0	0.003080	0	0
KCNH7	90134	broad.mit.edu	37	2	163374610	163374610	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:163374610G>A	uc002uch.1	-	4	734	c.522C>T	c.(520-522)TCC>TCT	p.S174S	KCNH7_uc002uci.2_Silent_p.S174S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	174	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CTTGTGGTAAGGACTGCTTTC	0.403000													29	47					0	0	0.008361	0	0
MYO3B	140469	broad.mit.edu	37	2	171323156	171323157	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:171323156_171323157GG>AC	uc002ufy.2	+	25	3092_3093	c.2949_2950GG>AC	c.(2947-2952)CTGGAG>CTACAG	p.E984Q	MYO3B_uc002ufv.2_Missense_Mutation_p.E971Q|MYO3B_uc010fqb.1_Missense_Mutation_p.E971Q|MYO3B_uc002ufz.2_Missense_Mutation_p.E984Q|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_Intron	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	984	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CAGGGATTCTGGAGACAGTCAG	0.535000													20	79					0	0	0.004672	0	0
DNAH7	56171	broad.mit.edu	37	2	196786854	196786854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:196786854G>A	uc002utj.3	-	24	3994	c.3893C>T	c.(3892-3894)TCC>TTC	p.S1298F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1298	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGCCTAGGGGAATTACCCAG	0.343000													14	24					0	0	0.004990	0	0
SPEG	10290	broad.mit.edu	37	2	220334052	220334052	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:220334052C>T	uc010fwg.2	+	13	3666	c.3666C>T	c.(3664-3666)TTC>TTT	p.F1222F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1222	Ig-like 6.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TCAGCTGGTTCCACAATGGCC	0.647000													7	14					0	0	0.003080	0	0
IRS1	3667	broad.mit.edu	37	2	227661962	227661962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:227661962G>A	uc002voh.3	-	1	1545	c.1493C>T	c.(1492-1494)ACA>ATA	p.T498I		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	498					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GCCCAAGCCTGTTCCTGGGGT	0.602000											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	55					0	0	0.008871	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884208	228884208	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:228884208C>T	uc002vpq.2	-	7	1409	c.1362G>A	c.(1360-1362)CAG>CAA	p.Q454Q	SPHKAP_uc002vpp.2_Silent_p.Q454Q|SPHKAP_uc010zlx.1_Silent_p.Q454Q	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	454						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CATCTGGACTCTGAACAACGA	0.502000													20	51					0	0	0.007413	0	0
COL6A3	1293	broad.mit.edu	37	2	238270418	238270418	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr2:238270418C>T	uc002vwl.2	-	15	6405	c.6120G>A	c.(6118-6120)AGG>AGA	p.R2040R	COL6A3_uc002vwo.2_Silent_p.R1834R|COL6A3_uc010znj.1_Silent_p.R1433R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2040	Triple-helical region.|Cell attachment site.|Collagen-like 1.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CGCGGTCTCCCCTCTGCCCAG	0.552000													24	54					0	0	0.003330	0	0
SIRPD	128646	broad.mit.edu	37	20	1532376	1532376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:1532376C>T	uc002wfi.2	-	2	426	c.382G>A	c.(382-384)GAG>AAG	p.E128K		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	128	Ig-like V-type.					extracellular region				ovary(1)|kidney(1)|skin(1)	3						GATTGGTACTCCTTGATAGCT	0.473000													37	33					0	0	0.004878	0	0
PLCB4	5332	broad.mit.edu	37	20	9453991	9453991	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:9453991C>T	uc002wnf.2	+	36	3574	c.3438C>T	c.(3436-3438)TTC>TTT	p.F1146F	PLCB4_uc010gbx.2_Silent_p.F1158F|PLCB4_uc002wne.2_Silent_p.F1146F|PLCB4_uc002wnh.2_Silent_p.F993F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1146					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATCTAGAATTCCTAGAGAAAC	0.383000													27	12					0	0	0.001786	0	0
PAK7	57144	broad.mit.edu	37	20	9561212	9561212	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:9561212G>A	uc002wnl.2	-	5	1115	c.570C>T	c.(568-570)TCC>TCT	p.S190S	PAK7_uc002wnk.2_Silent_p.S190S|PAK7_uc002wnj.2_Silent_p.S190S|PAK7_uc010gby.1_Silent_p.S190S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	190	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TGGCAAAATCGGATTTCAAAG	0.468000													52	27					0	0	0.003610	0	0
NXT1	29107	broad.mit.edu	37	20	23334690	23334690	+	Silent	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:23334690G>T	uc002wsx.1	+	2	399	c.12G>T	c.(10-12)GTG>GTT	p.V4V		NM_013248	NP_037380	Q9UKK6	NXT1_HUMAN	NTF2-like export factor 1	4						cytoplasm|nuclear pore				ovary(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					TGGCATCTGTGGATTTCAAGA	0.547000													27	79					5.61819e-17	9.47512e-17	0.005443	1	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333000													3	85					0	0	0.000602	0	0
ZNF335	63925	broad.mit.edu	37	20	44577618	44577618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr20:44577618C>T	uc002xqw.2	-	28	4126	c.4003G>A	c.(4003-4005)GAC>AAC	p.D1335N	ZNF335_uc002xqv.2_Missense_Mutation_p.D447N|ZNF335_uc010zxk.1_Missense_Mutation_p.D1180N	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	1335					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GTGATGACGTCGTACTCGATG	0.617000													13	90					0	0	0.002450	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334036	37334036	+	Missense_Mutation	SNP	C	T	T	rs147430768		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr22:37334036C>T	uc003aqa.3	+	14	2403	c.2186C>T	c.(2185-2187)TCC>TTC	p.S729F	CSF2RB_uc003aqc.3_Missense_Mutation_p.S735F	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	729	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TCGTCTGTCTCCCTAGTTCCC	0.632000													20	96					0	0	0.003330	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121191	38121191	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr22:38121191G>A	uc003atr.2	+	7	2899	c.2628G>A	c.(2626-2628)GAG>GAA	p.E876E	TRIOBP_uc003atu.2_Silent_p.E704E|TRIOBP_uc003atq.1_Silent_p.E876E|TRIOBP_uc003ats.1_Silent_p.E704E	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	876					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCCAAAAGGAGAATCTGAGAC	0.522000													28	124					0	0	0.007291	0	0
