Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBE2J2	118424	broad.mit.edu	37	1	1203309	1203309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:1203309G>A	uc001adn.2	-	2	374	c.64C>T	c.(64-66)CTT>TTT	p.L22F	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Missense_Mutation_p.L22F|UBE2J2_uc001adp.2_Missense_Mutation_p.L22F|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	22	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		TTAATGCGAAGGTAGTCCTGC	0.567													226	25					0	0	1	0	0
ACAP3	116983	broad.mit.edu	37	1	1233952	1233952	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:1233952C>T	uc001aeb.2	-	11	932	c.858G>A	c.(856-858)TGG>TGA	p.W286*	ACAP3_uc001ady.2_Nonsense_Mutation_p.W16*|ACAP3_uc001aea.2_Nonsense_Mutation_p.W244*	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	286	PH.				filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						CTCACCGGTTCCATGTCTTGA	0.652													13	21					0	0	1	0	0
PUSL1	126789	broad.mit.edu	37	1	1244951	1244951	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:1244951T>G	uc001aed.2	+	4	471	c.441T>G	c.(439-441)TTT>TTG	p.F147L	ACAP3_uc001aeb.2_5'Flank|ACAP3_uc001aec.1_5'UTR|PUSL1_uc010nyi.1_5'UTR|PUSL1_uc009vjx.2_5'UTR	NM_153339	NP_699170	Q8N0Z8	PUSL1_HUMAN	pseudouridylate synthase-like 1	147					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.95e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGCCGGTGTTTGAACGCAACC	0.687													8	20					0	0	1	0	0
TAS1R3	83756	broad.mit.edu	37	1	1267594	1267594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:1267594C>T	uc010nyk.1	+	3	683	c.683C>T	c.(682-684)GCC>GTC	p.A228V		NM_152228	NP_689414	Q7RTX0	TS1R3_HUMAN	taste receptor, type 1, member 3 precursor	228	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste|sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.88e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.146)	Aspartame(DB00168)	ATCTTCTCGGCCCTGGCCGCG	0.731													4	8					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1900196	1900196	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:1900196T>G	uc001aim.1	-	11	1279	c.1123A>C	c.(1123-1125)AAG>CAG	p.K375Q	KIAA1751_uc009vkz.1_Missense_Mutation_p.K375Q	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	375	Potential.									pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TTCTTCCTCTTTTCCTCCTCA	0.537													26	50					0	0	1	0	0
C1orf93	127281	broad.mit.edu	37	1	2520012	2520012	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:2520012G>A	uc001aju.1	+	5	484	c.408G>A	c.(406-408)GGG>GGA	p.G136G	C1orf93_uc001ajw.1_Silent_p.G136G|C1orf93_uc001ajv.1_Silent_p.G154G|C1orf93_uc010nzd.1_Missense_Mutation_p.G143E|C1orf93_uc010nze.1_Intron|C1orf93_uc010nzf.1_Intron|C1orf93_uc001ajx.1_Missense_Mutation_p.E20K	NM_152371	NP_689584	Q8TBF2	PGFS_HUMAN	hypothetical protein LOC127281	136					prostaglandin biosynthetic process	cytosol	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor			central_nervous_system(1)	1	all_cancers(77;0.000167)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.97e-16)|all_lung(118;3.05e-07)|Lung NSC(185;2.8e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Lung SC(97;0.109)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		Epithelial(90;4.76e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.19e-23)|GBM - Glioblastoma multiforme(42;1.13e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.00205)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		GCATCCAGGGGAACTTGTCTG	0.642													129	19					0	0	1	0	0
MMEL1	79258	broad.mit.edu	37	1	2530201	2530201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:2530201G>A	uc001ajy.2	-	12	1284	c.1070C>T	c.(1069-1071)ACT>ATT	p.T357I	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	357	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		GGATAGCACAGTTTGTATGAA	0.398													31	18					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6194297	6194297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:6194297C>T	uc001amb.1	-	20	3135	c.3035G>A	c.(3034-3036)GGC>GAC	p.G1012D	CHD5_uc001alz.1_5'Flank|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1012					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ATCGTAGGAGCCATTGGGCAA	0.597													32	70					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8421934	8421934	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:8421934C>T	uc001ape.2	-	18	2715	c.1905G>A	c.(1903-1905)AAG>AAA	p.K635K	RERE_uc001apf.2_Silent_p.K635K|RERE_uc010nzx.1_Silent_p.K367K|RERE_uc001apd.2_Silent_p.K81K	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	635					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CCTCCTTCACCTTCTGCAGGG	0.552													10	28					0	0	1	0	0
SPSB1	80176	broad.mit.edu	37	1	9416028	9416028	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:9416028C>T	uc010oae.1	+	2	417	c.78C>T	c.(76-78)CTC>CTT	p.L26L	SPSB1_uc001apv.2_Silent_p.L26L	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	26					intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		AGCAGGAGCTCCAGGGTCTGG	0.577													31	52					0	0	1	0	0
KIF1B	23095	broad.mit.edu	37	1	10386378	10386378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:10386378C>T	uc001aqx.3	+	27	3087	c.2885C>T	c.(2884-2886)CCG>CTG	p.P962L	KIF1B_uc001aqw.3_Missense_Mutation_p.P916L|KIF1B_uc001aqy.2_Missense_Mutation_p.P936L|KIF1B_uc001aqz.2_Missense_Mutation_p.P962L|KIF1B_uc001ara.2_Missense_Mutation_p.P922L|KIF1B_uc001arb.2_Missense_Mutation_p.P948L	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	962					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GGGCATGACCCGTTTTACGAC	0.532													79	8					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11007805	11007805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:11007805G>A	uc010oao.1	-	8	1945	c.1940C>T	c.(1939-1941)CCC>CTC	p.P647L	C1orf127_uc001arr.1_Missense_Mutation_p.P629L|C1orf127_uc001ars.1_Missense_Mutation_p.P621L	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	647										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GGCCAAGGTGGGCTCTGTCAG	0.627													20	1					0	0	1	0	0
TNFRSF8	943	broad.mit.edu	37	1	12144533	12144533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:12144533G>A	uc001atq.2	+	2	298	c.76G>A	c.(76-78)GAG>AAG	p.E26K	TNFRSF8_uc010obc.1_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	26	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		TCGACCCTTCGAGGACACCTG	0.612													56	8					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887330	12887330	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:12887330C>T	uc001auk.2	-	3	723	c.527G>A	c.(526-528)TGG>TAG	p.W176*		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	176											0						GGGCAGTATCCACTTGCAATT	0.478													106	225					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13910401	13910401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:13910401C>T	uc001avd.2	+	1	150	c.101C>T	c.(100-102)CCC>CTC	p.P34L	PDPN_uc001avc.2_Missense_Mutation_p.P34L|PDPN_uc009vob.2_5'Flank|PDPN_uc009voc.2_5'Flank|PDPN_uc001ave.2_5'Flank|PDPN_uc001avf.2_5'Flank	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	Error:Variant_position_missing_in_Q86YL7_after_alignment					cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		GCTCCTGCTCCCACCCCTCCG	0.652													11	30					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14108622	14108622	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:14108622C>T	uc001avi.2	+	8	5188	c.4332C>T	c.(4330-4332)GCC>GCT	p.A1444A	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Silent_p.A1444A|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Silent_p.A1243A|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	1444	Arg/Lys-rich (basic).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		AGCAGAAGGCCGACTTGAAAA	0.393													66	132					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16257107	16257107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:16257107C>T	uc001axk.1	+	11	4576	c.4372C>T	c.(4372-4374)CGT>TGT	p.R1458C	SPEN_uc010obp.1_Missense_Mutation_p.R1417C	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1458					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTCTTCATCTCGTGAAGAAAA	0.368													31	4					0	0	1	0	0
CLCNKA	1187	broad.mit.edu	37	1	16360142	16360142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:16360142G>A	uc001axu.2	+	20	2133	c.2053G>A	c.(2053-2055)GCT>ACT	p.A685T	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.A684T|CLCNKA_uc010obw.1_Missense_Mutation_p.A642T|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	685					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	AAATCCGCCAGCTCCAAAGTG	0.577													22	5					0	0	1	0	0
FAM131C	348487	broad.mit.edu	37	1	16388684	16388684	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:16388684A>C	uc001axz.3	-	4	368	c.178T>G	c.(178-180)TGC>GGC	p.C60G	FAM131C_uc010obz.1_Missense_Mutation_p.C60G	NM_182623	NP_872429	Q96AQ9	F131C_HUMAN	hypothetical protein LOC348487	60											0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.32e-08)|COAD - Colon adenocarcinoma(227;5.56e-06)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		GTCTGGAAGCACCTCTGGAGG	0.662													20	8					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16891403	16891403	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:16891403C>T	uc009vos.1	-	29	4188	c.3300G>A	c.(3298-3300)AAG>AAA	p.K1100K	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1100	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ccttccccttcttTTCAATTT	0.259													14	476					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17575650	17575650	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:17575650C>T	uc001bai.2	+	1	58	c.18C>T	c.(16-18)ATC>ATT	p.I6I		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	6					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGCAGAGAATCGTGCGTGTGT	0.597													9	49					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17682946	17682946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:17682946G>A	uc001baj.2	+	13	1578	c.1550G>A	c.(1549-1551)GGG>GAG	p.G517E		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	517					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CTGTTCGAAGGGATCAAGAGT	0.557													8	6					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17685796	17685796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:17685796G>A	uc001baj.2	+	15	1679	c.1651G>A	c.(1651-1653)GAG>AAG	p.E551K		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	551					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CTGGAACCGCGAGCTGCTGAA	0.343													21	37					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809378	18809378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:18809378G>A	uc001bax.2	+	1	1955	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E417K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	635	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCGTGCCAAGGAAATCTTCGT	0.711													15	10					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21009370	21009370	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:21009370G>A	uc001bdr.3	-	11	2357	c.2239C>T	c.(2239-2241)CTG>TTG	p.L747L	KIF17_uc001bdp.3_Silent_p.L25L|KIF17_uc001bdq.3_Silent_p.L25L|KIF17_uc009vpx.2_Silent_p.L117L|KIF17_uc001bds.3_Silent_p.L747L	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	747	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TGCTCCAACAGCTGCAGACTG	0.612													14	34					0	0	1	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21934823	21934823	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:21934823G>A	uc001bex.2	-	17	1437	c.1179C>T	c.(1177-1179)CTC>CTT	p.L393L	RAP1GAP_uc001bev.2_Silent_p.L393L|RAP1GAP_uc001bew.2_Silent_p.L457L|RAP1GAP_uc001bey.2_Silent_p.L393L	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	393	Rap-GAP.				regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GCGTCTCCAGGAGGGCGGCCC	0.657													15	36					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22169793	22169793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:22169793G>A	uc001bfj.2	-	66	8795	c.8755C>T	c.(8755-8757)CCT>TCT	p.P2919S	HSPG2_uc009vqd.2_Missense_Mutation_p.P2920S	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2919	Ig-like C2-type 14.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CACTCACCAGGAATGGGTCCT	0.622													31	22					0	0	1	0	0
EPHA8	2046	broad.mit.edu	37	1	22920043	22920043	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:22920043C>T	uc001bfx.1	+	7	1592	c.1467C>T	c.(1465-1467)ACC>ACT	p.T489T		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	489	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCTACTCCACCCTCAAGGCCG	0.697													3	11					0	0	1	0	0
C1QA	712	broad.mit.edu	37	1	22965364	22965364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:22965364G>A	uc001bfy.2	+	3	287	c.202G>A	c.(202-204)GGA>AGA	p.G68R	C1QA_uc001bfz.2_Missense_Mutation_p.G68R	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	68	Collagen-like.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGGCCTTAAAGGAGACCAGGG	0.637													5	6					0	0	1	0	0
C1QB	713	broad.mit.edu	37	1	22987483	22987483	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:22987483C>T	uc001bgd.2	+	3	498	c.366C>T	c.(364-366)ATC>ATT	p.I122I		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	122	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCCAGAAAATCGCCTTCTCTG	0.617													64	9					0	0	1	0	0
TMEM57	55219	broad.mit.edu	37	1	25817909	25817909	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:25817909G>A	uc001bkk.2	+	10	1828	c.1626G>A	c.(1624-1626)CGG>CGA	p.R542R	TMEM57_uc009vru.2_Silent_p.R315R|TMEM57_uc009vrv.2_Silent_p.R184R	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	542						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AGGAGCTTCGGAAATATAAGG	0.398													11	28					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26527421	26527421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:26527421G>A	uc010oez.1	+	8	1088	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E	CATSPER4_uc010oey.1_Missense_Mutation_p.G185E|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	363	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCTTGCGGGAGGCCCCCTG	0.562													54	8					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26694168	26694168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:26694168C>T	uc001bmg.1	-	3	353	c.235G>A	c.(235-237)GAC>AAC	p.D79N	ZNF683_uc001bmh.1_Missense_Mutation_p.D79N|ZNF683_uc009vsj.1_Missense_Mutation_p.D79N	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	79					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		AGGTCCAGGTCCTGTAGGCAG	0.652													6	9					0	0	1	0	0
LIN28A	79727	broad.mit.edu	37	1	26752948	26752948	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:26752948G>A	uc001bmj.2	+	4	743	c.629G>A	c.(628-630)TGA>TAA	p.*210*	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	210					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						GCACAGAATTGAGCCACAATG	0.542													5	28					0	0	1	0	0
FAM46B	115572	broad.mit.edu	37	1	27333251	27333251	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:27333251G>A	uc010ofj.1	-	2	634	c.462C>T	c.(460-462)TTC>TTT	p.F154F		NM_052943	NP_443175	Q96A09	FA46B_HUMAN	hypothetical protein LOC115572	154										central_nervous_system(1)	1		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;7.71e-51)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|STAD - Stomach adenocarcinoma(196;0.00114)|READ - Rectum adenocarcinoma(331;0.0419)		CGGCCGGCAGGAAGTCTAGTA	0.612													80	6					0	0	1	0	0
TMEM222	84065	broad.mit.edu	37	1	27660755	27660755	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:27660755C>T	uc001bnr.3	+	5	575	c.522C>T	c.(520-522)CTC>CTT	p.L174L	TMEM222_uc001bns.3_RNA|TMEM222_uc001bnt.3_RNA|TMEM222_uc001bnu.3_RNA	NM_032125	NP_115501	Q9H0R3	TM222_HUMAN	transmembrane protein 222	174	Helical; (Potential).					integral to membrane	protein binding				0						TCTGCCTGCTCTACGGGAAGT	0.572													38	5					0	0	1	0	0
AHDC1	27245	broad.mit.edu	37	1	27877948	27877948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:27877948G>A	uc009vsy.2	-	6	1648	c.679C>T	c.(679-681)CCA>TCA	p.P227S	AHDC1_uc009vsz.1_Missense_Mutation_p.P227S|AHDC1_uc001boh.1_Missense_Mutation_p.P100S	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	227	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TCAGGCTCTGGGGGCAGACCC	0.642													16	32					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29023460	29023460	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:29023460G>A	uc001bra.2	+	6	630	c.492G>A	c.(490-492)CAG>CAA	p.Q164Q	GMEB1_uc001bqz.2_Silent_p.Q154Q|GMEB1_uc001brb.2_Silent_p.Q154Q	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	164	SAND.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		ACTCCGGACAGATTGATTTTT	0.458													10	45					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29609321	29609321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:29609321G>A	uc001bru.2	+	12	2112	c.2002G>A	c.(2002-2004)GAA>AAA	p.E668K	PTPRU_uc001brv.2_Missense_Mutation_p.E668K|PTPRU_uc001brw.2_Missense_Mutation_p.E668K|PTPRU_uc009vtq.2_Missense_Mutation_p.E668K|PTPRU_uc009vtr.2_Missense_Mutation_p.E668K	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	668	Extracellular (Potential).|Fibronectin type-III 4.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CTTCGGGGCCGAACTGGCGGC	0.657													44	7					0	0	1	0	0
PEF1	553115	broad.mit.edu	37	1	32098175	32098175	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32098175G>A	uc001bth.1	-	4	558	c.546C>T	c.(544-546)TTC>TTT	p.F182F	PEF1_uc001bte.1_Silent_p.F21F|PEF1_uc001btf.1_Silent_p.F21F|PEF1_uc001btg.1_Silent_p.F112F	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	182	EF-hand 3.|EF-hand 2.				response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		ACTGCTGGATGAATTTCCACA	0.572													10	14					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32203334	32203334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32203334G>A	uc001btn.2	-	19	3149	c.2795C>T	c.(2794-2796)CCC>CTC	p.P932L	BAI2_uc001btm.2_5'Flank|BAI2_uc001btp.1_5'Flank|BAI2_uc010ogn.1_5'Flank|BAI2_uc010ogo.1_Missense_Mutation_p.P574L|BAI2_uc010ogp.1_Missense_Mutation_p.P865L|BAI2_uc010ogq.1_Missense_Mutation_p.P932L|BAI2_uc001bto.2_Missense_Mutation_p.P932L	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	932	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGGGACCGAGGGGGAGCCCGC	0.652													15	5					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32207776	32207776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32207776G>A	uc001btn.2	-	8	1649	c.1295C>T	c.(1294-1296)TCC>TTC	p.S432F	BAI2_uc010ogo.1_Missense_Mutation_p.S74F|BAI2_uc010ogp.1_Missense_Mutation_p.S365F|BAI2_uc010ogq.1_Missense_Mutation_p.S432F|BAI2_uc001bto.2_Missense_Mutation_p.S432F|BAI2_uc001btq.1_Missense_Mutation_p.S365F|BAI2_uc010ogr.1_Missense_Mutation_p.S365F	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	432	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		ACAGGACGTGGAGCATGGGCC	0.662													23	25					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32263882	32263882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32263882C>T	uc001bts.1	-	9	2129	c.2071G>A	c.(2071-2073)GAC>AAC	p.D691N	SPOCD1_uc001btt.2_5'UTR|SPOCD1_uc001btu.2_Missense_Mutation_p.D691N|SPOCD1_uc001btv.2_Missense_Mutation_p.D184N|SPOCD1_uc001btw.1_Missense_Mutation_p.D35N	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	691	TFIIS central.				transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CGCACCAGGTCGTAGGGGGTG	0.622													49	3					0	0	1	0	0
DCDC2B	149069	broad.mit.edu	37	1	32676890	32676890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32676890G>A	uc001bun.2	+	2	284	c.284G>A	c.(283-285)GGG>GAG	p.G95E		NM_001099434	NP_001092904	A2VCK2	DCD2B_HUMAN	doublecortin domain containing 2B	95					intracellular signal transduction						0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CCCCATAGAGGGAAGGACCCA	0.567													10	4					0	0	1	0	0
TSSK3	81629	broad.mit.edu	37	1	32828411	32828411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:32828411G>A	uc001bvf.2	+	1	550	c.109G>A	c.(109-111)GCA>ACA	p.A37T	uc001bve.1_RNA	NM_052841	NP_443073	Q96PN8	TSSK3_HUMAN	testis-specific serine kinase 3	37	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.17)|Breast(348;0.212)				AAGAAAAGTGGCAATTAAAGT	0.522													45	68					0	0	1	0	0
RBBP4	5928	broad.mit.edu	37	1	33135134	33135134	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:33135134C>T	uc001bvr.2	+	8	1095	c.936C>T	c.(934-936)TCC>TCT	p.S312S	RBBP4_uc001bvs.2_Silent_p.S311S|RBBP4_uc010ohj.1_Silent_p.S60S|RBBP4_uc010ohk.1_Silent_p.S277S	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	312					cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				AGTTGCATTCCTTTGAGTCAC	0.259													24	2					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33235333	33235333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:33235333C>T	uc001bvv.2	+	5	605	c.469C>T	c.(469-471)CGG>TGG	p.R157W	KIAA1522_uc001bvu.1_Missense_Mutation_p.R216W|KIAA1522_uc010ohm.1_Missense_Mutation_p.R168W|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	157	Poly-Arg.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GCGGCGTCGGCGGGAGCGGCG	0.627													6	13					0	0	1	0	0
TRIM62	55223	broad.mit.edu	37	1	33631164	33631164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:33631164C>T	uc001bxb.2	-	2	1050	c.412G>A	c.(412-414)GAG>AAG	p.E138K		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	138	Potential.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				TCCTTCAGCTCCCTCTGAAAC	0.642													12	0					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34008484	34008484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:34008484C>T	uc001bxn.1	-	57	8710	c.8681G>A	c.(8680-8682)GGG>GAG	p.G2894E	CSMD2_uc001bxm.1_Missense_Mutation_p.G3038E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2894	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCAGGGTTCCCACAAGAGAT	0.493													9	2					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34038290	34038290	+	Silent	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:34038290A>T	uc001bxn.1	-	51	7613	c.7584T>A	c.(7582-7584)GCT>GCA	p.A2528A	CSMD2_uc001bxm.1_Silent_p.A2526A	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2528	Sushi 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACAGGAAAGAGCTAGCAAAA	0.453													25	4					0	0	1	0	0
TFAP2E	339488	broad.mit.edu	37	1	36056263	36056263	+	Silent	SNP	C	T	T	rs140768899	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:36056263C>T	uc010ohy.1	+	6	1141	c.933C>T	c.(931-933)TTC>TTT	p.F311F	PSMB2_uc001bzd.1_Intron	NM_178548	NP_848643	Q6VUC0	AP2E_HUMAN	transcription factor AP-2 epsilon (activating	311	H-S-H (helix-span-helix), dimerization.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				CCCGAGACTTCGGTTACGTCT	0.642													8	12					0	0	1	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36557677	36557678	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:36557677_36557678CC>TT	uc001bzt.2	+	4	736_737	c.683_684CC>TT	c.(682-684)TCC>TTT	p.S228F	ADPRHL2_uc001bzu.2_Missense_Mutation_p.S74F	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	228						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				GATGCCCAGTCCGTCTTGGATG	0.604													17	2					0	0	1	0	0
COL8A2	1296	broad.mit.edu	37	1	36564462	36564462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:36564462G>A	uc001bzv.1	-	2	827	c.820C>T	c.(820-822)CCT>TCT	p.P274S	COL8A2_uc001bzw.1_Missense_Mutation_p.P209S	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	274	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ACTCCAGGAGGTCCTTTTGGG	0.692													14	1					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36758296	36758297	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:36758296_36758297CC>TT	uc001cae.3	+	7	2240_2241	c.2016_2017CC>TT	c.(2014-2019)AGCCCA>AGTTCA	p.P673S	THRAP3_uc001caf.3_Missense_Mutation_p.P673S	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	673					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ACAAGAAAAGCCCAGAGATACA	0.411			T	USP6	aneurysmal bone cysts								28	45					0	0	1	0	0
RRAGC	64121	broad.mit.edu	37	1	39318076	39318076	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:39318076G>A	uc001ccq.2	-	4	748	c.726C>T	c.(724-726)ACC>ACT	p.T242T	RRAGC_uc010oim.1_Silent_p.T208T|RRAGC_uc001ccr.2_Silent_p.T164T	NM_022157	NP_071440	Q9HB90	RRAGC_HUMAN	Ras-related GTP binding C	242					apoptosis|cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade|RNA splicing|small GTPase mediated signal transduction|transcription, DNA-dependent	lysosome|nucleus	GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein heterodimerization activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)				GGTTTTCCAAGGTCGGCAGTT	0.328													78	12					0	0	1	0	0
GJA9	81025	broad.mit.edu	37	1	39341322	39341322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:39341322C>T	uc001cct.1	-	2	730	c.449G>A	c.(448-450)AGA>AAA	p.R150K	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	150	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			CAAGGTTCCTCTGAGTGGAGC	0.423													26	23					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39799086	39799086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:39799086C>T	uc010oiu.1	+	1	2277	c.2146C>T	c.(2146-2148)CCA>TCA	p.P716S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2281					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATGCAGTCATCCATTAGAATT	0.388													14	26					0	0	1	0	0
RLF	6018	broad.mit.edu	37	1	40701717	40701717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:40701717C>T	uc001cfc.3	+	8	1374	c.1343C>T	c.(1342-1344)CCA>CTA	p.P448L	RLF_uc001cfd.3_Missense_Mutation_p.P139L	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	448					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			GCACCGGTTCCAAATTCTCTT	0.373													55	9					0	0	1	0	0
EDN2	1907	broad.mit.edu	37	1	41948231	41948231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:41948231G>A	uc001cgx.2	-	3	322	c.250C>T	c.(250-252)CCG>TCG	p.P84S	EDN2_uc001cgu.2_RNA|EDN2_uc001cgv.2_RNA|EDN2_uc009vwh.2_5'UTR|EDN2_uc001cgw.2_RNA|EDN2_uc009vwi.2_Intron|EDN2_uc009vwj.2_Intron	NM_001956	NP_001947	P20800	EDN2_HUMAN	endothelin 2 preproprotein	84					artery smooth muscle contraction|calcium-mediated signaling|cytokine-mediated signaling pathway|elevation of cytosolic calcium ion concentration|hormonal regulation of the force of heart contraction|inositol phosphate-mediated signaling|macrophage activation|macrophage chemotaxis|neutrophil chemotaxis|positive regulation of cell proliferation|positive regulation of heart rate|positive regulation of leukocyte chemotaxis|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of the force of heart contraction by chemical signal|prostaglandin biosynthetic process|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space	endothelin B receptor binding|hormone activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGTCTTGGCGGGTTTCCCAGG	0.562													39	3					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	43353119	43353119	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:43353119C>T	uc001cij.1	+	4		c.1021C>T								Homo sapiens cDNA clone IMAGE:5170739.																		GGATGAAGTTCCTGCAGATGG	0.682													3	7					0	0	1	0	0
SLC2A1	6513	broad.mit.edu	37	1	43393333	43393333	+	Silent	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:43393333T>G	uc001cik.2	-	9	1746	c.1221A>C	c.(1219-1221)GCA>GCC	p.A407A		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	407	Helical; Name=11; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TGGAGAAGCCTGCAACGGCAA	0.557													20	2					0	0	1	0	0
KDM4A	9682	broad.mit.edu	37	1	44149399	44149399	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:44149399C>T	uc001cjx.2	+	12	1945	c.1779C>T	c.(1777-1779)TCC>TCT	p.S593S	KDM4A_uc010oki.1_Intron	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	593					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						ATAAGAAGTCCAAGGGACGCC	0.463													16	25					0	0	1	0	0
DPH2	1802	broad.mit.edu	37	1	44437138	44437138	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:44437138C>T	uc001ckz.2	+	4	759	c.564C>T	c.(562-564)TCC>TCT	p.S188S	DPH2_uc001cla.2_Intron|DPH2_uc010okk.1_Silent_p.S53S|DPH2_uc001clb.2_Silent_p.S112S	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	188					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				CAGTGGGTTCCCTGAGTCCAG	0.602													14	24					0	0	1	0	0
MMACHC	25974	broad.mit.edu	37	1	45973088	45973088	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:45973088C>T	uc009vxv.2	+	2	291	c.142C>T	c.(142-144)CTG>TTG	p.L48L	MMACHC_uc001cny.2_RNA	NM_015506	NP_056321	Q9Y4U1	MMAC_HUMAN	methylmalonic aciduria (cobalamin deficiency)	48							cobalamin binding				0	Acute lymphoblastic leukemia(166;0.155)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGGACCTACCCTGGCCTTCCT	0.597													19	5					0	0	1	0	0
NSUN4	387338	broad.mit.edu	37	1	46810768	46810768	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:46810768G>T	uc001cpr.1	+	2	498	c.389G>T	c.(388-390)CGA>CTA	p.R130L	NSUN4_uc010omc.1_Missense_Mutation_p.R81L|NSUN4_uc009vyf.1_Missense_Mutation_p.D31Y|NSUN4_uc009vyg.1_Missense_Mutation_p.R81L|NSUN4_uc001cpt.1_RNA|NSUN4_uc001cps.1_Intron	NM_199044	NP_950245	Q96CB9	NSUN4_HUMAN	NOL1/NOP2/Sun domain family 4 protein	130							methyltransferase activity				0	Acute lymphoblastic leukemia(166;0.155)					CCGAACCTTCGATGCTTCACT	0.567													34	0					3.03874e-20	3.07431e-20	1	1	0
CYP4B1	1580	broad.mit.edu	37	1	47279701	47279701	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:47279701C>T	uc001cqm.3	+	6	822	c.738C>T	c.(736-738)TTC>TTT	p.F246F	CYP4B1_uc009vyl.1_Silent_p.F83F|CYP4B1_uc001cqn.3_Silent_p.F247F|CYP4B1_uc009vym.2_Silent_p.F232F|CYP4B1_uc010omk.1_Silent_p.F83F|CYP4B1_uc010oml.1_Silent_p.F84F	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	246					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GCCGCCGCTTCCTGCGGGCCT	0.597													20	40					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514289	47514289	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:47514289G>A	uc001cqt.2	+	10	1510	c.1260G>A	c.(1258-1260)TGG>TGA	p.W420*	CYP4X1_uc001cqr.2_Nonsense_Mutation_p.W419*|CYP4X1_uc001cqs.2_Nonsense_Mutation_p.W355*	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	420						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTGCTGTCTGGAAAAACCCAA	0.418													38	43					0	0	1	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47548115	47548115	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:47548115G>A	uc001cqu.1	+	4	477	c.474G>A	c.(472-474)GAG>GAA	p.E158E		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	158	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TGATGTCTGAGAGTGTTCGGA	0.483													11	26					0	0	1	0	0
TAL1	6886	broad.mit.edu	37	1	47685578	47685578	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:47685578C>T	uc001cqx.2	-	4	1387	c.810G>A	c.(808-810)GGG>GGA	p.G270G	TAL1_uc009vyq.2_Missense_Mutation_p.G27E|TAL1_uc001cqy.2_Silent_p.G270G	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	270	Poly-Gly.				basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						cgccccctcccccacctccac	0.567			T	TRD@|SIL	lymphoblastic leukemia/biphasic								15	2					0	0	1	0	0
TTC39A	22996	broad.mit.edu	37	1	51756260	51756260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:51756260C>T	uc001csl.2	-	15	1517	c.1412G>A	c.(1411-1413)GGG>GAG	p.G471E	TTC39A_uc001csk.2_Missense_Mutation_p.G436E|TTC39A_uc010ond.1_Missense_Mutation_p.G408E|TTC39A_uc010one.1_Missense_Mutation_p.G435E|TTC39A_uc010onf.1_Missense_Mutation_p.G439E|TTC39A_uc001csj.2_Missense_Mutation_p.G72E	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	471							binding			skin(1)	1						CGGCTGCTTCCCAATCACGGC	0.323													3	10					0	0	1	0	0
NRD1	4898	broad.mit.edu	37	1	52344246	52344246	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:52344246C>T	uc001ctc.3	-	1	364	c.42G>A	c.(40-42)CGG>CGA	p.R14R	NRD1_uc001ctd.3_Silent_p.R14R|NRD1_uc001cte.2_5'Flank|NRD1_uc001ctf.2_Silent_p.R14R|NRD1_uc010ong.1_Intron|NRD1_uc009vzc.1_5'Flank	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	14					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						ACAACTTCCTCCGGGTGGCAC	0.632													13	0					0	0	1	0	0
LDLRAD1	388633	broad.mit.edu	37	1	54477832	54477832	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:54477832C>T	uc001cwm.1	-	4	342	c.324G>A	c.(322-324)GAG>GAA	p.E108E	LDLRAD1_uc010onz.1_Missense_Mutation_p.R55K|LDLRAD1_uc010ooa.1_Silent_p.E65E|LDLRAD1_uc009vzn.1_RNA	NM_001010978	NP_001010978	Q5T700	LRAD1_HUMAN	low density lipoprotein receptor class A domain	108	LDL-receptor class A 1.					integral to membrane	receptor activity			skin(2)|large_intestine(1)	3						AGCTCTCATCCTCGTCCTCGC	0.602													17	13					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55050430	55050430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:55050430G>A	uc001cxm.1	+	2	218	c.136G>A	c.(136-138)GAG>AAG	p.E46K	ACOT11_uc001cxj.1_5'UTR|ACOT11_uc001cxk.2_Missense_Mutation_p.E12K|ACOT11_uc001cxl.1_Missense_Mutation_p.E46K	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	46	Acyl coenzyme A hydrolase 1.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						GAACCCCACGGAGGTGCAGAT	0.627													21	5					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55148333	55148333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:55148333G>A	uc010ooe.1	+	14	2710	c.2386G>A	c.(2386-2388)GGA>AGA	p.G796R	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.G364R|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G314R|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.G796R|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_Intron|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_5'UTR	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	796						integral to membrane	binding				0						TCTCAGCAATGGAGCAGAGAT	0.572													30	30					0	0	1	0	0
TTC22	55001	broad.mit.edu	37	1	55266809	55266809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:55266809C>T	uc009vzt.1	-	1	133	c.28G>A	c.(28-30)GAT>AAT	p.D10N	TTC22_uc001cxz.3_Missense_Mutation_p.D10N	NM_001114108	NP_001107580	Q5TAA0	TTC22_HUMAN	tetratricopeptide repeat domain 22 isoform 1	10							binding				0						GCGTCTAGATCGTCGGCCACA	0.672													7	12					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57257924	57257924	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57257924T>C	uc001cym.3	-	2	968	c.562A>G	c.(562-564)ACA>GCA	p.T188A	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.T188A	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	188										ovary(3)|skin(2)	5						GCTCCTTTTGTTTCCAGCTTT	0.473													27	42					0	0	1	0	0
C1orf168	199920	broad.mit.edu	37	1	57258022	57258022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57258022G>A	uc001cym.3	-	2	870	c.464C>T	c.(463-465)TCA>TTA	p.S155L	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.S155L	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	155										ovary(3)|skin(2)	5						GAGAAGGGCTGAAGACATTTC	0.448													44	8					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57351694	57351694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57351694C>T	uc001cyo.2	+	7	1082	c.950C>T	c.(949-951)TCA>TTA	p.S317L		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	317	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						ATGCTGCAGTCATTAATGGAG	0.413													19	14					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57373655	57373655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57373655G>A	uc001cyo.2	+	9	1381	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	417	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CATGGCTGTGGAAGACATTAT	0.517													12	21					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57431583	57431583	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57431583C>T	uc001cyp.2	-	1	106	c.39G>A	c.(37-39)GTG>GTA	p.V13V	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_5'UTR	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	13					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GAAATAGCTCCACCGGCGCCC	0.507													39	7					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57480770	57480770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:57480770C>T	uc001cys.1	-	14	1904	c.1230G>A	c.(1228-1230)ATG>ATA	p.M410I	DAB1_uc001cyt.1_Missense_Mutation_p.M408I|DAB1_uc001cyq.1_Missense_Mutation_p.M408I|DAB1_uc001cyr.1_Missense_Mutation_p.M324I|DAB1_uc009vzw.1_Missense_Mutation_p.M392I|DAB1_uc009vzx.1_Missense_Mutation_p.M410I	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	443					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TTTCTTTGCCCATTTTCTGCC	0.612													35	3					0	0	1	0	0
JUN	3725	broad.mit.edu	37	1	59248101	59248101	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:59248101C>T	uc001cze.2	-	1	1685	c.642G>A	c.(640-642)CAG>CAA	p.Q214Q	uc001czf.2_5'Flank|uc010oop.1_5'Flank	NM_002228	NP_002219	P05412	JUN_HUMAN	jun oncogene	214					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation by host of viral transcription|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein import into nucleus|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway		R-SMAD binding|Rho GTPase activator activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity|transcription factor binding|transcription regulatory region DNA binding				0	all_cancers(7;8.55e-07)				Arsenic trioxide(DB01169)|Irbesartan(DB01029)|Vinblastine(DB00570)	GCACGGGCATCTGCTGGGGCA	0.741			A		sarcoma								15	1					0	0	1	0	0
NFIA	4774	broad.mit.edu	37	1	61872316	61872316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:61872316C>T	uc001czw.2	+	9	1821	c.1337C>T	c.(1336-1338)GCC>GTC	p.A446V	NFIA_uc001czy.2_Missense_Mutation_p.A438V|NFIA_uc010oos.1_Missense_Mutation_p.A491V|NFIA_uc001czv.2_Missense_Mutation_p.A446V|NFIA_uc001czx.2_Missense_Mutation_p.A94V|NFIA_uc009wae.2_RNA	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	446					DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						CCACCGATGGCCAGGCCTGTG	0.647													11	1					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62586944	62586944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:62586944C>T	uc001dab.2	+	38	5096	c.4982C>T	c.(4981-4983)TCA>TTA	p.S1661L	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Missense_Mutation_p.S445L	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1661					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AAAAGAGTTTCAGATCCTTCC	0.423													25	27					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675881	62675881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:62675881G>A	uc001dae.3	+	4	1737	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	479	Glu-rich.									ovary(1)|skin(1)	2						TTCTGAATCAGAGGAGGAAGA	0.413													23	1					0	0	1	0	0
ANGPTL3	27329	broad.mit.edu	37	1	63069664	63069664	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:63069664A>T	uc001das.1	+	6	1007	c.956A>T	c.(955-957)AAG>ATG	p.K319M	DOCK7_uc001dan.2_Intron|DOCK7_uc001dao.2_Intron|DOCK7_uc001dap.2_Intron|DOCK7_uc001daq.2_Intron|DOCK7_uc009wah.1_Intron	NM_014495	NP_055310	Q9Y5C1	ANGL3_HUMAN	angiopoietin-like 3 precursor	319	Fibrinogen C-terminal.				acylglycerol homeostasis|artery morphogenesis|cell-matrix adhesion|cholesterol homeostasis|cholesterol metabolic process|fatty acid metabolic process|glycerol metabolic process|integrin-mediated signaling pathway|lipid storage|negative regulation of lipoprotein lipase activity|negative regulation of phospholipase activity|phospholipid catabolic process|phospholipid homeostasis|positive regulation of angiogenesis|positive regulation of cell migration|positive regulation of lipid catabolic process|triglyceride homeostasis	extracellular space	cell surface binding|growth factor activity|integrin binding|phospholipase inhibitor activity				0						GGCCTAGAGAAGATATACTCC	0.308													24	4					0	0	1	0	0
ROR1	4919	broad.mit.edu	37	1	64515365	64515365	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:64515365T>C	uc001dbj.2	+	3	565	c.166T>C	c.(166-168)TCT>CCT	p.S56P	ROR1_uc001dbi.3_Missense_Mutation_p.S56P	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	56	Ig-like C2-type.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GCTCACAGATTCTTACCTGAC	0.542													47	8					0	0	1	0	0
RAVER2	55225	broad.mit.edu	37	1	65268667	65268667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:65268667G>A	uc001dbs.1	+	6	1192	c.1114G>A	c.(1114-1116)GGA>AGA	p.G372R	RAVER2_uc001dbt.1_Missense_Mutation_p.G251R|RAVER2_uc010opb.1_Missense_Mutation_p.G251R	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	372						cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						AGCCGTTCTTGGAACACCTCA	0.284													18	25					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66036324	66036324	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:66036324C>G	uc001dci.2	+	4	411	c.209C>G	c.(208-210)CCT>CGT	p.P70R	LEPR_uc001dcg.2_Missense_Mutation_p.P70R|LEPR_uc001dch.2_Missense_Mutation_p.P70R|LEPR_uc009waq.2_Missense_Mutation_p.P70R|LEPR_uc001dcj.2_Missense_Mutation_p.P70R|LEPR_uc001dck.2_Missense_Mutation_p.P70R	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	70	Extracellular (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GCTGTTGAACCTAAGTTTAAT	0.393													12	22					0	0	1	0	0
WDR78	79819	broad.mit.edu	37	1	67306349	67306349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:67306349C>T	uc001dcx.2	-	9	1353	c.1297G>A	c.(1297-1299)GAA>AAA	p.E433K	WDR78_uc001dcy.2_Missense_Mutation_p.E433K|WDR78_uc009waw.2_Missense_Mutation_p.E179K|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	433	Glu-rich.									ovary(2)	2						TCTTCAGGTTCAGGTTCTAAA	0.254													32	2					0	0	1	0	0
IL12RB2	3595	broad.mit.edu	37	1	67816686	67816686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:67816686G>A	uc001ddu.2	+	9	1812	c.1172G>A	c.(1171-1173)GGA>GAA	p.G391E	IL12RB2_uc010oqi.1_Missense_Mutation_p.G391E|IL12RB2_uc010oqj.1_Missense_Mutation_p.G391E|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.G391E|IL12RB2_uc010oqm.1_Missense_Mutation_p.G391E|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	391	Fibronectin type-III 3.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						CCTAGAACCGGAAATTGGGCT	0.488													28	5					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70226005	70226005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:70226005G>A	uc001dep.2	+	1	148	c.118G>A	c.(118-120)GAG>AAG	p.E40K	LRRC7_uc001deo.1_Missense_Mutation_p.E78K|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	40	LRR 1.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GGTGCCAAAGGAGGTCTTTAA	0.418													12	1					0	0	1	0	0
PTGER3	5733	broad.mit.edu	37	1	71512661	71512661	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:71512661G>A	uc001dfg.1	-	1	831	c.600C>T	c.(598-600)ACC>ACT	p.T200T	PTGER3_uc001dfh.1_RNA|PTGER3_uc001dfi.1_RNA|PTGER3_uc001dfj.1_RNA|PTGER3_uc001dfk.1_Silent_p.T200T|PTGER3_uc001dfl.1_Silent_p.T200T|PTGER3_uc009wbm.1_Silent_p.T200T|PTGER3_uc001dfm.1_RNA|PTGER3_uc001dfn.2_Silent_p.T200T|PTGER3_uc009wbn.1_Silent_p.T200T|PTGER3_uc009wbo.2_Silent_p.T200T|PTGER3_uc001dfo.2_Silent_p.T200T|PTGER3_uc001dfp.1_Silent_p.T200T|PTGER3_uc001dfq.2_Silent_p.T200T|uc001dfr.2_RNA	NM_198714	NP_942007	P43115	PE2R3_HUMAN	prostaglandin E receptor 3, subtype EP3 isoform	200	Extracellular (Potential).				cell death|positive regulation of fever generation|transcription, DNA-dependent	integral to plasma membrane|nuclear envelope	ligand-dependent nuclear receptor activity|prostaglandin E receptor activity			pancreas(1)|lung(1)|skin(1)	3					Bimatoprost(DB00905)	GCCACTGGACGGTGTACTGGC	0.677													13	14					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507177	74507177	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:74507177G>A	uc001dfy.3	-	7	1630	c.1438C>T	c.(1438-1440)CAG>TAG	p.Q480*	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	480										ovary(2)	2						AAACTGTTCTGAATTGTCTCT	0.328													51	176					0	0	1	0	0
TNNI3K	51086	broad.mit.edu	37	1	74737299	74737299	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:74737299C>T	uc001dgf.1	+	5	402	c.351C>T	c.(349-351)ATC>ATT	p.I117I	TNNI3K_uc001dgc.1_Silent_p.I218I|TNNI3K_uc001dgd.2_Silent_p.I218I|TNNI3K_uc001dge.1_Silent_p.I218I	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	117	ANK 2.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						CAGAATTGATCACTTCTCTGC	0.428													36	288					0	0	1	0	0
TNNI3K	51086	broad.mit.edu	37	1	74833598	74833598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:74833598C>T	uc001dgf.1	+	13	1322	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F	TNNI3K_uc001dgc.1_Missense_Mutation_p.S525F|TNNI3K_uc001dgd.2_Missense_Mutation_p.S525F|TNNI3K_uc001dge.1_Missense_Mutation_p.S525F	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	424						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						CTAGATGGCTCCTATGTGTCT	0.308													28	24					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75036823	75036823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:75036823G>A	uc001dgg.2	-	14	4790	c.4571C>T	c.(4570-4572)TCC>TTC	p.S1524F		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1524										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTGTTGGGGGAAACATCTGC	0.512													86	69					0	0	1	0	0
LHX8	431707	broad.mit.edu	37	1	75622659	75622659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:75622659C>T	uc001dgo.2	+	9	1556	c.892C>T	c.(892-894)CCA>TCA	p.P298S	LHX8_uc001dgq.2_Missense_Mutation_p.P237S	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	298						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CACAGCAGTCCCACCCTCCAG	0.502													45	180					0	0	1	0	0
SLC44A5	204962	broad.mit.edu	37	1	75766337	75766337	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:75766337G>A	uc001dgu.2	-	5	279	c.135C>T	c.(133-135)TTC>TTT	p.F45F	SLC44A5_uc001dgt.2_Silent_p.F45F|SLC44A5_uc001dgs.2_Silent_p.F3F|SLC44A5_uc001dgr.2_Silent_p.F3F|SLC44A5_uc010oqz.1_Silent_p.F84F|SLC44A5_uc010ora.1_Silent_p.F39F|SLC44A5_uc010orb.1_5'UTR	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	45	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TACACAGTAGGAAGATCATAC	0.333													32	30					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	79002193	79002193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:79002193C>T	uc001din.2	+	3	1167	c.901C>T	c.(901-903)CCT>TCT	p.P301S	PTGFR_uc001dim.2_3'UTR	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	301	Helical; Name=7; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	AATCTTAGATCCTTGGGTATA	0.393													31	3					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86252056	86252057	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:86252056_86252057GG>AA	uc001dlj.2	-	48	4081_4082	c.4039_4040CC>TT	c.(4039-4041)CCA>TTA	p.P1347L	COL24A1_uc001dli.2_Missense_Mutation_p.P483L|COL24A1_uc010osd.1_Missense_Mutation_p.P647L|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1347	Collagen-like 15.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTGAATTCCTGGGCTTCCTGGC	0.5													43	6					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86590675	86590675	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:86590675C>T	uc001dlj.2	-	3	1386	c.1344G>A	c.(1342-1344)AGG>AGA	p.R448R	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.R448R	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	448					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CACCTTCTTTCCTTAGATCAA	0.343													13	13					0	0	1	0	0
CLCA2	9635	broad.mit.edu	37	1	86905967	86905967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:86905967C>T	uc001dlr.3	+	8	1502	c.1340C>T	c.(1339-1341)TCA>TTA	p.S447L		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	447	VWFA.|Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		GCCCTGGGTTCATCTGCAGCC	0.423													19	29					0	0	1	0	0
GBP2	2634	broad.mit.edu	37	1	89585970	89585971	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:89585970_89585971CC>TT	uc001dmz.1	-	4	590_591	c.319_320GG>AA	c.(319-321)GGT>AAT	p.G107N	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	107					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		CTCATTGTCACCCTGTAAGTCA	0.391													13	17					0	0	1	0	0
GBP2	2634	broad.mit.edu	37	1	89587621	89587622	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:89587621_89587622GG>AA	uc001dmz.1	-	2	299_300	c.28_29CC>TT	c.(28-30)CCA>TTA	p.P10L	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	10					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		GAGGCTCATTGGGCCCGGCAAG	0.485													25	38					0	0	1	0	0
HFM1	164045	broad.mit.edu	37	1	91861880	91861880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:91861880C>T	uc001doa.3	-	3	254	c.154G>A	c.(154-156)GAG>AAG	p.E52K	HFM1_uc010osu.1_Intron|HFM1_uc010osv.1_Intron|HFM1_uc001doc.1_Missense_Mutation_p.E52K	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	52							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		AATTCTTCCTCTAACTCCTGA	0.308													7	6					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94564538	94564538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:94564538C>T	uc001dqh.2	-	6	684	c.580G>A	c.(580-582)GGA>AGA	p.G194R	ABCA4_uc010otn.1_Missense_Mutation_p.G194R	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	194	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCCGGGACTCCATGAGCGAAC	0.468													11	2					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98060710	98060710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:98060710G>A	uc001drv.2	-	9	1000	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	288					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATCTTTATTGGGTTCTGGCAA	0.368													15	17					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101198190	101198190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:101198190G>A	uc001dti.2	+	7	1862	c.1742G>A	c.(1741-1743)GGA>GAA	p.G581E	VCAM1_uc001dtj.2_Missense_Mutation_p.G489E|VCAM1_uc010ouj.1_Missense_Mutation_p.G519E	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	581	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TTATGTGAAGGAATTAACCAG	0.408													22	29					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103412505	103412505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:103412505G>A	uc001dul.2	-	42	3494	c.3176C>T	c.(3175-3177)CCA>CTA	p.P1059L	COL11A1_uc001duk.2_Missense_Mutation_p.P255L|COL11A1_uc001dum.2_Missense_Mutation_p.P1071L|COL11A1_uc001dun.2_Missense_Mutation_p.P1020L|COL11A1_uc009weh.2_Missense_Mutation_p.P943L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1059	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACGTTCTCCTGGTGAGCCCTA	0.463													9	6					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103573682	103573682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:103573682G>A	uc001dul.2	-	1	371	c.53C>T	c.(52-54)ACC>ATC	p.T18I	COL11A1_uc001dum.2_Missense_Mutation_p.T18I|COL11A1_uc001dun.2_Missense_Mutation_p.T18I|COL11A1_uc009weh.2_Missense_Mutation_p.T18I	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	18					collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGTTGTTACGGTGAAATCCCA	0.532													17	2					0	0	1	0	0
AMY2A	279	broad.mit.edu	37	1	104160223	104160224	+	Missense_Mutation	DNP	GG	AA	AA	rs148925092		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:104160223_104160224GG>AA	uc001dut.2	+	1	225_226	c.161_162GG>AA	c.(160-162)GGG>GAA	p.G54E	AMY2A_uc010ouq.1_Missense_Mutation_p.G54E	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	54					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	GGATTTGGAGGGGTTCAGGTGG	0.411													112	23					0	0	1	0	0
AKNAD1	254268	broad.mit.edu	37	1	109394869	109394869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:109394869C>T	uc001dwa.2	-	2	687	c.418G>A	c.(418-420)GAC>AAC	p.D140N	AKNAD1_uc010ovb.1_Intron|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	140										ovary(3)	3						TCAAAACTGTCGGCATTTGAG	0.363													9	15					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109795155	109795155	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:109795155C>A	uc001dxa.3	+	1	2515	c.2454C>A	c.(2452-2454)GAC>GAA	p.D818E		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	818	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TCCTGCGAGACTCCTACCAGG	0.542													105	157					6.23761e-45	6.33214e-45	1	1	0
CELSR2	1952	broad.mit.edu	37	1	109806962	109806962	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:109806962C>A	uc001dxa.3	+	10	5325	c.5264C>A	c.(5263-5265)GCC>GAC	p.A1755D		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1755	Extracellular (Potential).|Laminin G-like 2.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GGCGGTGTGGCCCGTGGCTTT	0.677											OREG0013632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	125	141					4.26851e-46	4.33401e-46	1	1	0
KCNA10	3744	broad.mit.edu	37	1	111060963	111060963	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:111060963C>T	uc001dzt.1	-	1	835	c.447G>A	c.(445-447)GGG>GGA	p.G149G		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	149						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		GCCGAATTTTCCCACCAGATT	0.448													22	23					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112042916	112042916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:112042916G>A	uc001ebh.3	-	2	1380	c.613C>T	c.(613-615)CGG>TGG	p.R205W	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	205	Cytoplasmic (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	AGTTTGTTCCGAATGATGTAA	0.428													26	2					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112045922	112045922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:112045922C>T	uc001ebh.3	-	1	822	c.55G>A	c.(55-57)GAA>AAA	p.E19K	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Missense_Mutation_p.E19K	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	19	Helical; Name=1; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	ATGAAAATTTCCATGGTGATG	0.532													9	7					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114402005	114402005	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:114402005G>A	uc001eds.2	-	2	295	c.165C>T	c.(163-165)ATC>ATT	p.I55I	uc001edv.1_Intron|PTPN22_uc009wgq.2_Silent_p.I55I|PTPN22_uc010owo.1_5'UTR|PTPN22_uc001edt.2_Silent_p.I55I|PTPN22_uc009wgr.2_Silent_p.I55I|PTPN22_uc009wgs.2_Silent_p.I55I|PTPN22_uc001edu.2_Silent_p.I55I	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	55	Tyrosine-protein phosphatase.				negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTTTTTCTTGATATTCTTGG	0.358													69	12					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115428861	115428861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:115428861C>T	uc001efr.2	+	14	1330	c.1121C>T	c.(1120-1122)TCG>TTG	p.S374L	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.S374L|SYCP1_uc009wgw.2_Missense_Mutation_p.S374L	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	374	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTGCTCATTCGTTTGTGGTT	0.308													17	28					0	0	1	0	0
IGSF3	3321	broad.mit.edu	37	1	117158795	117158795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:117158795G>A	uc001egr.1	-	3	1033	c.328C>T	c.(328-330)CTT>TTT	p.L110F	IGSF3_uc001egq.1_Missense_Mutation_p.L110F	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	110	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		CGGGCCTGAAGATCTGTGATG	0.522													27	32					0	0	1	0	0
CD2	914	broad.mit.edu	37	1	117311262	117311262	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:117311262C>T	uc001egu.3	+	5	942	c.913C>T	c.(913-915)CAG>TAG	p.Q305*		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	305	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	ACACCGTGTTCAGCACCAGCC	0.612													54	79					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117559820	117559820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:117559820G>A	uc010oxb.1	+	5	1395	c.1337G>A	c.(1336-1338)AGC>AAC	p.S446N	CD101_uc009whd.2_Missense_Mutation_p.S446N|CD101_uc010oxc.1_Missense_Mutation_p.S446N|CD101_uc010oxd.1_Missense_Mutation_p.S384N	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	446	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CTGTCTGTGAGCTGGTGGCAC	0.577													52	30					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117564216	117564216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:117564216C>T	uc010oxb.1	+	7	2097	c.2039C>T	c.(2038-2040)TCA>TTA	p.S680L	CD101_uc009whd.2_Missense_Mutation_p.S680L|CD101_uc010oxc.1_Missense_Mutation_p.S680L|CD101_uc010oxd.1_Missense_Mutation_p.S618L	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	680	Ig-like C2-type 6.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AAAGTGAATTCAAGGAGTCAA	0.308													5	13					0	0	1	0	0
GDAP2	54834	broad.mit.edu	37	1	118424453	118424453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:118424453G>A	uc001ehf.2	-	12	1593	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	GDAP2_uc001ehg.2_Missense_Mutation_p.R432C	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	432	CRAL-TRIO.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		ACCTTTGAACGAAATGTGGGA	0.328													16	77					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118583359	118583359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:118583359C>T	uc001ehk.2	-	22	3228	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1054						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTACCTTTTTCAAACATTGTC	0.403													30	12					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119474246	119474246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:119474246C>T	uc001ehl.1	-	2	412	c.97G>A	c.(97-99)GGC>AGC	p.G33S		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	139	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CCTTACCTGCCTGCTTTGGTG	0.433													28	24					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120301896	120301896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:120301896C>T	uc001eid.2	-	4	746	c.695G>A	c.(694-696)GGA>GAA	p.G232E	HMGCS2_uc010oxj.1_Missense_Mutation_p.G190E|HMGCS2_uc001eie.2_Missense_Mutation_p.G140E	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	232					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		CATATGGGTTCCCCTCAGCCC	0.478													272	168					0	0	1	0	0
HMGCS2	3158	broad.mit.edu	37	1	120306940	120306940	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:120306940G>A	uc001eid.2	-	2	465	c.414C>T	c.(412-414)TCC>TCT	p.S138S	HMGCS2_uc010oxj.1_Silent_p.S138S|HMGCS2_uc001eie.2_Silent_p.S46S	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	138					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TGACAGCTTTGGACTTGTCAA	0.527													147	616					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120510782	120510782	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:120510782G>A	uc001eik.2	-	7	1438	c.1182C>T	c.(1180-1182)CCC>CCT	p.P394P	NOTCH2_uc001eil.2_Silent_p.P394P|NOTCH2_uc001eim.3_Silent_p.P311P	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	394	EGF-like 10.|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCCCATTTAGGGGGTTGGTGT	0.517			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome		OREG0013734	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	92	506					0	0	1	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767737	143767737	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:143767737C>A	uc001ejt.2	-	1	145	c.112G>T	c.(112-114)GCT>TCT	p.A38S		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	38	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						GTGCTCAGAGCACGAAAGTTT	0.468													71	241					4.18771e-30	4.24876e-30	1	1	0
PPIAL4G	644591	broad.mit.edu	37	1	143767834	143767834	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:143767834G>A	uc001ejt.2	-	1	48	c.15C>T	c.(13-15)GTC>GTT	p.V5V		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	5					protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						CAAAAAAGATGACGGAGTTGA	0.403													13	194					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144815953	144815953	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:144815953A>G	uc009wig.1	+	12	1400	c.1324A>G	c.(1324-1326)AAT>GAT	p.N442D	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.N442D|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.N171D|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.N102D	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	442	NBPF 2.					cytoplasm					0						CAACGATGACAATGAAGATGT	0.423													47	174					0	0	1	0	0
LIX1L	128077	broad.mit.edu	37	1	145492339	145492339	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:145492339C>T	uc001enr.2	+	3	635	c.561C>T	c.(559-561)ATC>ATT	p.I187I	NBPF10_uc001emp.3_Intron	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	187										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ATGAGTTCATCGAGAAGAGTG	0.493													30	104					0	0	1	0	0
ITGA10	8515	broad.mit.edu	37	1	145533450	145533450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:145533450C>T	uc001eoa.2	+	12	1409	c.1333C>T	c.(1333-1335)CGC>TGC	p.R445C	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.R314C|ITGA10_uc009wiw.2_Missense_Mutation_p.R302C|ITGA10_uc010oyw.1_Missense_Mutation_p.R390C	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	445	Extracellular (Potential).|FG-GAP 4.				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGGTGGACGCCGCCTGTTTCT	0.522													90	97					0	0	1	0	0
ACP6	51205	broad.mit.edu	37	1	147131132	147131132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:147131132G>A	uc001epr.2	-	4	966	c.502C>T	c.(502-504)CGG>TGG	p.R168W	ACP6_uc009wjj.1_Missense_Mutation_p.R125W	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	168					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					TCCAGATTCCGAAAAATGTTA	0.413													26	153					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147381033	147381033	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:147381033A>T	uc001epu.1	+	2	1014	c.951A>T	c.(949-951)CAA>CAT	p.Q317H		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	317	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGGGCTACCAAGAGACACTGC	0.627													15	18					0	0	1	0	0
NBPF15	284565	broad.mit.edu	37	1	148591227	148591227	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:148591227A>G	uc001esc.2	+	15	1781	c.1292A>G	c.(1291-1293)AAA>AGA	p.K431R	NBPF15_uc001esb.1_Missense_Mutation_p.K431R	NM_173638	NP_775909	Q8N660	NBPFF_HUMAN	hypothetical protein LOC284565	431	NBPF 4.					cytoplasm					0	all_hematologic(923;0.032)					CTGGATGAGAAAGAGCCTGAA	0.473													48	31					0	0	1	0	0
LOC645166	645166	broad.mit.edu	37	1	148932797	148932797	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:148932797G>A	uc010pbc.1	+	2		c.112G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CTGCTGGCCAGACCCCCAAGC	0.587													35	166					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149882500	149882500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:149882500G>A	uc001etg.2	-	4	1324	c.833C>T	c.(832-834)TCC>TTC	p.S278F	SV2A_uc001eth.2_Missense_Mutation_p.S278F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	278	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GGAGAAATAGGAGAAGACAAT	0.522													10	49					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149902842	149902842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:149902842G>A	uc001etl.3	-	14	1557	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F	SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.L364F|MTMR11_uc010pbm.1_Missense_Mutation_p.P352L|MTMR11_uc010pbn.1_3'UTR	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	436	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			TCAAGGAAGAGGAGAAACACC	0.473													25	20					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149943100	149943100	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:149943100G>A	uc001etn.2	-	3	521	c.165C>T	c.(163-165)TCC>TCT	p.S55S	OTUD7B_uc001eto.2_Missense_Mutation_p.P21L	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	55					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CCTCACTAAAGGATGGGGGTA	0.537													50	80					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150445246	150445246	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:150445246C>T	uc009wlr.2	+	11	4023	c.3822C>T	c.(3820-3822)CCC>CCT	p.P1274P	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Silent_p.P1248P	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1274	Pro-rich.						protein binding			ovary(1)	1						CTCCTCCTCCCCCTCCTGGGG	0.622													28	85					0	0	1	0	0
TARS2	80222	broad.mit.edu	37	1	150463097	150463097	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:150463097C>T	uc001euq.2	+	4	415	c.408C>T	c.(406-408)ACC>ACT	p.T136T	TARS2_uc010pcd.1_Intron|TARS2_uc001eur.2_Silent_p.T136T|TARS2_uc009wlt.2_Intron|TARS2_uc009wls.2_Silent_p.T136T	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	136					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	ACTCCAGCACCCATGTCCTGG	0.483													72	77					0	0	1	0	0
ECM1	1893	broad.mit.edu	37	1	150484099	150484099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:150484099C>T	uc001eus.2	+	7	1074	c.875C>T	c.(874-876)TCC>TTC	p.S292F	ECM1_uc010pce.1_3'UTR|ECM1_uc010pcf.1_3'UTR|ECM1_uc001eut.2_Intron|ECM1_uc001euu.2_Missense_Mutation_p.S321F|ECM1_uc001euv.2_Missense_Mutation_p.S319F|ECM1_uc009wlu.2_Missense_Mutation_p.S52F	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	292	2 X approximate repeats.|2.				angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CCTGATATTTCCTCGGGTCTT	0.622													45	43					0	0	1	0	0
CELF3	11189	broad.mit.edu	37	1	151688402	151688402	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:151688402C>A	uc001eys.1	-	1	889	c.95G>T	c.(94-96)CGG>CTG	p.R32L	CELF3_uc001eyr.2_Missense_Mutation_p.R32L|CELF3_uc009wmy.2_Missense_Mutation_p.R32L|CELF3_uc009wmx.1_Missense_Mutation_p.R32L|CELF3_uc001eyt.2_5'UTR|CELF3_uc010pdi.1_Missense_Mutation_p.R32L|C1orf230_uc001eyu.2_Intron	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	32	RRM 1.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						CTCAAAGATCCGACCAAACTG	0.592													26	68					1.1804e-14	1.19151e-14	1	1	0
LINGO4	339398	broad.mit.edu	37	1	151773804	151773804	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:151773804C>T	uc001ezf.1	-	2	1567	c.1377G>A	c.(1375-1377)GGG>GGA	p.G459G		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	459	Extracellular (Potential).|Ig-like C2-type.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCCTTACTCTCCCAGCCCTGC	0.612													35	185					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151787517	151787517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:151787517C>T	uc001ezh.2	-	5	791	c.683G>A	c.(682-684)CGA>CAA	p.R228Q	RORC_uc001ezg.2_Missense_Mutation_p.R207Q|RORC_uc010pdo.1_Missense_Mutation_p.R282Q|RORC_uc010pdp.1_Missense_Mutation_p.R228Q	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	228	Hinge (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AAGTCCACATCGGTCAGGGGT	0.612													20	15					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058190	152058190	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152058190C>T	uc001ezo.1	-	3	2033	c.1968G>A	c.(1966-1968)CAG>CAA	p.Q656Q		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	656							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTGTGGATTCCTGTGCTTCTG	0.537													94	121					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152086421	152086421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152086421G>A	uc001ezp.2	-	1	136	c.136C>T	c.(136-138)CGG>TGG	p.R46W	TCHH_uc009wne.1_Missense_Mutation_p.R46W	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	46	EF-hand 1.|S-100-like.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTCTTACCCGAAGCACAGCT	0.378													51	71					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152192218	152192218	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152192218G>A	uc001ezt.1	-	3	1963	c.1887C>T	c.(1885-1887)ACC>ACT	p.T629T		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	629	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTGACCTGAGGTAGCTCCAT	0.567													222	239					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277889	152277889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152277889G>A	uc001ezu.1	-	3	9509	c.9473C>T	c.(9472-9474)TCC>TTC	p.S3158F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3158	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCACTTCTGGATCCTGACTG	0.552									Ichthyosis				84	314					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279796	152279796	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152279796T>C	uc001ezu.1	-	3	7602	c.7566A>G	c.(7564-7566)CAA>CAG	p.Q2522Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2522	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGTCTCCTGATTGTTCATCGT	0.587									Ichthyosis				279	251					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279971	152279971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152279971C>T	uc001ezu.1	-	3	7427	c.7391G>A	c.(7390-7392)GGA>GAA	p.G2464E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2464	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCGGGTGTCCATGAATGGT	0.577									Ichthyosis				84	568					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280124	152280124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152280124G>A	uc001ezu.1	-	3	7274	c.7238C>T	c.(7237-7239)TCT>TTT	p.S2413F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2413	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTAGAGGAAAGACCCTGAACG	0.607									Ichthyosis				109	186					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281535	152281535	+	Missense_Mutation	SNP	G	A	A	rs146249485		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152281535G>A	uc001ezu.1	-	3	5863	c.5827C>T	c.(5827-5829)CTT>TTT	p.L1943F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1943	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGATCCAAGATGGTTTCTG	0.567									Ichthyosis				100	315					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152282093	152282093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152282093C>T	uc001ezu.1	-	3	5305	c.5269G>A	c.(5269-5271)GAA>AAA	p.E1757K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1757	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGACCTTTCCCCTGACTGG	0.597									Ichthyosis				139	226					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283351	152283351	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152283351G>A	uc001ezu.1	-	3	4047	c.4011C>T	c.(4009-4011)TCC>TCT	p.S1337S	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1337	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCATGAGAGGAAGACTCTG	0.483									Ichthyosis				168	271					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283846	152283847	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152283846_152283847CC>TT	uc001ezu.1	-	3	3551_3552	c.3515_3516GG>AA	c.(3514-3516)AGG>AAA	p.R1172K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1172	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCTCCTCTCCTTGACCCCGG	0.594									Ichthyosis				125	548					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152285778	152285778	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152285778C>T	uc001ezu.1	-	3	1620	c.1584G>A	c.(1582-1584)CAG>CAA	p.Q528Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	528	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTGGGATCCCTGCCTTCCTC	0.602									Ichthyosis				229	386					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152285890	152285890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152285890C>T	uc001ezu.1	-	3	1508	c.1472G>A	c.(1471-1473)GGA>GAA	p.G491E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	491	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGTCTTCCTCCAGTGCT	0.607									Ichthyosis				153	220					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326736	152326736	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152326736T>C	uc001ezw.3	-	3	3599	c.3526A>G	c.(3526-3528)ACC>GCC	p.T1176A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1176	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAACTTGTGGTTGGACCTGAG	0.483													51	81					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326950	152326950	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152326950T>C	uc001ezw.3	-	3	3385	c.3312A>G	c.(3310-3312)CAA>CAG	p.Q1104Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1104	Ser-rich.|Filaggrin 4.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGCCTGTGTTGTCCAAATC	0.507													226	194					0	0	1	0	0
LCE3E	353145	broad.mit.edu	37	1	152538541	152538541	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152538541G>A	uc001faa.2	-	2	200	c.144C>T	c.(142-144)TCC>TCT	p.S48S		NM_178435	NP_848522	Q5T5B0	LCE3E_HUMAN	late cornified envelope 3E	48					keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		Lung(1;0.000294)|LUAD - Lung adenocarcinoma(1;0.00527)|LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)		AGCCGCCCTCGGAGCTAGGGC	0.662													19	79					0	0	1	0	0
IVL	3713	broad.mit.edu	37	1	152882400	152882400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:152882400C>T	uc001fau.2	+	2	173	c.127C>T	c.(127-129)CCA>TCA	p.P43S		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	43					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACTGCCTCCCCCATGCCAGAA	0.552													45	48					0	0	1	0	0
SPRR2G	6706	broad.mit.edu	37	1	153122441	153122441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153122441G>A	uc009wod.1	-	2	267	c.146C>T	c.(145-147)CCA>CTA	p.P49L		NM_001014291	NP_001014313	Q9BYE4	SPR2G_HUMAN	small proline-rich protein 2G	49					keratinization	cornified envelope|cytoplasm					0	all_lung(78;1.78e-30)|Lung NSC(65;7.29e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGGCATGGTGGAGGTGGGCA	0.572													63	45					0	0	1	0	0
LELP1	149018	broad.mit.edu	37	1	153177331	153177331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153177331G>A	uc001fbl.2	+	2	258	c.148G>A	c.(148-150)GAA>AAA	p.E50K		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	50	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGCCCATGGGAAAAGTGTCC	0.562													36	69					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153277427	153277427	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153277427C>T	uc001fbn.1	-	3	425	c.372G>A	c.(370-372)AAG>AAA	p.K124K		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	124					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTTACCTATCTTATTGCCAA	0.512													20	37					0	0	1	0	0
S100A7L2	645922	broad.mit.edu	37	1	153410677	153410677	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153410677G>A	uc010pdx.1	-	2	240	c.162C>T	c.(160-162)TTC>TTT	p.F54F		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCCACTGAGGAAGTTGGGGA	0.522													15	51					0	0	1	0	0
S100A7L2	645922	broad.mit.edu	37	1	153410754	153410754	+	Missense_Mutation	SNP	G	A	A	rs140012440		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153410754G>A	uc010pdx.1	-	2	163	c.85C>T	c.(85-87)CGC>TGC	p.R29C		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGTATTGGCGAAACATCGCG	0.443													20	80					0	0	1	0	0
INTS3	65123	broad.mit.edu	37	1	153719773	153719773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153719773G>A	uc009wom.2	+	6	672	c.451G>A	c.(451-453)GAA>AAA	p.E151K	INTS3_uc001fct.2_Missense_Mutation_p.E151K|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	151					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTTGGTACGGGAACTGGTGAA	0.453													16	62					0	0	1	0	0
DENND4B	9909	broad.mit.edu	37	1	153909204	153909204	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153909204C>T	uc001fdd.1	-	16	2654	c.2253G>A	c.(2251-2253)CGG>CGA	p.R751R		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	751										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TCTGTGCCATCCGCTGTGCAA	0.507													7	17					0	0	1	0	0
CRTC2	200186	broad.mit.edu	37	1	153924114	153924114	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:153924114G>A	uc010ped.1	-	11	1096	c.1026C>T	c.(1024-1026)TCC>TCT	p.S342S	CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_Intron	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	342	Ser-rich.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGACTGCAGGGATGGGTGGC	0.577													58	61					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154091172	154091173	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:154091172_154091173CC>TT	uc001fdw.2	-	11	1510_1511	c.1438_1439GG>AA	c.(1438-1440)GGA>AAA	p.G480K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.G480K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	480						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			ATATAACATTCCCATAGGATGA	0.337													32	151					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154492803	154492804	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:154492803_154492804GG>AA	uc009wow.2	+	5	1003_1004	c.165_166GG>AA	c.(163-168)AAGGAC>AAAAAC	p.D56N	TDRD10_uc001ffd.2_Missense_Mutation_p.D56N|TDRD10_uc001ffe.2_5'Flank	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	56	RRM.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACCTTCTAAAGGACTTCAACCC	0.436													31	39					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154516556	154516556	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:154516556C>T	uc009wow.2	+	9	1459	c.621C>T	c.(619-621)ACC>ACT	p.T207T	TDRD10_uc001ffd.2_Silent_p.T207T|TDRD10_uc001ffe.2_Silent_p.T128T	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	207							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TCCCGAAGACCCCGTTTTTCT	0.622													59	49					0	0	1	0	0
LENEP	55891	broad.mit.edu	37	1	154966191	154966191	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:154966191G>A	uc001fgi.2	+	1	130	c.108G>A	c.(106-108)TGG>TGA	p.W36*		NM_018655	NP_061125	Q9Y5L5	LENEP_HUMAN	lens epithelial protein	36					multicellular organismal development		DNA binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCACAGGGTGGGAGGGCTTCC	0.607													28	47					0	0	1	0	0
DCST1	149095	broad.mit.edu	37	1	155015275	155015275	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155015275C>T	uc001fgn.1	+	9	1053	c.957C>T	c.(955-957)TCC>TCT	p.S319S	DCST1_uc010per.1_Silent_p.S344S|DCST1_uc010pes.1_Silent_p.S294S	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	319	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CCTACGACTCCCTCAACCAGT	0.438													39	82					0	0	1	0	0
THBS3	7059	broad.mit.edu	37	1	155170709	155170709	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155170709C>T	uc001fix.2	-	13	1550	c.1527G>A	c.(1525-1527)GGG>GGA	p.G509G	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Silent_p.G500G|THBS3_uc001fiz.2_Silent_p.G472G|THBS3_uc001fiy.2_Silent_p.G38G|THBS3_uc010pfu.1_Silent_p.G389G|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	509	TSP type-3 2.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TGATCCCATCCCCATCAGCAT	0.542													43	261					0	0	1	0	0
GBA	2629	broad.mit.edu	37	1	155205541	155205541	+	Missense_Mutation	SNP	G	A	A	rs74598136		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155205541G>A	uc001fjh.2	-	9	1469	c.1319C>T	c.(1318-1320)CCC>CTC	p.P440L	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Missense_Mutation_p.P327L|GBA_uc010pfx.1_Missense_Mutation_p.P391L|GBA_uc001fji.2_Missense_Mutation_p.P440L|GBA_uc001fjj.2_Missense_Mutation_p.P440L|GBA_uc001fjk.2_Missense_Mutation_p.P440L|GBA_uc001fjl.2_Missense_Mutation_p.P440L|GBA_uc010pfy.1_Missense_Mutation_p.P353L	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	440			P -> L (in GD1).		carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	TACAATGATGGGACTGTCGAC	0.552									Gaucher_disease_type_I				31	16					0	0	1	0	0
GBA	2629	broad.mit.edu	37	1	155208037	155208037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155208037G>A	uc001fjh.2	-	6	799	c.649C>T	c.(649-651)CCC>TCC	p.P217S	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Missense_Mutation_p.P104S|GBA_uc010pfx.1_Missense_Mutation_p.P168S|GBA_uc001fji.2_Missense_Mutation_p.P217S|GBA_uc001fjj.2_Missense_Mutation_p.P217S|GBA_uc001fjk.2_Missense_Mutation_p.P217S|GBA_uc001fjl.2_Missense_Mutation_p.P217S|GBA_uc010pfy.1_Missense_Mutation_p.P130S|GBA_uc009wqk.1_Missense_Mutation_p.P130S	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	217			P -> S (in GD; type 2).		carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	GATGTCCAGGGGCTGGCAAGG	0.582									Gaucher_disease_type_I				7	22					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155263135	155263135	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155263135C>T	uc001fkb.3	-	9	1309	c.1270_splice	c.e9-1	p.I424_splice	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Splice_Site_p.I393_splice	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1						endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	CCCGGGCAATCTGCAGGTGCC	0.597													15	57					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155313240	155313240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155313240G>A	uc009wqq.2	-	24	8653	c.8173C>T	c.(8173-8175)CCC>TCC	p.P2725S	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.P2720S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2725	BAH.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GTTTCGTGGGGACGGAAATAA	0.463													46	37					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155721887	155721887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155721887C>T	uc001flz.2	-	30	6434	c.6337G>A	c.(6337-6339)GGG>AGG	p.G2113R	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.G2112R|GON4L_uc009wrh.1_Missense_Mutation_p.G2112R|GON4L_uc001fma.1_Missense_Mutation_p.G2113R	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	2113					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GCCAAACCCCCTCTAGGGGCT	0.562													19	144					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155727095	155727095	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155727095T>G	uc001flz.2	-	26	5370	c.5273A>C	c.(5272-5274)CAG>CCG	p.Q1758P	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.Q1758P|GON4L_uc009wrh.1_Missense_Mutation_p.Q1758P|GON4L_uc001fma.1_Missense_Mutation_p.Q1758P|GON4L_uc001fmb.3_Missense_Mutation_p.Q954P	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1758	PAH 2.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTTGAGGAGCTGCCACATCTG	0.527													33	86					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155753858	155753858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155753858G>A	uc001flz.2	-	14	1908	c.1811C>T	c.(1810-1812)TCC>TTC	p.S604F	GON4L_uc001fly.1_Missense_Mutation_p.S604F|GON4L_uc009wrh.1_Missense_Mutation_p.S604F|GON4L_uc001fma.1_Missense_Mutation_p.S604F|GON4L_uc001fmc.2_Missense_Mutation_p.S604F|GON4L_uc001fmd.3_Missense_Mutation_p.S604F|GON4L_uc009wri.2_Missense_Mutation_p.S190F|GON4L_uc009wrj.1_Missense_Mutation_p.S119F|GON4L_uc001fme.2_Missense_Mutation_p.S432F	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	604					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TTCCATGTTGGAGAATCCCAT	0.507													56	40					0	0	1	0	0
SYT11	23208	broad.mit.edu	37	1	155837856	155837856	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155837856G>A	uc001fmg.2	+	2	398	c.135G>A	c.(133-135)GAG>GAA	p.E45E	SYT11_uc010pgq.1_Intron	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	45	Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			AGCAGGCAGAGAAGAAGCAGA	0.527													64	40					0	0	1	0	0
RXFP4	339403	broad.mit.edu	37	1	155911667	155911667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155911667G>A	uc010pgs.1	+	1	188	c.167G>A	c.(166-168)GGA>GAA	p.G56E		NM_181885	NP_871001	Q8TDU9	RL3R2_HUMAN	relaxin 3 receptor 2	56	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	angiotensin type II receptor activity				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGCTTGCTGGGAAATTTGGCG	0.597													47	70					0	0	1	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155935490	155935490	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:155935490G>A	uc001fmt.2	-	5	520	c.402C>T	c.(400-402)CTC>CTT	p.L134L	ARHGEF2_uc001fmr.2_Silent_p.L107L|ARHGEF2_uc001fms.2_Silent_p.L134L|ARHGEF2_uc001fmu.2_Silent_p.L179L|ARHGEF2_uc010pgt.1_Silent_p.L107L|ARHGEF2_uc010pgu.1_Silent_p.L179L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	134					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGGAGCCCAGGAGGGACTGCC	0.622													9	57					0	0	1	0	0
HAPLN2	60484	broad.mit.edu	37	1	156593776	156593776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:156593776G>A	uc001fpn.1	+	4	670	c.263G>A	c.(262-264)GGA>GAA	p.G88E	HAPLN2_uc010phq.1_Missense_Mutation_p.G88E	NM_021817	NP_068589	Q9GZV7	HPLN2_HUMAN	brain link protein-1 precursor	88	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ATCACCAACGGACTGCACGCC	0.701													11	14					0	0	1	0	0
BCAN	63827	broad.mit.edu	37	1	156618425	156618425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:156618425G>A	uc001fpp.2	+	6	1171	c.835G>A	c.(835-837)GAG>AAG	p.E279K	BCAN_uc001fpo.2_Missense_Mutation_p.E279K	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	279	Link 2.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTACTGCCAGGAGCGGGGTGC	0.532													38	120					0	0	1	0	0
ETV3L	440695	broad.mit.edu	37	1	157068665	157068665	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:157068665G>A	uc001fqq.1	-	3	604	c.319C>T	c.(319-321)CTG>TTG	p.L107L		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	107	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				GTCTTATGCAGGATCCTCTTA	0.478													49	97					0	0	1	0	0
FCRL4	83417	broad.mit.edu	37	1	157551414	157551414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:157551414C>T	uc001fqw.2	-	7	1292	c.1156G>A	c.(1156-1158)GGC>AGC	p.G386S	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	386	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GCGACAAGGCCATCTCTGTTG	0.577													22	13					0	0	1	0	0
FCRL1	115350	broad.mit.edu	37	1	157771797	157771797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:157771797G>A	uc001frg.2	-	5	907	c.794C>T	c.(793-795)TCC>TTC	p.S265F	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.S265F|FCRL1_uc001fri.2_Missense_Mutation_p.S265F|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	265	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TTCAGTCAGGGAAAGGTTGAA	0.567													14	152					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158261127	158261127	+	Missense_Mutation	SNP	C	T	T	rs145638725		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158261127C>T	uc001fru.2	+	2	557	c.265C>T	c.(265-267)CGT>TGT	p.R89C	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding	p.R89C(1)		ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GTTGTTATTTCGTTTCTACCT	0.398													22	103					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158435393	158435393	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158435393C>T	uc010pij.1	+	1	42	c.42C>T	c.(40-42)GTC>GTT	p.V14V		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGTTCGTCGTCCTCGGCTTCT	0.507													36	56					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158585192	158585192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158585192C>T	uc001fst.1	-	48	6801	c.6602G>A	c.(6601-6603)AGA>AAA	p.R2201K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2201	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTTCTGTTTTCTCTGGAAAAA	0.453													37	140					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158596668	158596668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158596668C>T	uc001fst.1	-	41	5993	c.5794G>A	c.(5794-5796)GAA>AAA	p.E1932K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1932	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CAGTTGAATTCCTGAAAGGCA	0.453													80	123					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158669536	158669536	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158669536T>A	uc001fsu.1	-	1	907	c.907A>T	c.(907-909)AAA>TAA	p.K303*		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ATGTGCTTTTTTATAGCTTCT	0.383													5	51					0	0	1	0	0
OR6K3	391114	broad.mit.edu	37	1	158687515	158687515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158687515G>A	uc010pip.1	-	1	439	c.439C>T	c.(439-441)CGC>TGC	p.R147C		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					ATTTGATAGCGAAGAGGGTTG	0.493													36	135					0	0	1	0	0
OR6N2	81442	broad.mit.edu	37	1	158746549	158746549	+	Missense_Mutation	SNP	G	A	A	rs144962739		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:158746549G>A	uc010pir.1	-	1	877	c.877C>T	c.(877-879)CGT>TGT	p.R293C		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					TCCTTGTTACGAAGACTGTAG	0.418													67	69					0	0	1	0	0
CADM3	57863	broad.mit.edu	37	1	159170697	159170697	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159170697G>A	uc001ftl.2	+	9	1324	c.1182G>A	c.(1180-1182)AAG>AAA	p.K394K	CADM3_uc001ftk.2_Silent_p.K428K|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	394	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					ACGACAAGAAGGAATATTTCA	0.617													19	103					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159176192	159176192	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159176192C>T	uc001fto.2	+	2	1203	c.963C>T	c.(961-963)CTC>CTT	p.L321L	DARC_uc001ftp.3_Silent_p.L323L	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	321	Cytoplasmic (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CTCTGCCCCTCCCTGAAGGAT	0.557													213	199					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159283485	159283485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159283485G>A	uc010piu.1	-	1	965	c.965C>T	c.(964-966)TCC>TTC	p.S322F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	322	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AAACGCAAAGGAAAAGCCTTC	0.388													53	57					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159409735	159409735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159409735G>A	uc010piv.1	+	1	187	c.187G>A	c.(187-189)GAT>AAT	p.D63N	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	63	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CATCCGAATGGATCTTCATCT	0.448													27	100					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410433	159410433	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159410433G>A	uc010piv.1	+	1	885	c.885G>A	c.(883-885)CTG>CTA	p.L295L	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	295	Helical; Name=7; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CTCCCCTACTGAACCCTGTGG	0.507													42	57					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159778041	159778041	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159778041G>A	uc001fud.3	+	3	168	c.126G>A	c.(124-126)TGG>TGA	p.W42*	FCRL6_uc010pix.1_Nonsense_Mutation_p.W37*|FCRL6_uc001fuc.2_Nonsense_Mutation_p.W49*|FCRL6_uc009wsz.1_Nonsense_Mutation_p.W42*|FCRL6_uc009wta.2_Nonsense_Mutation_p.W42*	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	42	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GTCAGGGATGGAAGAATACAC	0.517													38	31					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159784050	159784050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159784050C>T	uc001fud.3	+	8	1157	c.1115C>T	c.(1114-1116)TCT>TTT	p.S372F	FCRL6_uc001fuc.2_Missense_Mutation_p.S379F|FCRL6_uc009wsz.1_Missense_Mutation_p.S277F|FCRL6_uc009wta.2_Missense_Mutation_p.S372F	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	372	ITIM motif.|Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GTTGTCTACTCTGTGGTGCAT	0.448													64	23					0	0	1	0	0
SLAMF9	89886	broad.mit.edu	37	1	159923209	159923209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:159923209G>A	uc001fus.2	-	2	398	c.281C>T	c.(280-282)TCC>TTC	p.S94F	SLAMF9_uc009wtd.2_Missense_Mutation_p.S94F|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	94	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GATATGCAGGGAATAGCTGGG	0.517													38	75					0	0	1	0	0
NCSTN	23385	broad.mit.edu	37	1	160323917	160323917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:160323917C>T	uc001fvx.2	+	11	1313	c.1189C>T	c.(1189-1191)CTC>TTC	p.L397F	NCSTN_uc001fvy.2_Missense_Mutation_p.L377F|NCSTN_uc010pjf.1_Missense_Mutation_p.L259F|NCSTN_uc001fvz.2_Missense_Mutation_p.L177F|NCSTN_uc010pjg.1_Missense_Mutation_p.L139F	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	397	Extracellular (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding	p.L397L(1)		ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGTGGAGGATCTCCTGGCCAC	0.557													17	35					0	0	1	0	0
SLAMF1	6504	broad.mit.edu	37	1	160607113	160607113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:160607113G>A	uc001fwl.3	-	2	629	c.283C>T	c.(283-285)CGC>TGC	p.R95C	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Missense_Mutation_p.R95C	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	95	Extracellular (Potential).				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			AACTTGTAGCGATCTCCTAGA	0.468													58	61					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160853229	160853229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:160853229G>A	uc001fxc.2	-	3	262	c.146C>T	c.(145-147)CCT>CTT	p.P49L		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	49	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AAATGCACTAGGACATTCGTC	0.408													15	170					0	0	1	0	0
PFDN2	5202	broad.mit.edu	37	1	161072116	161072116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161072116G>A	uc001fxu.2	-	2	175	c.125C>T	c.(124-126)TCC>TTC	p.S42F		NM_012394	NP_036526	Q9UHV9	PFD2_HUMAN	prefoldin subunit 2	42					'de novo' posttranslational protein folding	prefoldin complex	unfolded protein binding				0	all_cancers(52;1.84e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			AGCTGCTTTGGATGCCAGGCC	0.537													47	120					0	0	1	0	0
NIT1	4817	broad.mit.edu	37	1	161090352	161090352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161090352C>T	uc001fxv.1	+	7	857	c.781C>T	c.(781-783)CGC>TGC	p.R261C	PFDN2_uc001fxu.2_5'Flank|NIT1_uc001fxw.2_Intron|NIT1_uc001fxx.1_Missense_Mutation_p.R225C|NIT1_uc001fxy.1_Missense_Mutation_p.R225C|NIT1_uc010pka.1_Missense_Mutation_p.R246C	NM_005600	NP_005591	Q86X76	NIT1_HUMAN	nitrilase 1	261	CN hydrolase.				nitrogen compound metabolic process	mitochondrion	nitrilase activity				0	all_cancers(52;3.39e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			ACAGTGTGGACGCCACCATGA	0.582													104	55					0	0	1	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161167843	161167843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161167843G>A	uc001fyt.3	-	1	1003	c.575C>T	c.(574-576)CCC>CTC	p.P192L	ADAMTS4_uc001fyu.2_Missense_Mutation_p.P192L|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	192	Cysteine switch (By similarity).				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GTTGCACATGGGACCTTGACC	0.647													110	48					0	0	1	0	0
PCP4L1	654790	broad.mit.edu	37	1	161254249	161254249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161254249G>A	uc001gad.2	+	3	433	c.185G>A	c.(184-186)AGG>AAG	p.R62K		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	62	IQ.										0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TTTCAGAAAAGGAAAAAGGAT	0.522													25	49					0	0	1	0	0
FCGR2A	2212	broad.mit.edu	37	1	161476158	161476158	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161476158C>T	uc001gan.2	+	3	194	c.141C>T	c.(139-141)CCC>CCT	p.P47P	FCGR2A_uc001gam.2_Silent_p.P46P|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	47	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AACTTGAGCCCCCGTGGATCA	0.572													63	46					0	0	1	0	0
FCGR2A	2212	broad.mit.edu	37	1	161479651	161479651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161479651G>A	uc001gan.2	+	4	459	c.406G>A	c.(406-408)GGA>AGA	p.G136R	FCGR2A_uc001gam.2_Missense_Mutation_p.G135R|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	136	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GTTCCAGGAGGGAGAAACCAT	0.463													70	64					0	0	1	0	0
HSPA7	3311	broad.mit.edu	37	1	161577088	161577088	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:161577088C>T	uc010pkp.1	+	1	1240	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						TTCATGACTTCGTCCTGGGGG	0.592													50	29					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165513717	165513717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:165513717G>A	uc001gde.2	+	1	240	c.184G>A	c.(184-186)GAG>AAG	p.E62K	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	62	LRR 1.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					GTTCCTGAACGAGAACAGAAT	0.473													115	108					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166891849	166891849	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:166891849G>A	uc001gdx.1	-	8	1248	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	398	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						AAGCTCTCTCGATCCTCTTTG	0.597													85	285					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166927016	166927016	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:166927016C>T	uc001gdx.1	-	2	425	c.369G>A	c.(367-369)ACG>ACA	p.T123T		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	123	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CATGAACAATCGTGATCTCTC	0.448													29	59					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166927205	166927205	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:166927205G>A	uc001gdx.1	-	2	236	c.180C>T	c.(178-180)TCC>TCT	p.S60S		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	60	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CCTGGCAGTAGGACTTGAACT	0.542													117	98					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096242	167096242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:167096242G>A	uc001geb.1	+	5	1874	c.1874G>A	c.(1873-1875)CGG>CAG	p.R625Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	625					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AAGAGACAACGGAGGCTGGAG	0.617													8	27					0	0	1	0	0
BLZF1	8548	broad.mit.edu	37	1	169346076	169346076	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169346076C>T	uc001gfx.1	+	3	764	c.327C>T	c.(325-327)TTC>TTT	p.F109F	BLZF1_uc001gfw.2_Silent_p.F109F|BLZF1_uc001gfy.2_Silent_p.F109F|BLZF1_uc009wvp.1_Silent_p.F86F	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	109					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					AAGGAGAATTCCTTGGTCAGT	0.368													43	84					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169510677	169510677	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169510677G>A	uc001ggg.1	-	13	3796	c.3651C>T	c.(3649-3651)CTC>CTT	p.L1217L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1217	2-4.|B.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TTCTCTGAATGAGTTCTGGAG	0.537													148	252					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169578921	169578921	+	Missense_Mutation	SNP	G	A	A	rs3917742	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169578921G>A	uc001ggi.3	-	8	1219	c.1154C>T	c.(1153-1155)TCG>TTG	p.S385L	SELP_uc001ggh.2_Missense_Mutation_p.S220L|SELP_uc009wvr.2_Missense_Mutation_p.S385L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	385	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CGGCTCACACGAAATAGCTAA	0.478													22	24					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169694922	169694922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169694922G>A	uc001ggm.3	-	13	1953	c.1796C>T	c.(1795-1797)TCA>TTA	p.S599L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	599	Cytoplasmic (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GCTTCCATCTGATTCAAGGCT	0.388													14	56					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169696888	169696888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169696888G>A	uc001ggm.3	-	9	1617	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	487	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ACCTTGGCAGGAAGGAACCTC	0.438													62	91					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169697229	169697230	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169697229_169697230CC>TT	uc001ggm.3	-	8	1405_1406	c.1248_1249GG>AA	c.(1246-1251)GGGGAG>GGAAAG	p.E417K	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	417	Sushi 4.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TTGTCCCACTCCCCTGTGGGGC	0.455													42	142					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169701995	169701995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:169701995G>A	uc001ggm.3	-	3	339	c.182C>T	c.(181-183)TCC>TTC	p.S61F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	61	Extracellular (Potential).|C-type lectin.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GCTCAATATGGAGTTTAGGTA	0.423													51	63					0	0	1	0	0
C1orf129	80133	broad.mit.edu	37	1	170916685	170916685	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:170916685C>T	uc001ghg.2	+	3	173	c.43C>T	c.(43-45)CTG>TTG	p.L15L	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Silent_p.L15L	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	15							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TCTCCAGATTCTGCAAGACAG	0.368													52	57					0	0	1	0	0
BAT2L2	23215	broad.mit.edu	37	1	171544123	171544123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:171544123C>T	uc010pmg.1	+	25	7071	c.6805C>T	c.(6805-6807)CCA>TCA	p.P2269S	BAT2L2_uc010pmh.1_Missense_Mutation_p.P1181S|BAT2L2_uc010pmi.1_Missense_Mutation_p.P106S	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2269							protein C-terminus binding				0						AAAGGGGTCTCCAGTAACTTC	0.433													7	25					0	0	1	0	0
C1orf105	92346	broad.mit.edu	37	1	172417669	172417669	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:172417669A>T	uc001gik.2	+	3	392	c.196A>T	c.(196-198)AAG>TAG	p.K66*		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	66										skin(1)	1						TGTTTTATCTAAGGTACTAAA	0.279													42	48					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173493234	173493234	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:173493234C>T	uc001giz.2	-	21	2938	c.2515_splice	c.e21-1	p.V839_splice	SLC9A11_uc009wwe.2_Splice_Site_p.V397_splice	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11						sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TAAGAAGTACCTAAAAACAAA	0.244													17	16					0	0	1	0	0
KLHL20	27252	broad.mit.edu	37	1	173703100	173703100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:173703100C>T	uc001gjc.2	+	3	451	c.272C>T	c.(271-273)CCC>CTC	p.P91L	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_Missense_Mutation_p.P73L|KLHL20_uc001gjd.2_Missense_Mutation_p.P91L	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	91	BTB.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						GCCTGTAGTCCCTACTTCCGA	0.478													18	98					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175067612	175067612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:175067612G>A	uc001gkl.1	+	9	2113	c.2000G>A	c.(1999-2001)GGG>GAG	p.G667E	TNN_uc010pmx.1_Missense_Mutation_p.G578E	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	667	Fibronectin type-III 5.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GTTCCGGTGGGGAAGGAGCAG	0.627													51	165					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175116091	175116091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:175116091G>A	uc001gkl.1	+	19	3897	c.3784G>A	c.(3784-3786)GGA>AGA	p.G1262R		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1262	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCTTGGAAAGGACATGAATT	0.507											OREG0013992	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	24					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175355239	175355239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:175355239C>T	uc001gkp.1	-	6	1787	c.1706G>A	c.(1705-1707)CGA>CAA	p.R569Q	TNR_uc009wwu.1_Missense_Mutation_p.R569Q	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	569	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CACCTCGTATCGGGAGCCAGG	0.627													22	78					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525627	176525627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176525627C>T	uc001gkz.2	+	2	1333	c.169C>T	c.(169-171)CGA>TGA	p.R57*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.R57*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	57					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCCAAGGTTCGAAGACCCAG	0.567													116	104					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640217	176640217	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176640217C>T	uc001gkz.2	+	4	3267	c.2103C>T	c.(2101-2103)ACC>ACT	p.T701T	PAPPA2_uc001gky.1_Silent_p.T701T|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	701	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTGCTGCCACCTGGCCTTGGG	0.512													45	153					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668303	176668303	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176668303C>A	uc001gkz.2	+	8	3978	c.2814C>A	c.(2812-2814)TAC>TAA	p.Y938*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	938					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCCACCTGTACCACATGAACA	0.587													71	81					1.52808e-22	1.54772e-22	1	1	0
PAPPA2	60676	broad.mit.edu	37	1	176681065	176681065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176681065G>A	uc001gkz.2	+	12	4910	c.3746G>A	c.(3745-3747)AGG>AAG	p.R1249K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1249					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAGGATGACAGGAGTGAACAG	0.453													47	42					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734925	176734925	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176734925G>A	uc001gkz.2	+	15	5439	c.4275G>A	c.(4273-4275)AGG>AGA	p.R1425R	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1425	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTTGTCAAAGGGGATTTGCCC	0.522													115	53					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176811564	176811564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176811564G>A	uc001gkz.2	+	23	6514	c.5350G>A	c.(5350-5352)GAC>AAC	p.D1784N	PAPPA2_uc009www.2_RNA|uc001gla.1_5'Flank	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1784					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CACCTGCCGGGACCCCAAGGC	0.512													17	19					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176833456	176833456	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176833456G>A	uc001glc.2	-	23	4061	c.3849C>T	c.(3847-3849)ATC>ATT	p.I1283I	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1291					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CGTTGTAGGGGATACTCAGGG	0.572													76	131					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176992577	176992577	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:176992577G>A	uc001glc.2	-	7	1613	c.1401C>T	c.(1399-1401)CTC>CTT	p.L467L	ASTN1_uc001glb.1_Silent_p.L467L|ASTN1_uc001gld.1_Silent_p.L467L|ASTN1_uc009wwx.1_Silent_p.L467L|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	467	EGF-like 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AGGGGTCCAGGAGCCGCCGGG	0.612													3	21					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177199208	177199208	+	Missense_Mutation	SNP	C	T	T	rs112761040		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:177199208C>T	uc001glf.2	+	2	508	c.196C>T	c.(196-198)CAC>TAC	p.H66Y		NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	66						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GGGCCCCTTCCACCGCGCTCA	0.637													52	64					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177225162	177225162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:177225162G>A	uc001glf.2	+	3	689	c.377G>A	c.(376-378)GGA>GAA	p.G126E	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	126						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CGCCTCCTTGGAAGGAGACCC	0.468											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	69					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247779	177247779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:177247779G>A	uc001glf.2	+	7	1405	c.1093G>A	c.(1093-1095)GAC>AAC	p.D365N	FAM5B_uc010pna.1_Missense_Mutation_p.D115N|FAM5B_uc001glg.2_Missense_Mutation_p.D260N	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	365						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTGGGCCATGGACACCAGCCT	0.562													48	215					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247848	177247848	+	Missense_Mutation	SNP	C	T	T	rs138472115		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:177247848C>T	uc001glf.2	+	7	1474	c.1162C>T	c.(1162-1164)CGG>TGG	p.R388W	FAM5B_uc010pna.1_Missense_Mutation_p.R138W|FAM5B_uc001glg.2_Missense_Mutation_p.R283W	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	388						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAAGACCCATCGGATCCTACG	0.612													68	61					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249620	177249620	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:177249620C>T	uc001glf.2	+	8	1620	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	FAM5B_uc001glg.2_Silent_p.F331F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	436						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTGGCACTTTCCTGGAACAGA	0.577													29	26					0	0	1	0	0
RASAL2	9462	broad.mit.edu	37	1	178433445	178433445	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:178433445C>T	uc001glr.2	+	13	2987	c.2862C>T	c.(2860-2862)TCC>TCT	p.S954S	RASAL2_uc001glq.2_Silent_p.S1095S|RASAL2_uc009wxc.2_Silent_p.S468S	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	954					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CCACAATGTCCCCAGTAGAGA	0.478													27	49					0	0	1	0	0
C1orf49	84066	broad.mit.edu	37	1	178491468	178491468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:178491468C>T	uc001glt.1	+	9	707	c.595C>T	c.(595-597)CCT>TCT	p.P199S	C1orf49_uc001glu.1_3'UTR|C1orf49_uc001glv.1_Intron|C1orf49_uc001glw.1_Intron	NM_032126	NP_115502	Q5T0J7	CA049_HUMAN	hypothetical protein LOC84066	199						microtubule cytoskeleton					0						agggaacattccttcagaggc	0.114													7	20					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179337940	179337940	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179337940C>G	uc001gmo.2	+	3	230	c.103C>G	c.(103-105)CCT>GCT	p.P35A	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Intron|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.P35A	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	35											0						CTTAGGACTTCCTGAGCTAAA	0.363													5	44					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179497525	179497525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179497525C>T	uc001gmo.2	+	23	2801	c.2674C>T	c.(2674-2676)CAT>TAT	p.H892Y	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.H818Y|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	892	Glu-rich.										0						TGAAAATGTTCATTCCAAACC	0.378													10	41					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179520354	179520354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179520354G>A	uc001gmq.3	-	8	1191	c.1106C>T	c.(1105-1107)CCT>CTT	p.P369L	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Missense_Mutation_p.P301L|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	369	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						TGGCTCAACAGGTTTGGAAGG	0.468													57	74					0	0	1	0	0
NPHS2	7827	broad.mit.edu	37	1	179533844	179533844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179533844G>A	uc001gmq.3	-	2	444	c.359C>T	c.(358-360)TCC>TTC	p.S120F	NPHS2_uc009wxi.2_Missense_Mutation_p.S120F	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	120					excretion	integral to plasma membrane	protein binding				0						GAACCAGATGGAAAAAGGGAA	0.393													35	25					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179561850	179561850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179561850G>A	uc001gnf.1	+	2	350	c.100G>A	c.(100-102)GAG>AAG	p.E34K	TDRD5_uc010pnp.1_Missense_Mutation_p.E34K|uc010pno.1_5'Flank	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	34	Lotus/OST-HTH 1.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GTTGGAGAAGGAGTACCTTTT	0.473													112	91					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179631268	179631268	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179631268G>A	uc001gnf.1	+	14	2440	c.2190G>A	c.(2188-2190)CTG>CTA	p.L730L	TDRD5_uc010pnp.1_Silent_p.L784L|TDRD5_uc001gnh.1_Silent_p.L285L	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	730					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TGCCATGCCTGGAGTCAGTGA	0.403													48	53					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179659850	179659850	+	Silent	SNP	C	T	T	rs144392545		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:179659850C>T	uc001gnf.1	+	17	2968	c.2718C>T	c.(2716-2718)ATC>ATT	p.I906I	TDRD5_uc010pnp.1_Silent_p.I960I|TDRD5_uc001gnh.1_Silent_p.I461I	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	906					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CACCAGAGATCCTAAAGAATG	0.408													31	28					0	0	1	0	0
CEP350	9857	broad.mit.edu	37	1	180063461	180063461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:180063461G>A	uc001gnt.2	+	34	8604	c.8221G>A	c.(8221-8223)GAA>AAA	p.E2741K	CEP350_uc009wxl.2_Missense_Mutation_p.E2740K|CEP350_uc001gnv.2_Missense_Mutation_p.E876K|CEP350_uc001gnw.1_Missense_Mutation_p.E498K|CEP350_uc001gnx.1_Missense_Mutation_p.E498K	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2741	Potential.					centrosome|nucleus|spindle				ovary(4)	4						ACTAAATGAGGAAAAAAAGTC	0.353													22	35					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181687256	181687256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181687256G>A	uc001gow.2	+	12	1756	c.1591G>A	c.(1591-1593)GGG>AGG	p.G531R	CACNA1E_uc009wxs.2_Missense_Mutation_p.G438R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	531	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTATGGCATGGGGCCTCGCCT	0.463													16	32					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181689961	181689961	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181689961C>T	uc001gow.2	+	15	2091	c.1926C>T	c.(1924-1926)ACC>ACT	p.T642T	CACNA1E_uc009wxs.2_Silent_p.T549T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	642	Extracellular (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATTTTGATACCTTCCCTGCAG	0.428													8	22					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181702850	181702850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181702850G>A	uc001gow.2	+	21	3391	c.3226G>A	c.(3226-3228)GAC>AAC	p.D1076N	CACNA1E_uc009wxs.2_Missense_Mutation_p.D964N|CACNA1E_uc001gox.1_Missense_Mutation_p.D302N|CACNA1E_uc009wxt.2_Missense_Mutation_p.D302N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1076	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGCCATCCCCGACGTGGACCC	0.657													8	39					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181727217	181727217	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181727217C>T	uc001gow.2	+	31	4629	c.4464C>T	c.(4462-4464)ATC>ATT	p.I1488I	CACNA1E_uc009wxs.2_Silent_p.I1376I|CACNA1E_uc001gox.1_Silent_p.I714I|CACNA1E_uc009wxt.2_Silent_p.I714I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1488	Helical; Name=S1 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGCCATGATCGCCTTGAATA	0.557													20	69					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181767826	181767826	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181767826C>T	uc001gow.2	+	47	6834	c.6669C>T	c.(6667-6669)ATC>ATT	p.I2223I	CACNA1E_uc009wxs.2_Silent_p.I2111I|CACNA1E_uc009wxt.2_Silent_p.I1492I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2266	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCAACACCATCGGCTCAGCCC	0.672													14	13					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184764395	184764395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:184764395C>T	uc001gra.2	-	14	2697	c.2503G>A	c.(2503-2505)GAA>AAA	p.E835K	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	835	Glu-rich.				negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GCATCCCCTTCCTCGGTACAC	0.617													38	99					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185956672	185956672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:185956672C>T	uc001grq.1	+	20	3273	c.3044C>T	c.(3043-3045)TCC>TTC	p.S1015F	HMCN1_uc001grr.1_Missense_Mutation_p.S356F	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1015	Ig-like C2-type 7.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GTCATCTGGTCCAAGGTAAAT	0.458													87	139					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186275896	186275896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:186275896G>A	uc001gru.3	+	7	1096	c.1045G>A	c.(1045-1047)GAG>AAG	p.E349K	PRG4_uc001grt.3_Missense_Mutation_p.E308K|PRG4_uc009wyl.2_Missense_Mutation_p.E256K|PRG4_uc009wym.2_Missense_Mutation_p.E215K|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	349	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|1.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CACTCCCAAGGAGCCCACGCC	0.552													40	66					0	0	1	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186948542	186948542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:186948542C>T	uc001gsc.2	+	17	2261	c.2056C>T	c.(2056-2058)CCA>TCA	p.P686S	PLA2G4A_uc010pos.1_Missense_Mutation_p.P626S	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	686	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	TTTTCAATATCCAAATCAAGC	0.353													32	52					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196438156	196438156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196438156C>T	uc001gtd.1	-	6	487	c.427G>A	c.(427-429)GAA>AAA	p.E143K	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Missense_Mutation_p.E143K|KCNT2_uc001gtf.1_Missense_Mutation_p.E143K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E143K|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	143	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTAATTATTTCCAAGATGAAG	0.313													5	26					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196658634	196658634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196658634G>A	uc001gtj.3	+	8	1289	c.1049G>A	c.(1048-1050)GGA>GAA	p.G350E	CFH_uc001gti.3_Missense_Mutation_p.G350E|CFH_uc009wyw.2_Missense_Mutation_p.G325E|CFH_uc009wyx.2_Missense_Mutation_p.G286E	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	350	Sushi 6.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GTAGCTGTAGGAAAATATTAC	0.383													7	82					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196695995	196695995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196695995G>A	uc001gtj.3	+	14	2401	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	721	Sushi 12.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CAATTGCTCAGAATCATTTAC	0.433													15	93					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196857301	196857301	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196857301C>T	uc001gto.2	+	1	90	c.21C>T	c.(19-21)GTC>GTT	p.V7V	CFHR4_uc009wyy.2_Silent_p.V7V|CFHR4_uc001gtp.2_Silent_p.V7V	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	7						extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TAATCAATGTCATTCTGACCT	0.343													29	22					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196887394	196887394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196887394G>A	uc001gto.2	+	6	923	c.854G>A	c.(853-855)GGA>GAA	p.G285E	CFHR4_uc009wyy.2_Missense_Mutation_p.G531E|CFHR4_uc001gtp.2_Missense_Mutation_p.G532E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	285	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CAGTTAAAAGGAAAAAGTGAC	0.279													8	52					0	0	1	0	0