SLC25A17	10478	broad.mit.edu	37	22	41173357	41173357	+	Missense_Mutation	SNP	G	A	A	rs139416009		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr22:41173357G>A	uc003azc.2	-	6	612	c.472C>T	c.(472-474)CGC>TGC	p.R158C	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Missense_Mutation_p.R121C|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Missense_Mutation_p.R85C	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	158	Lumenal (Potential).|Solcar 2.				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						CCTTCATCGCGAATGATCTGA	0.398000													20	19					0	0	0.001882	0	0
SMC1B	27127	broad.mit.edu	37	22	45789546	45789546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr22:45789546C>T	uc003bgc.2	-	9	1565	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	SMC1B_uc003bgd.2_Missense_Mutation_p.E505K|SMC1B_uc003bge.1_Missense_Mutation_p.E288K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	505	Flexible hinge.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TTAAGGTGTTCCAGAACCTCT	0.348000													37	42					0	0	0.002222	0	0
TSEN2	80746	broad.mit.edu	37	3	12560665	12560665	+	Silent	SNP	C	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:12560665C>A	uc003bxc.2	+	8	1455	c.1068C>A	c.(1066-1068)CCC>CCA	p.P356P	TSEN2_uc003bwy.2_Silent_p.P356P|TSEN2_uc003bwz.2_Silent_p.P297P|TSEN2_uc003bxa.2_Silent_p.P330P|TSEN2_uc011auq.1_Silent_p.P330P|TSEN2_uc003bxb.2_Silent_p.P356P|TSEN2_uc011aur.1_Silent_p.P265P	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	356					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						GCTGGGTGCCCAAAGTGGGAC	0.443000													7	425					0.00448238	0.00732697	0.004482	1	0
FBLN2	2199	broad.mit.edu	37	3	13612972	13612972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:13612972G>A	uc011avb.1	+	2	1242	c.1117G>A	c.(1117-1119)GTG>ATG	p.V373M	FBLN2_uc011auz.1_Missense_Mutation_p.V399M|FBLN2_uc011ava.1_Missense_Mutation_p.V373M|FBLN2_uc011avc.1_Missense_Mutation_p.V373M	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	373	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AACTCAGGCCGTGCCTGGCTC	0.667000													4	18					0	0	0.000248	0	0
WNT7A	7476	broad.mit.edu	37	3	13916511	13916511	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:13916511G>A	uc003bye.1	-	2	536	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	77					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GGCCATTGCGGAACTGAAACT	0.607000													18	28					0	0	0.001882	0	0
OSBPL10	114884	broad.mit.edu	37	3	31725457	31725457	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:31725457G>A	uc003cev.2	-	9	1776	c.1395C>T	c.(1393-1395)GCC>GCT	p.A465A	OSBPL10_uc003ceu.1_Silent_p.A222A|OSBPL10_uc011axf.1_Silent_p.A401A	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	465					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		CCTCGTGAAAGGCTGTGAGAT	0.552000													24	55					0	0	0.005443	0	0
ARPP21	10777	broad.mit.edu	37	3	35763118	35763118	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:35763118G>A	uc003cgb.2	+	14	1281	c.1017G>A	c.(1015-1017)GGG>GGA	p.G339G	ARPP21_uc003cga.2_Silent_p.G285G|ARPP21_uc011axy.1_Silent_p.G305G|ARPP21_uc003cgf.2_Silent_p.G140G|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	339	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ATGGCTCAGGGAGAACATCTG	0.542000													14	28					0	0	0.004007	0	0
SCN11A	11280	broad.mit.edu	37	3	38889226	38889226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:38889226C>T	uc011ays.1	-	26	4534	c.4335G>A	c.(4333-4335)ATG>ATA	p.M1445I		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1445	IV.|Helical; Name=S3 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGGTAGAAATCATTGTACCTC	0.507000													4	10					0	0	0.000248	0	0
KBTBD5	131377	broad.mit.edu	37	3	42733374	42733374	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:42733374G>A	uc003clv.1	+	6	1855	c.1755G>A	c.(1753-1755)AGG>AGA	p.R585R		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	585	Kelch 5.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TCATCCCCAGGTATAACGAGG	0.592000													33	51					0	0	0.004289	0	0
CCDC13	152206	broad.mit.edu	37	3	42794129	42794129	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:42794129A>T	uc003cly.3	-	4	535	c.451T>A	c.(451-453)TCA>ACA	p.S151T	CCDC13_uc003clz.2_Missense_Mutation_p.S151T|CCDC13_uc011azq.1_Missense_Mutation_p.S151T	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	151	Potential.									ovary(1)	1						GCACCCTCTGATTCTGCCATC	0.547000													25	68					0	0	0.004656	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50404317	50404317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:50404317G>A	uc003daq.2	-	30	2593	c.2555C>T	c.(2554-2556)GCT>GTT	p.A852V	CACNA2D2_uc003dap.2_Missense_Mutation_p.A845V|CACNA2D2_uc003dao.2_5'Flank	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	852	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	GAACTTCTCAGCCCAAGCCTC	0.597000													17	29					0	0	0.008871	0	0
ITIH3	3699	broad.mit.edu	37	3	52835084	52835084	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:52835084C>T	uc003dfv.2	+	11	1341	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	ITIH3_uc011bek.1_Silent_p.F435F	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	435	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ATTATAACTTCCTGGAGAACA	0.453000													30	48					0	0	0.008361	0	0
LMOD3	56203	broad.mit.edu	37	3	69169211	69169211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:69169211C>T	uc003dns.2	-	2	504	c.295G>A	c.(295-297)GAA>AAA	p.E99K	LMOD3_uc003dnt.2_Missense_Mutation_p.E99K	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	99	Glu-rich.					cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		TGAGTCTTTTCCTACAAGAGA	0.313000													11	30					0	0	0.001855	0	0
SENP7	57337	broad.mit.edu	37	3	101059023	101059023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:101059023C>T	uc003dut.2	-	16	2384	c.2273G>A	c.(2272-2274)GGG>GAG	p.G758E	SENP7_uc003duu.2_Missense_Mutation_p.G693E|SENP7_uc003duv.2_Missense_Mutation_p.G725E|SENP7_uc003duw.2_Missense_Mutation_p.G692E|SENP7_uc003dux.2_Missense_Mutation_p.G594E	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	758					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						TCCTAATCCCCCCTTAGTAGG	0.294000													8	18					0	0	0.004482	0	0
PHLDB2	90102	broad.mit.edu	37	3	111604089	111604089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:111604089G>A	uc010hqa.2	+	2	1576	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E416K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E389K|PHLDB2_uc003dye.3_Missense_Mutation_p.E389K|PHLDB2_uc003dyf.3_Missense_Mutation_p.E389K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	389						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGGATCTGTGGAATTTGATGA	0.512000													29	57					0	0	0.005443	0	0
DHX36	170506	broad.mit.edu	37	3	154010354	154010354	+	Silent	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:154010354T>C	uc003ezy.3	-	15	1881	c.1800A>G	c.(1798-1800)AAA>AAG	p.K600K	DHX36_uc010hvq.2_Silent_p.K586K|DHX36_uc003ezz.3_Silent_p.K600K	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	600	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CAGCTCGACCTTTTCTCTGTT	0.363000													3	175					0	0	0.004672	0	0
MECOM	2122	broad.mit.edu	37	3	168833340	168833340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:168833340C>T	uc003ffi.3	-	7	2025	c.1756G>A	c.(1756-1758)GAT>AAT	p.D586N	MECOM_uc010hwk.1_Missense_Mutation_p.D609N|MECOM_uc003ffj.3_Missense_Mutation_p.D651N|MECOM_uc011bpi.1_Missense_Mutation_p.D587N|MECOM_uc003ffn.3_Missense_Mutation_p.D586N|MECOM_uc003ffk.2_Missense_Mutation_p.D586N|MECOM_uc003ffl.2_Missense_Mutation_p.D746N|MECOM_uc011bpj.1_Missense_Mutation_p.D774N|MECOM_uc011bpk.1_Missense_Mutation_p.D576N|MECOM_uc010hwn.2_Missense_Mutation_p.D774N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	586	CTBP-binding motif 2 (By similarity).			DL->AS: Partial loss of interaction with CTBP1. Loss of interaction with CTBP1; when associated with 555-A-S-556.	apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATACTTAGATCCAGGGGCTGG	0.532000													16	42					0	0	0.008871	0	0
TNIK	23043	broad.mit.edu	37	3	170819380	170819380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:170819380C>T	uc003fhh.2	-	22	2794	c.2449G>A	c.(2449-2451)GAA>AAA	p.E817K	TNIK_uc003fhi.2_Missense_Mutation_p.E762K|TNIK_uc003fhj.2_Missense_Mutation_p.E788K|TNIK_uc003fhk.2_Missense_Mutation_p.E809K|TNIK_uc003fhl.2_Missense_Mutation_p.E733K|TNIK_uc003fhm.2_Missense_Mutation_p.E754K|TNIK_uc003fhn.2_Missense_Mutation_p.E780K|TNIK_uc003fho.2_Missense_Mutation_p.E725K|TNIK_uc003fhg.2_5'UTR	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	817	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TTTGTTTCTTCAATCCGGAGT	0.453000													57	79					0	0	0.003610	0	0
YEATS2	55689	broad.mit.edu	37	3	183471995	183471995	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:183471995T>C	uc003fly.2	+	11	1427	c.1232T>C	c.(1231-1233)ATG>ACG	p.M411T		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	411					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCCACCAAAATGACTACATCC	0.438000													36	72					0	0	0.003271	0	0
OSTalpha	200931	broad.mit.edu	37	3	195959976	195959976	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr3:195959976C>A	uc003fwd.2	+	9	1130	c.929C>A	c.(928-930)ACT>AAT	p.T310N	OSTalpha_uc003fwe.2_Missense_Mutation_p.T177N	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	310	Helical; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		TTTCTAATGACTGTGCTGACA	0.448000													46	89					7.88023e-25	1.33964e-24	0.003610	1	0
SLIT2	9353	broad.mit.edu	37	4	20525429	20525429	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:20525429C>T	uc003gpr.1	+	13	1381	c.1177C>T	c.(1177-1179)CAG>TAG	p.Q393*	SLIT2_uc003gps.1_Nonsense_Mutation_p.Q393*	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	393	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AGATGCTTTTCAGGATCTCCA	0.403000													21	66					0	0	0.002299	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361563	70361563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:70361563G>A	uc003hek.3	-	1	64	c.17C>T	c.(16-18)ACT>ATT	p.T6I	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.T6I	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	6					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AAGAGCTGAAGTCCATTTCAT	0.443000													54	71					0	0	0.003610	0	0
TET2	54790	broad.mit.edu	37	4	106157388	106157388	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:106157388C>T	uc003hxk.2	+	3	2675	c.2289C>T	c.(2287-2289)CCC>CCT	p.P763P	TET2_uc011cez.1_Silent_p.P784P|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Silent_p.P763P|TET2_uc003hxi.1_Silent_p.P763P	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	763	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TTCCTCACCCCCAAAGCAACA	0.393000			Mis N|F		MDS								13	24					0	0	0.001368	0	0