CFHR2	3080	broad.mit.edu	37	1	196920078	196920078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:196920078G>A	uc001gtq.1	+	3	427	c.350G>A	c.(349-351)GGA>GAA	p.G117E	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	117	Sushi 2.					extracellular region				skin(2)|ovary(1)	3						TGCAACACAGGATACAGACTT	0.408													17	100					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197032154	197032154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:197032154C>T	uc001gtt.1	-	2	142	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	33	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GGCAATTCTTCCATTTTCCAC	0.318													125	91					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197446918	197446918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:197446918G>A	uc001gtz.2	+	12	4265	c.4130G>A	c.(4129-4131)GGA>GAA	p.G1377E	CRB1_uc010poz.1_Missense_Mutation_p.G1353E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G1265E|CRB1_uc010ppb.1_Missense_Mutation_p.G841E|CRB1_uc010ppd.1_Missense_Mutation_p.G858E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1377	Cytoplasmic (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GCAACTCAGGGAACCTACAGC	0.517													18	72					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201017723	201017723	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201017723C>T	uc001gvv.2	-	36	4655	c.4428G>A	c.(4426-4428)AAG>AAA	p.K1476K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1476	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCGTCTTGATCTTGAGTGCCG	0.562													43	30					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201039419	201039419	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201039419T>G	uc001gvv.2	-	17	2568	c.2341A>C	c.(2341-2343)ATC>CTC	p.I781L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	781	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GGGCTGAAGATGAAGAAGGAG	0.587													60	54					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201054598	201054598	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201054598C>T	uc001gvv.2	-	8	1343	c.1116G>A	c.(1114-1116)CAG>CAA	p.Q372Q		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	372	Binding to the beta subunit (By similarity).|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGACCTCGCCCTGCGTGATCC	0.577											OREG0014068	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	133					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201060904	201060904	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201060904C>T	uc001gvv.2	-	5	785	c.558G>A	c.(556-558)CTG>CTA	p.L186L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	186	I.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGATGGAGTTCAGGACCACCT	0.572													18	12					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201063033	201063033	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201063033C>T	uc001gvv.2	-	3	602	c.375G>A	c.(373-375)CTG>CTA	p.L125L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	125	Helical; Name=S3 of repeat I; (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGTGAAGTCCAGCACATTCC	0.557													38	46					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201184907	201184907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201184907G>A	uc001gwc.2	+	4	1488	c.716G>A	c.(715-717)AGC>AAC	p.S239N	IGFN1_uc001gwb.2_Intron	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GGCCAGTACAGCGTGACACTG	0.642													20	17					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201356080	201356080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201356080C>T	uc001gwm.2	-	3	644	c.409G>A	c.(409-411)GAA>AAA	p.E137K	LAD1_uc009wzu.1_Missense_Mutation_p.E159K	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	137						basement membrane	structural molecule activity				0						ATTTCCAGTTCCTTCTTGGAG	0.642													43	84					0	0	1	0	0
LMOD1	25802	broad.mit.edu	37	1	201869436	201869436	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:201869436C>T	uc001gxb.2	-	2	953	c.705G>A	c.(703-705)GAG>GAA	p.E235E	LMOD1_uc010ppu.1_Silent_p.E184E	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	235	8 X approximate tandem repeats.|5.				muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						TCTTCTCACCCTCTTTTCTGG	0.289													7	18					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202711822	202711822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:202711822G>A	uc001gyf.2	-	17	2551	c.2435C>T	c.(2434-2436)TCT>TTT	p.S812F	KDM5B_uc009xag.2_Missense_Mutation_p.S848F|KDM5B_uc001gyg.1_Missense_Mutation_p.S654F	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	812					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CTGCGCAACAGAGGCACACTT	0.443													65	55					0	0	1	0	0
CHIT1	1118	broad.mit.edu	37	1	203186055	203186055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:203186055C>T	uc001gzn.2	-	11	1459	c.1363G>A	c.(1363-1365)GTG>ATG	p.V455M	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_Intron|CHIT1_uc009xal.1_Missense_Mutation_p.V217M|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.V446M	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	455	Chitin-binding type-2.				chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						TTGCTGAACACCAGGCCTGTC	0.602											OREG0014113	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	133					0	0	1	0	0
SOX13	9580	broad.mit.edu	37	1	204091372	204091372	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:204091372C>G	uc001ham.2	+	9	1464	c.869C>G	c.(868-870)TCC>TGC	p.S290C	SOX13_uc010pqp.1_Missense_Mutation_p.S289C|SOX13_uc010pqq.1_Missense_Mutation_p.S157C	NM_005686	NP_005677	Q9UN79	SOX13_HUMAN	SRY-box 13	290	Pro-rich.				anatomical structure morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2	all_cancers(21;0.0754)|Breast(84;0.116)|all_epithelial(62;0.189)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			CAGGAGCCCTCCCAGCCCCTG	0.632													6	2					0	0	1	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204197961	204197961	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:204197961G>T	uc001hau.2	-	20	3097	c.2780C>A	c.(2779-2781)CCT>CAT	p.P927H		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	927										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GTACCGTTCAGGGATGAGGAC	0.562													30	69					4.22769e-11	4.25869e-11	1	1	0
NFASC	23114	broad.mit.edu	37	1	204951005	204951005	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:204951005G>A	uc001hbj.2	+	21	2655	c.2327G>A	c.(2326-2328)TGG>TAG	p.W776*	NFASC_uc010pra.1_Nonsense_Mutation_p.W772*|NFASC_uc001hbi.2_Nonsense_Mutation_p.W772*|NFASC_uc010prb.1_Nonsense_Mutation_p.W787*|NFASC_uc010prc.1_Nonsense_Mutation_p.W343*|NFASC_uc001hbk.1_Nonsense_Mutation_p.W582*|NFASC_uc001hbl.1_Nonsense_Mutation_p.W26*	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	776	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CGAGAGGCCTGGAACAACGTC	0.602													15	55					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204971857	204971857	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:204971857C>T	uc001hbj.2	+	27	3598	c.3270C>T	c.(3268-3270)ATC>ATT	p.I1090I	NFASC_uc010pra.1_Intron|NFASC_uc001hbi.2_Intron|NFASC_uc010prb.1_Intron|NFASC_uc010prc.1_Intron|NFASC_uc001hbl.1_Intron|NFASC_uc001hbm.1_Silent_p.I113I|NFASC_uc009xbh.1_Intron	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1197	Extracellular (Potential).|Fibronectin type-III 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GTACCGTCATCACCTTTATGA	0.562													19	51					0	0	1	0	0
CNTN2	6900	broad.mit.edu	37	1	205027170	205027170	+	Silent	SNP	G	A	A	rs140395973		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205027170G>A	uc001hbr.2	+	3	461	c.192G>A	c.(190-192)CGG>CGA	p.R64R	CNTN2_uc001hbq.1_5'UTR|CNTN2_uc009xbi.2_5'Flank|CNTN2_uc001hbs.2_5'Flank	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	64	Ig-like C2-type 1.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCCGCGCCCGGGCCAGCCCTC	0.647													29	17					0	0	1	0	0
RBBP5	5929	broad.mit.edu	37	1	205069147	205069147	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205069147G>A	uc001hbu.1	-	8	928	c.798C>T	c.(796-798)ATC>ATT	p.I266I	RBBP5_uc010prd.1_Silent_p.I301I|RBBP5_uc001hbv.1_Silent_p.I266I|RBBP5_uc010pre.1_Silent_p.I133I	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	266	WD 5.				histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			AACCTGCCACGATGTATTCCC	0.522													22	96					0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205129295	205129295	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205129295G>A	uc001hbw.2	-	8	2116	c.2052C>T	c.(2050-2052)GTC>GTT	p.V684V	DSTYK_uc001hbx.2_Silent_p.V684V|DSTYK_uc001hby.1_Silent_p.V145V	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	684	Protein kinase.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						CATCTGGAGGGACAACTGATT	0.498													69	125					0	0	1	0	0
TMCC2	9911	broad.mit.edu	37	1	205210689	205210689	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205210689C>T	uc001hbz.1	+	3	708	c.264C>T	c.(262-264)TTC>TTT	p.F88F	TMCC2_uc010prf.1_Silent_p.F10F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	88						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			AGCACCTGTTCCACAGCCGCC	0.572													6	40					0	0	1	0	0
NUAK2	81788	broad.mit.edu	37	1	205273347	205273347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205273347G>A	uc001hce.2	-	7	1245	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	373					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CTTCTTGAGCGAATGCTGGCG	0.617													18	76					0	0	1	0	0
SLC41A1	254428	broad.mit.edu	37	1	205768148	205768148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:205768148G>A	uc001hdh.1	-	5	1506	c.634C>T	c.(634-636)CCG>TCG	p.P212S	uc001hdi.1_5'Flank	NM_173854	NP_776253	Q8IVJ1	S41A1_HUMAN	solute carrier family 41 member 1	212						integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			skin(2)	2	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AAGGCGTGCGGAATACTGAAG	0.607													9	48					0	0	1	0	0
C1orf186	440712	broad.mit.edu	37	1	206241534	206241534	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:206241534C>T	uc001hdt.1	-	4	894	c.255G>A	c.(253-255)AGG>AGA	p.R85R		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	85						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CTTACTCACGCCTGTAAAGGG	0.552													113	109					0	0	1	0	0
DYRK3	8444	broad.mit.edu	37	1	206821496	206821496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:206821496C>T	uc001hej.2	+	3	1121	c.953C>T	c.(952-954)TCC>TTC	p.S318F	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.S298F	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	318	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TTTGCCCAGTCCATCTTGCAA	0.433													17	103					0	0	1	0	0
FAIM3	9214	broad.mit.edu	37	1	207087140	207087140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:207087140C>T	uc001hey.2	-	2	516	c.337G>A	c.(337-339)GGA>AGA	p.G113R	FAIM3_uc010prz.1_Intron|FAIM3_uc010psa.1_Intron|FAIM3_uc010psb.1_Missense_Mutation_p.G113R	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	113	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					TGGGTCTTTCCCCGGTCTGTG	0.522													18	89					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207105086	207105086	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:207105086C>T	uc001hez.2	-	9	2254	c.2070G>A	c.(2068-2070)AGG>AGA	p.R690R	PIGR_uc009xbz.2_Silent_p.R690R	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	690	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCCAAATTCCCTGGAGTTCT	0.517													57	90					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207110999	207110999	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:207110999C>T	uc001hez.2	-	4	670	c.486G>A	c.(484-486)AGG>AGA	p.R162R	PIGR_uc009xbz.2_Silent_p.R162R	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	162	Ig-like V-type 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ACAAGGACTTCCTCTTTTGAG	0.478													18	21					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207796354	207796354	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:207796354G>A	uc001hfy.2	+	37	6083	c.5943G>A	c.(5941-5943)ACG>ACA	p.T1981T	CR1_uc001hfx.2_Silent_p.T2431T	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1981	Helical; (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TATCTGGTACGATCTTCTTTA	0.328													8	5					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209796985	209796985	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209796985C>T	uc001hhg.2	-	15	2613	c.2223G>A	c.(2221-2223)CAG>CAA	p.Q741Q	LAMB3_uc009xco.2_Silent_p.Q741Q|LAMB3_uc001hhh.2_Silent_p.Q741Q|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	741	Potential.|Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGTCCCTGAGCTGGTCCAAAA	0.662													17	37					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209799204	209799204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209799204C>T	uc001hhg.2	-	13	2155	c.1765G>A	c.(1765-1767)GAT>AAT	p.D589N	LAMB3_uc009xco.2_Missense_Mutation_p.D589N|LAMB3_uc001hhh.2_Missense_Mutation_p.D589N|LAMB3_uc010psl.1_Intron|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	589	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		AGGTCCGCATCATAGGTCTGG	0.682													12	38					0	0	1	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209935900	209935900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209935900C>T	uc001hho.2	+	4	676	c.386C>T	c.(385-387)CCT>CTT	p.P129L	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.P109L|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.P129L|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.P109L|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.P129L	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	129	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		GCCCAGCATCCTCCTCCCTCA	0.577													49	32					0	0	1	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209936438	209936438	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209936438G>A	uc001hho.2	+	6	866	c.576_splice	c.e6+1	p.K192_splice	TRAF3IP3_uc001hhl.2_Splice_Site_p.K172_splice|TRAF3IP3_uc001hhm.1_Splice_Site_p.K192_splice|TRAF3IP3_uc001hhn.2_Splice_Site_p.K172_splice|TRAF3IP3_uc009xcr.2_Splice_Site_p.K192_splice	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator							integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		TCTGGATAAGGTAAGCACATA	0.403													26	17					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209961873	209961873	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209961873G>A	uc001hhq.1	-	9	1559	c.1296C>T	c.(1294-1296)ATC>ATT	p.I432I	IRF6_uc010psm.1_Silent_p.I337I|IRF6_uc009xct.1_Silent_p.I432I	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	432					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		GCTGAGCAACGATGTTATCCT	0.557										HNSCC(57;0.16)			27	101					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209969715	209969715	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:209969715G>A	uc001hhq.1	-	4	620	c.357C>T	c.(355-357)CCC>CCT	p.P119P	IRF6_uc010psm.1_Silent_p.P24P|IRF6_uc009xct.1_Silent_p.P119P	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	119					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCGAGCCCTGGGGCTGAGGGA	0.517										HNSCC(57;0.16)			45	37					0	0	1	0	0
HHAT	55733	broad.mit.edu	37	1	210761279	210761279	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:210761279C>T	uc009xcx.2	+	10	1247	c.1081C>T	c.(1081-1083)CTG>TTG	p.L361L	HHAT_uc010psq.1_Silent_p.L224L|HHAT_uc001hhz.3_Silent_p.L361L|HHAT_uc010psr.1_Silent_p.L362L|HHAT_uc010pss.1_Silent_p.L316L|HHAT_uc009xcy.2_Silent_p.L296L|HHAT_uc010pst.1_Silent_p.L298L|HHAT_uc010psu.1_Silent_p.L296L|HHAT_uc001hia.3_Silent_p.L51L	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	361	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		CCAGCATGGCCTGCTGGGGAC	0.562													32	45					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214171386	214171387	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:214171386_214171387CC>TT	uc001hkh.2	+	2	1780_1781	c.1508_1509CC>TT	c.(1507-1509)TCC>TTT	p.S503F	PROX1_uc001hkg.1_Missense_Mutation_p.S503F	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	503					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		CCCTCCGGCTCCTTCTCTGGAA	0.564													52	77					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215298058	215298058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215298058C>T	uc001hkq.2	+	3	609	c.440C>T	c.(439-441)TCC>TTC	p.S147F	KCNK2_uc001hko.2_Missense_Mutation_p.S143F|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_Intron|KCNK2_uc010pua.1_Intron|KCNK2_uc001hkr.3_Missense_Mutation_p.S132F	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	147							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	TTGGGAAGTTCCTTCTTCTTT	0.368													106	78					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215408272	215408272	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215408272C>T	uc001hkq.2	+	7	1234	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	KCNK2_uc001hko.2_Silent_p.F351F|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc001hkr.3_Silent_p.F340F	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	355	Cytoplasmic (Potential).|Required for basal channel activity (By similarity).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	ATGACAAGTTCCAGCGGGCCA	0.552													99	46					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215408381	215408381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215408381G>A	uc001hkq.2	+	7	1343	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	KCNK2_uc001hko.2_Missense_Mutation_p.E388K|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.E377K	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	392	Cytoplasmic (Potential).|Essential for chloroform and halothane sensitivity (By similarity).|Required for basal channel activity (By similarity).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	CCTGACCAGCGAGAGGGATGT	0.517													9	93					0	0	1	0	0
KCTD3	51133	broad.mit.edu	37	1	215793565	215793565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215793565C>T	uc001hks.2	+	18	2347	c.2053C>T	c.(2053-2055)CCT>TCT	p.P685S	KCTD3_uc001hkt.2_Missense_Mutation_p.P683S|KCTD3_uc010pub.1_Missense_Mutation_p.P583S|KCTD3_uc009xdn.2_Missense_Mutation_p.P409S	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	685						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		AAGAGCTGTCCCTGAAAATGG	0.398													38	27					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215848027	215848027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215848027G>A	uc001hku.1	-	63	13613	c.13226C>T	c.(13225-13227)TCC>TTC	p.S4409F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4409	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGCAGGTGGGAAACCAGCAG	0.483										HNSCC(13;0.011)			16	75					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215853493	215853493	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:215853493T>C	uc001hku.1	-	62	12679	c.12292A>G	c.(12292-12294)AAG>GAG	p.K4098E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4098	Fibronectin type-III 26.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GACATTACCTTAATCACACCA	0.433										HNSCC(13;0.011)			61	45					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216373131	216373131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:216373131C>T	uc001hku.1	-	17	4036	c.3649G>A	c.(3649-3651)GAT>AAT	p.D1217N	USH2A_uc001hkv.2_Missense_Mutation_p.D1217N	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1217	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGAAAAATCGTACTTGGCA	0.517										HNSCC(13;0.011)			55	29					0	0	1	0	0
IARS2	55699	broad.mit.edu	37	1	220312371	220312371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:220312371C>T	uc001hmc.2	+	18	2301	c.2197C>T	c.(2197-2199)CTT>TTT	p.L733F	IARS2_uc001hmd.2_Missense_Mutation_p.L69F	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	733					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	ACTTCGCTTTCTTTTGGGAAA	0.343													18	69					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284141	223284141	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:223284141G>A	uc001hnv.1	-	4	2679	c.2233C>T	c.(2233-2235)CAG>TAG	p.Q745*	TLR5_uc001hnw.1_Nonsense_Mutation_p.Q745*	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	745	Cytoplasmic (Potential).|TIR.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		ATGGCATCCTGGATATTGGCA	0.473													14	57					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284957	223284957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:223284957G>A	uc001hnv.1	-	4	1863	c.1417C>T	c.(1417-1419)CCC>TCC	p.P473S	TLR5_uc001hnw.1_Missense_Mutation_p.P473S	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	473	Extracellular (Potential).|LRR 12.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TCTAAGCTGGGATTCTCTGAA	0.423													44	65					0	0	1	0	0
LEFTY2	7044	broad.mit.edu	37	1	226127470	226127470	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:226127470G>A	uc001hpt.1	-	2	563	c.483C>T	c.(481-483)TCC>TCT	p.S161S	LEFTY2_uc010pvk.1_Silent_p.S127S|LEFTY2_uc009xek.1_Intron	NM_003240	NP_003231	O00292	LFTY2_HUMAN	endometrial bleeding associated factor	161					cell growth|multicellular organismal development|platelet activation|platelet degranulation|transforming growth factor beta receptor signaling pathway	extracellular space|platelet alpha granule lumen	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					AGTCGATGAGGGAGGTGCGGT	0.776													14	3					0	0	1	0	0
CABC1	56997	broad.mit.edu	37	1	227169749	227169749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:227169749C>T	uc001hqm.1	+	11	4171	c.752C>T	c.(751-753)TCC>TTC	p.S251F	CABC1_uc001hqn.1_Missense_Mutation_p.S251F|CABC1_uc009xeq.1_Missense_Mutation_p.S199F|CABC1_uc010pvq.1_5'UTR|CABC1_uc010pvr.1_5'UTR|CABC1_uc001hqo.1_5'UTR|CABC1_uc009xer.1_5'Flank	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	251					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				GTGCTGGGTTCCAGTCCTTTC	0.652													36	23					0	0	1	0	0
PRSS38	339501	broad.mit.edu	37	1	228033810	228033810	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:228033810C>A	uc001hrh.2	+	5	882	c.882C>A	c.(880-882)ATC>ATA	p.I294I		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	294					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						ACATAGAAATCACGCCCACTC	0.557													50	32					1.61004e-24	1.63196e-24	1	1	0
OBSCN	84033	broad.mit.edu	37	1	228456379	228456379	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:228456379G>A	uc009xez.1	+	17	5054	c.5010G>A	c.(5008-5010)TCG>TCA	p.S1670S	OBSCN_uc001hsn.2_Silent_p.S1670S|OBSCN_uc001hso.2_Silent_p.S116S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1670	Poly-Ser.|Ig-like 17.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTTCCAGCTCGAAAGTGCGCG	0.687													44	40					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228509044	228509044	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:228509044G>A	uc009xez.1	+	55	14547	c.14503_splice	c.e55-1	p.V4835_splice	OBSCN_uc001hsn.2_Splice_Site_p.V4835_splice	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and						apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGTGCCCACAGGTTGGGGCCC	0.627													20	13					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228525032	228525032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:228525032C>T	uc009xez.1	+	66	16792	c.16748C>T	c.(16747-16749)TCC>TTC	p.S5583F	OBSCN_uc001hsn.2_Missense_Mutation_p.S5583F|OBSCN_uc001hsr.1_Missense_Mutation_p.S211F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5583					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGGCCATCCTCCAGCATCCAG	0.662													10	6					0	0	1	0	0
TRIM67	440730	broad.mit.edu	37	1	231339623	231339623	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:231339623C>T	uc009xfn.1	+	6	1587	c.1545C>T	c.(1543-1545)GTC>GTT	p.V515V		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	515	Fibronectin type-III.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				TGCCACCCGTCCCCCTACTGC	0.677													21	15					0	0	1	0	0
EGLN1	54583	broad.mit.edu	37	1	231506358	231506358	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:231506358G>A	uc001huv.2	-	3	4254	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	EGLN1_uc001huu.3_Silent_p.F68F	NM_022051	NP_071334	Q9GZT9	EGLN1_HUMAN	egl nine homolog 1	366	Fe2OG dioxygenase.				negative regulation of sequence-specific DNA binding transcription factor activity|oxygen homeostasis|response to hypoxia	cytosol	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-proline dioxygenase activity|protein binding|zinc ion binding				0		Prostate(94;0.194)|Acute lymphoblastic leukemia(190;0.244)			Vitamin C(DB00126)	GGTCAGACCAGAAAAACAGCA	0.423													61	43					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233190031	233190031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:233190031C>T	uc001hvl.2	-	25	4569	c.4334G>A	c.(4333-4335)CGA>CAA	p.R1445Q	PCNXL2_uc001hvk.1_Missense_Mutation_p.R97Q|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1445						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TTCCAGTCCTCGAAGTTGAAA	0.388													14	21					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233489632	233489632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:233489632G>A	uc001hvt.3	+	3	1327	c.1066G>A	c.(1066-1068)GTA>ATA	p.V356I	KIAA1804_uc001hvs.1_Missense_Mutation_p.V356I	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	356	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GGCTTATGGGGTAGCAGTCAA	0.517													15	95					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233489663	233489663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:233489663C>T	uc001hvt.3	+	3	1358	c.1097C>T	c.(1096-1098)CCA>CTA	p.P366L	KIAA1804_uc001hvs.1_Missense_Mutation_p.P366L	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	366	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TTGCCCATTCCATCCACCTGC	0.502													28	76					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518193	233518193	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:233518193C>T	uc001hvt.3	+	10	3108	c.2847C>T	c.(2845-2847)TCC>TCT	p.S949S	KIAA1804_uc001hvu.3_Silent_p.S395S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	949					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GCCCTGCCTCCCTGAGAAGCC	0.612													27	66					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233802629	233802629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:233802629C>T	uc010pxo.1	+	2	812	c.644C>T	c.(643-645)TCC>TTC	p.S215F	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	215						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TTCCTGGAATCCTTTTATTTT	0.488													34	52					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234444858	234444858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:234444858G>A	uc001hwa.1	+	3	641	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	SLC35F3_uc001hvy.1_Missense_Mutation_p.R207Q	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	138					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GAATGCTGTCGATTTTTTGGA	0.383													12	87					0	0	1	0	0
TARBP1	6894	broad.mit.edu	37	1	234565060	234565060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:234565060G>A	uc001hwd.2	-	17	2882	c.2882C>T	c.(2881-2883)TCC>TTC	p.S961F		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	961					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			TGATTCAGAGGAAGTCAGAAG	0.338													6	77					0	0	1	0	0
HEATR1	55127	broad.mit.edu	37	1	236740197	236740197	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:236740197C>T	uc001hyd.1	-	21	2933	c.2808G>A	c.(2806-2808)AGG>AGA	p.R936R	HEATR1_uc009xgh.1_Silent_p.R179R	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	936					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			GAATGGCAGCCCTACGAACTT	0.388													67	68					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236902628	236902629	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:236902628_236902629CC>TT	uc001hyf.2	+	10	1107_1108	c.903_904CC>TT	c.(901-906)ATCCCC>ATTTCC	p.P302S	ACTN2_uc001hyg.2_Missense_Mutation_p.P94S|ACTN2_uc009xgi.1_Missense_Mutation_p.P302S|ACTN2_uc010pxu.1_Intron|ACTN2_uc001hyh.2_5'UTR	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	302	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GTCGCACGATCCCCTGGCTGGA	0.535													43	79					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237919623	237919623	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:237919623G>A	uc001hyl.1	+	81	11301	c.11181G>A	c.(11179-11181)CAG>CAA	p.Q3727Q	RYR2_uc010pya.1_Silent_p.Q142Q	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3727					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTCTATACCAGCAAGCCCGAC	0.468													52	27					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237947165	237947165	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:237947165G>A	uc001hyl.1	+	90	12273	c.12153G>A	c.(12151-12153)GCG>GCA	p.A4051A	RYR2_uc010pya.1_Silent_p.A466A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4051	EF-hand.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCCACAAAGCGATGGAGAGCC	0.443													24	19					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071960	240071960	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:240071960G>A	uc001hyp.2	+	5	1988	c.1209G>A	c.(1207-1209)AGG>AGA	p.R403R		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	403	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	ACTTGGAGAGGAAAGCCGACA	0.572													9	12					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240256759	240256759	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:240256759C>T	uc010pyd.1	+	1	1575	c.1350C>T	c.(1348-1350)TCC>TCT	p.S450S	FMN2_uc010pye.1_Silent_p.S450S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	450					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CGGAACCCTCCCTGAGCCGAG	0.697													16	132					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240286514	240286514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:240286514G>A	uc010pyd.1	+	2	1876	c.1651G>A	c.(1651-1653)GAG>AAG	p.E551K	FMN2_uc010pye.1_Missense_Mutation_p.E551K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	551					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAGCCAGCAGGAGAACGGGCC	0.532													20	144					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240286571	240286571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:240286571C>T	uc010pyd.1	+	2	1933	c.1708C>T	c.(1708-1710)CTT>TTT	p.L570F	FMN2_uc010pye.1_Missense_Mutation_p.L570F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	570					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGCCATGGGTCTTCTCCTTCC	0.502													15	155					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241099956	241099956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:241099956G>A	uc001hyv.2	-	5	607	c.277C>T	c.(277-279)CCA>TCA	p.P93S	RGS7_uc010pyh.1_Missense_Mutation_p.P67S|RGS7_uc010pyj.1_Missense_Mutation_p.P9S|RGS7_uc001hyu.2_Missense_Mutation_p.P93S|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.P93S	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	93	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTGAGATTGGAAAGAAGTAG	0.383													26	116					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358													9	75					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245850988	245850988	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:245850988C>G	uc001ibf.1	+	12	5143	c.4703C>G	c.(4702-4704)TCG>TGG	p.S1568W	KIF26B_uc001ibg.1_Missense_Mutation_p.S1186W|KIF26B_uc001ibh.1_Missense_Mutation_p.S810W	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1568					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GGTGCAGCCTCGGGCACCCCG	0.672													5	15					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587637	247587637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247587637C>T	uc001icr.2	+	5	1030	c.892C>T	c.(892-894)CTC>TTC	p.L298F	NLRP3_uc001ics.2_Missense_Mutation_p.L298F|NLRP3_uc001icu.2_Missense_Mutation_p.L298F|NLRP3_uc001icw.2_Missense_Mutation_p.L298F|NLRP3_uc001icv.2_Missense_Mutation_p.L298F|NLRP3_uc010pyw.1_Missense_Mutation_p.L296F|NLRP3_uc001ict.1_Missense_Mutation_p.L296F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	298	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTCCAGAATCCTCTTCCTCAT	0.582													20	102					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247597430	247597430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247597430G>A	uc001icr.2	+	7	2491	c.2353G>A	c.(2353-2355)GAG>AAG	p.E785K	NLRP3_uc001ics.2_Missense_Mutation_p.E785K|NLRP3_uc001icu.2_Missense_Mutation_p.E785K|NLRP3_uc001icw.2_Missense_Mutation_p.E728K|NLRP3_uc001icv.2_Missense_Mutation_p.E728K|NLRP3_uc010pyw.1_Intron	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	785	LRR 2.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCTCTCGCATGAGTGCTGCTT	0.557													93	60					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247599340	247599340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247599340C>T	uc001icr.2	+	8	2705	c.2567C>T	c.(2566-2568)TCC>TTC	p.S856F	NLRP3_uc001ics.2_Intron|NLRP3_uc001icu.2_Missense_Mutation_p.S856F|NLRP3_uc001icw.2_Missense_Mutation_p.S799F|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Missense_Mutation_p.S834F	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	856	LRR 5.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACCAGCCATTCCCTGACCAGA	0.483													27	78					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614805	247614805	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247614805G>A	uc010pyx.1	-	1	480	c.480C>T	c.(478-480)TCC>TCT	p.S160S		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CCTGCACGAAGGAGTTGCCGA	0.602													11	41					0	0	1	0	0
OR2W5	441932	broad.mit.edu	37	1	247655350	247655350	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247655350G>A	uc001icz.1	+	1	921	c.921G>A	c.(919-921)GTG>GTA	p.V307V		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	307					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CTTCTGGGGTGGGAGAAAGGG	0.502													18	102					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247836279	247836279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247836279C>T	uc001idi.1	-	1	65	c.65G>A	c.(64-66)GGA>GAA	p.G22E		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GAAGATAATTCCCTGGAGTTC	0.428													28	30					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921025	247921025	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247921025G>A	uc010pza.1	-	1	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GAGTAGAGGTGATCTTCAGAA	0.493													36	24					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921291	247921291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247921291G>A	uc010pza.1	-	1	418	c.418C>T	c.(418-420)CTT>TTT	p.L140F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TGGACACAAAGGCACAGGTTC	0.493													15	70					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921673	247921673	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247921673G>A	uc010pza.1	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CCAGAAGGACGAATTCCCTGA	0.408													18	15					0	0	1	0	0
OR14A16	284532	broad.mit.edu	37	1	247978233	247978233	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:247978233A>G	uc001idm.1	-	1	799	c.799T>C	c.(799-801)TTG>CTG	p.L267L		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAGCATCCAAAATAGAAGGA	0.418													9	30					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084466	248084466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248084466G>A	uc010pzc.1	+	1	147	c.147G>A	c.(145-147)TGG>TGA	p.W49*		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGATTCACTGGGACCACCGGC	0.527													49	56					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084478	248084478	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248084478C>T	uc010pzc.1	+	1	159	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACCACCGGCTCCACACGCCCA	0.532													41	92					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112192	248112192	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248112192C>T	uc001idt.1	+	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CAACTGATTTCATCTTATTGG	0.343													74	45					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112339	248112339	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248112339C>T	uc001idt.1	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CCATGTATTTCCTACTGAGTC	0.413													61	367					0	0	1	0	0
OR2AK2	391191	broad.mit.edu	37	1	248128867	248128867	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248128867C>T	uc010pzd.1	+	1	234	c.234C>T	c.(232-234)CTC>CTT	p.L78L	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ACTTTCTGCTCAGTCAGCTCT	0.478													94	75					0	0	1	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129311	248129311	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248129311C>T	uc010pzd.1	+	1	678	c.678C>T	c.(676-678)TTC>TTT	p.F226F	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TACTACCATTCCTAGCCATTC	0.468													13	24					0	0	1	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153976	248153976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248153976G>A	uc001idv.1	+	1	408	c.164G>A	c.(163-165)AGA>AAA	p.R55K	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						ATCCGTATGAGAAAAAGAGTG	0.463													24	57					0	0	1	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285925	248285925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248285925G>A	uc001idy.1	+	1	488	c.488G>A	c.(487-489)GGA>GAA	p.G163E		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						ATGGGATCTGGAGAGGGTCGT	0.448													47	233					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343914	248343914	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248343914C>T	uc010pzf.1	+	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGCTTGTTTTCCCTGTTGCAA	0.418													34	192					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343979	248343979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248343979G>A	uc010pzf.1	+	1	692	c.692G>A	c.(691-693)GGA>GAA	p.G231E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATGGGATCTGGAGAGGGTCGT	0.453													90	40					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248344280	248344280	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248344280C>T	uc010pzf.1	+	1	993	c.993C>T	c.(991-993)TCC>TCT	p.S331S		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	331	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TTCTAATATCCATCTTTTTCT	0.313													72	79					0	0	1	0	0
OR2M4	26245	broad.mit.edu	37	1	248402747	248402747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248402747G>A	uc010pzh.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CAGCTCTCTGGAAATTCATCA	0.433													22	132					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436726	248436726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248436726G>A	uc010pzi.1	-	1	391	c.391C>T	c.(391-393)CCC>TCC	p.P131S		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATGAGAGTGGGATATCGGAGT	0.592													12	171					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436958	248436958	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248436958G>A	uc010pzi.1	-	1	159	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGGCGTGTGGAGCCGGTGGT	0.527													6	143					0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248436970	248436970	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248436970C>T	uc010pzi.1	-	1	147	c.147G>A	c.(145-147)TGG>TGA	p.W49*		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCCGGTGGTCCCAGTGAATCA	0.522													11	107					0	0	1	0	0
OR14C36	127066	broad.mit.edu	37	1	248512786	248512786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248512786C>T	uc010pzl.1	+	1	710	c.710C>T	c.(709-711)TCC>TTC	p.S237F		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AAGGCCTTTTCCACCTGCATC	0.522													15	89					0	0	1	0	0
OR2T6	254879	broad.mit.edu	37	1	248551191	248551191	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248551191C>T	uc001iei.1	+	1	282	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCATCTCTTTCATCGCCTGCA	0.532													49	44					0	0	1	0	0
OR2T6	254879	broad.mit.edu	37	1	248551788	248551788	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248551788G>A	uc001iei.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACAGTCTGAGGAACAGGGATG	0.458													37	35					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248570147	248570147	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248570147G>A	uc010pzm.1	+	1	852	c.852G>A	c.(850-852)AGG>AGA	p.R284R		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	284	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGAGGGCAGGAAGAAGGCAT	0.507													10	88					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616751	248616751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248616751C>T	uc001iek.1	+	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCTCTGTCTCCTACACGCAC	0.532													18	90					0	0	1	0	0
OR2T34	127068	broad.mit.edu	37	1	248737626	248737626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248737626C>T	uc001iep.1	-	1	433	c.433G>A	c.(433-435)GTG>ATG	p.V145M		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGCTGGCACACCCTCTGGTTC	0.547													18	41					0	0	1	0	0
OR2T34	127068	broad.mit.edu	37	1	248737718	248737718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:248737718C>T	uc001iep.1	-	1	341	c.341G>A	c.(340-342)GGA>GAA	p.G114E		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AACCTCAGCTCCAGCCAGGGT	0.562													33	59					0	0	1	0	0
PGBD2	267002	broad.mit.edu	37	1	249211569	249211569	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:249211569G>A	uc001ifh.2	+	3	933	c.786G>A	c.(784-786)TTG>TTA	p.L262L	PGBD2_uc001ifg.2_Silent_p.L11L|PGBD2_uc009xhd.2_Silent_p.L259L	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	262										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			ATGCACCCTTGGAAGAGTTCT	0.502													96	43					0	0	1	0	0
LARP4B	23185	broad.mit.edu	37	10	875404	875404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:875404G>A	uc001ifs.1	-	10	1087	c.1046C>T	c.(1045-1047)CCC>CTC	p.P349L		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	349							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CTGCTGCTGGGGGCTGTACAT	0.542													30	38					0	0	1	0	0
WDR37	22884	broad.mit.edu	37	10	1175199	1175199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:1175199C>T	uc001igf.1	+	14	1573	c.1400C>T	c.(1399-1401)CCC>CTC	p.P467L	WDR37_uc009xhm.1_Missense_Mutation_p.P468L|WDR37_uc009xhn.1_RNA|WDR37_uc001igg.1_RNA	NM_014023	NP_054742	Q9Y2I8	WDR37_HUMAN	WD repeat domain 37	467	WD 7.										0		all_epithelial(10;0.0449)|Colorectal(49;0.142)		Epithelial(11;0.134)		GAAGACCACCCCGTGTGCAAT	0.483													31	34					0	0	1	0	0
AKR1C4	1109	broad.mit.edu	37	10	5255069	5255069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:5255069G>A	uc001ihw.2	+	7	826	c.793G>A	c.(793-795)GTT>ATT	p.V265I		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	265	NADP.				androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	GCAGCGTGGGGTTGTGGTCCT	0.557													31	42					0	0	1	0	0
NET1	10276	broad.mit.edu	37	10	5494464	5494464	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:5494464C>A	uc001iia.2	+	5	645	c.507C>A	c.(505-507)ACC>ACA	p.T169T	NET1_uc010qar.1_5'UTR|NET1_uc001iib.2_Silent_p.T115T|NET1_uc010qas.1_5'UTR	NM_001047160	NP_001040625	Q7Z628	ARHG8_HUMAN	neuroepithelial cell transforming gene 1 isoform	169					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell growth|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	Rho guanyl-nucleotide exchange factor activity			breast(1)	1						AGTCTCTCACCACCAGGGAGA	0.488													24	28					1.04121e-07	1.04629e-07	1	1	0
CALML5	51806	broad.mit.edu	37	10	5541215	5541215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:5541215C>T	uc001iic.2	-	1	319	c.187G>A	c.(187-189)GAA>AAA	p.E63K		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	63	EF-hand 2.|2 (Potential).				epidermis development|signal transduction		calcium ion binding|protein binding				0						AAGCTGATTTCGCCGTCGCCG	0.672													39	38					0	0	1	0	0
C10orf18	54906	broad.mit.edu	37	10	5773086	5773086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:5773086C>T	uc001iij.2	+	11	1749	c.1124C>T	c.(1123-1125)GCT>GTT	p.A375V	C10orf18_uc001iik.2_Intron	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	375										ovary(1)|central_nervous_system(1)	2						AAAAGAACTGCTTCCAGAGCA	0.463													26	69					0	0	1	0	0
IL2RA	3559	broad.mit.edu	37	10	6063460	6063460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:6063460C>T	uc001iiz.1	-	4	723	c.564G>A	c.(562-564)ATG>ATA	p.M188I	IL2RA_uc009xih.1_Intron|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	188	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GACTGGTCTCCATTTCACCTG	0.453													43	116					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553128	6553128	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:6553128C>T	uc001ijj.1	-	3	222	c.147G>A	c.(145-147)AAG>AAA	p.K49K	PRKCQ_uc009xim.1_Silent_p.K49K|PRKCQ_uc001iji.1_Silent_p.K82K|PRKCQ_uc009xin.1_Silent_p.K13K|PRKCQ_uc010qax.1_5'UTR	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	49	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						ACATGGTAGGCTTTTTCTGGA	0.448													51	70					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7618858	7618858	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:7618858G>A	uc001ijq.2	-	10	1615	c.1536C>T	c.(1534-1536)ATC>ATT	p.I512I	ITIH5_uc001ijp.2_Silent_p.I298I|ITIH5_uc001ijr.1_Silent_p.I512I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	512					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CCGCAATGATGATCTCCGAGC	0.567													28	86					0	0	1	0	0
ITIH2	3698	broad.mit.edu	37	10	7749185	7749185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:7749185G>A	uc001ijs.2	+	3	343	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	61	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						AGGAGAATCGGAAGAAATGAT	0.368													25	42					0	0	1	0	0
KIN	22944	broad.mit.edu	37	10	7829871	7829871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:7829871G>A	uc001ijt.2	-	1	74	c.26C>T	c.(25-27)CCC>CTC	p.P9L	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.P9L|KIN_uc010qba.1_5'UTR|ATP5C1_uc010qbb.1_5'Flank|ATP5C1_uc009xiq.1_5'Flank|ATP5C1_uc010qbc.1_5'Flank|ATP5C1_uc001iju.2_5'Flank|ATP5C1_uc001ijv.2_5'Flank	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	9					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GATAGCCTTGGGAGTAAGAAA	0.612													54	76					0	0	1	0	0
TAF3	83860	broad.mit.edu	37	10	8051106	8051106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:8051106C>T	uc010qbd.1	+	5	2381	c.2381C>T	c.(2380-2382)ACC>ATC	p.T794I		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	794	Pro-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						AGGCCGAAGAccccaccgccg	0.279													34	53					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8100445	8100445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:8100445C>T	uc001ika.2	+	3	976	c.419C>T	c.(418-420)TCC>TTC	p.S140F	GATA3_uc001ijz.2_Missense_Mutation_p.S140F	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	140	Poly-Ser.				aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						TCGTCCTCCTCCTTGTCGGGG	0.721			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						24	67					0	0	1	0	0
UCMA	221044	broad.mit.edu	37	10	13271644	13271644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:13271644C>T	uc001imd.2	-	4	359	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_145314	NP_660357	Q8WVF2	UCMA_HUMAN	upper zone of growth plate and cartilage matrix	96	Potential.					proteinaceous extracellular matrix					0						TTCTCAAATTCATTCCTTTGT	0.468													42	64					0	0	1	0	0
FAM107B	83641	broad.mit.edu	37	10	14709678	14709678	+	Nonsense_Mutation	SNP	G	A	A	rs111681891		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:14709678G>A	uc001ina.1	-	2	658	c.424C>T	c.(424-426)CGA>TGA	p.R142*	FAM107B_uc010qbu.1_RNA	NM_031453	NP_113641	Q9H098	F107B_HUMAN	hypothetical protein LOC83641	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										breast(4)	4						GGTTCTTCTCGAAATTCTTCT	0.423													15	47					0	0	1	0	0
HSPA14	51182	broad.mit.edu	37	10	14894443	14894443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:14894443G>A	uc001inf.2	+	8	788	c.647G>A	c.(646-648)CGG>CAG	p.R216Q		NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	216					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						GGAATATATCGGGTTCTTTCA	0.383													49	120					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15115175	15115175	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:15115175A>T	uc001inu.2	+	8	999	c.745A>T	c.(745-747)ATC>TTC	p.I249F	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.I302F	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	249					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						CGAGAAATTAATCAAGAACTA	0.328													15	40					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15730014	15730014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:15730014C>T	uc001ioc.1	-	3	367	c.367G>A	c.(367-369)GGA>AGA	p.G123R	ITGA8_uc010qcb.1_Missense_Mutation_p.G123R	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	123	Extracellular (Potential).|FG-GAP 2.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TCTTTGGTTCCATTAACTCTG	0.368													34	109					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20357123	20357123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:20357123C>T	uc001iqg.1	+	4	1133	c.496C>T	c.(496-498)CCA>TCA	p.P166S	PLXDC2_uc001iqh.1_Missense_Mutation_p.P117S	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	166	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CTTCGATTTTCCATTTTATGG	0.393													9	39					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21102879	21102879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:21102879G>A	uc001iqi.2	-	23	2732	c.2335C>T	c.(2335-2337)CAT>TAT	p.H779Y	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	779	Nebulin 22.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATTGAAATATGATTTTGTGCT	0.388													16	52					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21106608	21106608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:21106608C>T	uc001iqi.2	-	21	2466	c.2069G>A	c.(2068-2070)GGA>GAA	p.G690E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	690	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTGAAGTTCTCCCTTATATTT	0.388													17	94					0	0	1	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22830831	22830831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:22830831G>A	uc001irl.3	-	8	1186	c.938C>T	c.(937-939)CCC>CTC	p.P313L	PIP4K2A_uc010qcu.1_Missense_Mutation_p.P173L	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	313	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						GCTATCTGGGGGGGTTCCCAC	0.582													52	54					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23295898	23295898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:23295898G>A	uc001irm.3	+	14	1900	c.1817G>A	c.(1816-1818)AGT>AAT	p.S606N	ARMC3_uc010qcv.1_Missense_Mutation_p.S606N|ARMC3_uc010qcw.1_Missense_Mutation_p.S343N	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	606							binding				0						TTAATCAACAGTAAATCTTAC	0.438													29	109					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24508743	24508743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:24508743G>A	uc001iru.3	+	2	662	c.259G>A	c.(259-261)GAT>AAT	p.D87N	KIAA1217_uc001irs.2_Missense_Mutation_p.D7N|KIAA1217_uc001irt.3_Missense_Mutation_p.D87N|KIAA1217_uc010qcy.1_Missense_Mutation_p.D87N|KIAA1217_uc010qcz.1_Missense_Mutation_p.D87N	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	87					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ATCTGAGATGGATCGGAAGAG	0.527													48	57					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24722115	24722115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:24722115G>A	uc001iru.3	+	4	1148	c.745G>A	c.(745-747)GAT>AAT	p.D249N	KIAA1217_uc001irs.2_Missense_Mutation_p.D169N|KIAA1217_uc001irt.3_Missense_Mutation_p.D249N|KIAA1217_uc010qcy.1_Missense_Mutation_p.D249N|KIAA1217_uc010qcz.1_Missense_Mutation_p.D249N|KIAA1217_uc001irv.1_Missense_Mutation_p.D99N|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	249					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TGAATTAAATGATGTAAGGTA	0.358													9	34					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762307	24762308	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:24762307_24762308GG>AA	uc001iru.3	+	6	1400_1401	c.997_998GG>AA	c.(997-999)GGG>AAG	p.G333K	KIAA1217_uc001irs.2_Missense_Mutation_p.G253K|KIAA1217_uc001irt.3_Missense_Mutation_p.G333K|KIAA1217_uc010qcy.1_Missense_Mutation_p.G333K|KIAA1217_uc010qcz.1_Missense_Mutation_p.G333K|KIAA1217_uc001irv.1_Missense_Mutation_p.G183K|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G51K|KIAA1217_uc001irz.2_Missense_Mutation_p.G51K|KIAA1217_uc001irx.2_Missense_Mutation_p.G51K|KIAA1217_uc001iry.2_Missense_Mutation_p.G51K	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	333	Pro-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AATTCCTTATGGGGGCACCCGC	0.609													13	55					0	0	1	0	0
ENKUR	219670	broad.mit.edu	37	10	25279499	25279499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:25279499C>T	uc001isg.1	-	4	652	c.487G>A	c.(487-489)GAG>AAG	p.E163K	ENKUR_uc001ish.1_Missense_Mutation_p.E101K	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	163						cilium|flagellum	calmodulin binding|SH3 domain binding				0						TTTATTTCCTCGTTTCGCTTA	0.363													14	61					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26432477	26432477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26432477C>T	uc001isn.2	+	21	2723	c.2363C>T	c.(2362-2364)TCC>TTC	p.S788F	MYO3A_uc009xko.1_Missense_Mutation_p.S788F|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	788	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GGTTTACTTTCCCTACTTGAT	0.398													13	46					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26455093	26455093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26455093C>T	uc001isn.2	+	27	3457	c.3097C>T	c.(3097-3099)CTT>TTT	p.L1033F	MYO3A_uc009xko.1_Missense_Mutation_p.L1033F|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1033	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TAACTGGGCTCTTGGAAAAAC	0.398													41	162					0	0	1	0	0
GAD2	2572	broad.mit.edu	37	10	26589851	26589851	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26589851C>T	uc001isp.2	+	16	2222	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F	GAD2_uc001isq.2_Silent_p.F573F	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	573					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	ACATTGACTTCCTGATTGAAG	0.438													36	99					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26789788	26789788	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26789788C>T	uc001iss.2	+	5	522	c.201C>T	c.(199-201)CTC>CTT	p.L67L	APBB1IP_uc001isr.2_Silent_p.L67L|APBB1IP_uc009xks.1_Silent_p.L67L	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	67					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TAGATGCTCTCATGGCAGATC	0.413													13	62					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26790013	26790013	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26790013A>G	uc001iss.2	+	5	747	c.426A>G	c.(424-426)CCA>CCG	p.P142P	APBB1IP_uc001isr.2_Silent_p.P142P|APBB1IP_uc009xks.1_Silent_p.P142P	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	142	Pro-rich.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						TTCCACTGCCACCACCACCTC	0.502													70	77					0	0	1	0	0
C10orf50	645528	broad.mit.edu	37	10	26880239	26880239	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:26880239G>A	uc001ist.2	+	2		c.474G>A				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						TCCCTCTCAGGACCTATAAAA	0.423													14	21					0	0	1	0	0
LOC387646	387646	broad.mit.edu	37	10	27538822	27538822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:27538822G>A	uc001its.2	-	1	2414	c.571C>T	c.(571-573)CCT>TCT	p.P191S		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						ACTACATTAGGGAGCTCTGGA	0.527													88	106					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702272	27702272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:27702272C>T	uc001itu.2	-	1	1026	c.908G>A	c.(907-909)GGA>GAA	p.G303E		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	303	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAAGATGTATCCTCCGAAGAA	0.597													22	118					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702450	27702450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:27702450C>T	uc001itu.2	-	1	848	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	244					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CTTCCCTTTTCCCGCGCCACG	0.622													28	26					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702577	27702577	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:27702577C>T	uc001itu.2	-	1	721	c.603G>A	c.(601-603)AGG>AGA	p.R201R		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	201					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CGGTGCTCCTCCTGGAGGCGG	0.617													69	64					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28196706	28196706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:28196706C>T	uc009xky.2	-	17	2594	c.2496G>A	c.(2494-2496)ATG>ATA	p.M832I	ARMC4_uc010qds.1_Missense_Mutation_p.M357I|ARMC4_uc010qdt.1_Missense_Mutation_p.M524I|ARMC4_uc001itz.2_Missense_Mutation_p.M832I	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	832	ARM 6.						binding			ovary(4)|skin(2)	6						GATCAATTATCCTATCGTGGA	0.398													28	38					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273157	28273157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:28273157C>T	uc009xky.2	-	5	736	c.638G>A	c.(637-639)GGA>GAA	p.G213E	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.G213E|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	213							binding			ovary(4)|skin(2)	6						GTTTCCTTTTCCTGAGAAACG	0.308													62	77					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28491141	28491141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:28491141C>T	uc001iua.1	-	5	501	c.97G>A	c.(97-99)GAA>AAA	p.E33K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E33K|MPP7_uc009xla.2_Missense_Mutation_p.E33K|MPP7_uc010qdv.1_Intron	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	33	L27 1.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						GTCAGGTCTTCCTGGCTATCC	0.433													14	51					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	30998303	30998303	+	Silent	SNP	C	T	T	rs113012238	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:30998303C>T	uc010qdx.1	+	8	1391	c.849C>T	c.(847-849)TTC>TTT	p.F283F						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		CCACGGAGTTCGTGTACCCTG	0.587													36	40					0	0	1	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32101679	32101679	+	Missense_Mutation	SNP	C	T	T	rs146011999	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:32101679C>T	uc001ivz.1	-	15	2177	c.1907G>A	c.(1906-1908)CGA>CAA	p.R636Q	ARHGAP12_uc001ivy.1_Missense_Mutation_p.R582Q|ARHGAP12_uc009xls.2_Missense_Mutation_p.R587Q|ARHGAP12_uc001iwb.1_Missense_Mutation_p.R629Q|ARHGAP12_uc001iwc.1_Missense_Mutation_p.R604Q|ARHGAP12_uc009xlq.1_Missense_Mutation_p.R557Q|ARHGAP12_uc001iwd.1_Missense_Mutation_p.R604Q	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	636					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				AGTGGGGCGTCGTGTAAGAAA	0.338													14	63					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33510724	33510724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:33510724C>T	uc001iwx.3	-	8	1728	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q	NRP1_uc001iwv.3_Missense_Mutation_p.R402Q|NRP1_uc009xlz.2_Missense_Mutation_p.R402Q|NRP1_uc001iww.3_Missense_Mutation_p.R221Q|NRP1_uc001iwy.3_Missense_Mutation_p.R402Q|NRP1_uc001iwz.2_Missense_Mutation_p.R402Q|NRP1_uc001ixa.2_Missense_Mutation_p.R402Q|NRP1_uc001ixb.1_Missense_Mutation_p.R402Q|NRP1_uc001ixc.1_Missense_Mutation_p.R402Q	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	402	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TCGGACAAATCGAGTTATCAG	0.433													63	53					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37422872	37422872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37422872G>A	uc001iza.1	+	5	577	c.478G>A	c.(478-480)GGA>AGA	p.G160R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	216	ANK 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TGTATGTCATGGATCATCAGA	0.378													32	135					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37438752	37438752	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37438752G>A	uc001iza.1	+	11	1551	c.1452G>A	c.(1450-1452)TTG>TTA	p.L484L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	540						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCTTTGAATTGAAGAATGAAC	0.313													31	46					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490223	37490223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37490223G>A	uc001iza.1	+	31	2770	c.2671G>A	c.(2671-2673)GAA>AAA	p.E891K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	947						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACATCAAAAAGAAATGGATAA	0.318													16	68					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37507929	37507929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37507929G>A	uc001iza.1	+	34	3220	c.3121G>A	c.(3121-3123)GAA>AAA	p.E1041K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1097	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCATGAAAATGAAAATTATCT	0.313													11	16					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508136	37508136	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37508136G>T	uc001iza.1	+	34	3427	c.3328G>T	c.(3328-3330)GGG>TGG	p.G1110W		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1166	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCAATATAGTGGGCAGCTTAA	0.348													44	141					1.02687e-29	1.04144e-29	1	1	0
ANKRD30A	91074	broad.mit.edu	37	10	37508414	37508414	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:37508414G>A	uc001iza.1	+	34	3705	c.3606G>A	c.(3604-3606)AGG>AGA	p.R1202R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1258						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGCTCAAAGGAAATCCAAAA	0.368													10	27					0	0	1	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43016150	43016150	+	RNA	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:43016150A>G	uc001jab.3	-	5		c.3050T>C			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						GAATGGGTAAACATTCTGATG	0.343													7	19					0	0	1	0	0
ZNF33B	7582	broad.mit.edu	37	10	43127859	43127859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:43127859G>A	uc001jaf.1	-	3	153	c.38C>T	c.(37-39)TCA>TTA	p.S13L	ZNF33B_uc009xmg.1_Missense_Mutation_p.S13L|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_5'UTR	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	13	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATCTTTAAATGATACTGACCC	0.453													8	36					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43606806	43606806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:43606806C>T	uc001jal.2	+	7	1605	c.1415C>T	c.(1414-1416)GCC>GTC	p.A472V	RET_uc001jak.1_Missense_Mutation_p.A472V|RET_uc010qez.1_Missense_Mutation_p.A218V	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	472	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GACACCAAGGCCCTGCGGCGG	0.612		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				17	77					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43610101	43610101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:43610101G>A	uc001jal.2	+	11	2243	c.2053G>A	c.(2053-2055)GTC>ATC	p.V685I	RET_uc001jak.1_Missense_Mutation_p.V685I|RET_uc010qez.1_Missense_Mutation_p.V431I	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	685	Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GGCCTTCCCGGTCAGCTACTC	0.637		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				16	53					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052675	44052675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:44052675G>A	uc001jaw.3	-	2	1506	c.853C>T	c.(853-855)CAT>TAT	p.H285Y	ZNF239_uc001jax.3_Missense_Mutation_p.H285Y|ZNF239_uc009xmj.2_Missense_Mutation_p.H285Y|ZNF239_uc009xmk.2_Missense_Mutation_p.H285Y	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	285	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TCGCCTGTATGGACGGCATGA	0.502													44	128					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44053046	44053046	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:44053046T>A	uc001jaw.3	-	2	1135	c.482A>T	c.(481-483)AAA>ATA	p.K161I	ZNF239_uc001jax.3_Missense_Mutation_p.K161I|ZNF239_uc009xmj.2_Missense_Mutation_p.K161I|ZNF239_uc009xmk.2_Missense_Mutation_p.K161I	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CACCTGTGATTTCCATCCATG	0.448													68	62					0	0	1	0	0
TMEM72	643236	broad.mit.edu	37	10	45430455	45430456	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:45430455_45430456CC>TT	uc001jbn.2	+	5	898_899	c.701_702CC>TT	c.(700-702)TCC>TTT	p.S234F	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_Missense_Mutation_p.S116F	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	234						integral to membrane					0						ATAGTCCCCTCCCTCGCCGAAG	0.609													23	80					0	0	1	0	0
FAM21C	253725	broad.mit.edu	37	10	46281030	46281030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:46281030C>T	uc001jcu.2	+	26	2861	c.2762C>T	c.(2761-2763)TCC>TTC	p.S921F	FAM21C_uc001jct.2_Missense_Mutation_p.S919F|FAM21C_uc010qfi.1_Missense_Mutation_p.S846F|FAM21C_uc010qfj.1_Missense_Mutation_p.S111F|FAM21C_uc010qfk.1_Intron|FAM21C_uc001jcw.2_5'Flank	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	hypothetical protein LOC253725	921										ovary(1)	1						CATCCTGAATCCATTCAAGGT	0.363													23	54					0	0	1	0	0
SYT15	83849	broad.mit.edu	37	10	46967529	46967529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:46967529G>A	uc001jea.2	-	4	701	c.548C>T	c.(547-549)CCC>CTC	p.P183L	SYT15_uc001jdz.2_Missense_Mutation_p.P183L|SYT15_uc001jeb.2_Missense_Mutation_p.P61L|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	183	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						CTTCACCAGGGGGCTGCAGGT	0.597													10	59					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999402	46999402	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:46999402G>A	uc001jec.2	+	3	657	c.522G>A	c.(520-522)AGG>AGA	p.R174R	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	174											0						GCCTGGAAAGGGACCTGGCTC	0.632													7	45					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999883	46999883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:46999883G>A	uc001jec.2	+	3	1138	c.1003G>A	c.(1003-1005)GCT>ACT	p.A335T	GPRIN2_uc010qfq.1_Missense_Mutation_p.A98T	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	335											0						AGCCCAGGATGCTGGTGTGCA	0.632													24	61					0	0	1	0	0
FAM35B2	439965	broad.mit.edu	37	10	47409895	47409895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:47409895C>T	uc010qga.1	+	4	466	c.137C>T	c.(136-138)CCT>CTT	p.P46L	FAM35B2_uc010qfz.1_RNA					SubName: Full=cDNA FLJ59018, highly similar to Protein FAM35A;												0						CTGGCATTTCCTCTTACAGCA	0.343													4	12					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48370815	48370815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48370815G>A	uc001jex.2	+	2	445	c.283G>A	c.(283-285)GGA>AGA	p.G95R	ZNF488_uc001jey.2_Intron	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GAAGACACGTGGAGAGCAGAG	0.687													6	20					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48371337	48371337	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48371337C>T	uc001jex.2	+	2	967	c.805C>T	c.(805-807)CTG>TTG	p.L269L	ZNF488_uc001jey.2_Silent_p.L162L	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	269					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCTCACCTCCCTGGGCTTGTC	0.607													19	41					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48382100	48382100	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48382100C>T	uc001jez.2	-	4	3663	c.3549G>A	c.(3547-3549)GTG>GTA	p.V1183V		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1183	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TGGTGTCATCCACGTGGTAGG	0.642													16	48					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48389276	48389276	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48389276T>C	uc001jez.2	-	1	1716	c.1602A>G	c.(1600-1602)CAA>CAG	p.Q534Q		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	534	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACACCCCACGTTGGGTGCTGT	0.652													13	33					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48389863	48389863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48389863C>T	uc001jez.2	-	1	1129	c.1015G>A	c.(1015-1017)GAC>AAC	p.D339N		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	339	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GTGTAGTAGTCCTTCAGGACC	0.642													17	31					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416652	48416652	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:48416652G>A	uc001jfa.1	-	1	205	c.42C>T	c.(40-42)TCC>TCT	p.S14S		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	14					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CAGCCAGCAGGGACAGCAGGG	0.687													3	6					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49459654	49459654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:49459654G>A	uc001jgi.2	-	2	213	c.106C>T	c.(106-108)CTC>TTC	p.L36F	FRMPD2_uc001jgh.2_Missense_Mutation_p.L27F|FRMPD2_uc001jgj.2_Missense_Mutation_p.L36F	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	36	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGGAACAGGAGGGACCAGATT	0.562													13	39					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50256622	50256622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:50256622C>T	uc001jhf.2	-	6	705	c.676G>A	c.(676-678)GAG>AAG	p.E226K		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	226	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						GTGACAGTCTCCCCTGAGCTG	0.483													7	28					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531107	50531107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:50531107C>T	uc010qgp.1	+	3	856	c.517C>T	c.(517-519)CCT>TCT	p.P173S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	173											0						TCTGAAAAATCCTCCCAAATT	0.502													7	27					0	0	1	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819730	50819730	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:50819730G>A	uc001jhw.2	+	1	1384	c.944G>A	c.(943-945)TGG>TAG	p.W315*	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	315	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						ATTGCCACGTGGATGAAGCAT	0.637													17	62					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50954001	50954001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:50954001C>T	uc001jie.2	-	11	1461	c.1319G>A	c.(1318-1320)CGA>CAA	p.R440Q	OGDHL_uc009xog.2_Missense_Mutation_p.R467Q|OGDHL_uc010qgt.1_Missense_Mutation_p.R383Q|OGDHL_uc010qgu.1_Missense_Mutation_p.R231Q|OGDHL_uc009xoh.2_Missense_Mutation_p.R231Q	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	440					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GCGGGCCATTCGGGGGTCTGT	0.557													17	42					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50957825	50957825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:50957825C>T	uc001jie.2	-	8	1076	c.934G>A	c.(934-936)GAC>AAC	p.D312N	OGDHL_uc009xog.2_Missense_Mutation_p.D339N|OGDHL_uc010qgt.1_Missense_Mutation_p.D255N|OGDHL_uc010qgu.1_Missense_Mutation_p.D103N|OGDHL_uc009xoh.2_Missense_Mutation_p.D103N	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	312					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TGCTCCAGGTCCTTGCGGATC	0.667													3	7					0	0	1	0	0
AGAP7	653268	broad.mit.edu	37	10	51464851	51464851	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:51464851G>A	uc001jio.2	-	7	1731	c.1605C>T	c.(1603-1605)TCC>TCT	p.S535S	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	535	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTTCCCTCGTGGACTTTTCTG	0.552													82	43					0	0	1	0	0
AGAP7	653268	broad.mit.edu	37	10	51465496	51465496	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:51465496C>T	uc001jio.2	-	7	1086	c.960G>A	c.(958-960)AAG>AAA	p.K320K	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	320	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GGGATGGCCACTTTCCTGGGA	0.463													35	154					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	52389385	52389385	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:52389385C>T	uc001jjf.1	+	2		c.78C>T								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		TTCAGTTGTTCCCCCAAGCTC	0.532													7	31					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52575934	52575934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:52575934C>T	uc001jjj.2	-	9	1161	c.973G>A	c.(973-975)GGA>AGA	p.G325R	A1CF_uc010qhn.1_Missense_Mutation_p.G333R|A1CF_uc001jji.2_Missense_Mutation_p.G325R|A1CF_uc001jjh.2_Missense_Mutation_p.G333R|A1CF_uc010qho.1_Missense_Mutation_p.G333R|A1CF_uc009xov.2_Missense_Mutation_p.G325R	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	325					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTATACTCTCCTTGCAGCATG	0.522													13	40					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52603882	52603882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:52603882C>T	uc001jjj.2	-	4	288	c.100G>A	c.(100-102)GAA>AAA	p.E34K	A1CF_uc010qhn.1_Missense_Mutation_p.E42K|A1CF_uc001jji.2_Missense_Mutation_p.E34K|A1CF_uc001jjh.2_Missense_Mutation_p.E42K|A1CF_uc010qho.1_Missense_Mutation_p.E42K|A1CF_uc009xov.2_Missense_Mutation_p.E34K|A1CF_uc001jjk.1_Missense_Mutation_p.E34K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	34					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TGTCCATTTTCCTGCAAATCC	0.413													15	33					0	0	1	0	0
MBL2	4153	broad.mit.edu	37	10	54530530	54530530	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:54530530G>T	uc001jjt.2	-	2	269	c.204C>A	c.(202-204)GGC>GGA	p.G68G		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	68	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						GGCCCTGTAAGCCTCTGAGCC	0.522													38	96					1.62957e-23	1.65083e-23	1	1	0
PCDH15	65217	broad.mit.edu	37	10	55566593	55566593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55566593C>T	uc010qhq.1	-	36	5190	c.4795G>A	c.(4795-4797)GGG>AGG	p.G1599R	PCDH15_uc010qhr.1_Missense_Mutation_p.G1594R	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAAAATGGCCCCTTTGATAAT	0.463										HNSCC(58;0.16)			48	196					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55566674	55566674	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55566674G>A	uc010qhq.1	-	36	5109	c.4714C>T	c.(4714-4716)CGA>TGA	p.R1572*	PCDH15_uc010qhr.1_Nonsense_Mutation_p.R1567*	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	425	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCTCCCAGTCGAACAGGGGAA	0.453										HNSCC(58;0.16)			56	83					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55569108	55569108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55569108C>T	uc010qhs.1	-	37	5112	c.4717G>A	c.(4717-4719)GAA>AAA	p.E1573K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.E1566K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCCACTCTTCACCCTCAAGG	0.423										HNSCC(58;0.16)			17	50					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55570420	55570420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55570420C>T	uc010qhs.1	-	36	4809	c.4414G>A	c.(4414-4416)GAA>AAA	p.E1472K	PCDH15_uc010qhq.1_Missense_Mutation_p.E1465K|PCDH15_uc010qhr.1_Missense_Mutation_p.E1460K|PCDH15_uc010qht.1_Missense_Mutation_p.E1465K|PCDH15_uc010qhu.1_Missense_Mutation_p.M1483I	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGAGGCATTTCATACCTGTAA	0.418										HNSCC(58;0.16)			28	70					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55581748	55581748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55581748G>A	uc001jju.1	-	33	6133	c.5738C>T	c.(5737-5739)TCA>TTA	p.S1913L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Missense_Mutation_p.S767L|PCDH15_uc010qhv.1_Missense_Mutation_p.S1910L|PCDH15_uc010qhw.1_Missense_Mutation_p.S1873L|PCDH15_uc010qhx.1_Missense_Mutation_p.S1844L|PCDH15_uc010qhy.1_Missense_Mutation_p.S1920L|PCDH15_uc010qhz.1_Missense_Mutation_p.S1915L|PCDH15_uc010qia.1_Missense_Mutation_p.S1893L|PCDH15_uc010qib.1_Missense_Mutation_p.S1890L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1913	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTGAAGTTCTGAAACATTTGT	0.348										HNSCC(58;0.16)			16	57					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582416	55582416	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55582416G>A	uc001jju.1	-	33	5465	c.5070C>T	c.(5068-5070)ATC>ATT	p.I1690I	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.I1687I|PCDH15_uc010qhw.1_Silent_p.I1650I|PCDH15_uc010qhx.1_Silent_p.I1621I|PCDH15_uc010qhy.1_Silent_p.I1697I|PCDH15_uc010qhz.1_Silent_p.I1692I|PCDH15_uc010qia.1_Silent_p.I1670I|PCDH15_uc010qib.1_Silent_p.I1667I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1690	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAGGAGAACTGATGACATTAG	0.423										HNSCC(58;0.16)			7	23					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582895	55582895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55582895C>T	uc001jju.1	-	33	4986	c.4591G>A	c.(4591-4593)GAA>AAA	p.E1531K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E1528K|PCDH15_uc010qhw.1_Missense_Mutation_p.E1491K|PCDH15_uc010qhx.1_Missense_Mutation_p.E1462K|PCDH15_uc010qhy.1_Missense_Mutation_p.E1538K|PCDH15_uc010qhz.1_Missense_Mutation_p.E1533K|PCDH15_uc010qia.1_Missense_Mutation_p.E1511K|PCDH15_uc010qib.1_Missense_Mutation_p.E1508K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1531	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTATGTTTTCCTTATAAAGG	0.368										HNSCC(58;0.16)			48	35					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55943267	55943267	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:55943267G>A	uc001jju.1	-	13	1922	c.1527C>T	c.(1525-1527)TTC>TTT	p.F509F	PCDH15_uc010qhq.1_Silent_p.F514F|PCDH15_uc010qhr.1_Silent_p.F509F|PCDH15_uc010qhs.1_Silent_p.F521F|PCDH15_uc010qht.1_Silent_p.F516F|PCDH15_uc010qhu.1_Silent_p.F509F|PCDH15_uc001jjv.1_Silent_p.F487F|PCDH15_uc010qhv.1_Silent_p.F509F|PCDH15_uc010qhw.1_Silent_p.F472F|PCDH15_uc010qhx.1_Silent_p.F509F|PCDH15_uc010qhy.1_Silent_p.F514F|PCDH15_uc010qhz.1_Silent_p.F509F|PCDH15_uc010qia.1_Silent_p.F487F|PCDH15_uc010qib.1_Silent_p.F487F|PCDH15_uc001jjw.2_Silent_p.F509F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	509	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ATATTTCAGGGAAGGTTGGCG	0.398										HNSCC(58;0.16)			27	48					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56138694	56138694	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:56138694G>A	uc001jju.1	-	4	561	c.166C>T	c.(166-168)CTG>TTG	p.L56L	PCDH15_uc010qhq.1_Silent_p.L61L|PCDH15_uc010qhr.1_Silent_p.L56L|PCDH15_uc010qhs.1_Silent_p.L61L|PCDH15_uc010qht.1_Silent_p.L56L|PCDH15_uc010qhu.1_Silent_p.L56L|PCDH15_uc001jjv.1_Silent_p.L34L|PCDH15_uc010qhv.1_Silent_p.L56L|PCDH15_uc010qhw.1_Silent_p.L56L|PCDH15_uc010qhx.1_Silent_p.L56L|PCDH15_uc010qhy.1_Silent_p.L61L|PCDH15_uc010qhz.1_Silent_p.L56L|PCDH15_uc010qia.1_Silent_p.L34L|PCDH15_uc010qib.1_Silent_p.L34L|PCDH15_uc001jjw.2_Silent_p.L56L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	56	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTGTCCACCAGAATTGTACCT	0.423										HNSCC(58;0.16)			43	111					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61011339	61011339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61011339C>T	uc001jkn.2	-	14	1764	c.1630G>A	c.(1630-1632)GGA>AGA	p.G544R	FAM13C_uc001jko.2_Missense_Mutation_p.G446R|FAM13C_uc010qid.1_Missense_Mutation_p.G460R|FAM13C_uc010qie.1_Missense_Mutation_p.G461R|FAM13C_uc010qif.1_Missense_Mutation_p.G566R	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	544										ovary(2)	2						ACATACCTTCCTGTTTGTTTA	0.393													33	141					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61443910	61443910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61443910C>T	uc010qig.1	-	2	589	c.140G>A	c.(139-141)GGA>GAA	p.G47E		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	47	Cytoplasmic (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TTTTCCTTTTCCTTCACCAAA	0.433													64	35					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832561	61832561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61832561C>T	uc001jky.2	-	37	8270	c.8078G>A	c.(8077-8079)GGA>GAA	p.G2693E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2693					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGAAATACTTCCTTTGGCTTC	0.502													60	33					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833787	61833787	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61833787C>T	uc001jky.2	-	37	7044	c.6852G>A	c.(6850-6852)CGG>CGA	p.R2284R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2284					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGAAGGATCCCGCCCGGACT	0.493													81	43					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61833981	61833981	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61833981G>A	uc001jky.2	-	37	6850	c.6658C>T	c.(6658-6660)CAA>TAA	p.Q2220*	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2220					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTTTCATTTGAAATGCTTTA	0.423													71	38					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834219	61834219	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61834219G>A	uc001jky.2	-	37	6612	c.6420C>T	c.(6418-6420)GCC>GCT	p.A2140A	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2140					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGCTTTGTGGGGCTGAAGGTG	0.423													21	73					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834455	61834455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61834455C>T	uc001jky.2	-	37	6376	c.6184G>A	c.(6184-6186)GAG>AAG	p.E2062K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2062				ER -> GG (in Ref. 1; AAA64834).	establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCTGTCTCTCCTCACCATCC	0.383													23	56					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61835987	61835987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61835987G>A	uc001jky.2	-	37	4844	c.4652C>T	c.(4651-4653)TCC>TTC	p.S1551F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1551	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCCTAATGTGGATTTGATTGG	0.418													28	83					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61894074	61894074	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:61894074C>T	uc001jky.2	-	25	2988	c.2796G>A	c.(2794-2796)CGG>CGA	p.R932R	ANK3_uc001jkw.2_Silent_p.R66R|ANK3_uc009xpa.2_Silent_p.R66R|ANK3_uc001jkx.2_Silent_p.R110R|ANK3_uc010qih.1_Silent_p.R933R|ANK3_uc001jkz.3_Silent_p.R926R|ANK3_uc001jla.1_5'UTR|ANK3_uc001jlb.1_Silent_p.R439R	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	932					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCATGCTGTCCCGTGCATAGG	0.408													9	25					0	0	1	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585772	66585772	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:66585772G>A	uc009xpm.1	+	1		c.488G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						AGTCTACAAAGAAATGTACAA	0.463													3	13					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	67748510	67748510	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:67748510C>T	uc009xpn.1	-	16	2328	c.2205G>A	c.(2203-2205)GCG>GCA	p.A735A	CTNNA3_uc001jmw.2_Silent_p.A735A	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	735					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ATATCATTTTCGCTGCATAGA	0.378													30	64					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	67829092	67829092	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:67829092G>A	uc009xpn.1	-	15	2256	c.2133C>T	c.(2131-2133)ATC>ATT	p.I711I	CTNNA3_uc001jmw.2_Silent_p.I711I	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	711					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TCTCCATCATGATCATACACA	0.358													53	61					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687190	68687190	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:68687190C>T	uc001jmz.1	+	2	1066	c.516C>T	c.(514-516)ATC>ATT	p.I172I	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.I172I	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	172	Extracellular (Potential).|LRR 5.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TGAGAACCATCCCTGTGCGAA	0.483													51	27					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940239	68940239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:68940239C>T	uc009xpn.1	-	7	1006	c.883G>A	c.(883-885)GAA>AAA	p.E295K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E295K|CTNNA3_uc001jmx.3_Missense_Mutation_p.E295K|CTNNA3_uc009xpo.1_Missense_Mutation_p.E155K|CTNNA3_uc001jna.2_Missense_Mutation_p.E307K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	295					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GGTCGTATTTCCTCCTCAGTT	0.438													21	32					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	69366690	69366690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:69366690C>T	uc009xpn.1	-	3	340	c.217G>A	c.(217-219)GGA>AGA	p.G73R	CTNNA3_uc001jmw.2_Missense_Mutation_p.G73R|CTNNA3_uc001jmx.3_Missense_Mutation_p.G73R|CTNNA3_uc009xpo.1_5'UTR|CTNNA3_uc001jna.2_Missense_Mutation_p.G85R	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	73					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity	p.G73E(1)		skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ATCTTCTCTCCCTTGTCTAAT	0.468													23	35					0	0	1	0	0
DNA2	1763	broad.mit.edu	37	10	70190408	70190408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:70190408G>A	uc001jof.2	-	14	2251	c.2251C>T	c.(2251-2253)CTC>TTC	p.L751F	DNA2_uc001jog.1_Intron|DNA2_uc001joh.1_Intron	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	665					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						CAGGCGTAGAGAATTCTTACC	0.313													6	2					0	0	1	0	0
TET1	80312	broad.mit.edu	37	10	70333188	70333188	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:70333188C>T	uc001jok.3	+	2	1598	c.1093C>T	c.(1093-1095)CTA>TTA	p.L365L		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	365					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CACCTCTTTCCTAGGACAGGC	0.517													40	105					0	0	1	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70940115	70940115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:70940115C>T	uc001jpe.1	+	1	123	c.68C>T	c.(67-69)GCC>GTC	p.A23V	SUPV3L1_uc010qjd.1_5'UTR	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	23					DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						CACCGGGCAGCCATCTGCTCT	0.682													14	24					0	0	1	0	0
H2AFY2	55506	broad.mit.edu	37	10	71835457	71835457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:71835457C>T	uc001jqm.2	+	2	502	c.43C>T	c.(43-45)CGT>TGT	p.R15C	H2AFY2_uc001jqn.2_RNA	NM_018649	NP_061119	Q9P0M6	H2AW_HUMAN	H2A histone family, member Y2	15	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding			skin(1)	1						CAAGCTGTCCCGTTCAGCTAG	0.552													54	28					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72299516	72299516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:72299516G>A	uc001jrd.3	+	15	2187	c.1906G>A	c.(1906-1908)GAG>AAG	p.E636K	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	636										ovary(2)|central_nervous_system(1)	3						CCCCCGAGAGGAGGTGAGGGT	0.657													21	15					0	0	1	0	0
KIAA1274	27143	broad.mit.edu	37	10	72300940	72300940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:72300940G>A	uc001jrd.3	+	16	2272	c.1991G>A	c.(1990-1992)GGC>GAC	p.G664D	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	664										ovary(2)|central_nervous_system(1)	3						TGCCTCAGCGGCCAGGGCCGT	0.607													48	32					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72509663	72509663	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:72509663G>A	uc001jrh.2	+	16	2349	c.2349G>A	c.(2347-2349)CTG>CTA	p.L783L	ADAMTS14_uc001jrg.2_Silent_p.L786L	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	783	Spacer.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCATGGGCCTGGAGTGGGAGG	0.642													20	46					0	0	1	0	0
C10orf54	64115	broad.mit.edu	37	10	73511435	73511435	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:73511435G>A	uc001jsd.2	-	6	1029	c.888C>T	c.(886-888)TTC>TTT	p.F296F	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Silent_p.F164F|C10orf54_uc009xqm.2_Silent_p.F134F	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	296	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CCAGGGATGGGAAGAAGACGT	0.622													12	36					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73572526	73572526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:73572526G>A	uc001jrx.3	+	66	9889	c.9512G>A	c.(9511-9513)GGA>GAA	p.G3171E	CDH23_uc001jsg.3_Missense_Mutation_p.G931E|CDH23_uc001jsh.3_Missense_Mutation_p.G931E|CDH23_uc001jsi.3_Missense_Mutation_p.G931E|CDH23_uc001jsj.3_Missense_Mutation_p.G68E|CDH23_uc010qjr.1_Missense_Mutation_p.G68E	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	3171	Cytoplasmic (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TCTCCCCAGGGAACTTTTGGG	0.582													5	11					0	0	1	0	0
SPOCK2	9806	broad.mit.edu	37	10	73822590	73822590	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:73822590C>T	uc001jso.1	-	11	1648	c.1203G>A	c.(1201-1203)GAG>GAA	p.E401E	SPOCK2_uc001jsp.2_Silent_p.E401E	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	401	Glu-rich.				extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						cgcctgcttcctccgtctcct	0.478													9	12					0	0	1	0	0
ASCC1	51008	broad.mit.edu	37	10	73892920	73892920	+	Nonsense_Mutation	SNP	G	A	A	rs141611243		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:73892920G>A	uc001jst.1	-	9	958	c.850C>T	c.(850-852)CGA>TGA	p.R284*	ASCC1_uc001jsr.1_Nonsense_Mutation_p.R171*|ASCC1_uc001jss.1_Nonsense_Mutation_p.R256*|ASCC1_uc001jsu.1_Nonsense_Mutation_p.R256*|ASCC1_uc010qju.1_Nonsense_Mutation_p.R277*			Q8N9N2	ASCC1_HUMAN	RecName: Full=Activating signal cointegrator 1 complex subunit 1; AltName: Full=ASC-1 complex subunit p50; AltName: Full=Trip4 complex subunit p50;	284					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	RNA binding				0						TCCAGCACTCGATCAACTAAT	0.353													9	30					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75090992	75090992	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:75090992C>T	uc009xrc.2	-	9	1051	c.930G>A	c.(928-930)GAG>GAA	p.E310E	TTC18_uc001jty.2_Silent_p.E310E|TTC18_uc009xrd.1_Silent_p.E118E	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	310							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CTCTTGTGATCTCTACAGGCC	0.368													7	19					0	0	1	0	0
C10orf55	414236	broad.mit.edu	37	10	75671464	75671464	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:75671464G>A	uc001jvz.1	-	5	776	c.435C>T	c.(433-435)ATC>ATT	p.I145I	PLAU_uc001jwa.2_Intron|PLAU_uc010qkw.1_5'UTR|PLAU_uc010qkx.1_Intron|PLAU_uc001jwb.2_Intron|PLAU_uc001jwc.2_Intron|PLAU_uc009xrq.1_Intron	NM_001001791	NP_001001791	Q5SWW7	CJ055_HUMAN	hypothetical protein LOC414236	145											0	Prostate(51;0.0112)					GGGTCCTCCGGATTCCATCCA	0.627													3	4					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76603085	76603085	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:76603085A>C	uc001jwn.1	+	3	963	c.470A>C	c.(469-471)AAA>ACA	p.K157T	MYST4_uc001jwm.1_Missense_Mutation_p.K157T|MYST4_uc001jwo.1_Missense_Mutation_p.K157T|MYST4_uc001jwp.1_Missense_Mutation_p.K157T	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	157	H15.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CTGGGGGCCAAACGCGCTGTG	0.522			T	CREBBP	AML								32	15					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76735624	76735624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:76735624C>T	uc001jwn.1	+	8	2022	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	MYST4_uc001jwm.1_Intron|MYST4_uc001jwo.1_Intron|MYST4_uc001jwp.1_Intron	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	510	Ser-rich.|Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TCACAAAAGTCCAGCACGGCC	0.562			T	CREBBP	AML								34	38					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81060673	81060673	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:81060673C>T	uc001kaf.2	+	17	2565	c.1993C>T	c.(1993-1995)CAG>TAG	p.Q665*	ZMIZ1_uc001kag.2_Nonsense_Mutation_p.Q541*	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	665					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CAACACCATCCAGATCACCGT	0.652													15	15					0	0	1	0	0
SFTPA1	653509	broad.mit.edu	37	10	81373730	81373730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:81373730G>A	uc001kap.2	+	6	729	c.608G>A	c.(607-609)GGG>GAG	p.G203E	SFTPA1_uc001kaq.2_Missense_Mutation_p.G203E|SFTPA1_uc009xry.2_Missense_Mutation_p.G218E|SFTPA1_uc001kar.2_Missense_Mutation_p.G203E|SFTPA1_uc010qlt.1_Missense_Mutation_p.G144E|SFTPA1_uc009xrz.2_Missense_Mutation_p.G133E|SFTPA1_uc009xsa.2_Missense_Mutation_p.G203E|SFTPA1_uc009xsf.2_RNA	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	203	C-type lectin.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TACTCAGACGGGACCCCTGTA	0.547													187	96					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702205	81702205	+	Silent	SNP	C	T	T	rs139257328		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:81702205C>T	uc001kbh.2	-	4	415	c.372G>A	c.(370-372)GGG>GGA	p.G124G	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	124	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			TCCCCTGCTTCCCCAGGGGAC	0.597													18	33					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81702241	81702241	+	Silent	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:81702241A>C	uc001kbh.2	-	4	379	c.336T>G	c.(334-336)GGT>GGG	p.G112G	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	112	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GACCAGGCACACCGGGAGGTC	0.572													12	37					0	0	1	0	0
ANXA11	311	broad.mit.edu	37	10	81928875	81928875	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:81928875T>C	uc001kbq.1	-	6	1236	c.411A>G	c.(409-411)GGA>GGG	p.G137G	ANXA11_uc010qlx.1_Silent_p.G237G|ANXA11_uc001kbr.1_Silent_p.G137G|ANXA11_uc001kbs.1_Silent_p.G137G|ANXA11_uc001kbt.1_Silent_p.G137G|ANXA11_uc010qly.1_Silent_p.G104G|ANXA11_uc009xsq.1_Silent_p.G137G|ANXA11_uc001kbu.1_Silent_p.G137G	NM_145869	NP_665876	P50995	ANX11_HUMAN	annexin A11	137					cell cycle|cytokinesis, completion of separation|phagocytosis|response to calcium ion	azurophil granule|melanosome|midbody|nuclear envelope|nucleoplasm|phagocytic vesicle|specific granule|spindle	calcium-dependent phospholipid binding|calcium-dependent protein binding|S100 alpha binding			ovary(1)	1	Prostate(51;0.00985)|all_epithelial(25;0.0951)		Colorectal(32;0.109)			GGGGCTGCTGTCCGGGGGGTG	0.692													5	17					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85970861	85970861	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:85970861C>T	uc001kcv.2	+	13	1425	c.1425C>T	c.(1423-1425)CTC>CTT	p.L475L	CDHR1_uc001kcw.2_Silent_p.L475L|CDHR1_uc009xst.2_Intron|CDHR1_uc001kcx.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	475	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						TCGACTCCCTCTACTACGTTG	0.582													23	65					0	0	1	0	0
LRIT2	340745	broad.mit.edu	37	10	85984098	85984098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:85984098C>T	uc001kcy.2	-	2	891	c.883G>A	c.(883-885)GAA>AAA	p.E295K	LRIT2_uc010qmc.1_Missense_Mutation_p.E295K	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	295	Ig-like.					integral to membrane				ovary(2)	2						CCATCAAATTCTCTCCACATA	0.517													9	19					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87484311	87484311	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:87484311G>A	uc001kdl.1	-	11	1757	c.1656C>T	c.(1654-1656)ATC>ATT	p.I552I	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.I123I	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	552	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGAAGATGCTGATTTTCTCCT	0.502										Multiple Myeloma(13;0.14)			15	38					0	0	1	0	0
OPN4	94233	broad.mit.edu	37	10	88419742	88419742	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:88419742C>T	uc001kdq.2	+	6	1118	c.891C>T	c.(889-891)ATC>ATT	p.I297I	OPN4_uc001kdp.2_Silent_p.I308I|OPN4_uc010qmk.1_Silent_p.I308I|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	297	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						TGGCCAAGATCATGCTGCTGG	0.622													45	21					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88703133	88703133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:88703133C>T	uc001kea.2	-	6	1535	c.1408G>A	c.(1408-1410)GAG>AAG	p.E470K	MMRN2_uc010qmn.1_Missense_Mutation_p.E113K|MMRN2_uc009xtb.2_Missense_Mutation_p.E427K	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	470	Potential.					extracellular space				large_intestine(1)	1						AGGTTGAGCTCCAGGAGCTGC	0.582													15	31					0	0	1	0	0
SNCG	6623	broad.mit.edu	37	10	88722411	88722411	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:88722411G>A	uc001keb.2	+	4	509	c.342G>A	c.(340-342)GAG>GAA	p.E114E		NM_003087	NP_003078	O76070	SYUG_HUMAN	synuclein, gamma (breast cancer-specific protein	114						microtubule organizing center|perinuclear region of cytoplasm|spindle	protein binding				0						CATCCAAAGAGAAAGAGGAAG	0.607													5	17					0	0	1	0	0
GLUD1	2746	broad.mit.edu	37	10	88836409	88836409	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:88836409G>A	uc001keh.2	-	2	547	c.450C>T	c.(448-450)ATC>ATT	p.I150I	GLUD1_uc001keg.2_5'UTR|GLUD1_uc010qmp.1_Silent_p.I17I	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	150					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	TGCTGTAACGGATACCTGGTG	0.398													19	35					0	0	1	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143531	91143531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:91143531G>A	uc001kgh.2	+	2	541	c.461G>A	c.(460-462)GGA>GAA	p.G154E	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	154	TPR 3.						binding				0						AAGTGTGGTGGAAAGAATTAT	0.498													18	61					0	0	1	0	0
PCGF5	84333	broad.mit.edu	37	10	92982654	92982654	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:92982654T>G	uc001khh.2	+	2	273	c.26T>G	c.(25-27)GTG>GGG	p.V9G	PCGF5_uc001khg.2_RNA|PCGF5_uc010qnk.1_Missense_Mutation_p.V9G|PCGF5_uc001khi.2_Missense_Mutation_p.V9G	NM_032373	NP_115749	Q86SE9	PCGF5_HUMAN	polycomb group ring finger 5	9					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|PcG protein complex	zinc ion binding			lung(1)	1						AAACACTTGGTGAAAGATTTT	0.423													16	12					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95385332	95385332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:95385332G>A	uc001kiu.3	+	5	1003	c.865G>A	c.(865-867)GAA>AAA	p.E289K		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	289	GAF 2.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TTGCCTCCAGGAATTCTACGA	0.378													25	12					0	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95720261	95720261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:95720261C>T	uc009xuj.2	-	1	1412	c.893G>A	c.(892-894)CGA>CAA	p.R298Q		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GGCTGGTCTTCGAGTATCAAC	0.483													18	19					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791303	95791303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:95791303G>A	uc001kjk.2	+	2	1134	c.500G>A	c.(499-501)GGA>GAA	p.G167E	PLCE1_uc010qnx.1_Missense_Mutation_p.G167E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	167					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGTCCTTTAGGAAATCAGTCA	0.428													27	69					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791319	95791319	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:95791319C>T	uc001kjk.2	+	2	1150	c.516C>T	c.(514-516)ATC>ATT	p.I172I	PLCE1_uc010qnx.1_Silent_p.I172I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	172					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGTCAGTGATCATAGAGACAG	0.438													23	69					0	0	1	0	0
HELLS	3070	broad.mit.edu	37	10	96348103	96348103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96348103G>A	uc001kjt.2	+	13	1549	c.1444G>A	c.(1444-1446)GCC>ACC	p.A482T	HELLS_uc001kjs.2_Missense_Mutation_p.A466T|HELLS_uc009xul.2_Missense_Mutation_p.A384T|HELLS_uc009xum.2_Missense_Mutation_p.A352T|HELLS_uc009xun.2_Missense_Mutation_p.A358T|HELLS_uc009xuo.2_Missense_Mutation_p.A528T|HELLS_uc001kju.2_Missense_Mutation_p.A121T|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.A344T|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	482					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		CTTTTATACAGCCATTGTGAA	0.363													6	29					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541593	96541593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96541593C>T	uc010qnz.1	+	5	658	c.658C>T	c.(658-660)CCC>TCC	p.P220S	CYP2C19_uc009xus.1_Missense_Mutation_p.P85S|CYP2C19_uc010qny.1_Missense_Mutation_p.P198S	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	220					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CAATAATTTTCCCACTATCAT	0.274													5	24					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707551	96707551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96707551C>T	uc001kka.3	+	4	522	c.497C>T	c.(496-498)CCC>CTC	p.P166L	CYP2C9_uc009xut.2_Missense_Mutation_p.P166L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	166					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CCCTGTGATCCCACTTTCATC	0.308													15	66					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707561	96707561	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96707561C>T	uc001kka.3	+	4	532	c.507C>T	c.(505-507)ATC>ATT	p.I169I	CYP2C9_uc009xut.2_Silent_p.I169I	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	169					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CCACTTTCATCCTGGGCTGTG	0.313													38	44					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96826964	96826964	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96826964C>T	uc001kkb.2	-	3	576	c.481_splice	c.e3+1	p.A161_splice	CYP2C8_uc001kkc.2_Splice_Site|CYP2C8_uc010qoa.1_Splice_Site_p.A91_splice|CYP2C8_uc010qob.1_Splice_Site_p.A75_splice|CYP2C8_uc010qoc.1_Splice_Site_p.A59_splice|CYP2C8_uc010qod.1_Splice_Site_p.A75_splice	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,						exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GAGTCACCCACCCTTGGTTTT	0.502													31	100					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	96998373	96998373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:96998373C>T	uc001kkh.2	-	6	864	c.755G>A	c.(754-756)GGA>GAA	p.G252E	PDLIM1_uc001kki.2_Missense_Mutation_p.G252E|PDLIM1_uc009xuv.2_Intron|PDLIM1_uc001kkj.1_Missense_Mutation_p.G252E	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	252					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CTGAGCATTTCCAATCGACGC	0.493													14	37					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	97031472	97031472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:97031472C>T	uc001kkh.2	-	2	275	c.166G>A	c.(166-168)GAA>AAA	p.E56K	PDLIM1_uc001kki.2_Missense_Mutation_p.E56K|PDLIM1_uc009xuv.2_Missense_Mutation_p.E56K|PDLIM1_uc001kkj.1_Missense_Mutation_p.E56K	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	56	PDZ.				response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CTAGTATTTTCCCCATCAATG	0.448													45	74					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97078132	97078132	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:97078132G>A	uc001kkp.2	-	30	3801	c.3756C>T	c.(3754-3756)CTC>CTT	p.L1252L	SORBS1_uc001kkk.2_Silent_p.L508L|SORBS1_uc001kkl.2_Silent_p.L596L|SORBS1_uc001kkn.2_Silent_p.L759L|SORBS1_uc001kkm.2_Silent_p.L794L|SORBS1_uc001kko.2_Silent_p.L1111L|SORBS1_uc001kkq.2_Silent_p.L865L|SORBS1_uc001kkr.2_Silent_p.L700L|SORBS1_uc001kks.2_Silent_p.L644L|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Silent_p.L741L|SORBS1_uc001kkv.2_Silent_p.L776L|SORBS1_uc001kkw.2_Silent_p.L1226L|SORBS1_uc010qoe.1_Silent_p.L709L	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1252	SH3 3.				focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		CTCCATCGCGGAGTTCCAACT	0.358													49	20					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97096790	97096790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:97096790G>A	uc001kkp.2	-	28	3172	c.3127C>T	c.(3127-3129)CGT>TGT	p.R1043C	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Missense_Mutation_p.R997C|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1043					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		GGGGTGGGACGATCTGACCAA	0.562													10	51					0	0	1	0	0
ENTPD1	953	broad.mit.edu	37	10	97604267	97604267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:97604267G>A	uc001klh.3	+	5	772	c.448G>A	c.(448-450)GAT>AAT	p.D150N	ENTPD1_uc001kle.1_Missense_Mutation_p.D157N|ENTPD1_uc001kli.3_Missense_Mutation_p.D157N|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.D162N|ENTPD1_uc010qok.1_Missense_Mutation_p.D42N|ENTPD1_uc010qol.1_Missense_Mutation_p.D42N|ENTPD1_uc010qom.1_Missense_Mutation_p.D150N|ENTPD1_uc010qon.1_Missense_Mutation_p.D12N|ENTPD1_uc009xva.2_Missense_Mutation_p.D12N|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	150	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		CAGGGTTCTGGATGTGGTGGA	0.443													35	97					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98355344	98355344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:98355344C>T	uc001kmq.2	-	17	2536	c.2408G>A	c.(2407-2409)AGA>AAA	p.R803K	PIK3AP1_uc001kmo.2_Missense_Mutation_p.R402K|PIK3AP1_uc001kmp.2_Missense_Mutation_p.R625K	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	803						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCAGCGTCCTCTGGGTGGAAC	0.423													24	68					0	0	1	0	0
C10orf12	26148	broad.mit.edu	37	10	98743002	98743002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:98743002C>T	uc001kmv.2	+	1	1962	c.1855C>T	c.(1855-1857)CCC>TCC	p.P619S		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	619										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AGAGATTTTCCCCAGCAGGGA	0.502													28	64					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98808836	98808836	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:98808836G>A	uc001kmw.2	-	14	1593	c.1341C>T	c.(1339-1341)CTC>CTT	p.L447L	SLIT1_uc009xvh.1_Silent_p.L457L	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	447	LRRCT 2.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CCAGCCACTTGAGGTTACAGT	0.602													44	22					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99126654	99126654	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:99126654C>A	uc001knf.2	-	27	3199	c.3060G>T	c.(3058-3060)GTG>GTT	p.V1020V	RRP12_uc001kne.2_Silent_p.V35V|RRP12_uc009xvl.2_Silent_p.V137V|RRP12_uc009xvm.2_Silent_p.V738V|RRP12_uc010qou.1_Silent_p.V959V|RRP12_uc009xvn.2_Silent_p.V920V	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1020						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		ACAGCCTTTTCACCAGCTCAA	0.602													47	112					1.61863e-15	1.63449e-15	1	1	0
RRP12	23223	broad.mit.edu	37	10	99126808	99126808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:99126808G>A	uc001knf.2	-	26	3176	c.3037C>T	c.(3037-3039)CGC>TGC	p.R1013C	RRP12_uc001kne.2_Missense_Mutation_p.R28C|RRP12_uc009xvl.2_Missense_Mutation_p.R130C|RRP12_uc009xvm.2_Missense_Mutation_p.R731C|RRP12_uc010qou.1_Missense_Mutation_p.R952C|RRP12_uc009xvn.2_Missense_Mutation_p.R913C	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1013						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		CCAAACTTGCGGATGAACTTG	0.587													20	57					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99131889	99131889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:99131889G>A	uc001knf.2	-	20	2423	c.2284C>T	c.(2284-2286)CCG>TCG	p.P762S	RRP12_uc009xvl.2_5'UTR|RRP12_uc009xvm.2_Missense_Mutation_p.P480S|RRP12_uc010qou.1_Missense_Mutation_p.P701S|RRP12_uc009xvn.2_Missense_Mutation_p.P662S	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	762						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		TCAGCACACGGAGCCAAGGCC	0.627													11	48					0	0	1	0	0
COX15	1355	broad.mit.edu	37	10	101487313	101487313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:101487313C>T	uc001kqb.3	-	3	897	c.280G>A	c.(280-282)GAG>AAG	p.E94K	COX15_uc001kqc.3_Missense_Mutation_p.E94K|COX15_uc010qpj.1_5'UTR	NM_078470	NP_510870	Q7KZN9	COX15_HUMAN	COX15 homolog isoform 1	94					heme a biosynthetic process|respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;3.08e-10)|all cancers(201;2.43e-08)		AGGCCAGACTCTGTCAACCTT	0.423													63	26					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101639683	101639683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:101639683G>A	uc001kqj.2	-	16	4525	c.4433C>T	c.(4432-4434)TCC>TTC	p.S1478F	DNMBP_uc010qpl.1_Missense_Mutation_p.S414F|DNMBP_uc001kqg.2_Missense_Mutation_p.S766F|DNMBP_uc001kqh.2_Missense_Mutation_p.S1110F	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1478					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TCCTGGTACGGAGTAGCCAAC	0.537													59	28					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102049854	102049854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:102049854C>T	uc001kqx.1	-	14	2551	c.2168G>A	c.(2167-2169)GGA>GAA	p.G723E	PKD2L1_uc009xwm.1_Missense_Mutation_p.G676E	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	723	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GGACACTACTCCTTCCAGGAC	0.562													46	65					0	0	1	0	0
SFXN3	81855	broad.mit.edu	37	10	102794526	102794526	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:102794526G>A	uc001ksp.2	+	3	543	c.87G>A	c.(85-87)CGG>CGA	p.R29R	SFXN3_uc001ksq.2_Silent_p.R29R|SFXN3_uc010qpx.1_Silent_p.R29R	NM_030971	NP_112233	Q9BWM7	SFXN3_HUMAN	sideroflexin 3	29					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GCAGAGCCCGGCACTTTTTCA	0.522													30	79					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104174841	104174841	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:104174841G>A	uc001kvg.1	-	4	1430	c.903C>T	c.(901-903)ATC>ATT	p.I301I	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Silent_p.I301I	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	301					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GCACCTCATCGATGTCAGTCT	0.672													8	26					0	0	1	0	0
LOC729020	729020	broad.mit.edu	37	10	105006213	105006213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:105006213G>A	uc009xxi.2	+	1	570	c.460G>A	c.(460-462)GAA>AAA	p.E154K	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	154					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						GAAATTCATGGAAGATATGAT	0.473													15	47					0	0	1	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105362802	105362802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:105362802C>T	uc001kxj.1	-	14	2229	c.2089G>A	c.(2089-2091)GAC>AAC	p.D697N	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Missense_Mutation_p.D532N|SH3PXD2A_uc010qqt.1_Missense_Mutation_p.D574N|SH3PXD2A_uc009xxn.1_Missense_Mutation_p.D532N|SH3PXD2A_uc010qqu.1_Missense_Mutation_p.D640N	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	725					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		ATGCCTGCGTCCGAAGCAGAG	0.537													29	76					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105893416	105893416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:105893416C>T	uc001kxw.2	-	35	4674	c.4558G>A	c.(4558-4560)GAT>AAT	p.D1520N	C10orf79_uc009xxq.2_Missense_Mutation_p.D799N	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1520											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ATCTGAATATCCCAAGCCTTC	0.318													7	24					0	0	1	0	0
GSTO1	9446	broad.mit.edu	37	10	106014984	106014984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:106014984C>T	uc001kya.2	+	2	107	c.98C>T	c.(97-99)CCG>CTG	p.P33L		NM_004832	NP_004823	P78417	GSTO1_HUMAN	glutathione-S-transferase omega 1	33	GST N-terminal.				xenobiotic metabolic process	cytosol	glutathione transferase activity|monodehydroascorbate reductase (NADH) activity				0		Colorectal(252;0.102)|Breast(234;0.122)		Epithelial(162;8.07e-10)|all cancers(201;2.72e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0147)	Glutathione(DB00143)	AGGTTCTGCCCGTTTGCTGAG	0.692													10	43					0	0	1	0	0
CCDC147	159686	broad.mit.edu	37	10	106124612	106124612	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:106124612C>T	uc001kyh.2	+	4	696	c.562C>T	c.(562-564)CGA>TGA	p.R188*		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	188	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		GGAAACAGAGCGATCAAAAGA	0.473													7	20					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106918717	106918717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:106918717G>A	uc001kyi.1	+	11	1924	c.1697G>A	c.(1696-1698)AGC>AAC	p.S566N		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	566	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGAATCTCTAGCAAGGAGACA	0.408													16	34					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106960879	106960879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:106960879G>A	uc001kyi.1	+	16	2356	c.2129G>A	c.(2128-2130)GGA>GAA	p.G710E	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	710	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCTCTAAGGGAGAGCCTTGT	0.438													13	22					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107005328	107005328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:107005328C>T	uc001kyi.1	+	21	3124	c.2897C>T	c.(2896-2898)TCC>TTC	p.S966F	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	966	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGCAGCATTTCCTTCACATTC	0.448													19	72					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111892132	111892132	+	Missense_Mutation	SNP	C	T	T	rs139595633	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:111892132C>T	uc001kyt.3	+	15	2116	c.1802C>T	c.(1801-1803)CCG>CTG	p.P601L	ADD3_uc001kys.3_Intron|ADD3_uc001kyu.2_Missense_Mutation_p.P601L|ADD3_uc001kyv.2_Missense_Mutation_p.P601L|ADD3_uc001kyw.2_Intron|ADD3_uc001kyx.2_Missense_Mutation_p.P174L	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	601						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		ACTCAGTCACCGCAAAATGTC	0.398													23	17					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115526241	115526241	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:115526241C>T	uc001lat.1	+	2	644	c.82C>T	c.(82-84)CAG>TAG	p.Q28*	C10orf81_uc001lar.1_Nonsense_Mutation_p.Q34*|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	28	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		ACCACCTTCTCAGCTGTTCTC	0.338													20	38					0	0	1	0	0
GFRA1	2674	broad.mit.edu	37	10	117884941	117884941	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:117884941G>C	uc001lcj.2	-	6	1259	c.561C>G	c.(559-561)TGC>TGG	p.C187W	GFRA1_uc001lci.2_Missense_Mutation_p.C182W|GFRA1_uc009xyr.2_Missense_Mutation_p.C182W	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	187	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TGCGGCGGTTGCAGACATCGT	0.607													3	30					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118351422	118351422	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:118351422C>T	uc001lco.1	+	3	207	c.189C>T	c.(187-189)AAC>AAT	p.N63N	PNLIPRP1_uc001lcp.2_Silent_p.N63N|PNLIPRP1_uc001lcn.2_Silent_p.N63N|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	63					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CCAATGAAAACCCAAACAACT	0.532													18	88					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118365049	118365049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:118365049G>A	uc001lco.1	+	12	1342	c.1324G>A	c.(1324-1326)GGA>AGA	p.G442R	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.G442R	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	442	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		TGTGCAAAAGGGAGAAGAGAA	0.408													7	31					0	0	1	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118394456	118394456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:118394456G>A	uc001lcq.2	+	11	948	c.925G>A	c.(925-927)GAT>AAT	p.D309N	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	308					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		TGCCTCCTACGATGAGTTTCA	0.507													22	8					0	0	1	0	0
SLC18A2	6571	broad.mit.edu	37	10	119003692	119003692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:119003692C>T	uc001ldd.1	+	3	363	c.332C>T	c.(331-333)TCC>TTC	p.S111F	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	111	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	ACCAACGCGTCCGCTGTTCCT	0.512													30	39					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123298175	123298175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123298175C>T	uc010qtk.1	-	6	1326	c.679G>A	c.(679-681)GGA>AGA	p.G227R	FGFR2_uc010qtg.1_Missense_Mutation_p.G227R|FGFR2_uc010qth.1_Missense_Mutation_p.G112R|FGFR2_uc010qti.1_Missense_Mutation_p.G138R|FGFR2_uc010qtj.1_Missense_Mutation_p.G227R|FGFR2_uc010qtl.1_Missense_Mutation_p.G227R|FGFR2_uc010qtm.1_Missense_Mutation_p.G112R|FGFR2_uc001lfl.3_Missense_Mutation_p.G227R|FGFR2_uc001lfm.2_Missense_Mutation_p.G138R|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.G246R|FGFR2_uc010qto.1_Missense_Mutation_p.G131R|FGFR2_uc001lfo.1_Missense_Mutation_p.G246R|FGFR2_uc010qtp.1_Missense_Mutation_p.G246R|FGFR2_uc010qtq.1_Missense_Mutation_p.G246R	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	227	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding	p.G227E(1)		endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GTATAATTTCCCTTGTCAGAT	0.483		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				14	40					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844368	123844368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123844368G>A	uc001lfv.2	+	4	2713	c.2353G>A	c.(2353-2355)GAG>AAG	p.E785K	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.E785K|TACC2_uc010qtv.1_Missense_Mutation_p.E785K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	785						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCCCCAGGGGGAGAACTTGGC	0.637													21	46					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844719	123844719	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123844719C>T	uc001lfv.2	+	4	3064	c.2704C>T	c.(2704-2706)CAA>TAA	p.Q902*	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Nonsense_Mutation_p.Q902*|TACC2_uc010qtv.1_Nonsense_Mutation_p.Q902*	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	902						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ATCAGAACTTCAAAGTCAGCT	0.498													8	37					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970430	123970430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123970430C>T	uc001lfv.2	+	9	6850	c.6490C>T	c.(6490-6492)CCC>TCC	p.P2164S	TACC2_uc001lfw.2_Missense_Mutation_p.P310S|TACC2_uc009xzx.2_Missense_Mutation_p.P2119S|TACC2_uc010qtv.1_Missense_Mutation_p.P2168S|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.P242S|TACC2_uc001lga.2_Missense_Mutation_p.P242S|TACC2_uc009xzy.2_Missense_Mutation_p.P242S|TACC2_uc001lgb.2_Missense_Mutation_p.P199S|TACC2_uc010qtw.1_Missense_Mutation_p.P259S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2164						microtubule organizing center|nucleus	nuclear hormone receptor binding	p.P2164H(1)		ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GAGCCTTGTCCCCAGTGGGGA	0.557													35	87					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123974921	123974921	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123974921G>A	uc001lfv.2	+	10	7659	c.7299G>A	c.(7297-7299)GTG>GTA	p.V2433V	TACC2_uc001lfw.2_Silent_p.V579V|TACC2_uc009xzx.2_Silent_p.V2388V|TACC2_uc010qtv.1_Silent_p.V2437V|TACC2_uc001lfx.2_Silent_p.V137V|TACC2_uc001lfy.2_Silent_p.V133V|TACC2_uc001lfz.2_Silent_p.V511V|TACC2_uc001lga.2_Silent_p.V511V|TACC2_uc009xzy.2_Silent_p.V523V|TACC2_uc001lgb.2_Silent_p.V468V|TACC2_uc010qtw.1_Silent_p.V528V	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2433						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CATTTAGGGTGAAAAAGTCGC	0.502													53	27					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123989891	123989891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123989891G>A	uc001lfv.2	+	16	8423	c.8063G>A	c.(8062-8064)CGG>CAG	p.R2688Q	TACC2_uc001lfw.2_Missense_Mutation_p.R834Q|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron|TACC2_uc001lfz.2_Missense_Mutation_p.R766Q|TACC2_uc001lga.2_Intron|TACC2_uc009xzy.2_Intron|TACC2_uc001lgb.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2688	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCCATCATGCGGATAGAAGCC	0.567													22	100					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123989949	123989949	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:123989949T>G	uc001lfv.2	+	16	8481	c.8121T>G	c.(8119-8121)GAT>GAG	p.D2707E	TACC2_uc001lfw.2_Missense_Mutation_p.D853E|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron|TACC2_uc001lfz.2_Missense_Mutation_p.D785E|TACC2_uc001lga.2_Intron|TACC2_uc009xzy.2_Intron|TACC2_uc001lgb.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2707						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCCACCAGGATGCCAAGGTAC	0.602													24	45					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124045676	124045676	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124045676C>T	uc001lgc.1	+	5	549	c.298C>T	c.(298-300)CAG>TAG	p.Q100*	BTBD16_uc001lgd.1_Nonsense_Mutation_p.Q99*	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	100										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCAGCTTTTTCAGTCTGAGAC	0.557													34	91					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124049455	124049455	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124049455C>T	uc001lgc.1	+	6	668	c.417C>T	c.(415-417)TCC>TCT	p.S139S	BTBD16_uc001lgd.1_Silent_p.S138S	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	139										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				AAGAAAAATCCCCTGCAAAGA	0.433													17	94					0	0	1	0	0