COL25A1	84570	broad.mit.edu	37	4	109784498	109784498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:109784498C>T	uc003hze.1	-	20	1660	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	COL25A1_uc003hzg.2_Missense_Mutation_p.E377K|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.E158K	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	377	Extracellular (Potential).|Collagen-like 5.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GCTCCAGGTTCCCCTCGCTCA	0.488000													23	19					0	0	0.005443	0	0
FAT4	79633	broad.mit.edu	37	4	126373736	126373736	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:126373736G>A	uc003ifj.3	+	9	11565	c.11565G>A	c.(11563-11565)GCG>GCA	p.A3855A	FAT4_uc011cgp.1_Silent_p.A2153A|FAT4_uc003ifi.1_Silent_p.A1333A	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3855	Extracellular (Potential).|EGF-like 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGGATATGCGGGTAGCTGGT	0.473000													5	44					0	0	0.001984	0	0
ZNF827	152485	broad.mit.edu	37	4	146823350	146823350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:146823350G>A	uc003ikn.2	-	2	1109	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L	ZNF827_uc003ikm.2_Missense_Mutation_p.P354L|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	354	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TCTTCCCTTAGGAACTGGGAG	0.284000													5	38					0	0	0.000602	0	0
PRSS48	345062	broad.mit.edu	37	4	152203360	152203360	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:152203360G>A	uc011cif.1	+	3	276	c.276G>A	c.(274-276)AGG>AGA	p.R92R	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	92	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GTGACTCAAGGAAACGTGTGA	0.478000													105	108					0	0	0.003610	0	0
GRIA2	2891	broad.mit.edu	37	4	158254053	158254054	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr4:158254053_158254054CC>TT	uc003ipm.3	+	7	1424_1425	c.965_966CC>TT	c.(964-966)TCC>TTT	p.S322F	GRIA2_uc011cit.1_Missense_Mutation_p.S275F|GRIA2_uc003ipl.3_Missense_Mutation_p.S322F|GRIA2_uc003ipk.3_Missense_Mutation_p.S275F|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	322	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ATTGAAATCTCCCGAAGGGGGA	0.485000													39	45					0	0	0.004672	0	0
SLC6A18	348932	broad.mit.edu	37	5	1243736	1243736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:1243736C>T	uc003jby.1	+	9	1321	c.1198C>T	c.(1198-1200)CCT>TCT	p.P400S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	400	Helical; Name=8; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCCGGGGGCTCCTGTGTGGGC	0.662000													30	49					0	0	0.001786	0	0
DNAH5	1767	broad.mit.edu	37	5	13753547	13753547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:13753547G>A	uc003jfd.2	-	63	10709	c.10667C>T	c.(10666-10668)CCA>CTA	p.P3556L	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3556					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTCCAAATGGAATTTTCCG	0.398000									Kartagener_syndrome				41	101					0	0	0.003214	0	0
PRDM9	56979	broad.mit.edu	37	5	23526666	23526666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:23526666G>A	uc003jgo.2	+	11	1651	c.1469G>A	c.(1468-1470)GGA>GAA	p.G490E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	490					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TGTAGAGTGGGAAAAAGAATA	0.438000										HNSCC(3;0.000094)			15	19					0	0	0.002450	0	0
CDH9	1007	broad.mit.edu	37	5	26902839	26902840	+	Splice_Site	DNP	CT	TA	TA			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:26902839_26902840CT>TA	uc003jgs.1	-	7	1169	c.1000_splice	c.e7-1	p.N334_splice		NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein						adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AATCTAAATTCTGGAGTTAAAT	0.322000													6	20					0	0	0.004672	0	0
CDC20B	166979	broad.mit.edu	37	5	54420689	54420689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:54420689G>A	uc003jpo.1	-	9	1332	c.1157C>T	c.(1156-1158)CCA>CTA	p.P386L	CDC20B_uc003jpn.1_Missense_Mutation_p.P386L|CDC20B_uc010ivu.1_Missense_Mutation_p.P386L|CDC20B_uc010ivv.1_3'UTR	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	386	WD 4.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			ACTGGCACCTGGATCGTGGGG	0.542000													28	47					0	0	0.005443	0	0
GPR98	84059	broad.mit.edu	37	5	89953923	89953923	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:89953923T>C	uc003kju.2	+	21	4676	c.4580T>C	c.(4579-4581)ATT>ACT	p.I1527T	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1527	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCATTCATTATTTCTGCAAGA	0.363000													40	89					0	0	0.007835	0	0
TRPC7	57113	broad.mit.edu	37	5	135551958	135551958	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:135551958G>A	uc003lbn.1	-	10	2349	c.2346C>T	c.(2344-2346)ATC>ATT	p.I782I	TRPC7_uc010jef.1_Silent_p.I719I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I713I|TRPC7_uc010jei.1_Silent_p.I658I|TRPC7_uc010jej.1_Silent_p.I334I	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	783	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCCGTTTCATGATTTTCTGAA	0.512000													6	11					0	0	0.001984	0	0
HSPA9	3313	broad.mit.edu	37	5	137906798	137906798	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:137906798G>A	uc003ldf.2	-	4	369	c.261C>T	c.(259-261)ACC>ACT	p.T87T	HSPA9_uc011cyw.1_Silent_p.T18T	NM_004134	NP_004125	P38646	GRP75_HUMAN	heat shock 70kDa protein 9 precursor	87					anti-apoptosis|protein folding	cell surface|mitochondrial nucleoid	ATP binding|unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CAACTGAAGGGGTGGTTCTGG	0.438000													16	25					0	0	0.004007	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718682	140718682	+	Silent	SNP	C	T	T	rs150708423		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:140718682C>T	uc003ljk.1	+	1	329	c.144C>T	c.(142-144)ATC>ATT	p.I48I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.I48I	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	48	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGGCAACATCGCCAAGGACT	0.612000											OREG0016854	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	69					0	0	0.005524	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140752003	140752003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:140752003C>T	uc003ljw.1	+	1	2042	c.2042C>T	c.(2041-2043)CCC>CTC	p.P681L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.P681L|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	681	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCCACTCCCTCTGACCCT	0.567000													26	60					0	0	0.008361	0	0