ARMS2	387715	broad.mit.edu	37	10	124214456	124214456	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124214456C>T	uc001lgi.2	+	1	278	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001099667	NP_001093137	P0C7Q2	ARMS2_HUMAN	age-related maculopathy susceptibility 2	71					retina homeostasis	mitochondrion|photoreceptor inner segment				ovary(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTGCTAAAATCCACACTGAGC	0.413													12	42					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124329690	124329690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124329690C>T	uc001lgk.1	+	3	210	c.104C>T	c.(103-105)CCC>CTC	p.P35L	DMBT1_uc001lgl.1_Missense_Mutation_p.P35L|DMBT1_uc001lgm.1_Missense_Mutation_p.P35L|DMBT1_uc009xzz.1_Missense_Mutation_p.P35L|DMBT1_uc010qtx.1_Missense_Mutation_p.P35L|DMBT1_uc009yaa.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	35					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCACTGATTCCCTCGGAGGTG	0.552													18	78					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124335982	124335983	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124335982_124335983CC>TT	uc001lgk.1	+	7	457_458	c.351_352CC>TT	c.(349-354)ATCCTA>ATTTTA	p.117_118IL>IL	DMBT1_uc001lgl.1_Silent_p.117_118IL>IL|DMBT1_uc001lgm.1_Silent_p.117_118IL>IL|DMBT1_uc009xzz.1_Silent_p.117_118IL>IL|DMBT1_uc010qtx.1_Silent_p.117_118IL>IL|DMBT1_uc009yaa.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	117_118	SRCR 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAGTGGAGATCCTATACCGAGG	0.564													45	110					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124380692	124380692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124380692G>A	uc001lgk.1	+	41	5123	c.5017G>A	c.(5017-5019)GAT>AAT	p.D1673N	DMBT1_uc001lgl.1_Missense_Mutation_p.D1663N|DMBT1_uc001lgm.1_Missense_Mutation_p.D1045N|DMBT1_uc009xzz.1_Missense_Mutation_p.D1673N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.D376N|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1673	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGACACCAATGATGCCAATGT	0.612													121	179					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124390643	124390643	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124390643C>T	uc001lgk.1	+	46	5911	c.5805C>T	c.(5803-5805)GCC>GCT	p.A1935A	DMBT1_uc001lgl.1_Silent_p.A1925A|DMBT1_uc001lgm.1_Silent_p.A1307A|DMBT1_uc009xzz.1_Silent_p.A1935A|DMBT1_uc010qtx.1_Silent_p.A655A|DMBT1_uc009yab.1_Silent_p.A638A|DMBT1_uc009yac.1_Silent_p.A229A	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1935	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CAGTTTCAGCCCTTGGAAATG	0.572													21	51					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124395546	124395546	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:124395546C>T	uc001lgk.1	+	50	6307	c.6201C>T	c.(6199-6201)TTC>TTT	p.F2067F	DMBT1_uc001lgl.1_Silent_p.F2057F|DMBT1_uc001lgm.1_Silent_p.F1439F|DMBT1_uc009xzz.1_Silent_p.F2066F|DMBT1_uc010qtx.1_Silent_p.F787F|DMBT1_uc009yab.1_Silent_p.F770F|DMBT1_uc009yac.1_Silent_p.F361F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2067	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TTGAAGTTTTCGATGGCCCCT	0.502													13	36					0	0	1	0	0
C10orf137	26098	broad.mit.edu	37	10	127438010	127438010	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:127438010C>T	uc001liq.1	+	22	3446	c.3153C>T	c.(3151-3153)CAC>CAT	p.H1051H	C10orf137_uc001lio.1_Silent_p.H1017H|C10orf137_uc001lip.1_Silent_p.H755H|C10orf137_uc001lis.1_Silent_p.H377H|C10orf137_uc001lit.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	1051					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GGAAACAACACCGGGTGCTGG	0.468													38	11					0	0	1	0	0
UROS	7390	broad.mit.edu	37	10	127484704	127484704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:127484704G>A	uc001liw.3	-	7	662	c.529C>T	c.(529-531)CAA>TAA	p.Q177*	UROS_uc001liv.3_Nonsense_Mutation_p.Q58*|UROS_uc010quh.1_RNA|UROS_uc001lix.3_Nonsense_Mutation_p.Q177*|UROS_uc001liy.3_RNA	NM_000375	NP_000366	P10746	HEM4_HUMAN	uroporphyrinogen III synthase	177					heme biosynthetic process|uroporphyrinogen III biosynthetic process	cytosol|mitochondrion	uroporphyrinogen-III synthase activity				0		all_lung(145;0.00756)|Lung NSC(174;0.0116)|Colorectal(57;0.0855)|all_neural(114;0.0937)|Breast(234;0.203)				AGGTTCCCTTGGATTCCTGGG	0.557													39	136					0	0	1	0	0
FAM196A	642938	broad.mit.edu	37	10	128952171	128952171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:128952171C>T	uc001lju.1	-	2	1242	c.1201G>A	c.(1201-1203)GGG>AGG	p.G401R	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Intron|FAM196A_uc001ljv.1_Missense_Mutation_p.G401R|FAM196A_uc009yap.1_Intron	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	401										ovary(2)	2						GTGTCTTGCCCCGTCCGATAT	0.438													8	30					0	0	1	0	0
DOCK1	1793	broad.mit.edu	37	10	129055604	129055604	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129055604C>T	uc001ljt.2	+	29	2956	c.2892C>T	c.(2890-2892)TTC>TTT	p.F964F	DOCK1_uc010qun.1_Silent_p.F985F	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	964					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TTCAGGATTTCCTAATGGAAA	0.353													3	9					0	0	1	0	0
FOXI2	399823	broad.mit.edu	37	10	129537220	129537220	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129537220C>T	uc009yas.2	+	2	948	c.948C>T	c.(946-948)ACC>ACT	p.T316T	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	316					epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				GGGAAGGGACCGAAGTTTGAA	0.682													5	26					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129859246	129859247	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129859246_129859247CT>TA	uc001lkb.2	+	8	834_835	c.555_556CT>TA	c.(553-558)CCCTGT>CCTAGT	p.C186S	PTPRE_uc009yat.2_Missense_Mutation_p.C197S|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Missense_Mutation_p.C186S|PTPRE_uc001lkd.2_Missense_Mutation_p.C128S|PTPRE_uc010quq.1_Missense_Mutation_p.C87S	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	186	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				ATGGAATTCCCTGTTCAGACTA	0.46													8	31					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129861438	129861438	+	Silent	SNP	G	A	A	rs148187282		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129861438G>A	uc001lkb.2	+	10	996	c.717G>A	c.(715-717)AGG>AGA	p.R239R	PTPRE_uc009yat.2_Silent_p.R250R|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.R239R|PTPRE_uc001lkd.2_Silent_p.R181R|PTPRE_uc010quq.1_Silent_p.R140R	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	239	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				TGAAAGAAAGGAAAGAGGTGA	0.502													12	23					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129904029	129904029	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129904029G>A	uc001lke.2	-	13	6270	c.6075C>T	c.(6073-6075)ACC>ACT	p.T2025T	MKI67_uc001lkf.2_Silent_p.T1665T|MKI67_uc009yav.1_Silent_p.T1600T|MKI67_uc009yaw.1_Silent_p.T1175T	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2025	16 X 122 AA approximate repeats.|9.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GTGTCTGTGTGGTCTTCCCTG	0.498													48	219					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129905334	129905334	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129905334G>A	uc001lke.2	-	13	4965	c.4770C>T	c.(4768-4770)GGC>GGT	p.G1590G	MKI67_uc001lkf.2_Silent_p.G1230G|MKI67_uc009yav.1_Silent_p.G1165G|MKI67_uc009yaw.1_Silent_p.G740G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1590	5.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GCTCTTTAAAGCCAGCCAGGT	0.488													98	62					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129905442	129905442	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:129905442A>G	uc001lke.2	-	13	4857	c.4662T>C	c.(4660-4662)TTT>TTC	p.F1554F	MKI67_uc001lkf.2_Silent_p.F1194F|MKI67_uc009yav.1_Silent_p.F1129F|MKI67_uc009yaw.1_Silent_p.F704F	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1554	5.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GAGTTCCCATAAATGCGTAGA	0.483													139	68					0	0	1	0	0
MGMT	4255	broad.mit.edu	37	10	131506243	131506243	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:131506243C>T	uc001lkh.2	+	3	329	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	70										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		ATGCCTATTTCCACCAGCCCG	0.602								Direct_reversal_of_damage					64	37					0	0	1	0	0
TCERG1L	256536	broad.mit.edu	37	10	133107539	133107539	+	Silent	SNP	C	T	T	rs148480002		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:133107539C>T	uc001lkp.2	-	2	452	c.366G>A	c.(364-366)CCG>CCA	p.P122P		NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	122										large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		GTCCTAGGGACGGAGAATGGC	0.532													27	26					0	0	1	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133967467	133967467	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:133967467G>A	uc001lkx.3	+	18	2187	c.2187G>A	c.(2185-2187)CGG>CGA	p.R729R	JAKMIP3_uc009yba.1_Silent_p.R166R	NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TGGACTACCGGAAACAGGCCT	0.627													13	48					0	0	1	0	0
C10orf93	255352	broad.mit.edu	37	10	134752115	134752115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:134752115C>T	uc001llt.1	-	5	590	c.514G>A	c.(514-516)GAG>AAG	p.E172K	C10orf93_uc001llu.2_Missense_Mutation_p.E172K	NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	172							binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		GCACGCCACTCCTTGTCTTCC	0.607													44	29					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135015131	135015131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135015131C>T	uc001llz.1	+	17	3117	c.3116C>T	c.(3115-3117)TCC>TTC	p.S1039F	KNDC1_uc001lma.1_Missense_Mutation_p.S974F|KNDC1_uc001lmb.1_Missense_Mutation_p.S451F	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1039					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCTCAGAGGTCCGTAAAAGCC	0.672													41	15					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135015204	135015204	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135015204G>A	uc001llz.1	+	17	3190	c.3189G>A	c.(3187-3189)GTG>GTA	p.V1063V	KNDC1_uc001lma.1_Silent_p.V998V|KNDC1_uc001lmb.1_Silent_p.V475V	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1063					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCTCAGACGTGGAGGCAGTGA	0.697													16	24					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135027620	135027620	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135027620C>T	uc001llz.1	+	26	4672	c.4671C>T	c.(4669-4671)ACC>ACT	p.T1557T		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1557	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CCAGCCACACCTCCAAGGTGG	0.597													10	29					0	0	1	0	0
VENTX	27287	broad.mit.edu	37	10	135053508	135053508	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135053508T>G	uc010quy.1	+	3	486	c.475T>G	c.(475-477)TTC>GTC	p.F159V		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	159					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		GCACAGCCCCTTCTCGGGGTC	0.577													33	22					0	0	1	0	0
PAOX	196743	broad.mit.edu	37	10	135195059	135195059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135195059C>T	uc001lmv.2	+	3	844	c.764C>T	c.(763-765)TCC>TTC	p.S255F	PAOX_uc001lmw.2_RNA|PAOX_uc001lmx.2_Missense_Mutation_p.S255F|PAOX_uc001lmy.2_Missense_Mutation_p.S255F|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_RNA|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_RNA	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	393					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		TGGAACGGGTCCTTCCAGGAG	0.587													13	37					0	0	1	0	0
SYCE1	93426	broad.mit.edu	37	10	135369312	135369312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135369312G>A	uc001lno.2	-	10	796	c.691C>T	c.(691-693)CTC>TTC	p.L231F	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.L103F|SYCE1_uc009ybn.2_Missense_Mutation_p.L231F|SYCE1_uc001lnn.2_Missense_Mutation_p.L195F	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	231	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TGGCTGCGGAGAAAGAGTCCC	0.637													33	12					0	0	1	0	0
FRG2B	441581	broad.mit.edu	37	10	135440219	135440219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:135440219G>A	uc010qvg.1	-	1	81	c.28C>T	c.(28-30)CTC>TTC	p.L10F		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	10						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GAGCAGTGGAGATCGGGGTCT	0.502													52	261					0	0	1	0	0
B4GALNT4	338707	broad.mit.edu	37	11	379694	379694	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:379694C>T	uc001lpb.2	+	15	2490	c.2481C>T	c.(2479-2481)ATC>ATT	p.I827I		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	827	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TTCACTTCATCGTGCCAGGTT	0.687													4	17					0	0	1	0	0
ANO9	338440	broad.mit.edu	37	11	428123	428123	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:428123G>A	uc001lpi.2	-	15	1384	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	ANO9_uc001lph.2_Silent_p.F126F|ANO9_uc010qvv.1_Silent_p.F289F	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	433	Helical; (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TGAGAGACGAGAAATGGGTGA	0.582													39	63					0	0	1	0	0
ANO9	338440	broad.mit.edu	37	11	430393	430393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:430393C>T	uc001lpi.2	-	8	635	c.550G>A	c.(550-552)GGG>AGG	p.G184R	ANO9_uc001lph.2_5'Flank|ANO9_uc010qvv.1_Missense_Mutation_p.G40R	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	184	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						ACCTTTTCCCCAAAGTAGTTC	0.473													16	17					0	0	1	0	0
LRRC56	115399	broad.mit.edu	37	11	540746	540747	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:540746_540747GG>AA	uc010qvz.1	+	4	567_568	c.62_63GG>AA	c.(61-63)CGG>CAA	p.R21Q		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	21										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTCCGGGTGCGGGAGCTGAGCT	0.634													7	33					0	0	1	0	0
LRRC56	115399	broad.mit.edu	37	11	551954	551954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:551954G>A	uc010qvz.1	+	11	1530	c.1025G>A	c.(1024-1026)AGG>AAG	p.R342K		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	342										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CGGGAGCGTAGGCACCAGTGC	0.687													7	30					0	0	1	0	0
RASSF7	8045	broad.mit.edu	37	11	562279	562279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:562279C>T	uc001lqc.2	+	3	360	c.325C>T	c.(325-327)CGT>TGT	p.R109C	C11orf35_uc001lpx.2_5'Flank|RASSF7_uc001lqa.2_Missense_Mutation_p.R109C|RASSF7_uc001lqb.2_Missense_Mutation_p.R109C|RASSF7_uc001lqd.2_Missense_Mutation_p.R109C	NM_003475	NP_003466	Q02833	RASF7_HUMAN	Ras association (RalGDS/AF-6) domain family	109					regulation of transcription, DNA-dependent|signal transduction	nucleus	DNA binding|protein binding			skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGCCTAATTCGTGCCAGCCT	0.672													8	29					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	608893	608893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:608893C>T	uc001lqe.2	+	14	3568	c.3437C>T	c.(3436-3438)CCA>CTA	p.P1146L	PHRF1_uc010qwc.1_Missense_Mutation_p.P1145L|PHRF1_uc010qwd.1_Missense_Mutation_p.P1144L|PHRF1_uc010qwe.1_Missense_Mutation_p.P1142L|PHRF1_uc009ybz.1_Missense_Mutation_p.P936L|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1146	Arg-rich.						RNA polymerase binding|zinc ion binding				0						CACGAGCGGCCAGACAGGAAG	0.692													9	16					0	0	1	0	0
CDHR5	53841	broad.mit.edu	37	11	618056	618056	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:618056G>A	uc001lqj.2	-	14	2121	c.2016C>T	c.(2014-2016)GGC>GGT	p.G672G	IRF7_uc009ycb.2_5'Flank|IRF7_uc010qwf.1_5'Flank|IRF7_uc001lqf.2_5'Flank|IRF7_uc010qwg.1_5'Flank|IRF7_uc001lqg.2_5'Flank|IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Silent_p.G478G|CDHR5_uc009ycc.2_Silent_p.G506G|CDHR5_uc009ycd.2_Silent_p.G666G|CDHR5_uc001lql.2_Silent_p.G672G	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	672	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CCAGCACCCCGCCCAGGGCCG	0.652													7	37					0	0	1	0	0
CEND1	51286	broad.mit.edu	37	11	788242	788242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:788242C>T	uc001lrh.1	-	2	514	c.335G>A	c.(334-336)GGG>GAG	p.G112E		NM_016564	NP_057648	Q8N111	CEND_HUMAN	cell cycle exit and neuronal differentiation 1	112	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;6.27e-26)|Epithelial(43;4.84e-25)|OV - Ovarian serous cystadenocarcinoma(40;2.72e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACCTCGGCCCCCAGGCCCCCC	0.692													6	24					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1016812	1016812	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1016812T>C	uc001lsw.2	-	31	6040	c.5989A>G	c.(5989-5991)ACC>GCC	p.T1997A		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1997	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGTGATGGGGTTGGATAGGTA	0.542													17	811					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1016837	1016837	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1016837G>A	uc001lsw.2	-	31	6015	c.5964C>T	c.(5962-5964)TCC>TCT	p.S1988S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1988	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGTCTGGAAGGATGTTGCAG	0.572													10	783					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1029144	1029144	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1029144G>A	uc001lsw.2	-	11	1333	c.1282C>T	c.(1282-1284)CAG>TAG	p.Q428*		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	428	VWFD 2.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCGGGAAGCTGGGGGCTCTGC	0.687													10	12					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1095663	1095663	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1095663G>A	uc001lsx.1	+	36	13288	c.13261_splice	c.e36-1	p.E4421_splice		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor							inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCCGTCCCCAGGAGAACGAGA	0.657													4	11					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1101122	1101122	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1101122C>T	uc001lsx.1	+	44	14634	c.14607C>T	c.(14605-14607)CTC>CTT	p.L4869L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4869	VWFC 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCACCTACCTCGCCACGGAGG	0.617													15	67					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1162206	1162206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1162206G>A	uc009ycr.1	+	16	1841	c.1715G>A	c.(1714-1716)GGG>GAG	p.G572E		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	563	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGTCTCTGTGGGAACTTCAAC	0.647													3	11					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1267073	1267073	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1267073G>T	uc009ycr.1	+	49	10838	c.10712G>T	c.(10711-10713)GGG>GTG	p.G3571V	MUC5B_uc001ltb.2_Missense_Mutation_p.G2991V	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2988	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCCACTCCAGGGACGACCTGG	0.632													42	109					2.58029e-29	2.61641e-29	1	1	0
MUC5B	727897	broad.mit.edu	37	11	1269833	1269833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1269833C>T	uc009ycr.1	+	50	13433	c.13307C>T	c.(13306-13308)TCC>TTC	p.S4436F	MUC5B_uc001ltb.2_Missense_Mutation_p.S3911F	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3908	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCCCCTCCTCCGTCCCGGGG	0.647													5	30					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1274170	1274170	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1274170G>A	uc009ycr.1	+	54	16269	c.16143G>A	c.(16141-16143)TCG>TCA	p.S5381S	MUC5B_uc001ltb.2_Silent_p.S5062S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5059					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCAAAGTGTCGGACCCGAGCC	0.647													7	20					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1279403	1279403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1279403G>A	uc009ycr.1	+	64	17662	c.17536G>A	c.(17536-17538)GAG>AAG	p.E5846K	MUC5B_uc001ltb.2_Missense_Mutation_p.E5512K	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5509					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CACCCAGGAGGAGGGCGACTG	0.697													4	12					0	0	1	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1605732	1605732	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1605732C>A	uc001ltu.1	-	1	782	c.748G>T	c.(748-750)GGG>TGG	p.G250W	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	250	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CAGGATGACCCACAGCCTGAG	0.592													55	58					3.4597e-24	3.50615e-24	1	1	0
TNNI2	7136	broad.mit.edu	37	11	1862278	1862278	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:1862278G>A	uc010qxe.1	+	5	316	c.294G>A	c.(292-294)CAG>CAA	p.Q98Q	TNNI2_uc010qxc.1_Silent_p.Q96Q|TNNI2_uc010qxd.1_Silent_p.Q96Q	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	98	Involved in binding TNC and actin.				muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACATGAACCAGAAGCTATTTG	0.567													3	23					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3700795	3700795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:3700795G>A	uc001lyh.2	-	31	5353	c.5062C>T	c.(5062-5064)CAT>TAT	p.H1688Y	NUP98_uc001lyi.2_Missense_Mutation_p.H1614Y|NUP98_uc001lyg.2_Missense_Mutation_p.H653Y	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1705					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		TGCTGTATATGGCGGAGCATT	0.468			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								9	37					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3723945	3723945	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:3723945A>G	uc001lyh.2	-	23	3551	c.3260T>C	c.(3259-3261)GTT>GCT	p.V1087A	NUP98_uc001lyi.2_Missense_Mutation_p.V1087A|NUP98_uc001lyg.2_Intron	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1104					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		TTTCAACGGAACCTCAGGGGC	0.522			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								20	33					0	0	1	0	0
OR52K2	119774	broad.mit.edu	37	11	4470696	4470696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4470696G>A	uc001lyz.1	+	1	127	c.127G>A	c.(127-129)GGA>AGA	p.G43R		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G43E(1)		skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCCTGCTTGGAAACTGCAC	0.532													42	72					0	0	1	0	0
OR52K2	119774	broad.mit.edu	37	11	4470843	4470843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4470843C>T	uc001lyz.1	+	1	274	c.274C>T	c.(274-276)CGG>TGG	p.R92W		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTCAGGGATCGGGAGATAAA	0.527													19	60					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566873	4566873	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4566873C>T	uc010qyf.1	+	1	453	c.453C>T	c.(451-453)CTC>CTT	p.L151L		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGTTTCTCTCCTCCGGGGTG	0.527													36	52					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790355	4790355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4790355G>A	uc010qyl.1	-	1	793	c.793C>T	c.(793-795)CGC>TGC	p.R265C		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	265						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CGACCATAGCGATACACCAAG	0.512													12	43					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790629	4790629	+	Missense_Mutation	SNP	C	T	T	rs149687850		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4790629C>T	uc010qyl.1	-	1	519	c.519G>A	c.(517-519)ATG>ATA	p.M173I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	173						integral to membrane	olfactory receptor activity	p.M173I(1)		ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AAAGGGCATTCATTCTACAGA	0.383													16	45					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825533	4825533	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4825533G>A	uc010qym.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCCACAACTGGAAACTCTCCA	0.502													8	28					0	0	1	0	0
OR51F2	119694	broad.mit.edu	37	11	4842823	4842823	+	Missense_Mutation	SNP	C	T	T	rs113742153	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4842823C>T	uc010qyn.1	+	1	208	c.208C>T	c.(208-210)CAT>TAT	p.H70Y		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACGGAGCCTCCATAAGCCTAT	0.473													90	101					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4928768	4928768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4928768G>A	uc010qyq.1	+	1	169	c.169G>A	c.(169-171)GAG>AAG	p.E57K		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCGCTTCATGAGCCCATGTA	0.488													52	61					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4929509	4929509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4929509G>A	uc010qyq.1	+	1	910	c.910G>A	c.(910-912)GGG>AGG	p.G304R		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAGATCTTGGGGAAGTTGCT	0.398													15	51					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936556	4936556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4936556G>A	uc001lzr.1	-	1	338	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCGAGGAAGGAGAAGCAGTG	0.493													9	18					0	0	1	0	0
OR51G1	79324	broad.mit.edu	37	11	4945021	4945021	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4945021G>A	uc010qyr.1	-	1	549	c.549C>T	c.(547-549)CAC>CAT	p.H183H		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGATCTCCAGGTGAAGACAAT	0.527													9	46					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967664	4967664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4967664G>A	uc010qys.1	-	1	667	c.667C>T	c.(667-669)CTC>TTC	p.L223F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGTCTTGAGGATCAGGGTG	0.433													16	57					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967853	4967853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:4967853G>A	uc010qys.1	-	1	478	c.478C>T	c.(478-480)CCC>TCC	p.P160S		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAAGGGAAGGGAAGAACCAGG	0.438													79	199					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5009489	5009489	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5009489C>T	uc001lzv.2	+	1	66	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	16					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCTGGTGTTTCGCCGTTCCAG	0.502											OREG0003716	type=REGULATORY REGION|Gene=MMP26|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	29	110					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5009529	5009529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5009529G>A	uc001lzv.2	+	1	106	c.88G>A	c.(88-90)GAC>AAC	p.D30N		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	30					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TAAAGGATGGGACTTTGTTGA	0.448													22	99					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5020377	5020377	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5020377C>T	uc010qyu.1	+	1	165	c.165C>T	c.(163-165)TCC>TCT	p.S55S		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGATAGAATCCTCTCTCCATC	0.433													25	83					0	0	1	0	0
OR52J3	119679	broad.mit.edu	37	11	5068652	5068652	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5068652G>A	uc010qyv.1	+	1	897	c.897G>A	c.(895-897)CAG>CAA	p.Q299Q		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGACCAAACAGATTCGAGAAC	0.378													14	41					0	0	1	0	0
OR52E2	119678	broad.mit.edu	37	11	5079889	5079889	+	Silent	SNP	C	T	T	rs148031312		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5079889C>T	uc010qyw.1	-	1	969	c.969G>A	c.(967-969)ACG>ACA	p.T323T		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		TTCAGAACCTCGTATGTATTA	0.318													22	23					0	0	1	0	0
OR52A4	390053	broad.mit.edu	37	11	5142675	5142675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5142675C>T	uc001lzz.1	-	1	134	c.134G>A	c.(133-135)GGA>GAA	p.G45E	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TAGAGAATTTCCAATCAGAGC	0.433													26	67					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153503	5153503	+	Missense_Mutation	SNP	G	A	A	rs143161168		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5153503G>A	uc010qyx.1	-	1	370	c.370C>T	c.(370-372)CGC>TGC	p.R124C		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		GCCACATAGCGATCCAGGGCC	0.468													18	23					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153779	5153779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5153779G>A	uc010qyx.1	-	1	94	c.94C>T	c.(94-96)CCT>TCT	p.P32S		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		GCAGAGAAAGGAATCCCAATC	0.388													11	41					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5173160	5173160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5173160C>T	uc010qyy.1	-	1	440	c.440G>A	c.(439-441)GGA>GAA	p.G147E		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACCATAGTTCCTATCTGAAT	0.488													19	44					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221857	5221857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5221857C>T	uc010qyz.1	-	1	74	c.74G>A	c.(73-75)GGA>GAA	p.G25E		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCAGAAAATCCAGTGAGAAG	0.438													16	62					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5247821	5247821	+	Missense_Mutation	SNP	G	A	A	rs34692941		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5247821G>A	uc001mae.1	-	2	351	c.301C>T	c.(301-303)CCT>TCT	p.P101S		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	101			P -> L (in Brigham; O(2) affinity up).|P -> R (in New Mexico).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	AAGTTCTCAGGATCCACGTGC	0.502									Sickle_Cell_Trait				8	56					0	0	1	0	0
HBD	3045	broad.mit.edu	37	11	5255642	5255642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5255642C>T	uc001maf.1	-	1	217	c.22G>A	c.(22-24)GAG>AAG	p.E8K		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	8					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGTCTTCTCCTCAGGAGTC	0.502													18	65					0	0	1	0	0
HBE1	3046	broad.mit.edu	37	11	5290833	5290833	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5290833G>A	uc001mal.1	-	2	419	c.166C>T	c.(166-168)CTG>TTG	p.L56L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Silent_p.L56L	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	56					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGTTGCCCAGGATGGCAGAG	0.488													23	71					0	0	1	0	0
OR51B4	79339	broad.mit.edu	37	11	5322321	5322321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5322321G>A	uc010qza.1	-	1	856	c.856C>T	c.(856-858)CCT>TCT	p.P286S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAAATGATAGGATTCACGAAT	0.428													13	36					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5344709	5344709	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5344709G>A	uc001mao.1	-	1	874	c.819C>T	c.(817-819)ATC>ATT	p.I273I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTAACTCATGATAATGTGGA	0.378													33	27					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5345040	5345040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5345040G>A	uc001mao.1	-	1	543	c.488C>T	c.(487-489)TCA>TTA	p.S163L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATATGAAAATGAAAAAAGACG	0.398													23	27					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364465	5364465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5364465G>A	uc001map.1	-	1	290	c.290C>T	c.(289-291)TCC>TTC	p.S97F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.S97F	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTAGGCCTGGGAAAAGCAGGC	0.547													8	36					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364668	5364668	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5364668G>A	uc001map.1	-	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Silent_p.F29F	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATGAACAAGAAAAATACGG	0.448													16	19					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5372845	5372845	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5372845A>G	uc010qzb.1	+	1	108	c.108A>G	c.(106-108)ATA>ATG	p.I36M	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATCTCCATACTTCTTGGCA	0.463													25	32					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373381	5373381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5373381C>T	uc010qzb.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTTTTTCTCCTACATTTTG	0.453													17	60					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373574	5373574	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5373574C>T	uc010qzb.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATCCACTTCCTTTTCCCAC	0.393													46	63					0	0	1	0	0
OR51M1	390059	broad.mit.edu	37	11	5410717	5410717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5410717C>T	uc010qzc.1	+	1	89	c.89C>T	c.(88-90)CCT>CTT	p.P30L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	30						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCAGCTTTCCTGGATTGGAA	0.413													40	124					0	0	1	0	0
OR51M1	390059	broad.mit.edu	37	11	5411319	5411319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5411319G>A	uc010qzc.1	+	1	691	c.691G>A	c.(691-693)GGA>AGA	p.G231R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	231						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGTCCTATGGACTCATCCT	0.532													20	58					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443499	5443499	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5443499G>A	uc010qzd.1	+	1	69	c.69G>A	c.(67-69)GAG>GAA	p.E23E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGATTTGAGGCCTCCCACA	0.507													39	127					0	0	1	0	0
OR51I1	390063	broad.mit.edu	37	11	5462260	5462260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5462260G>A	uc010qze.1	-	1	485	c.485C>T	c.(484-486)CCT>CTT	p.P162L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCACAAAAGGGAAAGGGAA	0.463													31	39					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510223	5510223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5510223C>T	uc010qzg.1	+	1	287	c.287C>T	c.(286-288)TCC>TTC	p.S96F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGAGATTTCCTTTGGTGGA	0.498													33	46					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510314	5510314	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5510314T>C	uc010qzg.1	+	1	378	c.378T>C	c.(376-378)TAT>TAC	p.Y126Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGATAGGTATGTGGCTATCT	0.453													38	115					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510595	5510595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5510595C>T	uc010qzg.1	+	1	659	c.659C>T	c.(658-660)TCC>TTC	p.S220F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	220	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTGCCATTTCCTATGGCTTT	0.498													87	93					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510608	5510608	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5510608C>T	uc010qzg.1	+	1	672	c.672C>T	c.(670-672)ATC>ATT	p.I224I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGGCTTTATCCTCCATGCAG	0.488													30	139					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529724	5529724	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5529724G>A	uc001may.1	-	2	1151	c.1065C>T	c.(1063-1065)TCC>TCT	p.S355S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	355										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGTTCCTAGGGACTGGGGGT	0.493													45	143					0	0	1	0	0
OR52H1	390067	broad.mit.edu	37	11	5566080	5566080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5566080G>A	uc010qzh.1	-	1	674	c.674C>T	c.(673-675)TCC>TTC	p.S225F	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	225	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGTGCGTAGGAAACAGCAAT	0.512													12	55					0	0	1	0	0
OR52B6	340980	broad.mit.edu	37	11	5602771	5602771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5602771C>T	uc010qzi.1	+	1	665	c.665C>T	c.(664-666)GCT>GTT	p.A222V	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGGCAGCTGCTCTTCTCTCC	0.483													36	135					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5655114	5655114	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5655114G>A	uc001mbf.2	+	9	1810	c.1566G>A	c.(1564-1566)GAG>GAA	p.E522E	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Silent_p.E168E|TRIM34_uc009yeq.2_5'UTR|TRIM34_uc001mbi.2_Silent_p.E168E|TRIM34_uc001mbj.2_Silent_p.E168E	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	522						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		TCAGAGAAGAGAAAACTTCCT	0.473													10	32					0	0	1	0	0
TRIM22	10346	broad.mit.edu	37	11	5730836	5730836	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5730836G>A	uc001mbr.2	+	8	1732	c.1455G>A	c.(1453-1455)TGG>TGA	p.W485*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Nonsense_Mutation_p.W481*|TRIM22_uc010qzm.1_Nonsense_Mutation_p.W313*|TRIM22_uc009yeu.2_Nonsense_Mutation_p.W296*|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	485	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		TCAATCCTTGGAACTGCCTAG	0.478													28	151					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5757749	5757749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5757749G>A	uc001mbt.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.M1I|OR56B1_uc009yev.1_Missense_Mutation_p.M1I	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GTTGAATCATGAATCATATGT	0.388													16	61					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5758290	5758290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:5758290G>A	uc001mbt.1	+	1	544	c.544G>A	c.(544-546)GAA>AAA	p.E182K	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.E182K|OR56B1_uc009yev.1_Missense_Mutation_p.E182K	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		CTCCAAGAATGAAATTGAACA	0.483													24	38					0	0	1	0	0
OR52L1	338751	broad.mit.edu	37	11	6007921	6007921	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6007921G>A	uc001mcd.2	-	1	295	c.240C>T	c.(238-240)TTC>TTT	p.F80F		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	80	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCATGGACAGGAAGAGGTACA	0.537													7	32					0	0	1	0	0
OR56A1	120796	broad.mit.edu	37	11	6048009	6048009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6048009C>T	uc010qzw.1	-	1	926	c.926G>A	c.(925-927)GGA>GAA	p.G309E		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCTGAATTCCCTGTTTTAT	0.448													15	38					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6190745	6190745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6190745G>A	uc010qzy.1	-	1	812	c.812C>T	c.(811-813)CCT>CTT	p.P271L		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACATGTTGAGGAATATTACG	0.458													28	27					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6191490	6191490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6191490C>T	uc010qzy.1	-	1	67	c.67G>A	c.(67-69)GAG>AAG	p.E23K		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGATAAGCCTCCAACCCAGGG	0.443													21	38					0	0	1	0	0
CCKBR	887	broad.mit.edu	37	11	6290975	6290975	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6290975C>T	uc001mcp.2	+	2	421	c.228C>T	c.(226-228)ATC>ATT	p.I76I	CCKBR_uc001mcq.2_Silent_p.I4I|CCKBR_uc001mcr.2_Silent_p.I76I|CCKBR_uc001mcs.2_Silent_p.I76I	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	76	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TGCTCATCATCGTGGTCCTGG	0.552													21	83					0	0	1	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806947	6806947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6806947C>T	uc001mer.1	+	1	679	c.679C>T	c.(679-681)CAT>TAT	p.H227Y		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CACTGTGCTCCATATGCCATC	0.478													35	44					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867366	6867366	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6867366C>T	uc001met.1	+	1	453	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTTCCTGGTTCCCAGGCTTTC	0.542													62	73					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891644	6891644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6891644G>A	uc001meu.1	+	1	659	c.659G>A	c.(658-660)GGG>GAG	p.G220E		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAGCTAAAGGGAAGAATAAA	0.433													35	123					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891737	6891737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6891737C>T	uc001meu.1	+	1	752	c.752C>T	c.(751-753)TCA>TTA	p.S251L		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	251	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CGGCCTAAATCAAATAATTCA	0.418													59	68					0	0	1	0	0
OR10A4	283297	broad.mit.edu	37	11	6898226	6898226	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6898226G>A	uc010rat.1	+	1	348	c.348G>A	c.(346-348)CTG>CTA	p.L116L		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCTGCCTCCTGGCCACCATGG	0.542													11	57					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913368	6913368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:6913368G>A	uc010rau.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCAACATAGCGATCATAGGAC	0.483													33	39					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7021886	7021886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7021886G>A	uc001mfa.2	-	3	1331	c.1028C>T	c.(1027-1029)TCA>TTA	p.S343L	ZNF214_uc010ray.1_Missense_Mutation_p.S343L|ZNF214_uc009yfh.1_Missense_Mutation_p.S343L	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	343	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		GTGAAGTAATGAATTTCTACT	0.363													18	56					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7022597	7022597	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7022597C>T	uc001mfa.2	-	3	620	c.317G>A	c.(316-318)TGG>TAG	p.W106*	ZNF214_uc010ray.1_Nonsense_Mutation_p.W106*|ZNF214_uc009yfh.1_Nonsense_Mutation_p.W106*	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	106					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		GAGTATTAACCATTCCTGACA	0.423													88	300					0	0	1	0	0
ZNF214	7761	broad.mit.edu	37	11	7022746	7022746	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7022746G>A	uc001mfa.2	-	3	471	c.168C>T	c.(166-168)TTC>TTT	p.F56F	ZNF214_uc010ray.1_Silent_p.F56F|ZNF214_uc009yfh.1_Silent_p.F56F	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	56	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		CTAAGTATCTGAATTTTTCTT	0.373													25	93					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7064763	7064763	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7064763C>T	uc001mfb.1	+	4	1829	c.1506C>T	c.(1504-1506)AAC>AAT	p.N502N		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	502					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AAGCTGGGAACCCTTCCTGCC	0.418													15	73					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7064875	7064875	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7064875C>T	uc001mfb.1	+	4	1941	c.1618C>T	c.(1618-1620)CGA>TGA	p.R540*		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	540					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GAATGAAGATCGAGTAAAACA	0.348													33	26					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111489	7111489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7111489G>A	uc001mfc.2	+	1	1325	c.1138G>A	c.(1138-1140)GGA>AGA	p.G380R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	380	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGCCGTCTAGGAGGCCGCTT	0.572													4	11					0	0	1	0	0
OVCH2	341277	broad.mit.edu	37	11	7720305	7720305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7720305C>T	uc010rbf.1	-	8	917	c.917G>A	c.(916-918)AGC>AAC	p.S306N		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		ACCTCTGGAGCTCTTTCTCCG	0.463													12	8					0	0	1	0	0
OR5P3	120066	broad.mit.edu	37	11	7846844	7846844	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7846844G>A	uc010rbg.1	-	1	676	c.676C>T	c.(676-678)CTG>TTG	p.L226L		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGCATCTTCAGGATGGTGATG	0.463													18	56					0	0	1	0	0
OR10A6	390093	broad.mit.edu	37	11	7949407	7949407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:7949407G>A	uc010rbh.1	-	1	803	c.803C>T	c.(802-804)CCG>CTG	p.P268L		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTTGGTTTCCGGTGAGTAGCC	0.453													11	52					0	0	1	0	0
TUB	7275	broad.mit.edu	37	11	8122132	8122132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:8122132C>T	uc001mga.2	+	10	1348	c.1199C>T	c.(1198-1200)TCT>TTT	p.S400F	TUB_uc010rbk.1_Missense_Mutation_p.S406F|TUB_uc001mfy.2_Missense_Mutation_p.S455F	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	400					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		GAGAGAGTCTCTATCCGCCCC	0.537													9	36					0	0	1	0	0
RIC3	79608	broad.mit.edu	37	11	8148274	8148274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:8148274C>T	uc001mgd.2	-	5	656	c.602G>A	c.(601-603)GGA>GAA	p.G201E	RIC3_uc001mgb.2_Missense_Mutation_p.G39E|RIC3_uc001mgc.2_Missense_Mutation_p.G200E|RIC3_uc001mge.2_Intron|RIC3_uc010rbl.1_Missense_Mutation_p.G151E|RIC3_uc010rbm.1_Missense_Mutation_p.G229E|RIC3_uc009yfm.2_Intron|RIC3_uc009yfn.2_Missense_Mutation_p.G4E	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	201	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		AATGAATTTTCCTTCTTTCAT	0.433													21	34					0	0	1	0	0
C11orf16	56673	broad.mit.edu	37	11	8942929	8942930	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:8942929_8942930CC>TT	uc001mhb.3	-	6	1461_1462	c.1337_1338GG>AA	c.(1336-1338)GGG>GAA	p.G446E	C11orf16_uc001mhc.3_Intron	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	446										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		GTTCAGCTTCCCCTGGCGGGGT	0.52													23	79					0	0	1	0	0
TMEM41B	440026	broad.mit.edu	37	11	9305015	9305015	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:9305015G>A	uc001mhm.2	-	7	1140	c.832C>T	c.(832-834)CTG>TTG	p.L278L	TMEM41B_uc001mhn.1_Silent_p.L278L	NM_015012	NP_055827	Q5BJD5	TM41B_HUMAN	transmembrane protein 41B isoform 1	278	Helical; (Potential).					integral to membrane					0				all cancers(16;9.96e-08)|Epithelial(150;4.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0972)		ATGGCTGGCAGAATAGAAAGA	0.363													12	18					0	0	1	0	0
ZNF143	7702	broad.mit.edu	37	11	9492905	9492905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:9492905C>T	uc001mhr.2	+	2	168	c.50C>T	c.(49-51)CCT>CTT	p.P17L	ZNF143_uc009yfu.2_Missense_Mutation_p.P17L|ZNF143_uc010rby.1_Missense_Mutation_p.P17L	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	17					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		ACAGAGTTTCCTGGAGGAGGG	0.443													22	68					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10503755	10503755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:10503755C>T	uc001mio.1	+	4	907	c.572C>T	c.(571-573)CCG>CTG	p.P191L	AMPD3_uc010rbz.1_Missense_Mutation_p.P32L|AMPD3_uc001min.1_Missense_Mutation_p.P200L|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfx.1_Missense_Mutation_p.P191L|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.P198L|AMPD3_uc009yfy.2_Missense_Mutation_p.P191L	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	191					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		ACTGCACCTCCGGAAGAGGGC	0.607													35	40					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10508849	10508849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:10508849G>A	uc001mio.1	+	6	1212	c.877G>A	c.(877-879)GAA>AAA	p.E293K	AMPD3_uc010rbz.1_Missense_Mutation_p.E134K|AMPD3_uc001min.1_Missense_Mutation_p.E302K|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.E300K|AMPD3_uc009yfy.2_Missense_Mutation_p.E293K	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	293					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GATGTTAAACGAAATGTCCGA	0.498													61	73					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10521693	10521693	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:10521693A>G	uc001mio.1	+	11	1953	c.1618A>G	c.(1618-1620)AAG>GAG	p.K540E	AMPD3_uc010rbz.1_Missense_Mutation_p.K381E|AMPD3_uc001min.1_Missense_Mutation_p.K549E|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.K547E|AMPD3_uc009yfy.2_Missense_Mutation_p.K540E	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	540					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GTTTTCCGACAAGAGCCCAAA	0.567													24	37					0	0	1	0	0
LYVE1	10894	broad.mit.edu	37	11	10582227	10582227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:10582227G>A	uc001miv.2	-	4	804	c.518C>T	c.(517-519)TCC>TTC	p.S173F	uc001miu.2_Intron|LYVE1_uc010rca.1_Missense_Mutation_p.S69F	NM_006691	NP_006682	Q9Y5Y7	LYVE1_HUMAN	lymphatic vessel endothelial hyaluronan receptor	173	Extracellular (Potential).				anatomical structure morphogenesis|cell-matrix adhesion|cellular component movement|response to wounding|transport	integral to plasma membrane|membrane fraction				central_nervous_system(1)|skin(1)	2				all cancers(16;7.22e-08)|Epithelial(150;1.03e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0609)		AGAGTAAGGGGATGCCACCGA	0.413													23	87					0	0	1	0	0
CSNK2A1P	283106	broad.mit.edu	37	11	11373733	11373733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:11373733G>A	uc001mjp.2	-	1	1172	c.934C>T	c.(934-936)CGG>TGG	p.R312W	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						GCAGTAAGCCGTGACTGGTGG	0.537													9	62					0	0	1	0	0
USP47	55031	broad.mit.edu	37	11	11976465	11976465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:11976465C>T	uc001mjs.2	+	26	4499	c.3736C>T	c.(3736-3738)CCT>TCT	p.P1246S	USP47_uc001mjr.2_Missense_Mutation_p.P1178S|USP47_uc009ygi.2_Missense_Mutation_p.P48S	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	1266					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		CAGTGGGATTCCTTTGGATGA	0.313													20	31					0	0	1	0	0
DKK3	27122	broad.mit.edu	37	11	12023884	12023884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:12023884C>T	uc001mju.2	-	2	371	c.314G>A	c.(313-315)GGA>GAA	p.G105E	DKK3_uc010rcf.1_Missense_Mutation_p.G105E|DKK3_uc001mjv.2_Missense_Mutation_p.G105E|DKK3_uc001mjw.2_Missense_Mutation_p.G105E|DKK3_uc010rcg.1_Missense_Mutation_p.G105E|DKK3_uc001mjx.2_Missense_Mutation_p.G105E	NM_001018057	NP_001018067	Q9UBP4	DKK3_HUMAN	dickkopf homolog 3 precursor	105					adrenal gland development|anatomical structure morphogenesis|negative regulation of aldosterone biosynthetic process|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cortisol biosynthetic process|negative regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	extracellular space				breast(1)	1				Epithelial(150;0.000502)		GGTATTATTTCCAACCTTCGT	0.463													16	40					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12277206	12277206	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:12277206T>G	uc001mjz.2	+	23	3152	c.2864T>G	c.(2863-2865)GTG>GGG	p.V955G	MICAL2_uc010rch.1_Missense_Mutation_p.V765G|MICAL2_uc001mka.2_Missense_Mutation_p.V955G|MICAL2_uc010rci.1_Missense_Mutation_p.V934G|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Missense_Mutation_p.V167G|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	955						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GTAGGGAAAGTGTCCAGCGGA	0.537													9	14					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12315464	12315464	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:12315464G>A	uc001mkg.1	+	3	777	c.486G>A	c.(484-486)AGG>AGA	p.R162R		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	162					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CTGGAGCCAGGAAGGAAGAAG	0.552													25	37					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16812746	16812746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:16812746C>T	uc001mmo.2	-	20	2761	c.2746G>A	c.(2746-2748)GAA>AAA	p.E916K	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E917K|PLEKHA7_uc001mmm.2_Missense_Mutation_p.E19K|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E491K|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E625K	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	916	Pro-rich.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						GCTTCATCTTCCTGCTGAGAA	0.617													10	21					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16822595	16822595	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:16822595G>A	uc001mmo.2	-	17	2350	c.2335C>T	c.(2335-2337)CTG>TTG	p.L779L	PLEKHA7_uc010rcu.1_Silent_p.L779L|PLEKHA7_uc010rcv.1_Silent_p.L353L|PLEKHA7_uc001mmn.2_Silent_p.L487L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	779	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TCCAACTTCAGGTATTCGTTC	0.498													45	145					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17464811	17464811	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:17464811A>T	uc001mnc.2	-	9	1507	c.1381T>A	c.(1381-1383)TTA>ATA	p.L461I	ABCC8_uc010rcy.1_Missense_Mutation_p.L460I	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	461	Helical; Name=9; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCTCCAATTAAGGCACTGACT	0.547													134	165					0	0	1	0	0
USH1C	10083	broad.mit.edu	37	11	17538995	17538995	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:17538995C>G	uc001mnf.2	-	15	1346	c.1237G>C	c.(1237-1239)GAG>CAG	p.E413Q	USH1C_uc001mne.2_Intron|USH1C_uc009yhb.2_Missense_Mutation_p.E394Q|USH1C_uc001mng.2_Intron|USH1C_uc001mnd.2_Missense_Mutation_p.E377Q	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	413					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TCTGCGGGCTCGAGCTCAGGT	0.617													3	6					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159579	18159579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:18159579C>T	uc001mnu.2	+	3	1191	c.830C>T	c.(829-831)TCC>TTC	p.S277F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	277	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTCGTGGGCTCCTTTAGGCAG	0.507													14	52					0	0	1	0	0
LOC494141	494141	broad.mit.edu	37	11	18231770	18231770	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:18231770G>A	uc009yhh.2	+	2		c.794G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						TTCTTTTCCAGAATGGACTCA	0.428													22	30					0	0	1	0	0
TSG101	7251	broad.mit.edu	37	11	18528467	18528467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:18528467G>A	uc001mor.2	-	6	611	c.485C>T	c.(484-486)TCC>TTC	p.S162F	TSG101_uc001mos.1_Missense_Mutation_p.S110F|TSG101_uc009yhs.1_RNA	NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	162	Interaction with CEP55.			Missing: Abolishes interaction with CEP55 and midbody localization; no effect on interaction with ESCRT-I proteins, PDCD6IP and viral proteins.	cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						TGGCATGTAGGAAGCTAAAAA	0.368													10	53					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955401	18955401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:18955401C>T	uc001mpg.2	-	1	1149	c.931G>A	c.(931-933)GAA>AAA	p.E311K		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	311	Cytoplasmic (Potential).			EEI -> QET (in Ref. 2; AAL86880).	acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TCCAGGATTTCCTCAGGAAGC	0.567													21	42					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	19970322	19970322	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:19970322C>T	uc010rdm.1	+	11	2771	c.2410C>T	c.(2410-2412)CTG>TTG	p.L804L	NAV2_uc001mpp.2_Silent_p.L717L|NAV2_uc001mpr.3_Silent_p.L781L	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	804						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GCCCACACCTCTGTCCTGGAG	0.577													15	17					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20065598	20065598	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:20065598C>T	uc010rdm.1	+	14	3409	c.3048C>T	c.(3046-3048)GAC>GAT	p.D1016D	NAV2_uc001mpp.2_Silent_p.D929D|NAV2_uc001mpr.3_Silent_p.D993D|NAV2_uc001mpt.2_Silent_p.D79D|NAV2_uc009yhx.2_Silent_p.D79D|NAV2_uc009yhy.1_Translation_Start_Site	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1016						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						AGAAATCAGACGGAGGCTCAG	0.517													18	71					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20177792	20177792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:20177792C>T	uc001mpw.1	-	4	1117	c.1117G>A	c.(1117-1119)GGC>AGC	p.G373S		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	334	Poly-Glu.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTTCCTCGCCCTCCTCTTCC	0.622													57	170					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20668406	20668406	+	Missense_Mutation	SNP	G	A	A	rs148559046		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:20668406G>A	uc001mqd.2	+	14	2269	c.1996G>A	c.(1996-1998)GAG>AAG	p.E666K	SLC6A5_uc009yic.2_Missense_Mutation_p.E431K	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	666					synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TGAAGATATAGAGATGATGAT	0.448													10	38					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	20699541	20699541	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:20699541A>G	uc001mqe.2	+	2	272	c.119A>G	c.(118-120)AAC>AGC	p.N40S	NELL1_uc001mqf.2_Missense_Mutation_p.N40S|NELL1_uc009yid.2_Missense_Mutation_p.N68S|NELL1_uc010rdo.1_Missense_Mutation_p.N40S|NELL1_uc010rdp.1_5'UTR	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	40					cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GACCTTGTGAACACCACCCTT	0.488													51	43					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	20869190	20869190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:20869190G>A	uc001mqe.2	+	4	550	c.397G>A	c.(397-399)GGG>AGG	p.G133R	NELL1_uc001mqf.2_Missense_Mutation_p.G133R|NELL1_uc009yid.2_Missense_Mutation_p.G161R|NELL1_uc010rdo.1_Intron|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	133	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						CATACACAATGGGAAGCCAAG	0.463													5	26					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	24936055	24936055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:24936055C>T	uc001mqs.2	+	7	727	c.493C>T	c.(493-495)CGT>TGT	p.R165C	LUZP2_uc009yif.2_Missense_Mutation_p.R79C|LUZP2_uc009yig.2_Intron	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	165	Potential.|Leucine-zipper.					extracellular region				ovary(1)|skin(1)	2						GAAGGAGCTTCGTTATGGGAA	0.318													19	20					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	25004692	25004692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:25004692G>A	uc001mqs.2	+	9	852	c.618G>A	c.(616-618)ATG>ATA	p.M206I	LUZP2_uc009yif.2_Missense_Mutation_p.M120I|LUZP2_uc009yig.2_Missense_Mutation_p.M164I	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	206	Potential.					extracellular region				ovary(1)|skin(1)	2						TGAAAGCAATGAAAGAGACTG	0.413													27	86					0	0	1	0	0
MUC15	143662	broad.mit.edu	37	11	26584716	26584716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:26584716C>T	uc001mqx.2	-	3	1057	c.791G>A	c.(790-792)AGG>AAG	p.R264K	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.R291K|MUC15_uc001mqy.2_Intron	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	264	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATCCGTTTTCCTTTTTCCACA	0.393													15	55					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016273	27016273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:27016273G>A	uc001mrd.2	+	1	646	c.200G>A	c.(199-201)GGG>GAG	p.G67E		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	67						extracellular region|Golgi apparatus					0						TGCTCCCAGGGGGAGGGGAGC	0.667													4	21					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016395	27016395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:27016395G>A	uc001mrd.2	+	1	768	c.322G>A	c.(322-324)GAC>AAC	p.D108N		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	108						extracellular region|Golgi apparatus					0						CATCTCCTACGACCTAGACGG	0.627													10	38					0	0	1	0	0
LGR4	55366	broad.mit.edu	37	11	27401879	27401879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:27401879G>A	uc001mrj.3	-	10	1395	c.910C>T	c.(910-912)CGT>TGT	p.R304C	LGR4_uc001mrk.3_Missense_Mutation_p.R280C	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	304	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						CTTGCACCACGAATGACTCTT	0.328													21	83					0	0	1	0	0
KIF18A	81930	broad.mit.edu	37	11	28080652	28080652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:28080652G>A	uc001msc.2	-	13	1951	c.1769C>T	c.(1768-1770)GCC>GTC	p.A590V		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	590					blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						TGACAGGCCGGCTTCTTTTAA	0.373													29	109					0	0	1	0	0
METT5D1	196074	broad.mit.edu	37	11	28134888	28134888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:28134888C>T	uc001msh.2	+	3	462	c.7C>T	c.(7-9)CGG>TGG	p.R3W	METT5D1_uc001msg.2_Missense_Mutation_p.R3W|METT5D1_uc001mse.2_Missense_Mutation_p.R3W|METT5D1_uc001msf.1_RNA	NM_001113528	NP_001107000	A6NJ78	MET15_HUMAN	methyltransferase 5 domain containing 1 isoform	3							methyltransferase activity				0						CAAAATGCTTCGGTATCCATA	0.289													10	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30902728	30902728	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:30902728C>T	uc001mss.1	-	15		c.2304G>A			uc009yjk.1_Missense_Mutation_p.G1182E|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GAAACCATGTCCCATAGACAC	0.433													12	49					0	0	1	0	0
RCN1	5954	broad.mit.edu	37	11	32125932	32125932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:32125932G>A	uc010reb.1	+	6	1176	c.910G>A	c.(910-912)GAA>AAA	p.E304K	RCN1_uc010rea.1_Missense_Mutation_p.E253K|RCN1_uc001mtk.2_Missense_Mutation_p.E138K	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	304	6; possibly ancestral (Potential).|EF-hand 6.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					AACTAAAGAGGAAATATTGGA	0.403													3	17					0	0	1	0	0
TCP11L1	55346	broad.mit.edu	37	11	33080581	33080581	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:33080581A>G	uc001mud.2	+	6	1115	c.715A>G	c.(715-717)ATG>GTG	p.M239V	TCP11L1_uc009yju.2_Missense_Mutation_p.M54V|TCP11L1_uc010rei.1_Missense_Mutation_p.M239V|TCP11L1_uc001mue.2_Missense_Mutation_p.M239V|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	239											0						GCCTCATCTCATGCAGCAGTC	0.378													34	46					0	0	1	0	0
C11orf41	25758	broad.mit.edu	37	11	33565765	33565765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:33565765C>T	uc001mup.3	+	1	1889	c.1765C>T	c.(1765-1767)CCA>TCA	p.P589S	C11orf41_uc001mun.1_Missense_Mutation_p.P589S	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	589						integral to membrane				ovary(2)	2						TGCTTCCACACCATTCCAGAA	0.463													20	83					0	0	1	0	0
SLC1A2	6506	broad.mit.edu	37	11	35308323	35308323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:35308323C>T	uc001mwd.2	-	8	1859	c.1267G>A	c.(1267-1269)GGA>AGA	p.G423R	SLC1A2_uc001mwe.2_Missense_Mutation_p.G414R|SLC1A2_uc010rev.1_Missense_Mutation_p.G423R	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	423	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	ACAATCTGTCCTCCATCCAGG	0.488													38	88					0	0	1	0	0
TRIM44	54765	broad.mit.edu	37	11	35747577	35747577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:35747577G>A	uc001mwi.2	+	3	1160	c.853G>A	c.(853-855)GAG>AAG	p.E285K		NM_017583	NP_060053	Q96DX7	TRI44_HUMAN	DIPB protein	285						intracellular	protein binding|zinc ion binding			skin(1)	1	all_lung(20;0.0317)|Lung NSC(22;0.0661)|all_epithelial(35;0.115)	all_hematologic(20;0.107)				GGACATCCAAGAGGCAATGGC	0.463													11	42					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36595303	36595303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:36595303C>T	uc001mwu.3	+	2	573	c.449C>T	c.(448-450)TCC>TTC	p.S150F	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	150	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AGAGCTACTTCCTGGCCGGAC	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				20	49					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36596519	36596519	+	Silent	SNP	C	T	T	rs141265699		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:36596519C>T	uc001mwu.3	+	2	1789	c.1665C>T	c.(1663-1665)ACC>ACT	p.T555T	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	555					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CAGTGGACACCATTGCAAAGA	0.473									Familial_Hemophagocytic_Lymphohistiocytosis				12	39					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36597316	36597316	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:36597316A>G	uc001mwu.3	+	2	2586	c.2462A>G	c.(2461-2463)AAT>AGT	p.N821S	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	821					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GTGTATAAGAATCCCAATGCT	0.468									Familial_Hemophagocytic_Lymphohistiocytosis				34	42					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136032	40136032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:40136032G>A	uc001mxa.1	-	2	3775	c.1811C>T	c.(1810-1812)CCC>CTC	p.P604L	LRRC4C_uc001mxc.1_Missense_Mutation_p.P600L|LRRC4C_uc001mxd.1_Missense_Mutation_p.P600L|LRRC4C_uc001mxb.1_Missense_Mutation_p.P600L	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	604					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GTGGTTGAAGGGAGATTTGTA	0.423													19	112					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136396	40136396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:40136396C>T	uc001mxa.1	-	2	3411	c.1447G>A	c.(1447-1449)GAC>AAC	p.D483N	LRRC4C_uc001mxc.1_Missense_Mutation_p.D479N|LRRC4C_uc001mxd.1_Missense_Mutation_p.D479N|LRRC4C_uc001mxb.1_Missense_Mutation_p.D479N	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	483					regulation of axonogenesis	integral to membrane	protein binding	p.D483E(1)		ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GTCTCCCAGTCGACCACTGGA	0.502													36	41					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137125	40137125	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:40137125G>A	uc001mxa.1	-	2	2682	c.718C>T	c.(718-720)CAG>TAG	p.Q240*	LRRC4C_uc001mxc.1_Nonsense_Mutation_p.Q236*|LRRC4C_uc001mxd.1_Nonsense_Mutation_p.Q236*|LRRC4C_uc001mxb.1_Nonsense_Mutation_p.Q236*	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	240	LRR 7.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ATCAAACCCTGGAAAGAGCCA	0.458													10	71					0	0	1	0	0
EXT2	2132	broad.mit.edu	37	11	44228420	44228420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:44228420C>T	uc001mxz.2	+	10	1907	c.1573C>T	c.(1573-1575)CCT>TCT	p.P525S	EXT2_uc010rfo.1_Missense_Mutation_p.P553S|EXT2_uc001mxy.2_Missense_Mutation_p.P538S|EXT2_uc009ykt.2_Missense_Mutation_p.P535S|EXT2_uc001mya.2_Missense_Mutation_p.P558S	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	525	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CCGTTTCTTCCCTTATGATGA	0.408			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				19	73					0	0	1	0	0
TP53I11	9537	broad.mit.edu	37	11	44959777	44959777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:44959777C>T	uc001myi.2	-	5	715	c.110G>A	c.(109-111)GGG>GAG	p.G37E	TP53I11_uc001myf.1_RNA|TP53I11_uc001myj.2_Missense_Mutation_p.G37E|TP53I11_uc001myk.2_Missense_Mutation_p.G37E|TP53I11_uc001myl.2_Missense_Mutation_p.G37E|TP53I11_uc001mym.2_Missense_Mutation_p.G4R	NM_006034	NP_006025	O14683	P5I11_HUMAN	p53-induced protein	37	Cytoplasmic (Potential).				negative regulation of cell proliferation|response to stress	integral to membrane				ovary(1)	1						ATGCACCTCCCCGTCGTCATC	0.672													6	9					0	0	1	0	0
SYT13	57586	broad.mit.edu	37	11	45275930	45275930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:45275930C>T	uc001myq.2	-	3	561	c.435G>A	c.(433-435)ATG>ATA	p.M145I	SYT13_uc009yku.1_Missense_Mutation_p.M1I	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	145	Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						TCCAGGTCTCCATGACACAGA	0.512													16	29					0	0	1	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45926268	45926268	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:45926268G>A	uc001nbr.2	+	9	1947	c.1777_splice	c.e9-1	p.I593_splice		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting						vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		GTCACCTGTAGATTGCCACCA	0.607													29	73					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564639	46564639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:46564639G>A	uc010rgu.1	-	7	1288	c.928C>T	c.(928-930)CTT>TTT	p.L310F	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Missense_Mutation_p.L310F|AMBRA1_uc001ncu.1_Intron|AMBRA1_uc001ncv.2_Intron|AMBRA1_uc001ncw.2_Intron|AMBRA1_uc001ncx.2_Missense_Mutation_p.L310F	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	310					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		CGGCTGCAAAGGCACAGGATC	0.612													8	6					0	0	1	0	0
F2	2147	broad.mit.edu	37	11	46760877	46760877	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:46760877G>A	uc001ndf.3	+	14	1831	c.1788G>A	c.(1786-1788)CGG>CGA	p.R596R	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	596	Peptidase S1.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GCTGTGACCGGGATGGGAAAT	0.478													44	37					0	0	1	0	0
CKAP5	9793	broad.mit.edu	37	11	46839876	46839876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:46839876G>A	uc001ndi.1	-	3	346	c.236C>T	c.(235-237)GCC>GTC	p.A79V	CKAP5_uc009ylg.1_5'UTR|CKAP5_uc001ndj.1_Missense_Mutation_p.A79V	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	79					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TGCTACATGGGCATTTTCAAC	0.343													34	49					0	0	1	0	0
ACP2	53	broad.mit.edu	37	11	47264356	47264356	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:47264356C>T	uc001nei.2	-	10	1173	c.1056G>A	c.(1054-1056)CAG>CAA	p.Q352Q	ACP2_uc010rhe.1_Silent_p.Q324Q|ACP2_uc009ylj.2_Silent_p.Q280Q|ACP2_uc010rhf.1_Silent_p.Q320Q|ACP2_uc010rhg.1_Silent_p.Q289Q|ACP2_uc010rhh.1_Silent_p.Q165Q|ACP2_uc010rhi.1_Silent_p.Q165Q|ACP2_uc009ylk.2_Silent_p.Q319Q	NM_001610	NP_001601	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal isoform 1	352	Lumenal (Potential).					integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			ovary(1)	1						GAAGGAAGTCCTGCAGTGGGC	0.632													14	83					0	0	1	0	0
MADD	8567	broad.mit.edu	37	11	47298352	47298352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:47298352C>T	uc001ner.1	+	5	1224	c.1033C>T	c.(1033-1035)CCA>TCA	p.P345S	MADD_uc001neq.2_Missense_Mutation_p.P345S|MADD_uc001nev.1_Missense_Mutation_p.P345S|MADD_uc001nes.1_Missense_Mutation_p.P345S|MADD_uc001net.1_Missense_Mutation_p.P345S|MADD_uc009yln.1_Missense_Mutation_p.P345S|MADD_uc001neu.1_Missense_Mutation_p.P345S|MADD_uc001nex.2_Missense_Mutation_p.P345S|MADD_uc001nez.2_Missense_Mutation_p.P345S|MADD_uc001new.2_Missense_Mutation_p.P345S	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	345	Helical; (Potential).|DENN.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		AATGATCTACCCACTGGAGTA	0.527													33	59					0	0	1	0	0
MADD	8567	broad.mit.edu	37	11	47304376	47304376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:47304376C>T	uc001ner.1	+	10	1909	c.1718C>T	c.(1717-1719)CCA>CTA	p.P573L	MADD_uc001neq.2_Missense_Mutation_p.P573L|MADD_uc001nev.1_Missense_Mutation_p.P573L|MADD_uc001nes.1_Missense_Mutation_p.P573L|MADD_uc001net.1_Missense_Mutation_p.P573L|MADD_uc009yln.1_Missense_Mutation_p.P573L|MADD_uc001neu.1_Missense_Mutation_p.P573L|MADD_uc001nex.2_Missense_Mutation_p.P573L|MADD_uc001nez.2_Missense_Mutation_p.P573L|MADD_uc001new.2_Missense_Mutation_p.P573L	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	573					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		ATGTTTGATCCAGCCCTGATT	0.483													19	61					0	0	1	0	0
FNBP4	23360	broad.mit.edu	37	11	47755579	47755579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:47755579C>T	uc009ylv.2	-	10	1837	c.1684G>A	c.(1684-1686)GAG>AAG	p.E562K	FNBP4_uc001ngj.2_Missense_Mutation_p.E469K|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	562										ovary(1)	1						AGACTTACCTCAGTCTGTAAG	0.348													5	15					0	0	1	0	0
NUP160	23279	broad.mit.edu	37	11	47827779	47827779	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:47827779C>T	uc001ngm.2	-	20	2617	c.2532G>A	c.(2530-2532)AAG>AAA	p.K844K	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	844					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TCAGAGGTGCCTTTGGCTGAG	0.368													12	50					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238450	48238450	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48238450T>G	uc010rhs.1	+	1	89	c.89T>G	c.(88-90)CTC>CGC	p.L30R		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						GTGGTGTTTCTCCCCGTGTAC	0.502													77	60					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238586	48238586	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48238586C>T	uc010rhs.1	+	1	225	c.225C>T	c.(223-225)ATC>ATT	p.I75I		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CCTCCACTATCGCCCCTAAAT	0.453													33	131					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238844	48238844	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48238844C>T	uc010rhs.1	+	1	483	c.483C>T	c.(481-483)ATC>ATT	p.I161I		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						TTCTCGTTATCATCCAATTGC	0.473													15	80					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285549	48285549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48285549C>T	uc010rht.1	+	1	137	c.137C>T	c.(136-138)ACC>ATC	p.T46I		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						ATTGTGGTGACCATCCTGGCC	0.498													14	47					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285762	48285762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48285762C>T	uc010rht.1	+	1	350	c.350C>T	c.(349-351)GCC>GTC	p.A117V		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						ATGGTGATGGCCTATGACCGC	0.527													20	39					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328046	48328046	+	Missense_Mutation	SNP	C	T	T	rs146061383		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48328046C>T	uc010rhu.1	+	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AAGATCATCTCCTTCAATGGC	0.468													17	61					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48347200	48347200	+	Silent	SNP	C	T	T	rs141730559		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48347200C>T	uc010rhv.1	+	1	708	c.708C>T	c.(706-708)TTC>TTT	p.F236F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTTGAACTTCCTCATGCTGG	0.522													4	40					0	0	1	0	0
OR4A47	403253	broad.mit.edu	37	11	48510838	48510838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48510838C>T	uc010rhx.1	+	1	494	c.494C>T	c.(493-495)CCA>CTA	p.P165L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TATGGGCTCCCATTCTGTGGC	0.448													21	93					0	0	1	0	0
OR4A47	403253	broad.mit.edu	37	11	48511117	48511117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:48511117G>A	uc010rhx.1	+	1	773	c.773G>A	c.(772-774)AGA>AAA	p.R258K		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGTATGCTAGACCTGCTAGG	0.428													45	113					0	0	1	0	0
LOC440040	440040	broad.mit.edu	37	11	49830143	49830143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:49830143C>T	uc010rhy.1	+	6	1461	c.983C>T	c.(982-984)GCA>GTA	p.A328V	LOC440040_uc009ymb.2_Missense_Mutation_p.A328V	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GAGCTCAGTGCAGGGCCCATC	0.468													8	17					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974230	49974230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:49974230G>A	uc010rhz.1	+	1	256	c.256G>A	c.(256-258)GAA>AAA	p.E86K		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TTCACTCTATGAAAACAAGAC	0.403													46	128					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411705	51411705	+	Missense_Mutation	SNP	C	T	T	rs5029501		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51411705C>T	uc001nhi.1	-	1	691	c.691G>A	c.(691-693)GGT>AGT	p.G231S		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AAGGCTTTACCCCTCTTTTCC	0.413													6	45					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411754	51411754	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51411754G>A	uc001nhi.1	-	1	642	c.642C>T	c.(640-642)TCC>TCT	p.S214S		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TGACTCCATAGGAGATTAACA	0.448													6	34					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411951	51411951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51411951C>T	uc001nhi.1	-	1	445	c.445G>A	c.(445-447)GGA>AGA	p.G149R		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACAAAACCTCCAATCATGGCC	0.453													24	31					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411972	51411972	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51411972G>A	uc001nhi.1	-	1	424	c.424C>T	c.(424-426)CTG>TTG	p.L142L		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACCACCAACAGAAGGAAGCAA	0.463													26	31					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51412124	51412124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51412124G>A	uc001nhi.1	-	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACCTTGGAAGGAAATAGTCTT	0.438													11	27					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515287	51515287	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51515287G>A	uc010ric.1	+	1	6	c.6G>A	c.(4-6)GAG>GAA	p.E2E		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATACATGGAGAATAGGAATA	0.274													11	47					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515755	51515755	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:51515755C>T	uc010ric.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCATACAGATCCTCTTCATCT	0.468													45	69					0	0	1	0	0
TRIM48	79097	broad.mit.edu	37	11	55032550	55032550	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55032550G>A	uc010rid.1	+	2	305	c.219G>A	c.(217-219)AAG>AAA	p.K73K		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	57						intracellular	zinc ion binding				0						AATGCATAAAGACAATACAGC	0.473													30	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	55063069	55063069	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55063069C>T	uc001nhl.1	-	3		c.566G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		GCCCTCCTTTCACAGCCTCTC	0.408													5	20					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55111034	55111034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55111034C>T	uc010rie.1	+	1	358	c.358C>T	c.(358-360)CGC>TGC	p.R120C		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GGCCTATGATCGCTATGTGGC	0.463													42	135					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136093	55136093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55136093C>T	uc010rif.1	+	1	734	c.734C>T	c.(733-735)TCC>TTC	p.S245F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	245	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATCCTGCTTTCCTATGGGGTC	0.428													35	46					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136144	55136144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55136144G>A	uc010rif.1	+	1	785	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	262	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GAAGGGAAACGAAAAGCTTTC	0.438													55	67					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136150	55136150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55136150C>T	uc010rif.1	+	1	791	c.791C>T	c.(790-792)GCT>GTT	p.A264V		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	264	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAACGAAAAGCTTTCTACACC	0.433													54	78					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322804	55322804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55322804C>T	uc010rig.1	+	1	1022	c.1022C>T	c.(1021-1023)ACT>ATT	p.T341I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGATTTACACTTTCAGGAAT	0.338										HNSCC(20;0.049)			23	47					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55340394	55340395	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55340394_55340395CC>TT	uc010rih.1	+	1	791_792	c.791_792CC>TT	c.(790-792)CCC>CTT	p.P264L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				ACCGTATTCCCCATGGATAAGA	0.396													22	30					0	0	1	0	0
OR4C11	219429	broad.mit.edu	37	11	55371492	55371492	+	Missense_Mutation	SNP	G	A	A	rs139149255	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55371492G>A	uc010rii.1	-	1	358	c.358C>T	c.(358-360)CGC>TGC	p.R120C		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCACATAGCGATCAACAGCC	0.433													32	49					0	0	1	0	0
OR4C11	219429	broad.mit.edu	37	11	55371798	55371798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55371798C>T	uc010rii.1	-	1	52	c.52G>A	c.(52-54)GAT>AAT	p.D18N		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCAAGGGATCCTGTGTTAAT	0.383													12	46					0	0	1	0	0
OR4C11	219429	broad.mit.edu	37	11	55371809	55371809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55371809C>T	uc010rii.1	-	1	41	c.41G>A	c.(40-42)GGA>GAA	p.G14E		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTGTTAATCCTAACAGTAT	0.353													18	37					0	0	1	0	0
OR4S2	219431	broad.mit.edu	37	11	55418422	55418422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55418422C>T	uc001nhs.1	+	1	43	c.43C>T	c.(43-45)CTT>TTT	p.L15F		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TTTCTGGGGTCTTTCTCAGAG	0.343													30	48					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55433486	55433486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55433486C>T	uc001nht.3	+	3	1109	c.844C>T	c.(844-846)CCC>TCC	p.P282S	OR4C6_uc010rik.1_Missense_Mutation_p.P282S	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CATGTTAAATCCCTTGATCTA	0.458													23	26					0	0	1	0	0
OR5D14	219436	broad.mit.edu	37	11	55563235	55563235	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55563235C>T	uc010rim.1	+	1	204	c.204C>T	c.(202-204)CTC>CTT	p.L68L		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TTAGTCACCTCTCTTTTGTTG	0.378													28	45					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587954	55587954	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55587954C>T	uc010rin.1	+	1	849	c.849C>T	c.(847-849)ATC>ATT	p.I283I		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CCGTGGTGATCCCCATGTTGA	0.473													10	46					0	0	1	0	0
OR5L2	26338	broad.mit.edu	37	11	55594723	55594723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55594723C>T	uc001nhy.1	+	1	29	c.29C>T	c.(28-30)GCT>GTT	p.A10V		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				ACCACTGTGGCTGAGTTCATT	0.413										HNSCC(27;0.073)			92	112					0	0	1	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735218	55735218	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55735218A>T	uc010rit.1	-	1	722	c.722T>A	c.(721-723)TTA>TAA	p.L241*		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TCCAAAGAATAAGATTACAAC	0.388													9	27					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798447	55798447	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55798447C>T	uc010riw.1	+	1	553	c.553C>T	c.(553-555)CTG>TTG	p.L185L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					CCCACCTCTTCTGGCTTTATC	0.418													96	126					0	0	1	0	0
OR8I2	120586	broad.mit.edu	37	11	55861600	55861600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55861600G>A	uc010rix.1	+	1	817	c.817G>A	c.(817-819)GCA>ACA	p.A273T		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					GGCGCAGGTGGCATCTGTATT	0.443													42	48					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890768	55890768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55890768G>A	uc001nii.1	+	1	920	c.920G>A	c.(919-921)AGA>AAA	p.R307K		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					GTCATGCAGAGAAGACAGGAC	0.348													25	73					0	0	1	0	0
OR8J3	81168	broad.mit.edu	37	11	55904475	55904475	+	Silent	SNP	G	A	A	rs147104612	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55904475G>A	uc010riz.1	-	1	720	c.720C>T	c.(718-720)ACC>ACT	p.T240T		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					GCGAAGCGCAGGTGGAAAAGG	0.393													16	62					0	0	1	0	0
OR5J2	282775	broad.mit.edu	37	11	55944167	55944167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55944167C>T	uc010rjb.1	+	1	74	c.74C>T	c.(73-75)GCT>GTT	p.A25V		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					GAACTAAAAGCTGTGCTTTTT	0.388													57	75					0	0	1	0	0
OR5J2	282775	broad.mit.edu	37	11	55944743	55944743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:55944743C>T	uc010rjb.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					GTGATCATTTCCTACATCTTC	0.488													45	63					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56058264	56058264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:56058264G>A	uc010rje.1	-	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GCCCATGAAGGAAATATAGTT	0.398													50	145					0	0	1	0	0
OR8K3	219473	broad.mit.edu	37	11	56086229	56086229	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:56086229C>T	uc010rjf.1	+	1	447	c.447C>T	c.(445-447)TAC>TAT	p.Y149Y		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CAATCCCTTACCTCTATTGCA	0.433													41	65					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409093	56409093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:56409093C>T	uc001njb.1	-	1	823	c.823G>A	c.(823-825)GAG>AAG	p.E275K		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TTGTCTTGCTCCATTGAGTAG	0.408													27	43					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56950085	56950085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:56950085C>T	uc001njl.1	+	1	865	c.718C>T	c.(718-720)CCC>TCC	p.P240S		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	210	LRRCT.					integral to membrane					0						CGGTGGCAATCCCTGGGTGTG	0.632													43	66					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56954888	56954888	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:56954888C>T	uc001njl.1	+	2	1107	c.960C>T	c.(958-960)TTC>TTT	p.F320F	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	290	Helical; (Potential).					integral to membrane					0						CCACCAACTTCCTCCTGGGCA	0.572													27	34					0	0	1	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310520	57310520	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:57310520G>A	uc009ymh.1	+	2	459	c.459G>A	c.(457-459)GAG>GAA	p.E153E		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	135										ovary(1)	1						TGGCCTCTGAGAAGCAGAAGG	0.522													4	11					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57381809	57381809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:57381809G>A	uc001nkp.1	+	8	1449	c.1258G>A	c.(1258-1260)GAT>AAT	p.D420N	SERPING1_uc001nkq.1_Missense_Mutation_p.D383N|SERPING1_uc010rju.1_Missense_Mutation_p.D368N|SERPING1_uc010rjv.1_Missense_Mutation_p.D425N|SERPING1_uc001nkr.1_Missense_Mutation_p.D420N|SERPING1_uc009ymi.1_Missense_Mutation_p.D429N|SERPING1_uc009ymj.1_Silent_p.S346S|SERPING1_uc001nks.1_Missense_Mutation_p.D111N	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	420					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						AGAATTCTTCGATTTTTCTTA	0.483									Hereditary_Angioedema				59	68					0	0	1	0	0
TMX2	51075	broad.mit.edu	37	11	57480207	57480207	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:57480207G>A	uc001nlc.1	+	1	166	c.117G>A	c.(115-117)GTG>GTA	p.V39V	CTNND1_uc001nlf.1_5'UTR|MED19_uc001nla.1_5'Flank|MED19_uc001nlb.2_5'Flank|TMX2_uc001nld.1_5'UTR|TMX2_uc001nle.1_Silent_p.V39V	NM_015959	NP_057043	Q9Y320	TMX2_HUMAN	thioredoxin domain containing 14 isoform 1	39					cell redox homeostasis	integral to membrane					0						TCCTACTCGTGAGGAAACTGC	0.602													18	65					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58034485	58034485	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58034485G>A	uc001nmq.1	-	1	1248	c.846C>T	c.(844-846)GCC>GCT	p.A282A		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TGTTCCTCAGGGCATAGATAA	0.537													41	46					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58189901	58189901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58189901C>T	uc010rkg.1	-	1	834	c.834G>A	c.(832-834)ATG>ATA	p.M278I		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGGGGATGATCATAGCATAGA	0.453													32	40					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58190498	58190498	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58190498G>A	uc010rkg.1	-	1	237	c.237C>T	c.(235-237)GTC>GTT	p.V79V		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ACCCAGCCATGACCTTGGGAG	0.483													17	116					0	0	1	0	0
GLYAT	10249	broad.mit.edu	37	11	58482865	58482865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58482865C>T	uc001nnb.2	-	3	268	c.113G>A	c.(112-114)GGA>GAA	p.G38E	GLYAT_uc001nnc.2_Missense_Mutation_p.G38E	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	38					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	GAATGGATTTCCATGGTTTAT	0.398													7	42					0	0	1	0	0
FAM111A	63901	broad.mit.edu	37	11	58920891	58920891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58920891G>A	uc010rkp.1	+	5	1977	c.1750G>A	c.(1750-1752)GAT>AAT	p.D584N	FAM111A_uc010rkq.1_Missense_Mutation_p.D584N|FAM111A_uc010rkr.1_Missense_Mutation_p.D584N|FAM111A_uc001nno.2_Missense_Mutation_p.D584N|FAM111A_uc001nnp.2_Missense_Mutation_p.D584N|FAM111A_uc001nnq.2_Missense_Mutation_p.D584N	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	584					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				CATCCTCCTTGATATTAAGCA	0.393													28	95					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59211055	59211055	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:59211055C>T	uc001nnx.1	+	1	414	c.414C>T	c.(412-414)ATC>ATT	p.I138I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						ACCCCACTATCATGACCCAGG	0.542													50	221					0	0	1	0	0
OR4D10	390197	broad.mit.edu	37	11	59245655	59245655	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:59245655C>T	uc001nnz.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCCTGCATTTCGTGCCCTGCA	0.547													47	128					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59282883	59282883	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:59282883C>T	uc010rkv.1	+	1	498	c.498C>T	c.(496-498)CTC>CTT	p.L166L		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCTCCCACTCCCTTTCTGTG	0.547													45	49					0	0	1	0	0
OR10V1	390201	broad.mit.edu	37	11	59481045	59481045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:59481045G>A	uc001nof.1	-	1	274	c.274C>T	c.(274-276)CCT>TCT	p.P92S		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGGAAACAGGAGTTTTGCCC	0.458													9	38					0	0	1	0	0
MS4A1	931	broad.mit.edu	37	11	60229883	60229883	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:60229883C>T	uc001npp.2	+	3	452	c.36C>T	c.(34-36)TTC>TTT	p.F12F	MS4A1_uc009ymy.1_Silent_p.F12F|MS4A1_uc001npq.2_Silent_p.F12F|MS4A1_uc009yna.2_Silent_p.F12F|MS4A1_uc009ymz.2_Silent_p.F12F|MS4A1_uc010rlc.1_Silent_p.F12F	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	12	Cytoplasmic (Potential).				B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	ATGGGACTTTCCCGGCAGAGC	0.423													33	29					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60637179	60637179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:60637179C>T	uc001nqd.2	+	3	508	c.488C>T	c.(487-489)TCC>TTC	p.S163F	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	163	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CAAACCCTTTCCTTCCTCCCC	0.612													13	31					0	0	1	0	0
VWCE	220001	broad.mit.edu	37	11	61026612	61026612	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:61026612G>A	uc001nra.2	-	20	2682	c.2403C>T	c.(2401-2403)CTC>CTT	p.L801L	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	801						extracellular region	calcium ion binding			ovary(1)	1						TTCTTAAAAGGAGCTGGAGGA	0.572													9	42					0	0	1	0	0
VWCE	220001	broad.mit.edu	37	11	61048507	61048507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:61048507G>A	uc001nra.2	-	8	1267	c.988C>T	c.(988-990)CCT>TCT	p.P330S	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	330						extracellular region	calcium ion binding			ovary(1)	1						GGGGCAGAAGGGGAGGATGTG	0.682													8	9					0	0	1	0	0
SDHAF2	54949	broad.mit.edu	37	11	61205220	61205221	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:61205220_61205221CC>TT	uc001nrt.2	+	2	182_183	c.160_161CC>TT	c.(160-162)CCA>TTA	p.P54L		NM_017841	NP_060311	Q9NX18	SDHF2_HUMAN	succinate dehydrogenase complex assembly factor	54					mitochondrial electron transport, succinate to ubiquinone|protein-FAD linkage	mitochondrion	protein binding			ovary(2)	2						CCCTTTGCCTCCATGGCAGGAG	0.465									Familial_Paragangliomas				32	118					0	0	1	0	0
C11orf66	220004	broad.mit.edu	37	11	61249313	61249313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:61249313C>T	uc001nru.1	+	2	157	c.32C>T	c.(31-33)TCC>TTC	p.S11F	C11orf66_uc009ynq.1_Missense_Mutation_p.S11F	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	11										ovary(1)	1						GGGGTCGTCTCCCCTTATGTG	0.632													23	24					0	0	1	0	0
C11orf66	220004	broad.mit.edu	37	11	61253371	61253371	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:61253371C>T	uc001nru.1	+	7	800	c.675C>T	c.(673-675)CTC>CTT	p.L225L	C11orf66_uc009ynq.1_Silent_p.L225L	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	225										ovary(1)	1						CACAGGCCCTCCCTGGGGACC	0.557													24	27					0	0	1	0	0
SCGB1D4	404552	broad.mit.edu	37	11	62065014	62065014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62065014C>T	uc001ntd.1	-	2	226	c.172G>A	c.(172-174)GCC>ACC	p.A58T		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	58						extracellular region	binding				0						TCCAACTTGGCTGCAAGAGCT	0.443													52	187					0	0	1	0	0
SCGB1D4	404552	broad.mit.edu	37	11	62065102	62065102	+	Silent	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62065102A>T	uc001ntd.1	-	2	138	c.84T>A	c.(82-84)GCT>GCA	p.A28A		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	28						extracellular region	binding				0						TGATCTCAGAAGCAACAGCTG	0.448													28	84					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62284634	62284634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62284634G>A	uc001ntl.2	-	5	17555	c.17255C>T	c.(17254-17256)TCT>TTT	p.S5752F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5752					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCCTTCCAGAGAGCCCAGGCT	0.483													49	40					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62287212	62287212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62287212C>T	uc001ntl.2	-	5	14977	c.14677G>A	c.(14677-14679)GAA>AAA	p.E4893K	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4893					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCAGGGCCTTCGAAATCCAGA	0.458													21	24					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62287916	62287916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62287916G>A	uc001ntl.2	-	5	14273	c.13973C>T	c.(13972-13974)CCC>CTC	p.P4658L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4658					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GCTGAACTTGGGCATTTTCAC	0.522													74	252					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62289083	62289083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62289083G>A	uc001ntl.2	-	5	13106	c.12806C>T	c.(12805-12807)CCC>CTC	p.P4269L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4269					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTTCACCTTGGGACCTTTCAG	0.498													96	120					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62762117	62762117	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62762117G>A	uc001nwo.2	-	8	1249	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Silent_p.F371F|SLC22A8_uc009yom.2_Silent_p.F248F|SLC22A8_uc010rmm.1_Silent_p.F280F|SLC22A8_uc009yon.2_Silent_p.F371F	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	371	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GGATGGTGATGAACTTGGCTG	0.547													4	35					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62766404	62766404	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:62766404G>A	uc001nwo.2	-	5	886	c.750C>T	c.(748-750)TTC>TTT	p.F250F	SLC22A8_uc001nwn.1_Silent_p.F41F|SLC22A8_uc001nwp.2_Silent_p.F250F|SLC22A8_uc009yom.2_Silent_p.F127F|SLC22A8_uc010rmm.1_Silent_p.F159F|SLC22A8_uc009yon.2_Silent_p.F250F	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	250	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						AGGATGATAGGAAGAAGACGA	0.577													22	33					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63065136	63065136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63065136G>A	uc009yor.2	+	4	975	c.767G>A	c.(766-768)CGA>CAA	p.R256Q	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	256	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TATGTCTTCCGAGACTGGCAA	0.483													24	75					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63283053	63283053	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63283053G>A	uc001nxa.2	+	8	1073	c.732G>A	c.(730-732)AGG>AGA	p.R244R	LGALS12_uc001nxb.2_Silent_p.R235R|LGALS12_uc001nxc.2_Silent_p.R245R|LGALS12_uc001nxd.2_Silent_p.R183R|LGALS12_uc001nxe.2_Silent_p.R174R|LGALS12_uc009yot.2_Silent_p.R204R	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	244	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						TGAGCCTGAGGGACCAGGCTG	0.612													15	61					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63283741	63283741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63283741G>A	uc001nxa.2	+	9	1228	c.887G>A	c.(886-888)GGA>GAA	p.G296E	LGALS12_uc001nxb.2_Missense_Mutation_p.G287E|LGALS12_uc001nxc.2_Missense_Mutation_p.G297E|LGALS12_uc001nxd.2_Missense_Mutation_p.G235E|LGALS12_uc001nxe.2_Missense_Mutation_p.G226E|LGALS12_uc009yot.2_Missense_Mutation_p.G256E	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	296	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						TTCCAGGAGGGAGGGCTGAAG	0.632													10	53					0	0	1	0	0
RARRES3	5920	broad.mit.edu	37	11	63313646	63313646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63313646G>A	uc001nxf.3	+	4	481	c.413G>A	c.(412-414)GGT>GAT	p.G138D		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	138					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						GTTGAAGTTGGTGTGGCCACG	0.527													111	148					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63487362	63487362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63487362C>T	uc001nxq.2	+	3	1575	c.1388C>T	c.(1387-1389)TCT>TTT	p.S463F	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.S444F|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.S351F|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	463					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TCTTTGGGTTCTGGAGTGGCC	0.453													41	44					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63487368	63487368	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63487368T>G	uc001nxq.2	+	3	1581	c.1394T>G	c.(1393-1395)GTG>GGG	p.V465G	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.V446G|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.V353G|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	465					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						GGTTCTGGAGTGGCCACAGTG	0.458													14	69					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63884760	63884760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:63884760G>A	uc001nyi.1	+	2	1362	c.1021G>A	c.(1021-1023)GAC>AAC	p.D341N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	313	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						GTGGCTGCGGGACTGGGTGAA	0.657													27	39					0	0	1	0	0
PLCB3	5331	broad.mit.edu	37	11	64023201	64023201	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64023201C>T	uc001nzb.2	+	8	606	c.606C>T	c.(604-606)TCC>TCT	p.S202S	PLCB3_uc009ypg.1_Silent_p.S202S|PLCB3_uc009yph.1_Silent_p.S135S|PLCB3_uc009ypi.2_Silent_p.S202S	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	202					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						AGAGTGAGTCCATCCGGCCTG	0.617													29	98					0	0	1	0	0
PLCB3	5331	broad.mit.edu	37	11	64030187	64030187	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64030187C>T	uc001nzb.2	+	19	2262	c.2262C>T	c.(2260-2262)CTC>CTT	p.L754L	PLCB3_uc009ypg.1_Silent_p.L754L|PLCB3_uc009yph.1_Silent_p.L687L|PLCB3_uc009ypi.2_Silent_p.L754L	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	754	C2.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						TGTTTGGCCTCCCTGTTGATA	0.627													29	99					0	0	1	0	0
PLCB3	5331	broad.mit.edu	37	11	64031561	64031561	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64031561G>T	uc001nzb.2	+	22	2629	c.2629G>T	c.(2629-2631)GCC>TCC	p.A877S	PLCB3_uc009ypg.1_Missense_Mutation_p.A877S|PLCB3_uc009yph.1_Missense_Mutation_p.A810S|PLCB3_uc009ypi.2_Missense_Mutation_p.A877S	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	877					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						CCGGCAGCTGGCCGCCCTCAT	0.657													12	47					1.61879e-10	1.63005e-10	1	1	0
RPS6KA4	8986	broad.mit.edu	37	11	64127960	64127960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64127960G>A	uc001oae.2	+	4	441	c.358G>A	c.(358-360)GGC>AGC	p.G120S	RPS6KA4_uc001oad.2_Missense_Mutation_p.G120S|RPS6KA4_uc010rnl.1_Missense_Mutation_p.G57S|RPS6KA4_uc001oaf.2_Missense_Mutation_p.G120S|RPS6KA4_uc009ypp.2_Missense_Mutation_p.G120S	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	120	Protein kinase 1.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						CTATGTGAGCGGCGGGGAGAT	0.642													3	9					0	0	1	0	0
SLC22A12	116085	broad.mit.edu	37	11	64367874	64367874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64367874G>A	uc001oam.1	+	8	2068	c.1321G>A	c.(1321-1323)GGG>AGG	p.G441R	SLC22A12_uc001oal.1_Missense_Mutation_p.G220R|SLC22A12_uc009yps.1_Missense_Mutation_p.G407R|SLC22A12_uc001oan.1_Missense_Mutation_p.G333R|SLC22A12_uc009ypt.2_Missense_Mutation_p.G259R	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	441	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GGCCGTGCTGGGGCTGGGCGG	0.637													10	25					0	0	1	0	0
MAP4K2	5871	broad.mit.edu	37	11	64563863	64563863	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64563863C>T	uc001obh.2	-	24	1726	c.1634_splice	c.e24-1	p.G545_splice	MAP4K2_uc001obg.2_RNA|MAP4K2_uc001obi.2_Splice_Site_p.G537_splice	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase						activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						GTGGATTTCCCTGCAGAAACA	0.642													12	35					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64863934	64863934	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64863934A>G	uc001ocr.1	+	1	252	c.212A>G	c.(211-213)GAA>GGA	p.E71G		NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	71					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						TTCGACCCGGAAGTTTACCTA	0.672													5	11					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64875963	64875963	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64875963C>T	uc001ocr.1	+	5	1060	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	C11orf2_uc001ocs.1_Silent_p.F216F	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	340					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						TGGCGGCCTTCGCCCGGCAGC	0.716													7	18					0	0	1	0	0
SPDYC	387778	broad.mit.edu	37	11	64938924	64938924	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:64938924C>T	uc010rnz.1	+	2	153	c.153C>T	c.(151-153)CTC>CTT	p.L51L		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	51					cell cycle	nucleus	protein kinase binding				0						ATGGGTTCCTCCGTTTTCGCC	0.617													14	26					0	0	1	0	0
RNASEH2C	84153	broad.mit.edu	37	11	65487831	65487831	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65487831G>C	uc001ofn.2	-	2	410	c.230C>G	c.(229-231)CCT>CGT	p.P77R	RNASEH2C_uc001ofm.2_RNA	NM_032193	NP_115569	Q8TDP1	RNH2C_HUMAN	ribonuclease H2, subunit C	77					RNA catabolic process	nucleus|ribonuclease H2 complex					0						CACGAGGCCAGGCGGCACCGC	0.647													8	77					0	0	1	0	0
CST6	1474	broad.mit.edu	37	11	65780337	65780337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65780337G>A	uc001ogr.2	+	2	335	c.281G>A	c.(280-282)GGG>GAG	p.G94E	CST6_uc001ogs.1_Missense_Mutation_p.G4E	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	94					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						ATGGAGATGGGGAGCACAGAC	0.627													16	32					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65784602	65784602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65784602C>T	uc001ogt.2	-	11	2383	c.2245G>A	c.(2245-2247)GTG>ATG	p.V749M		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	749	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						TCCTGCTCCACGCTTGCCACC	0.657													8	24					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793102	65793102	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65793102T>A	uc001ogt.2	-	1	887	c.749A>T	c.(748-750)CAT>CTT	p.H250L		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	250	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CACAGAGGAATGAGGGGAAAT	0.388													14	25					0	0	1	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793544	65793544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65793544C>T	uc001ogt.2	-	1	445	c.307G>A	c.(307-309)GGC>AGC	p.G103S		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	103	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						GGGACGGCGCCTTGAGAGGGA	0.607													55	90					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65824369	65824369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65824369C>T	uc001ogy.1	+	6	650	c.610C>T	c.(610-612)CCT>TCT	p.P204S	SF3B2_uc001ogx.1_Missense_Mutation_p.P203S	NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	204					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						CACCCCAGTCCCTCGGCCCCC	0.592													13	46					0	0	1	0	0
PACS1	55690	broad.mit.edu	37	11	65988645	65988645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:65988645C>T	uc001oha.1	+	10	1354	c.1220C>T	c.(1219-1221)TCG>TTG	p.S407L		NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	407					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						GAGGGGATGTCGCAGTCCAGC	0.607													23	93					0	0	1	0	0
YIF1A	10897	broad.mit.edu	37	11	66052985	66052985	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66052985G>A	uc001ohk.3	-	6	690	c.508C>T	c.(508-510)CTG>TTG	p.L170L	YIF1A_uc001ohj.2_Silent_p.L27L	NM_020470	NP_065203	O95070	YIF1A_HUMAN	Yip1 interacting factor homolog	170	Extracellular (Potential).				protein transport|vesicle-mediated transport	centrosome|endoplasmic reticulum membrane|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane					0						CTTGCACACAGGCCCAGCACC	0.652													10	41					0	0	1	0	0
RIN1	9610	broad.mit.edu	37	11	66099956	66099956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66099956C>T	uc001ohn.1	-	10	2270	c.2143G>A	c.(2143-2145)GAG>AAG	p.E715K	RIN1_uc010roy.1_Missense_Mutation_p.E346K|RIN1_uc009yrd.1_Missense_Mutation_p.E408K|RIN1_uc010roz.1_Missense_Mutation_p.E610K|RIN1_uc010rpa.1_Missense_Mutation_p.E549K	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	715	Ras and 14-3-3 protein binding region.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CCCTCCTCCTCTGTCACAGCC	0.692													39	140					0	0	1	0	0
RIN1	9610	broad.mit.edu	37	11	66100171	66100171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66100171G>A	uc001ohn.1	-	10	2055	c.1928C>T	c.(1927-1929)ACC>ATC	p.T643I	RIN1_uc010roy.1_Missense_Mutation_p.T274I|RIN1_uc009yrd.1_Missense_Mutation_p.T336I|RIN1_uc010roz.1_Missense_Mutation_p.T538I|RIN1_uc010rpa.1_Missense_Mutation_p.T477I	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	643	Ras and 14-3-3 protein binding region.|Ras-associating.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CACGGCCAGGGTCTTGGAGGT	0.592													32	82					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191536	66191536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66191536G>A	uc001ohx.1	+	7	1351	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	NPAS4_uc010rpc.1_Missense_Mutation_p.R182Q	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	392					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GAGCTTCCCCGACCCTCCAAA	0.547													79	94					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66460725	66460725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66460725C>T	uc001ojd.2	-	23	4858	c.4786G>A	c.(4786-4788)GAT>AAT	p.D1596N		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1596	Spectrin 13.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCGGCGGCATCGCGGTAGAAC	0.627													16	54					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66468364	66468364	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66468364T>C	uc001ojd.2	-	16	3278	c.3206A>G	c.(3205-3207)GAC>GGC	p.D1069G		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1069	Spectrin 8.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCGCAAGAAGTCCTGCAGCCG	0.677													7	27					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66475056	66475056	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66475056G>A	uc001ojd.2	-	12	1656	c.1584C>T	c.(1582-1584)CTC>CTT	p.L528L		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	528	Spectrin 2.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCAGGTTGAGGAGGAGCCGCT	0.627													4	17					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66812087	66812087	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:66812087C>T	uc009yrl.2	+	6	1091	c.861C>T	c.(859-861)ATC>ATT	p.I287I	SYT12_uc001oju.2_Silent_p.I287I	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	287	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						TGGGGGAGATCCTGCTCTCCC	0.637													33	31					0	0	1	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67057896	67057896	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67057896A>G	uc001okc.1	+	4	580	c.69A>G	c.(67-69)GAA>GAG	p.E23E	ANKRD13D_uc001okd.1_Silent_p.E110E|ANKRD13D_uc001oke.1_Silent_p.E23E	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	23										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GCATTCCGGAACTGCTCAACA	0.622													2	5					0	0	1	0	0
CABP4	57010	broad.mit.edu	37	11	67223038	67223038	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67223038C>T	uc001olo.2	+	1	221	c.144C>T	c.(142-144)CTC>CTT	p.L48L	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_Intron	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	48					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			AGAGGGGGCTCCGAGGGTCTC	0.672													6	20					0	0	1	0	0
CABP4	57010	broad.mit.edu	37	11	67223192	67223192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67223192C>T	uc001olo.2	+	1	375	c.298C>T	c.(298-300)CGT>TGT	p.R100C	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_5'UTR	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	100					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCACCGACATCGTCCTGACTC	0.677													7	15					0	0	1	0	0
CABP4	57010	broad.mit.edu	37	11	67225861	67225861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67225861G>A	uc001olo.2	+	5	748	c.671G>A	c.(670-672)GGA>GAA	p.G224E	CABP4_uc001oln.2_Missense_Mutation_p.G119E	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	224	EF-hand 3.|2 (Potential).				visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GACAGGGATGGACGAATTACG	0.597													19	35					0	0	1	0	0
AIP	9049	broad.mit.edu	37	11	67257813	67257814	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67257813_67257814CC>TT	uc001olv.2	+	5	797_798	c.672_673CC>TT	c.(670-675)ATCCAG>ATTTAG	p.Q225*		NM_003977	NP_003968	O00170	AIP_HUMAN	aryl hydrocarbon receptor interacting protein	225					protein maturation by protein folding|protein targeting to mitochondrion	nucleus	signal transducer activity|transcription coactivator activity|transcription factor binding|unfolded protein binding				0						CTGAATGGATCCAGCTGGACCA	0.629									Familial_Isolated_Pituitary_Adenoma_				8	24					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433000	67433000	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:67433000G>A	uc001omr.2	-	7	901	c.462C>T	c.(460-462)TTC>TTT	p.F154F	ALDH3B2_uc001oms.2_Silent_p.F154F|ALDH3B2_uc009ysa.1_Silent_p.F154F	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	154					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TGAAGTAGCAGAACCAGGCCA	0.662													35	134					0	0	1	0	0
C11orf24	53838	broad.mit.edu	37	11	68029501	68029501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68029501G>A	uc001onr.3	-	4	1404	c.962C>T	c.(961-963)TCC>TTC	p.S321F	C11orf24_uc001ons.2_Missense_Mutation_p.S321F	NM_022338	NP_071733	Q96F05	CK024_HUMAN	hypothetical protein LOC53838 precursor	321	Extracellular (Potential).|Pro-rich.					integral to membrane					0						TGTCGTGGGGGACATGGCCTC	0.637													9	46					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68191088	68191088	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68191088G>A	uc001ont.2	+	14	3234	c.3159G>A	c.(3157-3159)CTG>CTA	p.L1053L	LRP5_uc009ysg.2_Silent_p.L463L	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1053	LDL-receptor class B 17.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TCCACAGGCTGAGCGGGGAAG	0.647													32	95					0	0	1	0	0
MTL5	9633	broad.mit.edu	37	11	68475844	68475844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68475844C>T	uc001ooc.2	-	10	1599	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	487					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CTTCCAAATTCCTCCAGGATC	0.483													11	69					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68552354	68552354	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68552354C>T	uc001oog.3	-	10	1262	c.1092G>A	c.(1090-1092)CAG>CAA	p.Q364Q	CPT1A_uc001oof.3_Silent_p.Q364Q|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	364	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	CCAGGATCCTCTGCATCTGCT	0.622													14	36					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68566742	68566742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68566742G>A	uc001oog.3	-	6	807	c.637C>T	c.(637-639)CTT>TTT	p.L213F	CPT1A_uc001oof.3_Missense_Mutation_p.L213F|CPT1A_uc009ysj.2_Missense_Mutation_p.L213F	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	213	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	CTTGGTCCAAGACCGACAGCA	0.403													11	51					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68704546	68704546	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:68704546G>A	uc001ook.1	+	13	2700	c.2598G>A	c.(2596-2598)AAG>AAA	p.K866K	IGHMBP2_uc001ool.1_Silent_p.K490K|IGHMBP2_uc001oom.1_Silent_p.K444K	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	866	Nuclear localization signal (Potential).|Poly-Lys.			K -> T (in Ref. 6; AAA58611).	cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AAAAGAAAAAGAAAAAAGCCA	0.572													10	42					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71155081	71155081	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:71155081C>T	uc001oqk.2	-	4	529	c.279G>A	c.(277-279)ACG>ACA	p.T93T	DHCR7_uc001oql.2_Silent_p.T93T	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	93			T -> M (in SLOS).		cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	CGGCTTTCCTCGTTATAGGTG	0.627									Smith-Lemli-Opitz_syndrome				8	25					0	0	1	0	0
NADSYN1	55191	broad.mit.edu	37	11	71212393	71212393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:71212393G>A	uc001oqn.2	+	21	2242	c.2116G>A	c.(2116-2118)GAC>AAC	p.D706N	NADSYN1_uc001oqo.2_Missense_Mutation_p.D446N|NADSYN1_uc001oqp.2_Missense_Mutation_p.D335N	NM_018161	NP_060631	Q6IA69	NADE_HUMAN	NAD synthetase 1	706	Ligase (By similarity).				NAD biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|NAD+ synthase (glutamine-hydrolyzing) activity|protein binding			ovary(2)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GGACGGCGTGGACTGAGGCCG	0.632													10	4					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276950	71276950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:71276950C>T	uc001oqt.1	+	1	342	c.317C>T	c.(316-318)TCT>TTT	p.S106F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	106	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGCTGTGGTTCTTGTGGGGGC	0.677													54	69					0	0	1	0	0
FOLR3	2352	broad.mit.edu	37	11	71850171	71850171	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:71850171A>G	uc001ory.1	+	3	511	c.461A>G	c.(460-462)AAC>AGC	p.N154S	FOLR3_uc001orx.1_Missense_Mutation_p.N112S			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	110					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	TGCTCACCCAACCTGGGGCCC	0.582													9	35					0	0	1	0	0
FOLR3	2352	broad.mit.edu	37	11	71850849	71850849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:71850849C>T	uc001ory.1	+	5	888	c.838C>T	c.(838-840)CCG>TCG	p.P280S	FOLR3_uc001orx.1_Missense_Mutation_p.P238S			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	236					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	TGCTGGGGCCCCGTCTCGTGG	0.532													27	25					0	0	1	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73021133	73021133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:73021133G>A	uc001otu.2	+	1	1471	c.1450G>A	c.(1450-1452)GAG>AAG	p.E484K		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	484					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						AGACCTTTCAGAGCTGAGGGT	0.577													24	30					0	0	1	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73070878	73070878	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:73070878G>A	uc001otu.2	+	10	4109	c.4088_splice	c.e10-1	p.G1363_splice		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17						actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TCTCCCTCTAGGGGCATCCCA	0.597													7	46					0	0	1	0	0
PPME1	51400	broad.mit.edu	37	11	73950200	73950200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:73950200G>A	uc001ouw.2	+	9	832	c.733G>A	c.(733-735)GAA>AAA	p.E245K	PPME1_uc009yty.2_Missense_Mutation_p.E115K|PPME1_uc001oux.2_Missense_Mutation_p.E58K	NM_016147	NP_057231	Q9Y570	PPME1_HUMAN	protein phosphatase methylesterase 1	245					protein demethylation		carboxylesterase activity|protein C-terminal methylesterase activity|protein phosphatase 2A binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0	Breast(11;3.29e-05)					TACAAGTCCAGAAGGCTCAAA	0.373													4	28					0	0	1	0	0
NEU3	10825	broad.mit.edu	37	11	74716749	74716749	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:74716749A>G	uc001ovw.2	+	3	754	c.598A>G	c.(598-600)ATC>GTC	p.I200V	NEU3_uc001ovv.2_Missense_Mutation_p.I190V|NEU3_uc010rrl.1_Missense_Mutation_p.I91V	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	200										ovary(2)	2						AGGTCATGGCATCCAGCTGCA	0.537													53	76					0	0	1	0	0
MAP6	4135	broad.mit.edu	37	11	75298411	75298411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:75298411G>A	uc001owu.2	-	4	2200	c.2135C>T	c.(2134-2136)TCC>TTC	p.S712F		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	712	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					ATTCTTCACGGACTCGGGGAC	0.498													34	120					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75438510	75438510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:75438510C>T	uc010rru.1	+	3	301	c.301C>T	c.(301-303)CGG>TGG	p.R101W	MOGAT2_uc001oww.1_Missense_Mutation_p.R101W|MOGAT2_uc010rrv.1_Missense_Mutation_p.R19W	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	101					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					GGACCCCTCTCGGAACTACAT	0.463													17	20					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76900507	76900507	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:76900507T>C	uc001oyb.2	+	28	3894	c.3622T>C	c.(3622-3624)TTT>CTT	p.F1208L	MYO7A_uc010rsm.1_Missense_Mutation_p.F1197L|MYO7A_uc001oyc.2_Missense_Mutation_p.F1208L|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.F419L	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1208	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CTCCGAGAAGTTTGTCAAGGT	0.622													26	106					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76924925	76924925	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:76924925C>T	uc001oyb.2	+	48	6731	c.6459C>T	c.(6457-6459)CCC>CCT	p.P2153P	MYO7A_uc001oyc.2_Silent_p.P2113P|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	2153	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CCACTCATCCCTTCACCAAGA	0.592													27	72					0	0	1	0	0