RNF145	153830	broad.mit.edu	37	5	158601155	158601155	+	Silent	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:158601155T>C	uc003lxp.2	-	6	946	c.633A>G	c.(631-633)GTA>GTG	p.V211V	RNF145_uc011ddy.1_Silent_p.V225V|RNF145_uc003lxo.1_Silent_p.V239V|RNF145_uc011ddz.1_Silent_p.V228V|RNF145_uc010jiq.1_Silent_p.V241V|RNF145_uc011dea.1_Silent_p.V227V	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	211	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAAGGCCATATACCTCCACTA	0.373000													7	11					0	0	0.001984	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171765958	171765958	+	Silent	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr5:171765958A>G	uc003mbr.2	-	13	2322	c.2151T>C	c.(2149-2151)GAT>GAC	p.D717D		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	717					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGCTGAGACCATCCTGTTTGC	0.637000													21	42					0	0	0.001523	0	0
IRF4	3662	broad.mit.edu	37	6	401457	401457	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr6:401457A>C	uc003msz.3	+	7	892	c.779A>C	c.(778-780)GAA>GCA	p.E260A	IRF4_uc010jne.1_Missense_Mutation_p.E260A|IRF4_uc003mta.3_RNA|IRF4_uc003mtb.3_Missense_Mutation_p.E259A|IRF4_uc003mtc.1_Missense_Mutation_p.E90A	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4	260					interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		TACTACCGGGAAATCCTCGTG	0.622000			T	IGH@	MM 								17	47					0	0	0.001523	0	0
KIF13A	63971	broad.mit.edu	37	6	17764704	17764704	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr6:17764704G>A	uc003ncg.3	-	39	5160	c.5055C>T	c.(5053-5055)ATC>ATT	p.I1685I	KIF13A_uc003ncf.2_Silent_p.I1637I|KIF13A_uc003nch.3_Silent_p.I1650I|KIF13A_uc003nci.3_Silent_p.I1637I|KIF13A_uc003nce.1_Silent_p.I236I	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1685					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTTTCTCAGGGATGCTCTGGG	0.502000													20	50					0	0	0.001523	0	0
C6orf72	116254	broad.mit.edu	37	6	149901054	149901054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr6:149901054G>A	uc003qmq.1	+	5	541	c.514G>A	c.(514-516)GAA>AAA	p.E172K	C6orf72_uc010kie.1_Missense_Mutation_p.E52K	NM_138785	NP_620140	Q9NU53	CF072_HUMAN	hypothetical protein LOC116254 precursor	172	Extracellular (Potential).					integral to membrane					0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;9.66e-12)|GBM - Glioblastoma multiforme(68;0.171)		CCTCCCTTTGGAAGAAAGCAT	0.353000													34	25					0	0	0.003755	0	0
MAP3K4	4216	broad.mit.edu	37	6	161518202	161518202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr6:161518202G>A	uc003qtn.2	+	16	3660	c.3518G>A	c.(3517-3519)GGA>GAA	p.G1173E	MAP3K4_uc010kkc.1_Missense_Mutation_p.G1169E|MAP3K4_uc003qto.2_Missense_Mutation_p.G1173E|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.G626E|MAP3K4_uc003qtp.2_Missense_Mutation_p.G159E	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1173					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		ACTCCAGAGGGATTCAGGTAT	0.488000													23	15					0	0	0.002299	0	0
DGKB	1607	broad.mit.edu	37	7	14613891	14613891	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:14613891C>T	uc003ssz.2	-	19	1906	c.1719G>A	c.(1717-1719)GAG>GAA	p.E573E	DGKB_uc011jxt.1_Silent_p.E554E|DGKB_uc003sta.2_Silent_p.E573E|DGKB_uc011jxu.1_Silent_p.E572E	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	573					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GGTCTCCTTTCTCATCTTTGT	0.358000													63	144					0	0	0.003610	0	0
HDAC9	9734	broad.mit.edu	37	7	18706067	18706067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:18706067G>A	uc003suh.2	+	11	1731	c.1690G>A	c.(1690-1692)GAA>AAA	p.E564K	HDAC9_uc003sue.2_Missense_Mutation_p.E564K|HDAC9_uc011jyd.1_Missense_Mutation_p.E564K|HDAC9_uc003sui.2_Missense_Mutation_p.E567K|HDAC9_uc003suj.2_Missense_Mutation_p.E523K|HDAC9_uc011jya.1_Missense_Mutation_p.E561K|HDAC9_uc003sua.1_Missense_Mutation_p.E542K|HDAC9_uc011jyb.1_Missense_Mutation_p.E520K|HDAC9_uc003sud.1_Missense_Mutation_p.E564K|HDAC9_uc011jyc.1_Missense_Mutation_p.E523K|HDAC9_uc003suf.1_Missense_Mutation_p.E595K|HDAC9_uc010kud.1_Missense_Mutation_p.E567K|HDAC9_uc011jye.1_Missense_Mutation_p.E536K|HDAC9_uc011jyf.1_Missense_Mutation_p.E487K|HDAC9_uc010kue.1_Intron	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	564					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCAGGAAATGGAATCTGGGGA	0.453000											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	14					0	0	0.004482	0	0
ABCB5	340273	broad.mit.edu	37	7	20725384	20725384	+	Silent	SNP	A	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:20725384A>C	uc003suw.3	+	7	1146	c.600A>C	c.(598-600)TCA>TCC	p.S200S	ABCB5_uc010kuh.2_Silent_p.S645S	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	200	Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AGACCAACTCACTTCCTCTGC	0.388000													14	15					0	0	0.003163	0	0
RP9	6100	broad.mit.edu	37	7	33140157	33140157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:33140157G>A	uc003tdm.2	-	2	187	c.169C>T	c.(169-171)CCT>TCT	p.P57S		NM_203288	NP_976033	Q8TA86	RP9_HUMAN	retinitis pigmentosa 9	57	PIM1-binding (By similarity).				RNA splicing	nucleus	nucleic acid binding|protein binding|zinc ion binding				0			GBM - Glioblastoma multiforme(11;0.0403)			ATAAGCCCAGGAGGAGGTTTT	0.343000													6	39					0	0	0.001168	0	0
LIMK1	3984	broad.mit.edu	37	7	73534932	73534932	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:73534932G>A	uc003uaa.1	+	14	1752	c.1587G>A	c.(1585-1587)AAG>AAA	p.K529K	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Silent_p.K495K	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	529	Protein kinase.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				ATGATGAGAAGGTGGATGTGT	0.607000													20	58					0	0	0.002299	0	0
SAMD9	54809	broad.mit.edu	37	7	92732795	92732795	+	Silent	SNP	G	A	A	rs147774813		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:92732795G>A	uc003umf.2	-	3	2872	c.2616C>T	c.(2614-2616)ATC>ATT	p.I872I	SAMD9_uc003umg.2_Silent_p.I872I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	872						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GCTGTTCTTTGATTTCTTTCA	0.333000													20	43					0	0	0.007413	0	0
COL1A2	1278	broad.mit.edu	37	7	94050349	94050349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:94050349G>A	uc003ung.1	+	38	2795	c.2324G>A	c.(2323-2325)GGA>GAA	p.G775E	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	775			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGTCCTGCTGGAAGTCGTGGT	0.428000										HNSCC(75;0.22)			28	53					0	0	0.001786	0	0
C7orf51	222950	broad.mit.edu	37	7	100087164	100087164	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:100087164A>T	uc003uvd.1	+	4	1979	c.1820A>T	c.(1819-1821)CAC>CTC	p.H607L	C7orf51_uc003uve.1_Missense_Mutation_p.H389L	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	607										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCTGTGCCCACGTCATCGCC	0.632000													29	58					0	0	0.002096	0	0
ACTL6B	51412	broad.mit.edu	37	7	100252710	100252710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:100252710C>T	uc003uvy.2	-	4	408	c.301G>A	c.(301-303)GAT>AAT	p.D101N	ACTL6B_uc003uvz.2_RNA|uc003uwa.1_5'Flank	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	101					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					TAGGTGTGATCCAGGATGGCT	0.597000													18	37					0	0	0.007413	0	0
CFTR	1080	broad.mit.edu	37	7	117171039	117171039	+	Silent	SNP	G	A	A	rs1800077	by1000genomes	TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:117171039G>A	uc003vjd.2	+	4	492	c.360G>A	c.(358-360)GCG>GCA	p.A120A	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	120	Helical; Name=2; (Potential).|ABC transmembrane type-1 1.		A -> T (in CF).		respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GCTCTATCGCGATTTATCTAG	0.458000									Cystic_Fibrosis				16	30					0	0	0.006122	0	0
CNOT4	4850	broad.mit.edu	37	7	135080575	135080575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:135080575G>A	uc003vsv.1	-	9	1247	c.940C>T	c.(940-942)CCC>TCC	p.P314S	CNOT4_uc003vss.2_Missense_Mutation_p.P311S|CNOT4_uc011kpz.1_Missense_Mutation_p.P311S|CNOT4_uc003vst.2_Missense_Mutation_p.P314S|CNOT4_uc003vsu.1_Missense_Mutation_p.P311S|CNOT4_uc011kpy.1_Missense_Mutation_p.P314S	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	314					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						GAACTGATGGGGATGACTGGA	0.413000													11	23					0	0	0.002450	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				59	13					0	0	0.003610	0	0
TRPV5	56302	broad.mit.edu	37	7	142609705	142609705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr7:142609705C>T	uc003wby.1	-	13	1995	c.1731G>A	c.(1729-1731)ATG>ATA	p.M577I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	577	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TGTCGCCCATCATGGCGATGA	0.542000													83	25					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2876166	2876166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:2876166G>A	uc011kwk.1	-	52	8255	c.7865C>T	c.(7864-7866)TCG>TTG	p.S2622L	CSMD1_uc011kwj.1_Missense_Mutation_p.S1951L|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2622	Extracellular (Potential).|Sushi 17.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTTCCACACGAGATAACTAG	0.353000													29	76					0	0	0.007291	0	0
USP17L2	377630	broad.mit.edu	37	8	11996013	11996013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:11996013C>T	uc003wvc.1	-	1	257	c.257G>A	c.(256-258)GGA>GAA	p.G86E	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	86					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GCAGGTATTTCCCATATTCTG	0.567000													29	245					0	0	0.004878	0	0
PSD3	23362	broad.mit.edu	37	8	18729960	18729960	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:18729960C>T	uc003wza.2	-	3	517	c.414G>A	c.(412-414)CTG>CTA	p.L138L		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	138					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CTGTGGCTTTCAGAGCTGAAA	0.438000													59	102					0	0	0.003610	0	0
KIF13B	23303	broad.mit.edu	37	8	28956730	28956730	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:28956730G>T	uc003xhh.3	-	36	4303	c.4244C>A	c.(4243-4245)TCC>TAC	p.S1415Y	KIF13B_uc011laz.1_5'UTR	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1415					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		TGTGGTTTGGGATACATCCTG	0.408000													74	124					1.45978e-39	2.49159e-39	0.003610	1	0
ADAM18	8749	broad.mit.edu	37	8	39535031	39535031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:39535031C>T	uc003xni.2	+	15	1607	c.1607C>T	c.(1606-1608)TCA>TTA	p.S536L	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S512L	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	536	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTTAAAAATTCACAACCATTA	0.318000													12	23					0	0	0.000978	0	0