GDPD4	220032	broad.mit.edu	37	11	76956394	76956394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:76956394G>A	uc001oyf.2	-	11	1269	c.1018C>T	c.(1018-1020)CCT>TCT	p.P340S		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	340	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						TGTCTGAGAGGATGTTTTGGT	0.393													16	73					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77413025	77413025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:77413025C>T	uc001oyn.2	-	6	1369	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K	RSF1_uc001oym.2_Missense_Mutation_p.E165K	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	417					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			TGTTTTATTTCATCTTTCAAA	0.358													14	51					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77458147	77458147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:77458147C>T	uc001oyn.2	-	3	426	c.306G>A	c.(304-306)TGG>TGA	p.W102*		NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	102					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			TCTCCCATGCCCAGGTACTGT	0.323													8	35					0	0	1	0	0
KCTD21	283219	broad.mit.edu	37	11	77885238	77885238	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:77885238C>T	uc001ozb.2	-	2	438	c.363G>A	c.(361-363)CAG>CAA	p.Q121Q		NM_001029859	NP_001025030	Q4G0X4	KCD21_HUMAN	potassium channel tetramerisation domain	121						voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.46e-24)			AGTGGACCGTCTGCACACGCT	0.577													12	33					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78380432	78380432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:78380432G>A	uc001ozl.3	-	32	7421	c.6958C>T	c.(6958-6960)CCC>TCC	p.P2320S	ODZ4_uc001ozk.3_Missense_Mutation_p.P545S|ODZ4_uc009yvb.1_Missense_Mutation_p.P904S	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2320	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ACCTTGGTGGGGTTGGTCAGG	0.592													64	65					0	0	1	0	0
PRCP	5547	broad.mit.edu	37	11	82536019	82536019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:82536019G>A	uc001ozs.2	-	9	1533	c.1420C>T	c.(1420-1422)CGC>TGC	p.R474C	PRCP_uc001ozr.2_Missense_Mutation_p.R495C	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	474					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						TCCAAGGAGCGGGCTAACAGC	0.458													13	37					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83497758	83497758	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:83497758C>T	uc001paj.2	-	13	1788	c.1485G>A	c.(1483-1485)ACG>ACA	p.T495T	DLG2_uc001pai.2_Silent_p.T392T|DLG2_uc010rsy.1_Silent_p.T462T|DLG2_uc010rsz.1_Silent_p.T495T|DLG2_uc010rta.1_Silent_p.T495T|DLG2_uc001pak.2_Silent_p.T600T|DLG2_uc010rtb.1_Silent_p.T462T|DLG2_uc001pal.1_Silent_p.T495T|DLG2_uc001pam.1_Silent_p.T534T	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	495	PDZ 3.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GTGCTATAATCGTCACTGTCT	0.453													13	39					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83674049	83674049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:83674049C>T	uc001paj.2	-	9	1207	c.904G>A	c.(904-906)GAA>AAA	p.E302K	DLG2_uc001pai.2_Missense_Mutation_p.E251K|DLG2_uc010rsy.1_Missense_Mutation_p.E269K|DLG2_uc010rsz.1_Missense_Mutation_p.E302K|DLG2_uc010rta.1_Missense_Mutation_p.E302K|DLG2_uc001pak.2_Missense_Mutation_p.E407K|DLG2_uc010rtb.1_Missense_Mutation_p.E269K|DLG2_uc001pal.1_Missense_Mutation_p.E302K|DLG2_uc001pam.1_Missense_Mutation_p.E341K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	302						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				AGATGGTTTTCCATTGGTGGA	0.413													38	42					0	0	1	0	0
CREBZF	58487	broad.mit.edu	37	11	85375667	85375667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:85375667C>T	uc001pas.2	-	1	516	c.253G>A	c.(253-255)GAG>AAG	p.E85K	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	85					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				ATCGCCTCCTCCTCCATCTCC	0.692													45	64					0	0	1	0	0
CCDC81	60494	broad.mit.edu	37	11	86119203	86119203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:86119203G>A	uc001pbx.1	+	9	1432	c.1004G>A	c.(1003-1005)CGA>CAA	p.R335Q	CCDC81_uc001pbw.1_Missense_Mutation_p.R245Q|CCDC81_uc010rtq.1_Missense_Mutation_p.R118Q|CCDC81_uc001pby.1_Intron	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	335										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				CGAGCACAACGAAATTCCCTG	0.393													7	16					0	0	1	0	0
TMEM135	65084	broad.mit.edu	37	11	87032350	87032350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:87032350C>T	uc001pch.2	+	15	1375	c.1352C>T	c.(1351-1353)CCA>CTA	p.P451L	TMEM135_uc010rtt.1_Missense_Mutation_p.P312L|TMEM135_uc001pci.2_Missense_Mutation_p.P429L	NM_022918	NP_075069	Q86UB9	TM135_HUMAN	transmembrane protein 135	451						integral to membrane					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ACTGTAACACCAGAGTTGCCC	0.398													17	46					0	0	1	0	0
UBTFL1	642623	broad.mit.edu	37	11	89819618	89819618	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:89819618C>T	uc010rub.1	+	1	501	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_001143975	NP_001137447	P0CB47	UBFL1_HUMAN	upstream binding transcription factor, RNA	167	HMG box 1.				multicellular organismal development	cytoplasm|nucleus	DNA binding				0						TTGCTCGATTCAGGGAAGAAC	0.388													3	21					0	0	1	0	0
NAALAD2	10003	broad.mit.edu	37	11	89883650	89883650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:89883650G>A	uc001pdf.3	+	5	593	c.484G>A	c.(484-486)GGA>AGA	p.G162R	NAALAD2_uc009yvx.2_Missense_Mutation_p.G162R|NAALAD2_uc009yvy.2_Missense_Mutation_p.G162R|NAALAD2_uc001pdd.2_Missense_Mutation_p.G162R|NAALAD2_uc001pde.2_Missense_Mutation_p.G162R	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	162	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTCCCTATAGGGAGATCTTGT	0.303													8	15					0	0	1	0	0
CHORDC1	26973	broad.mit.edu	37	11	89944431	89944431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:89944431C>T	uc001pdg.2	-	5	795	c.385G>A	c.(385-387)GCA>ACA	p.A129T	CHORDC1_uc009yvz.2_Missense_Mutation_p.A110T	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	129	Interaction with HSP90AA1 and HSP90AB1 (By similarity).				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				TTATCAAGTGCTTGTTTTAGG	0.289													40	70					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534320	92534320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:92534320C>T	uc001pdj.3	+	9	8158	c.8141C>T	c.(8140-8142)TCC>TTC	p.S2714F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2714	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTCAGTATTCCTTTACCATT	0.498										TCGA Ovarian(4;0.039)			162	588					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534801	92534801	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:92534801G>A	uc001pdj.3	+	9	8639	c.8622G>A	c.(8620-8622)TGG>TGA	p.W2874*		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2874	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACACGGGCTGGATCAGTACCT	0.527										TCGA Ovarian(4;0.039)			103	369					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92703056	92703056	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:92703056C>T	uc001pdk.1	+	1	268	c.165C>T	c.(163-165)GTC>GTT	p.V55V		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	55	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CCGTGGACGTCGTGGGCAACC	0.692													34	37					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93097404	93097404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:93097404C>T	uc001pdq.2	+	5	476	c.376C>T	c.(376-378)CCA>TCA	p.P126S	CCDC67_uc001pdo.1_Missense_Mutation_p.P126S|CCDC67_uc001pdp.2_Missense_Mutation_p.P126S	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	126	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AAAAGAATTACCACACCTTAA	0.294													15	7					0	0	1	0	0
FOLR4	390243	broad.mit.edu	37	11	94040632	94040632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:94040632C>T	uc010rud.1	+	4	506	c.506C>T	c.(505-507)TCC>TTC	p.S169F		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	176						extracellular region	folic acid binding|receptor activity			ovary(1)	1						CTCCCTTTCTCCCATTACTTC	0.587													18	16					0	0	1	0	0
KDM4DL	390245	broad.mit.edu	37	11	94759406	94759407	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:94759406_94759407CC>TT	uc010ruf.1	+	1	985_986	c.685_686CC>TT	c.(685-687)CCA>TTA	p.P229L		NM_001161630	NP_001155102	B2RXH2	KD4DL_HUMAN	lysine (K)-specific demethylase 4D-like	229	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GGAGCTCTTCCCAGACATTTCT	0.55													5	12					0	0	1	0	0
ENDOD1	23052	broad.mit.edu	37	11	94861922	94861922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:94861922C>T	uc001pfh.2	+	2	757	c.682C>T	c.(682-684)CCT>TCT	p.P228S		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	228						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				TTGTGCTGTCCCTGGAGGAGG	0.493													12	25					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99690287	99690287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:99690287C>T	uc001pga.2	+	4	407	c.68C>T	c.(67-69)TCT>TTT	p.S23F	CNTN5_uc009ywv.1_Missense_Mutation_p.S23F|CNTN5_uc001pfz.2_Missense_Mutation_p.S23F|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	23					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATTCAAAATCTCTTCCTGGT	0.323													7	37					0	0	1	0	0
C11orf70	85016	broad.mit.edu	37	11	101946634	101946634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:101946634G>A	uc001pgp.2	+	5	494	c.466G>A	c.(466-468)GAA>AAA	p.E156K	C11orf70_uc001pgo.2_Silent_p.*100*|C11orf70_uc001pgq.2_Missense_Mutation_p.E118K	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	156										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		AGAAAAATATGAAATATTCAG	0.343													9	17					0	0	1	0	0
BIRC3	330	broad.mit.edu	37	11	102207793	102207793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:102207793G>A	uc001pgx.2	+	10	1997	c.1775G>A	c.(1774-1776)AGG>AAG	p.R592K		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	592	RING-type.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		CCTATTTGTAGGAGTACAATC	0.323			T	MALT1	MALT								8	11					0	0	1	0	0
MMP7	4316	broad.mit.edu	37	11	102394020	102394020	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:102394020T>C	uc001phb.2	-	5	773	c.726A>G	c.(724-726)CAA>CAG	p.Q242Q		NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	242					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		GTTTAAAATTTTGGGGATCTC	0.353													11	24					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105789577	105789577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:105789577G>A	uc001pix.2	+	11	1855	c.1409G>A	c.(1408-1410)GGA>GAA	p.G470E	GRIA4_uc001piw.2_Missense_Mutation_p.G470E	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	470	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity	p.G470E(1)		ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GTCCCTGATGGAAAATATGGA	0.353													15	2					0	0	1	0	0
CWF19L2	143884	broad.mit.edu	37	11	107207325	107207325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:107207325G>A	uc010rvp.1	-	15	2347	c.2317C>T	c.(2317-2319)CTT>TTT	p.L773F	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	773							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TCCTTGGGAAGAGGAATACAT	0.323													8	19					0	0	1	0	0
ELMOD1	55531	broad.mit.edu	37	11	107506373	107506373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:107506373C>T	uc010rvs.1	+	6	706	c.302C>T	c.(301-303)TCT>TTT	p.S101F	ELMOD1_uc001pjm.2_Missense_Mutation_p.S101F|ELMOD1_uc010rvt.1_Missense_Mutation_p.S95F	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	101					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		CTGGGAATCTCTCTTCAGGCT	0.438													22	38					0	0	1	0	0
ELMOD1	55531	broad.mit.edu	37	11	107518278	107518278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:107518278C>T	uc010rvs.1	+	7	909	c.505C>T	c.(505-507)CCT>TCT	p.P169S	ELMOD1_uc001pjm.2_Missense_Mutation_p.P169S|ELMOD1_uc010rvt.1_Missense_Mutation_p.P163S	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	169	ELMO.				phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		AGGTGATGATCCTAAAACAGA	0.403													15	10					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108382448	108382448	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:108382448T>A	uc001pkk.2	-	6	3897	c.3786A>T	c.(3784-3786)AAA>AAT	p.K1262N	EXPH5_uc010rvy.1_Missense_Mutation_p.K1074N|EXPH5_uc010rvz.1_Missense_Mutation_p.K1106N|EXPH5_uc010rwa.1_Missense_Mutation_p.K1186N	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1262					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TACAGAATTTTTTGCTGGGTT	0.353													27	7					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110450793	110450793	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:110450793C>T	uc001pkz.1	-	16	3162	c.2877G>A	c.(2875-2877)CAG>CAA	p.Q959Q	ARHGAP20_uc001pky.1_Silent_p.Q936Q|ARHGAP20_uc009yyb.1_Silent_p.Q923Q|ARHGAP20_uc001pla.1_Silent_p.Q923Q|ARHGAP20_uc001plb.2_Silent_p.Q502Q	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	959	Ser-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GTTCAGAAATCTGAGAAAAAG	0.473													23	15					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110482075	110482075	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:110482075C>T	uc001pkz.1	-	8	951	c.666G>A	c.(664-666)GCG>GCA	p.A222A	ARHGAP20_uc001pky.1_Silent_p.A199A|ARHGAP20_uc009yyb.1_Silent_p.A186A|ARHGAP20_uc001pla.1_Silent_p.A186A	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	222	Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TAACTTCATTCGCTGTATCTG	0.219													6	10					0	0	1	0	0
BCO2	83875	broad.mit.edu	37	11	112070428	112070428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:112070428C>T	uc001pnf.2	+	6	860	c.743C>T	c.(742-744)TCC>TTC	p.S248F	BCO2_uc001pne.1_Missense_Mutation_p.S75F|BCO2_uc001png.2_Missense_Mutation_p.S175F|BCO2_uc001pnh.2_Missense_Mutation_p.S214F|BCO2_uc010rwt.1_Missense_Mutation_p.S143F|BCO2_uc009yyn.2_Missense_Mutation_p.S214F|BCO2_uc001pni.2_Missense_Mutation_p.S214F	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	248					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TCAGGTTTCTCCTATAAGGTT	0.398													17	29					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113860197	113860197	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:113860197C>T	uc010rxb.1	+	8	1496	c.1263C>T	c.(1261-1263)AAC>AAT	p.N421N	HTR3A_uc010rxa.1_Silent_p.N389N|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Silent_p.N368N	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	383	Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CCATGGGAAACCACTGCAGCC	0.592													24	44					0	0	1	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934891	113934891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:113934891C>T	uc001pop.2	+	2	1133	c.869C>T	c.(868-870)ACC>ATC	p.T290I	ZBTB16_uc001poo.1_Missense_Mutation_p.T290I|ZBTB16_uc001poq.2_Missense_Mutation_p.T290I	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	290					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		AGCGTCATCACCAGTGCTAGG	0.657													14	16					0	0	1	0	0
FAM55B	120406	broad.mit.edu	37	11	114569187	114569187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:114569187G>A	uc009yyy.2	+	3	651	c.553G>A	c.(553-555)GGC>AGC	p.G185S		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	185						integral to membrane				ovary(1)	1						GTTCTGGGAGGGCCAGGTTTC	0.547													10	2					0	0	1	0	0
CADM1	23705	broad.mit.edu	37	11	115102181	115102181	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:115102181G>A	uc001ppi.3	-	4	583	c.454C>T	c.(454-456)CAG>TAG	p.Q152*	CADM1_uc001ppf.3_Nonsense_Mutation_p.Q152*|CADM1_uc001ppk.3_Nonsense_Mutation_p.Q152*|CADM1_uc001ppj.3_Nonsense_Mutation_p.Q152*|CADM1_uc001ppl.2_Nonsense_Mutation_p.Q152*	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	152	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		GTGTCTTTCTGGATATCGATC	0.428													38	7					0	0	1	0	0
CEP164	22897	broad.mit.edu	37	11	117280369	117280369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:117280369C>T	uc001prc.2	+	30	3931	c.3784C>T	c.(3784-3786)CAC>TAC	p.H1262Y	CEP164_uc001prb.2_Missense_Mutation_p.H1257Y|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.H687Y	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1262					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		CCGCAAGATCCACGGGCTTAG	0.617													32	43					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117299146	117299146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:117299146C>T	uc001prh.1	-	33	6242	c.6240G>A	c.(6238-6240)ATG>ATA	p.M2080I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	2020	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGGAGCCCCCCATTTTGGTGT	0.706													6	10					0	0	1	0	0
UBE4A	9354	broad.mit.edu	37	11	118267050	118267050	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:118267050C>T	uc001psw.2	+	20	3225	c.3096C>T	c.(3094-3096)AAC>AAT	p.N1032N	UBE4A_uc001psv.2_Silent_p.N1039N	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	1032	U-box.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		ATCCCTTTAACCGTAGTCCCC	0.448													15	24					0	0	1	0	0
CXCR5	643	broad.mit.edu	37	11	118754686	118754686	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:118754686G>A	uc001pue.3	+	1	146	c.36G>A	c.(34-36)GAG>GAA	p.E12E		NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	12	Extracellular (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TGGACCTCGAGAACCTGGAGG	0.582													8	0					0	0	1	0	0
C2CD2L	9854	broad.mit.edu	37	11	118986927	118986927	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:118986927C>T	uc001pvo.2	+	14	2441	c.2082C>T	c.(2080-2082)TCC>TCT	p.S694S	C2CD2L_uc001pvn.2_Silent_p.S695S	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	694						integral to membrane					0						CCTTCAAATCCAAACCCAAGG	0.577													17	4					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119031635	119031635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:119031635G>A	uc001pvs.2	+	15	2096	c.1760G>A	c.(1759-1761)CGA>CAA	p.R587Q	ABCG4_uc009zar.2_Missense_Mutation_p.R587Q	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	587	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GGCATGGAGCGAGGAGACCTG	0.567													12	1					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121016577	121016577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:121016577C>T	uc010rzo.1	+	11	3857	c.3857C>T	c.(3856-3858)CCG>CTG	p.P1286L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1286	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GACCGCTGTCCGTCCTGTGCC	0.572													25	31					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122805454	122805454	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:122805454C>T	uc001pym.2	+	5	1602	c.1305C>T	c.(1303-1305)CTC>CTT	p.L435L		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	435										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GCCACAATCTCAAAGAAACCT	0.398													23	4					0	0	1	0	0
OR6M1	390261	broad.mit.edu	37	11	123676665	123676665	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123676665C>T	uc010rzz.1	-	1	393	c.393G>A	c.(391-393)ACG>ACA	p.T131T		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		TCATGATGACCGTGTAGTGCA	0.517													10	15					0	0	1	0	0
OR8D4	338662	broad.mit.edu	37	11	123777295	123777295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123777295C>T	uc010saa.1	+	1	157	c.157C>T	c.(157-159)CGT>TGT	p.R53C		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		TAGGCTGAATCGTCAACTTCA	0.408													63	10					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810601	123810601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123810601C>T	uc001pzk.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCTACCATTTCCTTTGGTGGA	0.468													42	4					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810885	123810885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123810885G>A	uc001pzk.1	+	1	562	c.562G>A	c.(562-564)GCC>ACC	p.A188T		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GATCAAATTGGCCTGCACAGA	0.468													44	48					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123811241	123811241	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123811241G>A	uc001pzk.1	+	1	918	c.918G>A	c.(916-918)AAG>AAA	p.K306K		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GGAGGAAAAAGGACCCTATTG	0.493													13	33					0	0	1	0	0
OR10S1	219873	broad.mit.edu	37	11	123848249	123848249	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123848249G>A	uc001pzm.1	-	1	150	c.150C>T	c.(148-150)ATC>ATT	p.I50I		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	50	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAGCCACAGTGATGCTGTAGA	0.537													7	12					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886642	123886642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123886642C>T	uc010sac.1	+	1	361	c.361C>T	c.(361-363)CGC>TGC	p.R121C		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GTCCTATGATCGCTACTTGGC	0.572													31	26					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886864	123886864	+	Missense_Mutation	SNP	G	A	A	rs141011157		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123886864G>A	uc010sac.1	+	1	583	c.583G>A	c.(583-585)GTG>ATG	p.V195M		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CTCAGCCAACGTGATGGTCAT	0.542													57	10					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909126	123909126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123909126C>T	uc001pzq.1	-	1	583	c.583G>A	c.(583-585)GAG>AAG	p.E195K		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ATGACCATCTCGTTGGCTGAG	0.542													17	131					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909299	123909299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:123909299C>T	uc001pzq.1	-	1	410	c.410G>A	c.(409-411)GGG>GAG	p.G137E		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACACGAGCGCCCAGTCATCAT	0.567													38	60					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180576	124180576	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:124180576G>A	uc010sag.1	-	1	87	c.87C>T	c.(85-87)CTC>CTT	p.L29L		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CCAGGAACAGGAGGAAGAGGG	0.478													33	12					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124180579	124180579	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:124180579G>A	uc010sag.1	-	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GGAACAGGAGGAAGAGGGGCA	0.473													14	32					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124252426	124252426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:124252426C>T	uc010sai.1	-	1	814	c.814G>A	c.(814-816)GTT>ATT	p.V272I		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ACAGAAGAAACTTTTCCCTGC	0.418													40	3					0	0	1	0	0
CDON	50937	broad.mit.edu	37	11	125887045	125887045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:125887045G>A	uc009zbw.2	-	6	994	c.866C>T	c.(865-867)TCC>TTC	p.S289F	CDON_uc001qdc.3_Missense_Mutation_p.S289F|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Missense_Mutation_p.S289F	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	289	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		CGCCATGCAGGAATAGTTTCC	0.433													9	17					0	0	1	0	0
FOXRED1	55572	broad.mit.edu	37	11	126143258	126143259	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:126143258_126143259CC>TT	uc001qdi.2	+	4	492_493	c.445_446CC>TT	c.(445-447)CCC>TTC	p.P149F	FOXRED1_uc010sbn.1_5'UTR|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_5'UTR|FOXRED1_uc010sbq.1_Missense_Mutation_p.S17F|FOXRED1_uc001qdj.2_5'UTR|FOXRED1_uc010sbr.1_Missense_Mutation_p.P135F|FOXRED1_uc001qdk.2_5'UTR	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	149						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		CGATGCTCCTCCCCTGGACCTC	0.554													20	40					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128628127	128628127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:128628127C>T	uc010sbu.1	+	2	477	c.136C>T	c.(136-138)CAC>TAC	p.H46Y	FLI1_uc010sbt.1_5'UTR|FLI1_uc010sbv.1_Missense_Mutation_p.H13Y|FLI1_uc009zci.2_5'UTR|FLI1_uc001qen.2_Missense_Mutation_p.H13Y	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	46					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		CGGGCAGCCCCACAAGATCAA	0.602			T	EWSR1	Ewing sarcoma								9	0					0	0	1	0	0
BARX2	8538	broad.mit.edu	37	11	129306719	129306719	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:129306719C>T	uc001qfc.3	+	2	311	c.261C>T	c.(259-261)GTC>GTT	p.V87V		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	87											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCCACCTGGTCCCTGCCACCC	0.677													26	67					0	0	1	0	0
TMEM45B	120224	broad.mit.edu	37	11	129727269	129727269	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:129727269A>G	uc001qfe.1	+	5	693	c.632A>G	c.(631-633)AAC>AGC	p.N211S	TMEM45B_uc001qff.1_Missense_Mutation_p.N211S	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	211						integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		GATGATGCCAACCTCATGTTC	0.498													36	9					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130067816	130067816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:130067816G>A	uc001qfw.2	+	12	1628	c.1435G>A	c.(1435-1437)GAC>AAC	p.D479N		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	479	Extracellular (Potential).|LDL-receptor class A 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	CGACTGCACCGACCACAGCGA	0.697													6	1					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790959	133790959	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:133790959G>A	uc001qgx.3	-	18	2892	c.2661C>T	c.(2659-2661)CCC>CCT	p.P887P		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	887	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGCGGAACTCGGGGTACATGT	0.652													29	40					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134051017	134051017	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134051017G>A	uc001qhd.1	-	20	3120	c.2514C>T	c.(2512-2514)ATC>ATT	p.I838I	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	838					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		CCTTGAGAACGATGTTGGAGA	0.507													11	11					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134151287	134151287	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134151287C>T	uc009zdf.2	+	4	739	c.379C>T	c.(379-381)CTG>TTG	p.L127L	GLB1L3_uc010scs.1_Silent_p.L127L|GLB1L3_uc010sct.1_5'UTR	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	127					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TCCGTGGAACCTGCATGAGCC	0.493													34	62					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134151925	134151925	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134151925C>T	uc009zdf.2	+	5	798	c.438C>T	c.(436-438)TTC>TTT	p.F146F	GLB1L3_uc010scs.1_Silent_p.F146F|GLB1L3_uc010sct.1_5'UTR	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	146					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		CTAGGGCCTTCGTCCTGATGG	0.672													4	9					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134179596	134179596	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134179596C>T	uc009zdf.2	+	11	1398	c.1038C>T	c.(1036-1038)AAC>AAT	p.N346N	GLB1L3_uc010scu.1_Silent_p.N47N|GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	346					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		GTGGAACCAACTTTGGTTTCA	0.478													9	3					0	0	1	0	0
GLB1L3	112937	broad.mit.edu	37	11	134182771	134182771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134182771C>T	uc009zdf.2	+	15	1850	c.1490C>T	c.(1489-1491)CCT>CTT	p.P497L	GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	497					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		CTGCACATTCCTGAACTCAGG	0.517													8	5					0	0	1	0	0
GLB1L2	89944	broad.mit.edu	37	11	134214297	134214297	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134214297C>T	uc001qhp.2	+	3	489	c.301C>T	c.(301-303)CTG>TTG	p.L101L	GLB1L2_uc009zdg.1_5'Flank	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	101					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		TCCGTGGAACCTGCATGAGCC	0.468													9	100					0	0	1	0	0
B3GAT1	27087	broad.mit.edu	37	11	134257515	134257515	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:134257515G>A	uc001qhq.2	-	3	300	c.39C>T	c.(37-39)ATC>ATT	p.I13I	B3GAT1_uc001qhr.2_Silent_p.I13I|B3GAT1_uc010scv.1_Silent_p.I26I	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	13	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		AGGGCAGCACGATGAGGACGA	0.622													16	24					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	344305	344305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:344305C>T	uc001qic.1	-	7	835	c.782G>A	c.(781-783)GGA>GAA	p.G261E	SLC6A13_uc009zdj.1_Missense_Mutation_p.G261E|SLC6A13_uc010sdl.1_Missense_Mutation_p.G169E|SLC6A13_uc010sdm.1_Missense_Mutation_p.G142E	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	261					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AAACTGAATTCCTTGGGCTGC	0.557													19	64					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662826	662826	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:662826G>A	uc001qii.1	+	14	1737	c.1737G>A	c.(1735-1737)CGG>CGA	p.R579R	B4GALNT3_uc001qij.1_Silent_p.R482R|B4GALNT3_uc001qik.1_Silent_p.R128R	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	579	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			ACAGGATGCGGCCTCAGGCCC	0.577													17	27					0	0	1	0	0
WNT5B	81029	broad.mit.edu	37	12	1741960	1741960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:1741960G>A	uc009zdq.2	+	3	459	c.217G>A	c.(217-219)GGG>AGG	p.G73R	WNT5B_uc001qjj.2_Missense_Mutation_p.G73R|WNT5B_uc001qjk.2_Missense_Mutation_p.G73R|WNT5B_uc001qjl.2_Missense_Mutation_p.G73R	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	73				G -> R (in Ref. 1; AAG38659).	angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			GGCCTACATAGGGGAGGGAGC	0.597													4	111					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1994041	1994041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:1994041C>T	uc001qjp.2	-	11	1396	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.E308K	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	389	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TGCTTGGCCTCTTGGAACTGT	0.612													6	16					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2706434	2706434	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2706434C>T	uc009zdu.1	+	21	3145	c.2832C>T	c.(2830-2832)TTC>TTT	p.F944F	CACNA1C_uc009zdv.1_Silent_p.F941F|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Silent_p.F944F|CACNA1C_uc001qkd.2_Silent_p.F944F|CACNA1C_uc001qkg.2_Silent_p.F944F|CACNA1C_uc009zdw.1_Silent_p.F944F|CACNA1C_uc001qkh.2_Silent_p.F944F|CACNA1C_uc001qkl.2_Silent_p.F944F|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Silent_p.F944F|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Silent_p.F944F|CACNA1C_uc001qks.2_Silent_p.F944F|CACNA1C_uc001qkt.2_Silent_p.F944F|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Silent_p.F680F|CACNA1C_uc001qkj.1_Silent_p.F680F|CACNA1C_uc001qkk.1_Silent_p.F680F|CACNA1C_uc001qkm.1_Silent_p.F680F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	944	III.|Helical; Name=S2 of repeat III; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CCACCATTTTCACCATTGAAA	0.493													66	73					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2717743	2717743	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2717743G>A	uc009zdu.1	+	28	3796	c.3483G>A	c.(3481-3483)GAG>GAA	p.E1161E	CACNA1C_uc009zdv.1_Silent_p.E1138E|CACNA1C_uc001qkb.2_Silent_p.E1141E|CACNA1C_uc001qkc.2_Silent_p.E1141E|CACNA1C_uc001qke.2_Silent_p.E1141E|CACNA1C_uc001qkf.2_Silent_p.E1141E|CACNA1C_uc001qjz.2_Silent_p.E1141E|CACNA1C_uc001qkd.2_Silent_p.E1141E|CACNA1C_uc001qkg.2_Silent_p.E1141E|CACNA1C_uc009zdw.1_Silent_p.E1141E|CACNA1C_uc001qkh.2_Silent_p.E1141E|CACNA1C_uc001qkl.2_Silent_p.E1161E|CACNA1C_uc001qkn.2_Silent_p.E1141E|CACNA1C_uc001qko.2_Silent_p.E1161E|CACNA1C_uc001qkp.2_Silent_p.E1141E|CACNA1C_uc001qkr.2_Silent_p.E1141E|CACNA1C_uc001qku.2_Silent_p.E1141E|CACNA1C_uc001qkq.2_Silent_p.E1141E|CACNA1C_uc001qks.2_Silent_p.E1141E|CACNA1C_uc001qkt.2_Silent_p.E1141E|CACNA1C_uc001qka.1_Silent_p.E676E|CACNA1C_uc001qki.1_Silent_p.E877E|CACNA1C_uc001qkj.1_Silent_p.E877E|CACNA1C_uc001qkk.1_Silent_p.E877E|CACNA1C_uc001qkm.1_Silent_p.E877E	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1161	Extracellular (Potential).|III.|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACCGTGTGGAGatctccatct	0.363													3	13					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2764357	2764357	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2764357G>A	uc009zdu.1	+	36	4642	c.4329G>A	c.(4327-4329)CGG>CGA	p.R1443R	CACNA1C_uc009zdv.1_Silent_p.R1392R|CACNA1C_uc001qkb.2_Silent_p.R1395R|CACNA1C_uc001qkc.2_Silent_p.R1395R|CACNA1C_uc001qke.2_Silent_p.R1384R|CACNA1C_uc001qkf.2_Silent_p.R1384R|CACNA1C_uc001qjz.2_Silent_p.R1395R|CACNA1C_uc001qkd.2_Silent_p.R1395R|CACNA1C_uc001qkg.2_Silent_p.R1382R|CACNA1C_uc009zdw.1_Silent_p.R1417R|CACNA1C_uc001qkh.2_Silent_p.R1384R|CACNA1C_uc001qkl.2_Silent_p.R1443R|CACNA1C_uc001qkn.2_Silent_p.R1395R|CACNA1C_uc001qko.2_Silent_p.R1415R|CACNA1C_uc001qkp.2_Silent_p.R1395R|CACNA1C_uc001qkr.2_Silent_p.R1412R|CACNA1C_uc001qku.2_Silent_p.R1395R|CACNA1C_uc001qkq.2_Silent_p.R1423R|CACNA1C_uc001qks.2_Silent_p.R1395R|CACNA1C_uc001qkt.2_Silent_p.R1395R|CACNA1C_uc001qki.1_Silent_p.R1131R|CACNA1C_uc001qkj.1_Silent_p.R1131R|CACNA1C_uc001qkk.1_Silent_p.R1131R|CACNA1C_uc001qkm.1_Silent_p.R1120R|CACNA1C_uc010sea.1_Silent_p.R86R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1443	Extracellular (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGATCAACCGGAACAACAACT	0.502													5	24					0	0	1	0	0
ITFG2	55846	broad.mit.edu	37	12	2933306	2933306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2933306C>T	uc001qlb.1	+	12	1355	c.1291C>T	c.(1291-1293)CAT>TAT	p.H431Y	ITFG2_uc010seb.1_Missense_Mutation_p.H254Y|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	431											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			AACGCTCTACCATCCAGACCA	0.592													19	83					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2983234	2983235	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2983234_2983235GG>AA	uc001qlf.2	-	2	675_676	c.410_411CC>TT	c.(409-411)ACC>ATT	p.T137I	FOXM1_uc001qle.2_Missense_Mutation_p.T137I|FOXM1_uc001qlg.2_Missense_Mutation_p.T137I|FOXM1_uc009zea.2_Missense_Mutation_p.T137I|FOXM1_uc009zeb.2_Missense_Mutation_p.T137I	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	137					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			AGGTCTCCAGGGTCACTTCTGT	0.545													54	90					0	0	1	0	0
C12orf32	83695	broad.mit.edu	37	12	2997420	2997420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:2997420C>T	uc001qlh.2	+	3	680	c.512C>T	c.(511-513)CCC>CTC	p.P171L	TULP3_uc010sef.1_Intron|TULP3_uc009zec.1_5'Flank|TULP3_uc010seg.1_5'Flank|TULP3_uc001qlj.2_5'Flank|TULP3_uc010seh.1_5'Flank|TULP3_uc010sei.1_5'Flank|C12orf32_uc010see.1_Missense_Mutation_p.P157L|C12orf32_uc001qli.2_Missense_Mutation_p.P32L	NR_027363				RecName: Full=Uncharacterized protein C12orf32;												0			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			GAACTCATTCCCCAAGATCAG	0.502													64	52					0	0	1	0	0
PRMT8	56341	broad.mit.edu	37	12	3649784	3649784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:3649784C>T	uc001qmf.2	+	2	455	c.88C>T	c.(88-90)CCC>TCC	p.P30S	PRMT8_uc009zed.2_Missense_Mutation_p.P21S|PRMT8_uc009zee.1_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	30	SH3-binding 1.				regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			GAACAGCCCCCCCTCCCAGCC	0.657													31	52					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479545	4479545	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:4479545G>A	uc001qmq.1	-	3	866	c.720C>T	c.(718-720)GGC>GGT	p.G240G		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	240					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			AGCCTTCCGGGCCCGTTCCCC	0.647													25	91					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479941	4479941	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:4479941G>A	uc001qmq.1	-	3	470	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	108					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity	p.F108F(1)		ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TCTCCGGGTCGAAATAGTGCT	0.617													24	73					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4736475	4736476	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:4736475_4736476GG>TA	uc001qnb.3	-	4	1821_1822	c.1592_1593CC>TA	c.(1591-1593)GCC>GTA	p.A531V		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	531					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TCAGAAGCAGGGCAGACACGAT	0.515													12	21					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5860070	5860070	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:5860070G>A	uc001qnm.2	-	11	1182	c.1110C>T	c.(1108-1110)ATC>ATT	p.I370I		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	375	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CAGAAGATGGGATGAGGAATG	0.338													6	29					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6131123	6131123	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:6131123A>G	uc001qnn.1	-	27	3867	c.3617T>C	c.(3616-3618)TTT>TCT	p.F1206S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1206					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCCTGAGGCAAAACGCCGGCC	0.478													28	179					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6427490	6427490	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:6427490G>A	uc001qnr.2	+	11	1327	c.1179G>A	c.(1177-1179)CTG>CTA	p.L393L	PLEKHG6_uc001qns.2_Silent_p.L393L|PLEKHG6_uc010sew.1_Silent_p.L393L|PLEKHG6_uc010sex.1_Silent_p.L361L	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	393					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						TCTCCACCCTGGACCTGACGT	0.652													17	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	6547819	6547819	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:6547819C>T	uc001qoa.2	+	1		c.153C>T				NR_003273				Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1 (SRP14P1), non-coding RNA.																		TTTGAGCCCTCAGACAACAAG	0.458													4	31					0	0	1	0	0
PEX5	5830	broad.mit.edu	37	12	7362672	7362672	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:7362672C>T	uc009zfu.1	+	17	2353	c.1773C>T	c.(1771-1773)GGC>GGT	p.G591G	PEX5_uc001qsw.2_Silent_p.G591G|PEX5_uc010sgc.1_Silent_p.G606G|PEX5_uc001qsu.2_Silent_p.G554G|PEX5_uc010sgd.1_Silent_p.G612G|PEX5_uc001qsv.2_Silent_p.G583G	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	591					protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						AAAGCCGGGGCCCCCGGGGTG	0.567													7	40					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7585083	7585083	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:7585083C>T	uc001qsy.2	-	4	721	c.695G>A	c.(694-696)TGG>TAG	p.W232*	CD163L1_uc010sge.1_Nonsense_Mutation_p.W242*	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	232	SRCR 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCTGCAATTCCAGAGTGCCAA	0.433													10	46					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7632482	7632482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:7632482C>T	uc001qsz.3	-	16	3582	c.3454G>A	c.(3454-3456)GAA>AAA	p.E1152K	CD163_uc001qta.3_3'UTR|CD163_uc009zfw.2_3'UTR	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1152	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTCCCATTTTCCTTTTCAGTG	0.403													21	30					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635262	7635262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:7635262C>T	uc001qsz.3	-	14	3352	c.3224G>A	c.(3223-3225)CGA>CAA	p.R1075Q	CD163_uc001qta.3_Missense_Mutation_p.R1075Q|CD163_uc009zfw.2_Missense_Mutation_p.R1108Q	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1075	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCTCTGTCTTCGCTTTTTAGT	0.433													43	130					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639308	7639308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:7639308C>T	uc001qsz.3	-	10	2373	c.2245G>A	c.(2245-2247)GAC>AAC	p.D749N	CD163_uc001qta.3_Missense_Mutation_p.D749N|CD163_uc009zfw.2_Missense_Mutation_p.D782N	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	749	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCACTCAGGTCCCAGCTGTCA	0.562													30	103					0	0	1	0	0
SLC2A3	6515	broad.mit.edu	37	12	8074185	8074185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:8074185G>A	uc001qtr.2	-	10	1577	c.1315C>T	c.(1315-1317)CTC>TTC	p.L439F		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	439	Helical; Name=12; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		AAGGTAATGAGGAAGCCGGTG	0.448													14	54					0	0	1	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329602	8329602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:8329602C>T	uc001qud.1	+	5	398	c.326C>T	c.(325-327)TCT>TTT	p.S109F		NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	109					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		AAGGAGAACTCTCTCATTCTG	0.373													38	43					0	0	1	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329765	8329765	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:8329765A>G	uc001qud.1	+	5	561	c.489A>G	c.(487-489)AAA>AAG	p.K163K		NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	163					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		AACCACATAAACAAATTCATA	0.378													35	145					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9002352	9002352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:9002352G>A	uc001quz.3	+	17	2214	c.2116G>A	c.(2116-2118)GGT>AGT	p.G706S	A2ML1_uc001qva.1_Missense_Mutation_p.G286S|A2ML1_uc010sgm.1_Missense_Mutation_p.G206S	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	550						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CACTGCTATGGGTGGTAAGCC	0.483													17	63					0	0	1	0	0
PHC1	1911	broad.mit.edu	37	12	9074316	9074316	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:9074316C>A	uc001qvd.2	+	5	582	c.426C>A	c.(424-426)CTC>CTA	p.L142L	PHC1_uc001qvc.1_Silent_p.L105L|PHC1_uc010sgn.1_Silent_p.L142L|PHC1_uc001qve.2_Silent_p.L142L	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	142					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						CCCCACCCCTCAACCAGTCTC	0.577													23	40					2.14196e-07	2.15159e-07	1	1	0
PZP	5858	broad.mit.edu	37	12	9313035	9313035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:9313035G>A	uc001qvl.2	-	24	2953	c.2924C>T	c.(2923-2925)CCA>CTA	p.P975L	PZP_uc009zgl.2_Missense_Mutation_p.P761L|PZP_uc010sgo.1_RNA	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						ACAGCCATATGGCATCTGGAG	0.403													14	71					0	0	1	0	0
CLECL1	160365	broad.mit.edu	37	12	9885592	9885592	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:9885592G>T	uc001qwj.2	-	1	269	c.269C>A	c.(268-270)ACT>AAT	p.T90N		NM_172004	NP_742001	Q8IZS7	CLCL1_HUMAN	type II transmembrane protein DCAL1	90	Extracellular (Potential).					integral to membrane|plasma membrane	sugar binding				0						AGTCCGAACAGTTTTGATGTC	0.428													21	63					1.50039e-11	1.51224e-11	1	1	0
CLEC1A	51267	broad.mit.edu	37	12	10233922	10233922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10233922G>A	uc001qxb.2	-	3	389	c.305C>T	c.(304-306)TCT>TTT	p.S102F	CLEC1A_uc009zhf.2_Missense_Mutation_p.S14F|CLEC1A_uc001qxc.2_Missense_Mutation_p.S14F|CLEC1A_uc001qxd.2_Missense_Mutation_p.S59F|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	102	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						GACTTGAAGAGATTGCAACTC	0.423													22	52					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10462062	10462062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10462062G>A	uc001qxw.3	+	3	280	c.83G>A	c.(82-84)GGA>GAA	p.G28E	KLRD1_uc001qxx.3_Missense_Mutation_p.G28E|KLRD1_uc001qxy.3_Intron|KLRD1_uc009zhh.2_Missense_Mutation_p.G28E|KLRD1_uc009zhi.2_Missense_Mutation_p.G28E|KLRD1_uc001qxz.3_Missense_Mutation_p.G28E	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	28	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						TCTACGTTGGGAATTTTGTTG	0.348													16	57					0	0	1	0	0
KLRK1	22914	broad.mit.edu	37	12	10531209	10531209	+	Missense_Mutation	SNP	C	T	T	rs147568901		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10531209C>T	uc009zhj.2	-	6	537	c.373G>A	c.(373-375)GCT>ACT	p.A125T	uc001qya.1_Intron|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Missense_Mutation_p.A125T|KLRK1_uc009zhk.2_Missense_Mutation_p.A125T|KLRK1_uc001qyd.2_Missense_Mutation_p.A125T	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	125	Extracellular (Potential).|C-type lectin.				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						ATACAAGAAGCCTGGCTCTCA	0.368													26	22					0	0	1	0	0
KLRC2	3822	broad.mit.edu	37	12	10586473	10586473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10586473C>T	uc001qyk.2	-	4	407	c.400G>A	c.(400-402)GAA>AAA	p.E134K	KLRC3_uc001qyh.2_Intron|KLRC2_uc010she.1_Missense_Mutation_p.E134K	NM_002260	NP_002251	P26717	NKG2C_HUMAN	killer cell lectin-like receptor subfamily C,	134	Extracellular (Potential).|C-type lectin.				cellular defense response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						GTTCTTCTTTCCTTACCAATG	0.368													27	39					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978303	10978303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10978303G>A	uc001qyy.1	-	1	566	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	189	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TGTAATTAGGGATAGTGTAAA	0.358													8	47					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978391	10978391	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:10978391T>C	uc001qyy.1	-	1	478	c.478A>G	c.(478-480)ACA>GCA	p.T160A		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	160	Extracellular (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TCCCAGACTGTGTCATTCTTC	0.303													8	35					0	0	1	0	0
TAS2R13	50838	broad.mit.edu	37	12	11061021	11061021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11061021G>A	uc001qzg.1	-	1	1141	c.877C>T	c.(877-879)CTT>TTT	p.L293F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron	NM_023920	NP_076409	Q9NYV9	T2R13_HUMAN	taste receptor, type 2, member 13	293	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			breast(1)|skin(1)	2						GCCACCAAAAGAAAGGCCTGT	0.423													9	42					0	0	1	0	0
TAS2R13	50838	broad.mit.edu	37	12	11061756	11061756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11061756G>A	uc001qzg.1	-	1	406	c.142C>T	c.(142-144)CTC>TTC	p.L48F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron	NM_023920	NP_076409	Q9NYV9	T2R13_HUMAN	taste receptor, type 2, member 13	48	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			breast(1)|skin(1)	2						AAGATAATGAGGAGTTTATCG	0.393													10	32					0	0	1	0	0
TAS2R50	259296	broad.mit.edu	37	12	11139091	11139091	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11139091C>T	uc001qzl.2	-	1	421	c.369G>A	c.(367-369)AGG>AGA	p.R123R	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176890	NP_795371	P59544	T2R50_HUMAN	taste receptor, type 2, member 50	123	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(2)	2						TCCTAACTCTCCTCTTTAAAT	0.398													78	101					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420684	11420684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11420684G>A	uc001qzs.2	-	3	537	c.499C>T	c.(499-501)CCA>TCA	p.P167S	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	167	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.|6.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			CCTCCTTGTGGGGGTGGTCCT	0.652													72	172					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420926	11420926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11420926C>T	uc001qzs.2	-	3	295	c.257G>A	c.(256-258)GGA>GAA	p.G86E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	86	2.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGACTGGTTTCCTCCTTGTGG	0.627													180	210					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461597	11461597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11461597C>T	uc001qzf.1	-	3	354	c.320G>A	c.(319-321)GGA>GAA	p.G107E	PRB4_uc001qzt.2_Missense_Mutation_p.G107E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	149	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|6.		Missing (in allele M and allele S).			extracellular region				ovary(1)	1						GGACTGGTTTCCTCCTTGTGG	0.612										HNSCC(22;0.051)			53	271					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506189	11506189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11506189C>T	uc001qzw.1	-	4	885	c.848G>A	c.(847-849)GGA>GAA	p.G283E	PRB1_uc001qzu.1_Missense_Mutation_p.G150E|PRB1_uc001qzv.1_Missense_Mutation_p.G130E	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	344	15.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGGGGTGGTCCTTGTGGCTT	0.612													41	177					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506223	11506223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11506223G>A	uc001qzw.1	-	4	851	c.814C>T	c.(814-816)CAA>TAA	p.Q272*	PRB1_uc001qzu.1_Nonsense_Mutation_p.Q139*|PRB1_uc001qzv.1_Nonsense_Mutation_p.Q119*	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	333	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|14.					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CGGGCACTTTGGGACTTGCTG	0.592													72	259					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506381	11506381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11506381G>A	uc001qzw.1	-	4	693	c.656C>T	c.(655-657)CCA>CTA	p.P219L	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	280	12.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTCCTTGTGGCTTTCCTGG	0.602													156	83					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506664	11506664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11506664C>T	uc001qzw.1	-	3	410	c.373G>A	c.(373-375)GGA>AGA	p.G125R	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	186	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTGTTGCCTCCTTGTGGGGGT	0.602													55	461					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11545982	11545982	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11545982T>A	uc010shk.1	-	3	1065	c.1030A>T	c.(1030-1032)AAG>TAG	p.K344*		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTTGTGGCTTTCCTGGAGGT	0.602													130	158					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11545988	11545988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11545988G>A	uc010shk.1	-	3	1059	c.1024C>T	c.(1024-1026)CCA>TCA	p.P342S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGCTTTCCTGGAGGTGGGGGA	0.607													127	148					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546405	11546405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11546405C>T	uc010shk.1	-	3	642	c.607G>A	c.(607-609)GGA>AGA	p.G203R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGGGTGGTCCTTGTGGCTTT	0.607													60	191					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546689	11546689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:11546689G>A	uc010shk.1	-	3	358	c.323C>T	c.(322-324)TCC>TTC	p.S108F		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGACTTCGGGACTTGTCTCC	0.602													195	393					0	0	1	0	0
DDX47	51202	broad.mit.edu	37	12	12976239	12976239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:12976239C>T	uc001rav.2	+	10	1334	c.736C>T	c.(736-738)CCC>TCC	p.P246S	DDX47_uc009zhw.1_Missense_Mutation_p.P246S|DDX47_uc001rax.2_Missense_Mutation_p.P246S|DDX47_uc001ray.2_Missense_Mutation_p.P246S	NM_016355	NP_057439	Q9H0S4	DDX47_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	246	Helicase C-terminal.					nucleolus|nucleolus	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding				0		Prostate(47;0.0526)		BRCA - Breast invasive adenocarcinoma(232;0.0354)		TATTTTTATTCCCTCTAAATT	0.358													12	36					0	0	1	0	0
GSG1	83445	broad.mit.edu	37	12	13243455	13243456	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:13243455_13243456CC>TT	uc001rbn.2	-	2	518_519	c.345_346GG>AA	c.(343-348)GAGGAA>GAAAAA	p.E116K	GSG1_uc001rbj.2_Missense_Mutation_p.E103K|GSG1_uc001rbk.2_Missense_Mutation_p.E103K|GSG1_uc001rbl.2_Missense_Mutation_p.E103K|GSG1_uc001rbm.2_Missense_Mutation_p.E103K|GSG1_uc001rbo.2_Missense_Mutation_p.E116K|GSG1_uc001rbp.2_Missense_Mutation_p.E116K|GSG1_uc001rbq.1_Missense_Mutation_p.E116K	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	103						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		TCCACAGTTTCCTCACAGGATA	0.554													8	47					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716761	13716761	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:13716761G>A	uc001rbt.2	-	13	3590	c.3411C>T	c.(3409-3411)TTC>TTT	p.F1137F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1137	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCTTTGTTCGGAACTGGTCCA	0.602													14	52					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13761720	13761720	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:13761720G>A	uc001rbt.2	-	9	2006	c.1827C>T	c.(1825-1827)CTC>CTT	p.L609L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	609	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCAGACCCCAGAGCAACCAAA	0.507													16	71					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13828697	13828697	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:13828697C>T	uc001rbt.2	-	4	1286	c.1107G>A	c.(1105-1107)AAG>AAA	p.K369K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	369	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACTTCCTCTCCTTGTTCAGAA	0.408													18	89					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14781588	14781588	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:14781588C>T	uc001rcd.2	-	20	2378	c.2241G>A	c.(2239-2241)AAG>AAA	p.K747K		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	747	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ACCCAAATATCTTGGCAAGTG	0.333													12	57					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14834368	14834368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:14834368C>T	uc001rcd.2	-	5	792	c.655G>A	c.(655-657)GAA>AAA	p.E219K	GUCY2C_uc009zhz.2_Missense_Mutation_p.E219K	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	219	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AAGCCGAGTTCGTGGGAGAAA	0.413													10	53					0	0	1	0	0
LMO3	55885	broad.mit.edu	37	12	16713427	16713427	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:16713427G>A	uc001rdk.1	-	3	692	c.252C>T	c.(250-252)ATC>ATT	p.I84I	LMO3_uc001rdj.1_Silent_p.I95I|LMO3_uc010shy.1_Silent_p.I102I|LMO3_uc001rdl.1_Silent_p.I84I|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Silent_p.I106I|LMO3_uc001rdm.1_Silent_p.I84I|LMO3_uc001rdo.1_RNA|LMO3_uc001rdp.1_RNA|LMO3_uc001rdn.1_Silent_p.I84I|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	84	LIM zinc-binding 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				CAAAGGCAGGGATGAGCTTAC	0.423													31	24					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18234137	18234137	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18234137C>T	uc001rdq.2	-	6	800	c.606G>A	c.(604-606)AGG>AGA	p.R202R	RERGL_uc001rdr.2_Silent_p.R201R	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	202	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						AAACAGATTTCCTTCTCTTTC	0.333													8	22					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18234177	18234177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18234177G>A	uc001rdq.2	-	6	760	c.566C>T	c.(565-567)TCA>TTA	p.S189L	RERGL_uc001rdr.2_Missense_Mutation_p.S188L	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	189	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						TTTGGCCATTGATTTAGATCC	0.368													15	24					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435502	18435502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18435502G>A	uc001rdt.2	+	2	603	c.487G>A	c.(487-489)GAA>AAA	p.E163K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E163K|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	163					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ATTAGAAAATGAAAATCATAA	0.338													14	54					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18576937	18576937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18576937C>T	uc001rdt.2	+	17	2461	c.2345C>T	c.(2344-2346)TCC>TTC	p.S782F	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S823F|PIK3C2G_uc010sic.1_Missense_Mutation_p.S601F	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	782					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CTCCACCGCTCCTTGCAGAGC	0.428													3	19					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691166	18691166	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18691166C>T	uc001rdt.2	+	24	3393	c.3277C>T	c.(3277-3279)CAA>TAA	p.Q1093*	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Nonsense_Mutation_p.Q1134*|PIK3C2G_uc010sic.1_Nonsense_Mutation_p.Q912*	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1093	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ACAGCATTTTCAAGATTTTGT	0.398													18	60					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18849183	18849183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18849183G>A	uc010sid.1	-	11	1383	c.1192C>T	c.(1192-1194)CAC>TAC	p.H398Y	PLCZ1_uc001rdv.3_Missense_Mutation_p.H294Y|PLCZ1_uc001rdw.3_Missense_Mutation_p.H139Y|PLCZ1_uc001rdu.1_Missense_Mutation_p.H180Y|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	398	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TTCCTGGTGTGAAAAATAAAC	0.269													8	8					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891276	18891277	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18891276_18891277GG>AA	uc001rdy.2	+	1	232_233	c.74_75GG>AA	c.(73-75)GGG>GAA	p.G25E	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	25					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GCCCCTCCAGGGGAATTTGTAA	0.46													12	64					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891712	18891712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:18891712G>A	uc001rdy.2	+	1	668	c.510G>A	c.(508-510)TGG>TGA	p.W170*	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	170					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				ACGGACTTTGGAAATCTAAAT	0.388													21	22					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20874853	20874853	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:20874853G>A	uc001rej.3	+	9	1246	c.891G>A	c.(889-891)AAG>AAA	p.K297K	SLCO1C1_uc010sii.1_Silent_p.K297K|SLCO1C1_uc010sij.1_Silent_p.K248K|SLCO1C1_uc009zip.2_Silent_p.K131K|SLCO1C1_uc001rei.2_Silent_p.K297K|SLCO1C1_uc010sik.1_Silent_p.K179K	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	297	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					ATTTACCAAAGAGTTTACCAA	0.443													6	19					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032466	21032466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:21032466C>T	uc001rek.2	+	10	1358	c.1232C>T	c.(1231-1233)TCA>TTA	p.S411L	SLCO1B3_uc001rel.2_Missense_Mutation_p.S411L|SLCO1B3_uc010sil.1_Missense_Mutation_p.S411L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.S236L	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	411	Helical; Name=9; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GCCAAATTTTCATTTCTTACT	0.358													11	36					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032478	21032478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:21032478C>T	uc001rek.2	+	10	1370	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	SLCO1B3_uc001rel.2_Missense_Mutation_p.S415L|SLCO1B3_uc010sil.1_Missense_Mutation_p.S415L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.S240L	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	415	Helical; Name=9; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTTCTTACTTCGATGATATCC	0.343													12	41					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21445169	21445169	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:21445169G>A	uc001rer.2	-	11	1790	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	SLCO1A2_uc001res.2_Silent_p.F513F|SLCO1A2_uc010siq.1_Silent_p.F381F|SLCO1A2_uc010sio.1_Silent_p.F381F|SLCO1A2_uc010sip.1_Silent_p.F381F|SLCO1A2_uc001ret.2_Silent_p.F511F	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	513	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						ACAAGATTAGGAAGTACTGGA	0.378													3	17					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22001165	22001165	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:22001165G>A	uc001rfi.1	-	23	2805	c.2785C>T	c.(2785-2787)CAA>TAA	p.Q929*	ABCC9_uc001rfh.2_Nonsense_Mutation_p.Q929*|ABCC9_uc001rfj.1_Nonsense_Mutation_p.Q893*	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	929	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AAAGTAGTTTGGTCAGCTTCC	0.418													24	31					0	0	1	0	0