POTEA	340441	broad.mit.edu	37	8	43147853	43147853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:43147853G>A	uc003xpz.1	+	1	269	c.226G>A	c.(226-228)GGT>AGT	p.G76S	POTEA_uc003xqa.1_Missense_Mutation_p.G76S	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	76										ovary(1)	1						TGCCTGGTGGGGTGAAGTCCC	0.602000													23	45					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	8	73157129	73157129	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:73157129C>T	uc010lzg.2	-	4	545	c.9G>A	c.(7-9)GCG>GCA	p.A3A						Homo sapiens cDNA, FLJ99767.																		CGTGGAGGGGCGCAATCATGT	0.527000													51	96					0	0	0.003610	0	0
FAM83H	286077	broad.mit.edu	37	8	144812692	144812692	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr8:144812692G>C	uc003yzk.2	-	2	130	c.61C>G	c.(61-63)CCG>GCG	p.P21A	FAM83H_uc010mfk.1_5'Flank	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	21					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TAGTGAGGCGGCAGGTACCCG	0.677000													12	19					0	0	0.001855	0	0
DMRT1	1761	broad.mit.edu	37	9	894120	894120	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:894120G>A	uc003zgv.2	+	3	896	c.747G>A	c.(745-747)GGG>GGA	p.G249G	DMRT1_uc003zgu.1_Silent_p.G249G	NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	249					cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		ATCCCCTCGGGGGATCCCCTG	0.532000											OREG0019071	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	21					0	0	0.003610	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971208	21971208	+	Splice_Site	SNP	C	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:21971208C>A	uc003zpk.2	-	2	363	c.151_splice	c.e2-1	p.V51_splice	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Splice_Site|CDKN2A_uc010miu.2_Splice_Site|CDKN2A_uc003zpl.2_Splice_Site_p.G106_splice	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1						cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(28)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TCATCATGACCTGCCAGAGAG	0.667000		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			25	22					1.12875e-08	1.87391e-08	0.006320	1	0
CDK20	23552	broad.mit.edu	37	9	90586095	90586095	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:90586095G>A	uc004apr.2	-	3	651	c.345C>T	c.(343-345)GTC>GTT	p.V115V	CDK20_uc004aps.2_Silent_p.V115V|CDK20_uc004apt.2_Silent_p.V128V|CDK20_uc004apu.2_Silent_p.V115V	NM_001039803	NP_001034892	Q8IZL9	CDK20_HUMAN	cell cycle related kinase isoform 3	115	Protein kinase.				cell division|multicellular organismal development	cilium|mitochondrion|nucleus	ATP binding|cyclin-dependent protein kinase activity			skin(1)	1						GGCAGAAGGCGACACCCTTGA	0.612000													30	11					0	0	0.002445	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375806	93375806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:93375806C>T	uc004aqx.1	-	2	415	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	102					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CAGATTTGTTCGTAGATGGGC	0.592000													64	20					0	0	0.003610	0	0
ROR2	4920	broad.mit.edu	37	9	94486685	94486685	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:94486685G>A	uc004arj.1	-	9	2290	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	ROR2_uc004ari.1_Silent_p.S557S	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	697	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CATCCTGGTTGGAGTACCCGC	0.597000													35	8					0	0	0.003271	0	0
WNK2	65268	broad.mit.edu	37	9	96030347	96030347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr9:96030347G>A	uc004ati.1	+	17	3913	c.3913G>A	c.(3913-3915)GTC>ATC	p.V1305I	WNK2_uc011lud.1_Missense_Mutation_p.V1305I|WNK2_uc004atj.2_Missense_Mutation_p.V1305I|WNK2_uc004atk.2_Missense_Mutation_p.V942I	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1305					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						TCAGCAGAACGGTGAGTCTGC	0.562000													3	4					0	0	0.004672	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999214	27999214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:27999214C>T	uc004dbx.1	-	1	353	c.238G>A	c.(238-240)GAA>AAA	p.E80K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	80	Glu-rich.									ovary(3)|skin(1)	4						CTTTCAAGTTCGACGTCTTCA	0.378000													31	79					0	0	0.002445	0	0
DMD	1756	broad.mit.edu	37	X	31462694	31462694	+	Silent	SNP	A	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:31462694A>G	uc004dda.1	-	60	9232	c.8988T>C	c.(8986-8988)AAT>AAC	p.N2996N	DMD_uc004dcq.1_Silent_p.N267N|DMD_uc004dcr.1_Silent_p.N536N|DMD_uc004dcs.1_Silent_p.N536N|DMD_uc004dct.1_Silent_p.N536N|DMD_uc004dcu.1_Silent_p.N536N|DMD_uc004dcv.1_Silent_p.N536N|DMD_uc004dcw.2_Silent_p.N1652N|DMD_uc004dcx.2_Silent_p.N1655N|DMD_uc004dcz.2_Silent_p.N2873N|DMD_uc004dcy.1_Silent_p.N2992N|DMD_uc004ddb.1_Silent_p.N2988N	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2996	Spectrin 22.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GAGCAAGGTCATTGACGTGGC	0.463000													19	53					0	0	0.008871	0	0
BCOR	54880	broad.mit.edu	37	X	39923689	39923689	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:39923689C>T	uc004den.3	-	7	3694	c.3402G>A	c.(3400-3402)AGG>AGA	p.R1134R	BCOR_uc004dep.3_Silent_p.R1134R|BCOR_uc004deo.3_Silent_p.R1116R|BCOR_uc010nhb.2_5'Flank|BCOR_uc004dem.3_Silent_p.R1134R	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1134					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CTTTGCGTTTCCTGTCCACCC	0.612000													10	37					0	0	0.008291	0	0
DDX3X	1654	broad.mit.edu	37	X	41204554	41204554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:41204554G>A	uc004dfe.2	+	11	2002	c.1147G>A	c.(1147-1149)GCT>ACT	p.A383T	DDX3X_uc004dff.2_Missense_Mutation_p.A383T|DDX3X_uc011mkq.1_Missense_Mutation_p.A367T|DDX3X_uc011mkr.1_Missense_Mutation_p.A383T|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	383	Necessary for interaction with XPO1.|Helicase ATP-binding.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						GATGTTTAGTGCTACTTTTCC	0.343000										HNSCC(61;0.18)			16	80					0	0	0.008871	0	0
CCNB3	85417	broad.mit.edu	37	X	50054188	50054188	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:50054188T>G	uc004dox.3	+	6	3317	c.3019T>G	c.(3019-3021)TTC>GTC	p.F1007V	CCNB3_uc004doy.2_Missense_Mutation_p.F1007V|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1007					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					CAATGAGGCATTCCTCTTCGA	0.493000													3	76					0	0	0.004672	0	0
SHROOM4	57477	broad.mit.edu	37	X	50341289	50341289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:50341289C>T	uc004dpe.2	-	8	4215	c.4189G>A	c.(4189-4191)GAT>AAT	p.D1397N	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1397	Potential.|ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GCCTCTGAATCGATGCTGTTC	0.522000													11	38					0	0	0.001855	0	0
ZXDA	7789	broad.mit.edu	37	X	57936240	57936240	+	Silent	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:57936240G>A	uc004dve.2	-	1	828	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	205					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CTTGGGGGGCGATCAGACACC	0.716000													5	22					0	0	0.000602	0	0
ATP7A	538	broad.mit.edu	37	X	77245339	77245339	+	Silent	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:77245339C>T	uc004ecx.3	+	4	1381	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S	ATP7A_uc004ecw.2_Silent_p.S407S	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	407	HMA 4.|Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						GTGTAAAATCCATACGAGTCT	0.418000													56	71					0	0	0.003610	0	0
POF1B	79983	broad.mit.edu	37	X	84634308	84634308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:84634308C>T	uc004eer.2	-	2	298	c.152G>A	c.(151-153)CGA>CAA	p.R51Q	POF1B_uc004ees.2_Missense_Mutation_p.R51Q	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	51							actin binding				0						GGTCCTCACTCGCTCATACAC	0.567000													17	23					0	0	0.006122	0	0
THOC2	57187	broad.mit.edu	37	X	122754817	122754817	+	Splice_Site	SNP	C	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:122754817C>T	uc004etu.2	-	32	4249	c.4217_splice	c.e32-1	p.E1406_splice	THOC2_uc010nqt.1_Splice_Site|THOC2_uc004etw.1_Splice_Site_p.E227_splice	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2						intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						CGTTTTTGTTCTGTTAAGACA	0.388000													53	130					0	0	0.003610	0	0
GPR112	139378	broad.mit.edu	37	X	135428482	135428482	+	Missense_Mutation	SNP	G	A	A	rs143735478		TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:135428482G>A	uc004ezu.1	+	6	2908	c.2617G>A	c.(2617-2619)GAA>AAA	p.E873K	GPR112_uc010nsb.1_Missense_Mutation_p.E668K|GPR112_uc010nsc.1_Missense_Mutation_p.E640K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	873	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGTGACAGACGAATCAGCACA	0.403000													63	81					0	0	0.003610	0	0
GABRE	2564	broad.mit.edu	37	X	151128445	151128445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:151128445G>A	uc004ffi.2	-	6	704	c.650C>T	c.(649-651)TCC>TTC	p.S217F	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	217	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGGATAGGAAACTGGAAA	0.443000													23	39					0	0	0.002780	0	0
RENBP	5973	broad.mit.edu	37	X	153206981	153206981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:153206981G>A	uc004fjo.1	-	8	1065	c.895C>T	c.(895-897)CAC>TAC	p.H299Y	RENBP_uc011mzh.1_3'UTR	NM_002910	NP_002901	P51606	RENBP_HUMAN	renin binding protein	299					mannose metabolic process|regulation of blood pressure		endopeptidase inhibitor activity|mannose-6-phosphate isomerase activity|N-acylglucosamine 2-epimerase activity			ovary(1)|pancreas(1)	2	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				N-Acetyl-D-glucosamine(DB00141)	AGGCCTCCGTGGTCAGGGTCC	0.572000													37	103					0	0	0.005524	0	0
FLNA	2316	broad.mit.edu	37	X	153580735	153580735	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:153580735T>C	uc004fkk.2	-	41	6832	c.6583A>G	c.(6583-6585)AAC>GAC	p.N2195D	FLNA_uc004fki.2_Missense_Mutation_p.N238D|FLNA_uc011mzn.1_Missense_Mutation_p.N328D|FLNA_uc010nuu.1_Missense_Mutation_p.N2187D	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2195	Filamin 20.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAGGTGTGGTTCTCCCCTTCC	0.592000													24	65					0	0	0.003954	0	0
RBM14	10432	broad.mit.edu	37	11	66393035	66393036	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr11:66393035_66393036insT	uc001oit.2	+	2	1827_1828	c.1688_1689insT	c.(1687-1689)CAGfs	p.Q563fs	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	563	Ala-rich.				DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TCCATGTCCCAGGGGGCCGTTG	0.678													13	32	---	---	---	---					
TP53I13	90313	broad.mit.edu	37	17	27899688	27899688	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chr17:27899688delA	uc002hee.2	+	6	1080	c.1042delA	c.(1042-1044)ACAfs	p.T348fs		NM_138349	NP_612358	Q8NBR0	P5I13_HUMAN	tumor protein p53 inducible protein 13	348	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane					0				READ - Rectum adenocarcinoma(3;0.236)		CTGGGGGCCCACAGCGGACAG	0.692													2	4	---	---	---	---					
NAP1L3	4675	broad.mit.edu	37	X	92927823	92927823	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A20B-06A-11D-A196-08	TCGA-EE-A20B-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e897c333-8533-44a3-9bd2-16c54320d5e5	033be73d-7639-4eb3-98d7-88eadb8633b8	g.chrX:92927823delC	uc004efq.2	-	1	786	c.481delG	c.(481-483)GAAfs	p.E161fs	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	161	Glu-rich.				nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						CATTCACATTCTTCTTCTGTA	0.433													11	56	---	---	---	---					