LRMP	4033	broad.mit.edu	37	12	25242563	25242563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:25242563C>T	uc001rgh.2	+	11	1423	c.389C>T	c.(388-390)CCT>CTT	p.P130L	LRMP_uc010sja.1_Missense_Mutation_p.P130L|LRMP_uc010sjb.1_Missense_Mutation_p.P77L|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.P130L|LRMP_uc010sjd.1_Missense_Mutation_p.P77L	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	186	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					GTGGTTTCCCCTCTTCCTGTA	0.318													11	11					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26714877	26714877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:26714877G>A	uc001rhg.2	-	35	5056	c.4639C>T	c.(4639-4641)CGT>TGT	p.R1547C		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1547	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GCAATTCCACGATTTTTTGCT	0.323													4	23					0	0	1	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27799045	27799045	+	Silent	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:27799045A>T	uc001ric.1	+	5	698	c.321A>T	c.(319-321)GCA>GCT	p.A107A	PPFIBP1_uc001rhz.1_Silent_p.A107A|PPFIBP1_uc010sjr.1_5'UTR|PPFIBP1_uc001rib.1_Silent_p.A107A|PPFIBP1_uc001ria.2_Silent_p.A107A|PPFIBP1_uc001rid.1_5'UTR	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	107					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					AAAGGCTGGCACGTTTAGAAA	0.363													6	10					0	0	1	0	0
TMTC1	83857	broad.mit.edu	37	12	29920847	29920847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:29920847G>A	uc001rjb.2	-	2	614	c.140C>T	c.(139-141)CCT>CTT	p.P47L	TMTC1_uc001rjc.1_Missense_Mutation_p.P47L	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	155						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					AGTATGAATAGGATGTACAGC	0.303													14	19					0	0	1	0	0
DENND5B	160518	broad.mit.edu	37	12	31552610	31552610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:31552610C>T	uc001rki.1	-	16	3232	c.3046G>A	c.(3046-3048)GAA>AAA	p.E1016K	DENND5B_uc001rkh.1_Missense_Mutation_p.E1051K|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	1016	PLAT.					integral to membrane				ovary(1)|central_nervous_system(1)	2						CCTGTGATTTCATTTCTGACC	0.403													13	34					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32136356	32136356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32136356G>A	uc001rks.2	+	4	2881	c.2467G>A	c.(2467-2469)GCA>ACA	p.A823T		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	823										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TGGACCAGTAGCAAGTACAGC	0.378													9	39					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32137751	32137751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32137751C>T	uc001rks.2	+	4	4276	c.3862C>T	c.(3862-3864)CCC>TCC	p.P1288S	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1288										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TAAACTAAATCCCTTGCAAAA	0.343													18	16					0	0	1	0	0
BICD1	636	broad.mit.edu	37	12	32491824	32491824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32491824C>T	uc001rku.2	+	8	2756	c.2675C>T	c.(2674-2676)TCA>TTA	p.S892L	BICD1_uc001rkv.2_Intron|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	892					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			TCCACAGAATCATTTCTTCTG	0.493													52	83					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32974395	32974395	+	Silent	SNP	G	A	A	rs138495471		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32974395G>A	uc001rlj.3	-	10	2155	c.2040C>T	c.(2038-2040)TCC>TCT	p.S680S	PKP2_uc001rlk.3_Silent_p.S636S|PKP2_uc010skj.1_Silent_p.S633S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	680	ARM 5.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TTATAACAATGGAATGCCACA	0.507													19	45					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32975518	32975518	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32975518C>T	uc001rlj.3	-	9	1969	c.1854G>A	c.(1852-1854)CTG>CTA	p.L618L	PKP2_uc001rlk.3_Silent_p.L574L|PKP2_uc010skj.1_Silent_p.L574L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	618					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GCTCTGCCTCCAGCTGGTAGG	0.413													20	58					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32996150	32996150	+	Silent	SNP	C	T	T	rs140301552		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:32996150C>T	uc001rlj.3	-	6	1591	c.1476G>A	c.(1474-1476)ACG>ACA	p.T492T	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	492					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ctcctgacctcgtgatccgcc	0.07													13	8					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33592344	33592344	+	Silent	SNP	G	A	A	rs151171356		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:33592344G>A	uc001rll.1	-	1	411	c.114C>T	c.(112-114)TTC>TTT	p.F38F	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	38	Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity	p.F38F(1)		ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TGTCCCGAGGGAAGATGCCCG	0.677													63	75					0	0	1	0	0
ABCD2	225	broad.mit.edu	37	12	40012487	40012487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:40012487C>T	uc001rmb.2	-	1	1357	c.931G>A	c.(931-933)GGA>AGA	p.G311R		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	311	ABC transmembrane type-1.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						ACCTTATGTCCTCTGTAAAAG	0.428													34	39					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40643657	40643657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:40643657G>A	uc001rmg.3	+	8	989	c.868G>A	c.(868-870)GAA>AAA	p.E290K	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	290					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GGTATTAAACGAAGTCCATGA	0.388													11	22					0	0	1	0	0
PPHLN1	51535	broad.mit.edu	37	12	42768706	42768706	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:42768706C>A	uc001rng.1	+	5	446	c.341C>A	c.(340-342)TCC>TAC	p.S114Y	PPHLN1_uc001rmy.2_Missense_Mutation_p.S132Y|PPHLN1_uc001rna.2_Missense_Mutation_p.S66Y|PPHLN1_uc001rne.2_Missense_Mutation_p.S121Y|PPHLN1_uc001rnb.2_Missense_Mutation_p.S121Y|PPHLN1_uc001rnd.2_Missense_Mutation_p.S66Y|PPHLN1_uc001rnc.2_Missense_Mutation_p.S114Y|PPHLN1_uc001rnf.2_Missense_Mutation_p.S114Y|PPHLN1_uc010skq.1_Missense_Mutation_p.S59Y|PPHLN1_uc010skr.1_Missense_Mutation_p.S59Y|PPHLN1_uc010sks.1_Missense_Mutation_p.S59Y|PPHLN1_uc010skt.1_Missense_Mutation_p.S13Y|PPHLN1_uc001rni.1_Missense_Mutation_p.S59Y|PPHLN1_uc001rnh.1_RNA|PPHLN1_uc010sku.1_Missense_Mutation_p.S66Y	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	114					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		TTCTACTCTTCCCATTATGCG	0.368													22	25					8.04996e-18	8.1365e-18	1	1	0
TMEM117	84216	broad.mit.edu	37	12	44605131	44605131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:44605131C>T	uc001rod.2	+	5	635	c.569C>T	c.(568-570)GCT>GTT	p.A190V	TMEM117_uc001roe.2_Missense_Mutation_p.A86V|TMEM117_uc009zkc.2_Missense_Mutation_p.A190V	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	190						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		TCAGCAAGAGCTTTCTGGAAG	0.388													8	37					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458880	45458880	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:45458880C>T	uc001rol.2	-	1		c.315G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CTCAGCTCTCCGTTTGGATGT	0.458													12	13					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46601390	46601390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:46601390C>T	uc001rpa.2	-	7	661	c.403G>A	c.(403-405)GAA>AAA	p.E135K	SLC38A1_uc001rpb.2_Missense_Mutation_p.E135K|SLC38A1_uc001rpc.2_Missense_Mutation_p.E135K|SLC38A1_uc001rpd.2_Missense_Mutation_p.E135K|SLC38A1_uc001rpe.2_Missense_Mutation_p.E135K|SLC38A1_uc010slh.1_Missense_Mutation_p.E108K|SLC38A1_uc009zkj.1_Missense_Mutation_p.E135K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	135	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CCCAGCTTTTCATACACCATG	0.383													24	82					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47472445	47472445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:47472445G>A	uc001rpm.2	-	3	996	c.341C>T	c.(340-342)TCC>TTC	p.S114F	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.S114F|AMIGO2_uc001rpl.2_Missense_Mutation_p.S114F	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	114	Extracellular (Potential).|LRR 2.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TGGAGTTGTGGAAAAACTGCC	0.433													23	69					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629473	47629473	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:47629473C>T	uc001rpn.2	+	4	1358	c.627C>T	c.(625-627)TTC>TTT	p.F209F	FAM113B_uc010slj.1_Silent_p.F89F|FAM113B_uc001rpq.2_Silent_p.F209F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	209							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AACATAACTTCGATGTACTGG	0.587													4	21					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48371159	48371159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:48371159G>A	uc001rqu.2	-	46	3398	c.3217C>T	c.(3217-3219)CCT>TCT	p.P1073S	COL2A1_uc001rqt.2_5'Flank|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P1004S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1073	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGGGAGCCAGGGGGCCCAGGG	0.597													26	66					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48372429	48372429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:48372429G>A	uc001rqu.2	-	42	3027	c.2846C>T	c.(2845-2847)CCT>CTT	p.P949L	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P880L	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	949	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGGTCCAGCAGGACCTTGGAG	0.662													12	43					0	0	1	0	0
PFKM	5213	broad.mit.edu	37	12	48501970	48501970	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:48501970C>T	uc001rrb.1	+	3	422	c.198C>T	c.(196-198)TTC>TTT	p.F66F	SENP1_uc001rqw.2_5'Flank|SENP1_uc001rqx.2_5'Flank|SENP1_uc001rqy.2_5'Flank|SENP1_uc001rqz.2_5'Flank|SENP1_uc009zkx.2_5'Flank|PFKM_uc001rra.1_5'UTR	NM_000289	NP_000280	P08237	K6PF_HUMAN	phosphofructokinase, muscle	Error:Variant_position_missing_in_P08237_after_alignment					fructose 6-phosphate metabolic process|glycolysis|muscle cell homeostasis	6-phosphofructokinase complex|apical plasma membrane	6-phosphofructokinase activity|ATP binding|identical protein binding|kinase binding|metal ion binding|protein C-terminus binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4						TACCTGTTTTCAAAACTGGTG	0.423													27	93					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48919680	48919680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:48919680G>A	uc010slu.1	+	1	266	c.266G>A	c.(265-267)AGG>AAG	p.R89K		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTGTCACAGAGGAAAACCATT	0.502													19	58					0	0	1	0	0
RND1	27289	broad.mit.edu	37	12	49254910	49254910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49254910C>T	uc001rsn.2	-	4	426	c.323G>A	c.(322-324)AGG>AAG	p.R108K		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	108					actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						GATTTCTGTCCTCCACTGAGG	0.537													18	63					0	0	1	0	0
WNT10B	7480	broad.mit.edu	37	12	49361857	49361857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49361857C>T	uc001rss.2	-	4	929	c.583G>A	c.(583-585)GAA>AAA	p.E195K	WNT10B_uc001rst.2_Intron	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	195					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						CCACCCCATTCCCATGTGTCC	0.468													10	42					0	0	1	0	0
WNT10B	7480	broad.mit.edu	37	12	49361921	49361921	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49361921G>A	uc001rss.2	-	4	865	c.519C>T	c.(517-519)TTC>TTT	p.F173F	WNT10B_uc001rst.2_Intron	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	173					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						GAGAGTGGGGGAAACTCTTGC	0.488													14	22					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49427207	49427207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49427207G>A	uc001rta.3	-	39	11281	c.11281C>T	c.(11281-11283)CCT>TCT	p.P3761S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3761	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TGTACTCCAGGACCCTGCTGC	0.498			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			3	9					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49433938	49433938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49433938G>A	uc001rta.3	-	31	7615	c.7615C>T	c.(7615-7617)CCT>TCT	p.P2539S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2539	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ACTGCCTGAGGGAAAGTGAAA	0.637			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			8	31					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49435259	49435259	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49435259G>A	uc001rta.3	-	31	6294	c.6294C>T	c.(6292-6294)GAC>GAT	p.D2098D		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2098					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGCCGGTCGGTCAGTCTTAC	0.652			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			23	60					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49442531	49442532	+	Missense_Mutation	DNP	GA	TC	TC			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49442531_49442532GA>TC	uc001rta.3	-	13	4041_4042	c.4041_4042TC>GA	c.(4039-4044)TCTCCC>TCGACC	p.P1348T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1348					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCCTTACTGGGAGAGCTATCAA	0.475			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			44	120					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49444278	49444278	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49444278G>A	uc001rta.3	-	11	3093	c.3093C>T	c.(3091-3093)TCC>TCT	p.S1031S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1031	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGGAACCAGGGAATGCTGAA	0.612			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			12	68					0	0	1	0	0
LMBR1L	55716	broad.mit.edu	37	12	49495066	49495066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49495066G>A	uc001rth.3	-	13	1391	c.1049C>T	c.(1048-1050)TCC>TTC	p.S350F	LMBR1L_uc001rtg.3_Missense_Mutation_p.S345F|LMBR1L_uc001rti.3_Intron	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	350	Extracellular (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						GGCACCAAAGGAGCCCAGCTT	0.552													24	44					0	0	1	0	0
TUBA1A	7846	broad.mit.edu	37	12	49579071	49579071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49579071G>A	uc009zlf.2	-	4	1350	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	TUBA1B_uc001rto.2_Intron|TUBA1A_uc001rtp.2_Missense_Mutation_p.P360S|TUBA1A_uc001rtq.2_Missense_Mutation_p.P207S|TUBA1A_uc001rtr.2_Missense_Mutation_p.P207S|TUBA1A_uc009zlg.2_Missense_Mutation_p.P207S	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	360					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						ACCACAGTGGGAGGCTGGTAG	0.572													13	31					0	0	1	0	0
SPATS2	65244	broad.mit.edu	37	12	49888605	49888605	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:49888605C>T	uc001rud.2	+	7	1335	c.346C>T	c.(346-348)CAA>TAA	p.Q116*	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Nonsense_Mutation_p.Q116*|SPATS2_uc001ruf.2_Nonsense_Mutation_p.Q116*|SPATS2_uc001rug.2_Nonsense_Mutation_p.Q116*	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	116						cytoplasm				breast(1)	1						AGTTTCCATTCAAGAGGAACA	0.423													15	14					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50187175	50187175	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50187175C>T	uc009zlk.2	-	10	3502	c.3300G>A	c.(3298-3300)GAG>GAA	p.E1100E	NCKAP5L_uc001rvc.3_Silent_p.E304E|NCKAP5L_uc001rvb.2_Silent_p.E693E	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1096	Pro-rich.									central_nervous_system(1)	1						CCAGGCTGTCCTCCGAGGGCA	0.662													26	61					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344626	50344626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50344626C>T	uc001rvn.2	+	1	103	c.13C>T	c.(13-15)CGC>TGC	p.R5C		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	5	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GTGGGAGCTCCGCTCCATAGC	0.632													35	39					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344628	50344628	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50344628C>T	uc001rvn.2	+	1	105	c.15C>T	c.(13-15)CGC>CGT	p.R5R		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	5	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GGGAGCTCCGCTCCATAGCCT	0.637													35	42					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344844	50344844	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50344844G>A	uc001rvn.2	+	1	321	c.231G>A	c.(229-231)GTG>GTA	p.V77V		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	77	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						CCTGCCTGGTGGGCTGCCACG	0.657													22	22					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50349313	50349313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50349313G>A	uc001rvn.2	+	4	828	c.738G>A	c.(736-738)TGG>TGA	p.W246*	AQP2_uc009zll.1_5'Flank	NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	246	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						ACACCGATTGGGAGGAGCGCG	0.692													15	9					0	0	1	0	0
ACCN2	41	broad.mit.edu	37	12	50453675	50453675	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:50453675C>T	uc001rvw.2	+	3	725	c.496C>T	c.(496-498)CGA>TGA	p.R166*	ACCN2_uc001rvv.2_Nonsense_Mutation_p.R166*|ACCN2_uc009zln.2_5'UTR|ACCN2_uc009zlo.2_Nonsense_Mutation_p.R166*	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	166	Extracellular (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	GCACGACATTCGAGACATGCT	0.582													30	33					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51754519	51754519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:51754519C>T	uc001ryk.2	-	6	1378	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	GALNT6_uc009zma.1_Intron|GALNT6_uc001ryl.1_Missense_Mutation_p.E385K|GALNT6_uc001ryj.1_5'Flank	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	385	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						AAGGACATTTCCACGTTCTCC	0.547													24	24					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52699848	52699848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:52699848C>T	uc010snq.1	+	8	1164	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	KRT86_uc009zmg.2_Missense_Mutation_p.S344F|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.S344F	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	344	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTTCAGAATTCCAAGCTGGAG	0.597											OREG0021845	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	11					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52961997	52961997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:52961997C>T	uc001sap.1	-	7	1359	c.1311G>A	c.(1309-1311)ATG>ATA	p.M437I		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	437	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGGCAATCTCCATGTCCAGGG	0.642													12	31					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52963710	52963710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:52963710C>T	uc001sap.1	-	6	1115	c.1067G>A	c.(1066-1068)AGC>AAC	p.S356N		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	356	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		CACCATCTCGCTCCTGGTGTG	0.577													24	4					0	0	1	0	0
KRT77	374454	broad.mit.edu	37	12	53097124	53097124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:53097124G>A	uc001saw.2	-	1	124	c.95C>T	c.(94-96)CCG>CTG	p.P32L	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	32	Head.					keratin filament	structural molecule activity			ovary(1)	1						ACCCACTGCCGGACTCCCACC	0.537													30	2					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53165938	53165938	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:53165938G>A	uc001sax.2	-	5	1131	c.1077C>T	c.(1075-1077)GCC>GCT	p.A359A		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	359	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						CCTCATACTGGGCGCGGACCT	0.582													24	2					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53217761	53217761	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:53217761C>T	uc001sbb.2	-	6	1089	c.1056G>A	c.(1054-1056)GGG>GGA	p.G352G	KRT79_uc001sba.2_Silent_p.G123G	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	352	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						GCAGGTTGTCCCCATGCTTCC	0.607													7	13					0	0	1	0	0
CSAD	51380	broad.mit.edu	37	12	53566324	53566324	+	Missense_Mutation	SNP	G	A	A	rs149962027		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:53566324G>A	uc001sby.2	-	4	361	c.235C>T	c.(235-237)CGC>TGC	p.R79C	CSAD_uc001sbw.2_Intron|CSAD_uc009zmt.2_5'UTR|CSAD_uc010snx.1_Missense_Mutation_p.R106C|CSAD_uc001sbz.2_Missense_Mutation_p.R79C|CSAD_uc009zmu.2_Intron|CSAD_uc001sca.3_RNA|CSAD_uc010sny.1_Missense_Mutation_p.R79C	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	79					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	ACACTGTAGCGAATCACAGCC	0.592									Hereditary_Prostate_Cancer				10	24					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53686161	53686161	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:53686161C>T	uc001sck.2	+	28	5987	c.5896C>T	c.(5896-5898)CGA>TGA	p.R1966*	ESPL1_uc001scj.2_Nonsense_Mutation_p.R1641*	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1966					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GGAGCAATTTCGAGCCAATTT	0.527													24	89					0	0	1	0	0
NFE2	4778	broad.mit.edu	37	12	54686623	54686623	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54686623C>T	uc009znk.2	-	2	1167	c.657G>A	c.(655-657)CGG>CGA	p.R219R	NFE2_uc001sfq.2_Silent_p.R219R|NFE2_uc001sfr.3_Silent_p.R219R|NFE2_uc009znl.2_Silent_p.R219R	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	219					blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						CTGCCTCCCCCCGTGCAGTGG	0.582													8	33					0	0	1	0	0
NFE2	4778	broad.mit.edu	37	12	54687108	54687108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54687108C>T	uc009znk.2	-	2	682	c.172G>A	c.(172-174)GGA>AGA	p.G58R	NFE2_uc001sfq.2_Missense_Mutation_p.G58R|NFE2_uc001sfr.3_Missense_Mutation_p.G58R|NFE2_uc009znl.2_Missense_Mutation_p.G58R	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	58	Transactivation domain.|Required for interaction with MAPK8 (By similarity).				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GGTGGAGGTCCAAGGTATGGA	0.532													50	51					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54801929	54801929	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54801929C>G	uc001sga.2	-	7	850	c.782G>C	c.(781-783)CGC>CCC	p.R261P	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	261	Extracellular (Potential).|FG-GAP 4.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						ACTGGCCTGGCGAGTCTGCAG	0.562													31	47					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54903523	54903523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54903523G>A	uc001sgc.3	+	6	656	c.577G>A	c.(577-579)GAG>AAG	p.E193K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E143K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	193					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GCTGACAGAAGAGTTTGGGCC	0.478													86	99					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925532	54925532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54925532G>A	uc001sgc.3	+	25	2783	c.2704G>A	c.(2704-2706)GAA>AAA	p.E902K	NCKAP1L_uc010sox.1_Missense_Mutation_p.E444K|NCKAP1L_uc010soy.1_Missense_Mutation_p.E852K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	902					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CTCAGGGGCTGAAAATGTGCT	0.502													27	32					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54963330	54963330	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:54963330G>A	uc001sgd.1	+	5	577	c.411G>A	c.(409-411)CGG>CGA	p.R137R	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_Silent_p.R96R|PDE1B_uc001sgf.2_5'UTR|PDE1B_uc001sge.2_Silent_p.R117R|PDE1B_uc009znq.2_Intron	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	137					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TCTCTCTCAGGATGTTCCGGA	0.517													32	24					0	0	1	0	0
MUCL1	118430	broad.mit.edu	37	12	55251988	55251988	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55251988T>G	uc001sgk.2	+	4	303	c.235T>G	c.(235-237)TGG>GGG	p.W79G		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	79						extracellular region|membrane					0						TTTACCCAAATGGGTTGGGGA	0.413													49	71					0	0	1	0	0
KIAA0748	9840	broad.mit.edu	37	12	55361016	55361016	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55361016G>A	uc001sgn.3	-	5	371	c.261C>T	c.(259-261)TTC>TTT	p.F87F	KIAA0748_uc001sgl.3_5'UTR|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_5'UTR|KIAA0748_uc010spd.1_Silent_p.F87F|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	87										ovary(1)|central_nervous_system(1)	2						CATGGCTGCAGAAGCCTGTCC	0.498													9	13					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55614901	55614901	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55614901C>T	uc010spf.1	+	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TTATTTTTTTCCTGGCCATTT	0.378													78	101					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55615672	55615672	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55615672C>T	uc010spf.1	+	1	864	c.864C>T	c.(862-864)ATC>ATT	p.I288I		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TAAACCCCATCATCTACGGCC	0.458													25	32					0	0	1	0	0
OR6C3	254786	broad.mit.edu	37	12	55726246	55726246	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55726246C>T	uc010spj.1	+	1	762	c.762C>T	c.(760-762)TTC>TTT	p.F254F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGTATATTCATGTATGCTA	0.388													9	43					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846078	55846078	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55846078C>T	uc001sgz.1	+	1	81	c.81C>T	c.(79-81)ATC>ATT	p.I27I		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGCTTTTTATCTTTCTATTTC	0.408													14	53					0	0	1	0	0
OR6C70	390327	broad.mit.edu	37	12	55863874	55863875	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:55863874_55863875CC>TT	uc010spn.1	-	1	48_49	c.48_49GG>AA	c.(46-51)ACGGAT>ACAAAT	p.D17N		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGAGAATTATCCGTCAGTCCCA	0.351													7	47					0	0	1	0	0
METTL7B	196410	broad.mit.edu	37	12	56075839	56075839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:56075839C>T	uc010spr.1	+	1	510	c.301C>T	c.(301-303)CCC>TCC	p.P101S		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	101							methyltransferase activity				0						AGACCCAAATCCCCACTTTGA	0.582													14	47					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56086984	56086984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:56086984C>T	uc001shh.2	-	20	2885	c.2665G>A	c.(2665-2667)GGC>AGC	p.G889S	ITGA7_uc001shg.2_Missense_Mutation_p.G885S|ITGA7_uc010sps.1_Missense_Mutation_p.G792S|ITGA7_uc009znw.2_Missense_Mutation_p.G132S|ITGA7_uc009znx.2_Missense_Mutation_p.G766S	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	929	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CCCTGCCCGCCCTCCAGCTCA	0.602													19	64					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56089326	56089326	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:56089326C>T	uc001shh.2	-	14	2215	c.1995G>A	c.(1993-1995)ACG>ACA	p.T665T	ITGA7_uc001shg.2_Silent_p.T661T|ITGA7_uc010sps.1_Silent_p.T568T|ITGA7_uc009znw.2_5'UTR|ITGA7_uc009znx.2_Silent_p.T542T	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	705	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GTTGGAATTCCGTGTCGCTGA	0.597													22	52					0	0	1	0	0
ERBB3	2065	broad.mit.edu	37	12	56488261	56488261	+	Silent	SNP	C	T	T	rs56073151		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:56488261C>T	uc001sjh.2	+	15	1973	c.1780C>T	c.(1780-1782)CTA>TTA	p.L594L	ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Silent_p.L535L|ERBB3_uc009zok.2_Silent_p.L36L|ERBB3_uc001sjk.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	594	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CCATGGAGTCCTAGGTGCCAA	0.542													56	81					0	0	1	0	0
GLS2	27165	broad.mit.edu	37	12	56868878	56868878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:56868878C>T	uc001slj.2	-	10	1225	c.946G>A	c.(946-948)GAA>AAA	p.E316K	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Missense_Mutation_p.E51K|GLS2_uc009zot.2_Intron	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	316					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCCCCTGTTTCCTTCTCTGAC	0.468													78	107					0	0	1	0	0
PRIM1	5557	broad.mit.edu	37	12	57146080	57146080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57146080C>T	uc001smd.2	-	1	67	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PRIM1_uc001sme.1_RNA|PRIM1_uc009zoz.1_RNA|PRIM1_uc001smf.2_Missense_Mutation_p.M1I	NM_000946	NP_000937	P49642	PRI1_HUMAN	DNA primase polypeptide 1	1					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	DNA primase activity|metal ion binding				0						CAAACGTCTCCATTGAGCGCG	0.602													4	10					0	0	1	0	0
RDH16	8608	broad.mit.edu	37	12	57348785	57348785	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57348785C>A	uc001smi.3	-	2	649	c.477G>T	c.(475-477)GTG>GTT	p.V159V	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	159	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						AGACGTTGACCACACGGCCCC	0.567													13	53					9.31168e-06	9.33782e-06	1	1	0
ZBTB39	9880	broad.mit.edu	37	12	57397399	57397399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57397399G>A	uc001sml.1	-	2	1389	c.1303C>T	c.(1303-1305)CCC>TCC	p.P435S	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	435					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						CCTGGCAGGGGATCGTTGGGG	0.532													24	42					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57437088	57437088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57437088G>A	uc001smw.3	-	11	1190	c.947C>T	c.(946-948)GCT>GTT	p.A316V	MYO1A_uc010sqz.1_Missense_Mutation_p.A154V|MYO1A_uc009zpd.2_Missense_Mutation_p.A316V	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	316	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CGAGCACAAAGCTCTCTCTAC	0.502													16	53					0	0	1	0	0
STAT6	6778	broad.mit.edu	37	12	57500318	57500318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57500318G>A	uc009zpe.2	-	6	775	c.524C>T	c.(523-525)CCA>CTA	p.P175L	STAT6_uc009zpf.2_Missense_Mutation_p.P175L|STAT6_uc001sna.2_Missense_Mutation_p.P175L|STAT6_uc010srb.1_Missense_Mutation_p.P65L|STAT6_uc010src.1_Missense_Mutation_p.P65L|STAT6_uc010srd.1_Missense_Mutation_p.P65L|STAT6_uc009zpg.2_Missense_Mutation_p.P224L	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	175					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						CACCTCACTTGGCCCAGTCCC	0.522													13	51					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57578924	57578924	+	Silent	SNP	C	T	T	rs141806742		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57578924C>T	uc001snd.2	+	40	6865	c.6399C>T	c.(6397-6399)CCC>CCT	p.P2133P		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2133	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ACTCCGTGCCCCTGCGAACCG	0.607													11	84					0	0	1	0	0
MIR1228	100302201	broad.mit.edu	37	12	57588351	57588351	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57588351G>A	hsa-mir-1228|MI0006318	+			c.65G>A			LRP1_uc001snd.2_Intron																	0						CACCTGCCTCGCCCCCCAGGT	0.647													27	47					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57602525	57602525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57602525C>T	uc001snd.2	+	78	12536	c.12070C>T	c.(12070-12072)CCC>TCC	p.P4024S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4024	LDL-receptor class B 33.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGGCAACCACCCCAAGATTGA	0.647													12	53					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57843538	57843538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57843538G>A	uc001snv.1	+	2	919	c.792G>A	c.(790-792)TGG>TGA	p.W264*		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	264					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GGCACGACTGGATCATCCAGC	0.552													12	35					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57865753	57865753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57865753C>T	uc001snx.2	+	12	3308	c.3230C>T	c.(3229-3231)CCC>CTC	p.P1077L	GLI1_uc009zpq.2_Missense_Mutation_p.P949L	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1077					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			ACCCCACCTCCCTCTGGGCCC	0.562													19	121					0	0	1	0	0
MARS	4141	broad.mit.edu	37	12	57884323	57884324	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57884323_57884324GG>AA	uc001sog.2	+	7	689_690	c.666_667GG>AA	c.(664-669)GAGGAG>GAAAAG	p.E223K	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Missense_Mutation_p.E96K|MARS_uc010srq.1_5'UTR	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	223					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	CTTTATAGGAGGAGGAGCTGGC	0.535													23	107					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57972039	57972039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:57972039G>A	uc001sor.1	+	23	2660	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	KIF5A_uc010srr.1_Missense_Mutation_p.E729K	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	818					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						AATGGAGCCCGAAGACAGTGG	0.512													32	113					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58018757	58018758	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:58018757_58018758GG>AA	uc001spe.2	+	10	1647_1648	c.1336_1337GG>AA	c.(1336-1338)GGA>AAA	p.G446K	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	446	STAS.					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					GCTCGGAGAAGGAGAAAAGGTG	0.594													59	68					0	0	1	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58022621	58022621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:58022621G>A	uc001spg.1	-	8	1309	c.877C>T	c.(877-879)CGG>TGG	p.R293W	B4GALNT1_uc010sru.1_Missense_Mutation_p.R238W|B4GALNT1_uc010srv.1_Missense_Mutation_p.R260W	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	293	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			ATGAGAGCCCGTAGCCGATCA	0.582													30	34					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58135802	58135802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:58135802C>T	uc001spr.2	-	1	139	c.53G>A	c.(52-54)CGA>CAA	p.R18Q	TSPAN31_uc001spt.2_5'Flank|TSPAN31_uc009zqb.2_5'Flank	NM_014770	NP_055585	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-S	Error:Variant_position_missing_in_Q99490_after_alignment					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						CACCTCATGTCGTCTGACTTC	0.592													45	66					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58135834	58135834	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:58135834G>A	uc001spr.2	-	1	107	c.21C>T	c.(19-21)TTC>TTT	p.F7F	TSPAN31_uc001spt.2_5'Flank|TSPAN31_uc009zqb.2_5'Flank	NM_014770	NP_055585	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-S	Error:Variant_position_missing_in_Q99490_after_alignment					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						CAGCTACAACGAACTGCCTCT	0.597													28	79					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	63359496	63359496	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:63359496A>G	uc001srn.1	+	1	397	c.392A>G	c.(391-393)CAA>CGA	p.Q131R						SubName: Full=Putative uncharacterized protein RPL14P1;																		AAGAAGCTTCAAAAGGCAGCT	0.318													7	22					0	0	1	0	0
WIF1	11197	broad.mit.edu	37	12	65471549	65471549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:65471549C>T	uc001ssk.2	-	3	519	c.374G>A	c.(373-375)GGA>GAA	p.G125E		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	125	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		AGGCACTGTTCCCAGCAGAGG	0.443			T	HMGA2	pleomorphic salivary gland adenoma								13	41					0	0	1	0	0
RPSAP52	204010	broad.mit.edu	37	12	66152025	66152025	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:66152025C>T	uc001sso.2	-	2	919	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q		NR_026825				SubName: Full=Putative uncharacterized protein RPSAP52;												0						CAGAGGGCACCTGCATGCCTT	0.522													6	13					0	0	1	0	0
GRIP1	23426	broad.mit.edu	37	12	66747280	66747280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:66747280C>T	uc001stk.2	-	23	3161	c.2920G>A	c.(2920-2922)GAG>AAG	p.E974K	GRIP1_uc001stj.2_Missense_Mutation_p.E741K	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	1026	PDZ 7.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACTCCTTTCTCCAGTAAGCCA	0.478													38	159					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67688816	67688816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:67688816C>T	uc001stn.2	+	4	808	c.371C>T	c.(370-372)TCT>TTT	p.S124F		NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	124					cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		CATGCAGGCTCTGCATTAGCT	0.363													21	32					0	0	1	0	0
FRS2	10818	broad.mit.edu	37	12	69967820	69967820	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:69967820A>G	uc001suy.2	+	10	1122	c.612A>G	c.(610-612)GAA>GAG	p.E204E	FRS2_uc001suz.2_Silent_p.E204E|FRS2_uc009zrj.2_Silent_p.E204E|FRS2_uc009zrk.2_Silent_p.E204E	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	204					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GTGTGCAAGAAGAGCGGAAAA	0.393													27	43					0	0	1	0	0
RAB3IP	117177	broad.mit.edu	37	12	70149251	70149251	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70149251C>T	uc001svp.2	+	2	558	c.111C>T	c.(109-111)GAC>GAT	p.D37D	RAB3IP_uc001svl.1_Silent_p.D21D|RAB3IP_uc001svm.2_Silent_p.D21D|RAB3IP_uc001svn.2_Silent_p.D21D|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Silent_p.D37D|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	37					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			CTTCTCCGGACCTTCTTGGTG	0.453													29	63					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70918266	70918266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70918266G>A	uc001swb.3	-	31	5986	c.5956C>T	c.(5956-5958)CCA>TCA	p.P1986S	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.P1896S|PTPRB_uc010stp.1_Missense_Mutation_p.P1896S|PTPRB_uc001swc.3_Missense_Mutation_p.P2204S|PTPRB_uc001swa.3_Missense_Mutation_p.P2116S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1986	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGATACTCTGGATTCACATTT	0.353													10	12					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70931970	70931970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70931970G>A	uc001swb.3	-	26	5287	c.5257C>T	c.(5257-5259)CCT>TCT	p.P1753S	uc001svz.2_RNA|PTPRB_uc010sto.1_Missense_Mutation_p.P1663S|PTPRB_uc010stp.1_Missense_Mutation_p.P1663S|PTPRB_uc001swc.3_Missense_Mutation_p.P1971S|PTPRB_uc001swa.3_Missense_Mutation_p.P1883S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1753	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCAGAGCAAGGATCATCATCT	0.453													39	58					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70933794	70933794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70933794C>T	uc001swb.3	-	22	4979	c.4949G>A	c.(4948-4950)CGA>CAA	p.R1650Q	PTPRB_uc010sto.1_Missense_Mutation_p.R1560Q|PTPRB_uc010stp.1_Missense_Mutation_p.R1560Q|PTPRB_uc001swc.3_Missense_Mutation_p.R1868Q|PTPRB_uc001swa.3_Missense_Mutation_p.R1780Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1650	Cytoplasmic (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGGTCTTTCTCGACCATGGCT	0.433													14	24					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70949819	70949819	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70949819C>T	uc001swb.3	-	17	4200	c.4170G>A	c.(4168-4170)CGG>CGA	p.R1390R	PTPRB_uc010sto.1_Silent_p.R1300R|PTPRB_uc010stp.1_Silent_p.R1300R|PTPRB_uc001swc.3_Silent_p.R1608R|PTPRB_uc001swa.3_Silent_p.R1520R	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1390	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGTCCATTTTCCGGCATTCAA	0.458													10	38					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70956757	70956757	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:70956757C>T	uc001swb.3	-	14	3411	c.3381G>A	c.(3379-3381)CAG>CAA	p.Q1127Q	PTPRB_uc010sto.1_Silent_p.Q1037Q|PTPRB_uc010stp.1_Silent_p.Q1037Q|PTPRB_uc001swc.3_Silent_p.Q1345Q|PTPRB_uc001swa.3_Silent_p.Q1257Q|PTPRB_uc001swd.3_Silent_p.Q1344Q|PTPRB_uc009zrr.1_Silent_p.Q1224Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1127	Fibronectin type-III 13.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GAGCTCTCTCCTGGAGATTCC	0.522													13	54					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71029486	71029486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:71029486C>T	uc001swc.3	-	2	460	c.416G>A	c.(415-417)GGA>GAA	p.G139E	PTPRB_uc001swa.3_Missense_Mutation_p.G139E|PTPRB_uc001swd.3_Missense_Mutation_p.G138E|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Missense_Mutation_p.G139E	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GACCAGTTTTCCCTCCTTGTT	0.408													24	38					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71286745	71286745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:71286745C>T	uc001swi.1	-	2	487	c.71G>A	c.(70-72)GGA>GAA	p.G24E		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	24	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		ATCATTGTTTCCTGAAAAGCA	0.383													29	42					0	0	1	0	0
LGR5	8549	broad.mit.edu	37	12	71977857	71977857	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:71977857C>T	uc001swl.2	+	18	2115	c.2067C>T	c.(2065-2067)GCC>GCT	p.A689A	LGR5_uc001swm.2_Silent_p.A665A|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	689	Helical; Name=4; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGCTCTGTGCCCTGCTGGCCT	0.547													259	277					0	0	1	0	0
TPH2	121278	broad.mit.edu	37	12	72366380	72366380	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:72366380C>T	uc009zrw.1	+	6	831	c.690C>T	c.(688-690)CTC>CTT	p.L230L	TPH2_uc001swy.2_Silent_p.L140L	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	230					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	TCTCCAAACTCTATCCCACTC	0.468													63	326					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72680510	72680510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:72680510C>T	uc001sxa.2	+	2	859	c.829C>T	c.(829-831)CCT>TCT	p.P277S		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	277	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AAAGGCATTTCCTTGTTTTGA	0.363													22	77					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72969126	72969126	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:72969126G>A	uc001sxa.2	+	11	2118	c.2088G>A	c.(2086-2088)AGG>AGA	p.R696R		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	696	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATGACCTAAGGAACTGGAGAT	0.363													34	29					0	0	1	0	0
GLIPR1L1	256710	broad.mit.edu	37	12	75737648	75737648	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:75737648G>A	uc001sxo.2	+	2	396	c.350G>A	c.(349-351)TGG>TAG	p.W117*	CAPS2_uc001sxm.3_Intron|CAPS2_uc009zsa.2_Intron|GLIPR1L1_uc001sxn.2_Nonsense_Mutation_p.W117*	NM_152779	NP_689992	Q6UWM5	GPRL1_HUMAN	GLI pathogenesis-related 1 like 1	117						extracellular region					0						ATTACGGCTTGGTATAATGAA	0.333													19	30					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78452854	78452854	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:78452854C>T	uc001syp.2	+	12	2768	c.2595C>T	c.(2593-2595)ATC>ATT	p.I865I	NAV3_uc001syo.2_Silent_p.I865I|NAV3_uc010sub.1_Silent_p.I365I	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	865						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CCCGGGACATCATCCAGAGAG	0.398										HNSCC(70;0.22)			10	32					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79685898	79685898	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:79685898C>T	uc001sys.2	+	7	1133	c.462C>T	c.(460-462)TTC>TTT	p.F154F	SYT1_uc001syt.2_Silent_p.F154F|SYT1_uc001syu.2_Silent_p.F151F|SYT1_uc001syv.2_Silent_p.F154F	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	154	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						ATTATGATTTCCAAAATAACC	0.343													22	23					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79689863	79689863	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:79689863C>T	uc001sys.2	+	8	1160	c.489C>T	c.(487-489)ATC>ATT	p.I163I	SYT1_uc001syt.2_Silent_p.I163I|SYT1_uc001syu.2_Silent_p.I160I|SYT1_uc001syv.2_Silent_p.I163I	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	163	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TGGTAGGGATCATTCAGGCTG	0.428													16	52					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79842834	79842834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:79842834G>A	uc001sys.2	+	12	1870	c.1199G>A	c.(1198-1200)CGA>CAA	p.R400Q	SYT1_uc001syt.2_Missense_Mutation_p.R400Q|SYT1_uc001syu.2_Missense_Mutation_p.R397Q|SYT1_uc001syv.2_Missense_Mutation_p.R400Q	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	400	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AACCCCAGGCGACCTATTGCC	0.557													29	23					0	0	1	0	0
MYF6	4618	broad.mit.edu	37	12	81102314	81102314	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:81102314G>A	uc001szf.1	+	2	584	c.531G>A	c.(529-531)GCG>GCA	p.A177A		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	177					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TTGAGGGTGCGGATTTCCTGC	0.582													27	88					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81110906	81110906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:81110906C>T	uc001szg.2	+	1	199	c.64C>T	c.(64-66)CCG>TCG	p.P22S		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	22					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CTCCTGCATACCGTCCCCCGA	0.617													13	36					0	0	1	0	0
C12orf26	84190	broad.mit.edu	37	12	82870468	82870468	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:82870468C>T	uc001szq.2	+	10	1639	c.1618C>T	c.(1618-1620)CGA>TGA	p.R540*		NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	540											0						GTATAAGCCTCGAATGAATGA	0.279													27	18					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86374086	86374086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:86374086G>A	uc001tai.3	-	8	1668	c.418C>T	c.(418-420)CAC>TAC	p.H140Y	MGAT4C_uc001tal.3_Missense_Mutation_p.H140Y|MGAT4C_uc001taj.3_Missense_Mutation_p.H140Y|MGAT4C_uc001tak.3_Missense_Mutation_p.H140Y|MGAT4C_uc010sum.1_Missense_Mutation_p.H164Y|MGAT4C_uc001tah.3_Missense_Mutation_p.H140Y	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	140	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TCTGCTAGGTGAACCACCACT	0.373													27	34					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	89992999	89992999	+	Silent	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:89992999A>C	uc001tbh.2	-	19	3427	c.3246T>G	c.(3244-3246)CCT>CCG	p.P1082P	ATP2B1_uc001tbg.2_Silent_p.P1082P|ATP2B1_uc009zsr.2_RNA|ATP2B1_uc001tbf.2_Silent_p.P716P	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	1082	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						ATTCCTCCTCAGGTATTTCTT	0.423													40	4					0	0	1	0	0
KERA	11081	broad.mit.edu	37	12	91449587	91449587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:91449587G>A	uc001tbl.2	-	2	1091	c.472C>T	c.(472-474)CCT>TCT	p.P158S		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	158	LRR 4.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						GTCCCTTGAGGAATTCTGGAC	0.393													91	8					0	0	1	0	0
EEA1	8411	broad.mit.edu	37	12	93173037	93173037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:93173037G>A	uc001tck.2	-	25	3773	c.3508C>T	c.(3508-3510)CAG>TAG	p.Q1170*		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	1170	Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						AATTTCTGCTGAATTAGAAGC	0.363													24	2					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97045493	97045493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:97045493G>A	uc001tet.1	+	3	353	c.275G>A	c.(274-276)AGC>AAC	p.S92N		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	92										skin(6)|ovary(1)	7						TTTCCTATTAGCCAAGATGGT	0.373													16	12					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97136260	97136260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:97136260C>T	uc001tet.1	+	19	2468	c.2390C>T	c.(2389-2391)TCC>TTC	p.S797F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	797										skin(6)|ovary(1)	7						GATCCTATTTCCCTAAATGCC	0.368													3	6					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	100166729	100166729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:100166729C>T	uc001tge.1	-	8	1516	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Missense_Mutation_p.E333K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	367						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTCCCAAGTTCTTCCTCTGAA	0.393													27	4					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101333182	101333182	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:101333182C>T	uc010svm.1	+	4	822	c.250C>T	c.(250-252)CTG>TTG	p.L84L	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Silent_p.L49L|ANO4_uc001thx.2_Silent_p.L84L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	84	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CCCTGGAAACCTGACTAGTAC	0.433										HNSCC(74;0.22)			39	5					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101413904	101413904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:101413904G>A	uc010svm.1	+	9	1399	c.827G>A	c.(826-828)GGA>GAA	p.G276E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G241E|ANO4_uc001thx.2_Missense_Mutation_p.G276E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	276	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TATGAAGAAGGAAAAAACAAG	0.318										HNSCC(74;0.22)			11	1					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101504308	101504308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:101504308C>T	uc010svm.1	+	23	2848	c.2276C>T	c.(2275-2277)CCT>CTT	p.P759L	ANO4_uc001thw.2_Missense_Mutation_p.P724L|ANO4_uc001thx.2_Missense_Mutation_p.P759L|ANO4_uc001thy.2_Missense_Mutation_p.P279L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	759	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGGAGGAGACCTTTAGCTTCA	0.368										HNSCC(74;0.22)			29	3					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101763609	101763609	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:101763609C>T	uc001tia.1	+	49	6651	c.6495C>T	c.(6493-6495)GAC>GAT	p.D2165D		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	2165					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGCTGAAGGACTATGCAAAGC	0.512													99	16					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	103988288	103988288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:103988288G>A	uc001tjw.2	+	3	517	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	111	Extracellular (Potential).|EGF-like 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGACTGTATAGGTAAGTGGCA	0.463													43	10					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104111584	104111584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:104111584G>A	uc001tjw.2	+	44	4834	c.4648G>A	c.(4648-4650)GGA>AGA	p.G1550R	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1550	Extracellular (Potential).|EGF-like 13.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CACTGGAGATGGAAAGGTCTG	0.532													100	10					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106460735	106460735	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:106460735G>A	uc001tlj.1	-	7	3211	c.1831C>T	c.(1831-1833)CAG>TAG	p.Q611*		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	611							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TCAAAGTCCTGGATCTGGAGG	0.612													19	24					0	0	1	0	0
CMKLR1	1240	broad.mit.edu	37	12	108685623	108685623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:108685623G>A	uc009zuw.2	-	3	1308	c.1117C>T	c.(1117-1119)CTT>TTT	p.L373F	CMKLR1_uc001tmw.2_Missense_Mutation_p.L373F|CMKLR1_uc001tmv.2_Missense_Mutation_p.L371F|CMKLR1_uc009zuv.2_Missense_Mutation_p.L373F	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	373	Cytoplasmic (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						GAGGATCAAAGCATGCCGGTC	0.478													33	95					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985661	108985661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:108985661C>T	uc001tng.2	-	2	662	c.499G>A	c.(499-501)GAT>AAT	p.D167N	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	167	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CGGGAGGAATCCAGGGCTTCC	0.582													12	60					0	0	1	0	0
DAO	1610	broad.mit.edu	37	12	109288127	109288127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109288127G>A	uc001tnr.3	+	7	749	c.596G>A	c.(595-597)CGG>CAG	p.R199Q	DAO_uc001tnq.3_Missense_Mutation_p.R133Q|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	199					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						CAGCCAGGCCGGGGGCAGATC	0.542													14	12					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109494566	109494566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109494566C>T	uc010sxi.1	+	2	267	c.163C>T	c.(163-165)CCC>TCC	p.P55S	USP30_uc001tnu.3_Missense_Mutation_p.P24S	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	55	Helical; (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						TATTTGGGGTCCCATTACAGA	0.383													79	80					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109623478	109623478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109623478C>T	uc001tob.2	+	12	2032	c.1913C>T	c.(1912-1914)CCC>CTC	p.P638L	ACACB_uc001toc.2_Missense_Mutation_p.P638L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	638	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TTTGAAACCCCCTCAAACCCT	0.572													9	44					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109629451	109629451	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109629451C>T	uc001tob.2	+	14	2297	c.2178C>T	c.(2176-2178)ATC>ATT	p.I726I	ACACB_uc001toc.2_Silent_p.I726I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	726	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AACTGTCCATCCGAGGCGACT	0.488													19	104					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109631489	109631489	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109631489C>T	uc001tob.2	+	16	2555	c.2436C>T	c.(2434-2436)CTC>CTT	p.L812L	ACACB_uc001toc.2_Silent_p.L812L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	812					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TACTGAACCTCGTAGATGTGG	0.517													11	49					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109862585	109862585	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109862585G>A	uc010sxn.1	+	16	1629	c.1629G>A	c.(1627-1629)AGG>AGA	p.R543R		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						TTATCCTGAGGGAATGCTTCC	0.507													7	39					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109865368	109865368	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:109865368G>A	uc010sxn.1	+	18	1878	c.1878G>A	c.(1876-1878)AGG>AGA	p.R626R		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						CATACCGAAGGAAATACGAGC	0.443													127	186					0	0	1	0	0
GPN3	51184	broad.mit.edu	37	12	110891655	110891655	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:110891655G>A	uc001tqr.2	-	7	741	c.685C>T	c.(685-687)CGA>TGA	p.R229*	GPN3_uc001tqs.2_Nonsense_Mutation_p.R239*	NM_016301	NP_057385	Q9UHW5	GPN3_HUMAN	GPN-loop GTPase 3 isoform 1	229						protein complex	GTP binding				0						GGTAAAAATCGAACCATGCTG	0.313													6	30					0	0	1	0	0
TCTN1	79600	broad.mit.edu	37	12	111057720	111057720	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:111057720G>A	uc009zvs.2	+	2	408	c.300G>A	c.(298-300)GTG>GTA	p.V100V	TCTN1_uc010syb.1_Silent_p.V100V|TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Silent_p.V40V|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Silent_p.V100V|TCTN1_uc001trn.3_Silent_p.V100V|TCTN1_uc001tri.2_Silent_p.V44V|TCTN1_uc001trj.1_Silent_p.V44V|TCTN1_uc001trk.3_RNA	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	100					multicellular organismal development	extracellular region					0						GCAGCTCCGTGGATTTCAGTG	0.443													19	81					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785666	111785666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:111785666C>T	uc001tsa.1	+	22	4151	c.3998C>T	c.(3997-3999)CCC>CTC	p.P1333L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1333	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GAGGAGCATCCCGACCCTCCG	0.622													43	76					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112230430	112230430	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:112230430C>T	uc001tst.2	+	9	1368	c.927C>T	c.(925-927)TTC>TTT	p.F309F	ALDH2_uc010syi.1_Silent_p.F262F|ALDH2_uc009zvy.2_Silent_p.F233F	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	309					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	AGGCCCACTTCGCCCTGTTCT	0.647			T	HMGA2	leiomyoma								5	11					0	0	1	0	0
NAA25	80018	broad.mit.edu	37	12	112485485	112485485	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:112485485A>C	uc001ttm.2	-	17	2010	c.1990T>G	c.(1990-1992)TGG>GGG	p.W664G	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Missense_Mutation_p.W636G|NAA25_uc009zwa.1_Missense_Mutation_p.W664G	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	664						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TTTGGATCCCAGCTGAAAAAA	0.313													107	129					0	0	1	0	0
OAS1	4938	broad.mit.edu	37	12	113344996	113344996	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113344996A>G	uc001tud.2	+	1	258	c.152A>G	c.(151-153)TAC>TGC	p.Y51C	OAS1_uc010syn.1_Missense_Mutation_p.Y50C|OAS1_uc010syo.1_Missense_Mutation_p.Y50C|OAS1_uc001tub.2_Missense_Mutation_p.Y51C|OAS1_uc001tuc.2_Missense_Mutation_p.Y51C|OAS1_uc009zwf.2_Missense_Mutation_p.Y50C	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	51					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						GGTAGCTCCTACCCTGTGTGT	0.507													39	52					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113400489	113400489	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113400489C>T	uc001tug.2	+	9	1953	c.1866C>T	c.(1864-1866)GCC>GCT	p.A622A		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	622	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AAGGACCAGCCCCTGCCTCTC	0.562													23	114					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113424969	113424969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113424969G>A	uc001tuj.2	+	2	444	c.304G>A	c.(304-306)GGG>AGG	p.G102R	OAS2_uc001tuh.2_Missense_Mutation_p.G102R|OAS2_uc001tui.1_Missense_Mutation_p.G102R	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	102	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						CGATAAAACTGGGGATAAGCT	0.438													15	54					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113442792	113442792	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113442792C>T	uc001tuj.2	+	7	1373	c.1233C>T	c.(1231-1233)CTC>CTT	p.L411L	OAS2_uc001tui.1_Silent_p.L411L	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	411	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						ATGCCGATCTCGTCGTGTTCC	0.478													27	41					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113445716	113445716	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113445716G>A	uc001tuj.2	+	9	2003	c.1863G>A	c.(1861-1863)AGG>AGA	p.R621R	OAS2_uc001tui.1_Silent_p.R621R	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	621	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AGACCGTGAGGAAGTTTCTAC	0.488													42	140					0	0	1	0	0
SLC24A6	80024	broad.mit.edu	37	12	113758212	113758212	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:113758212G>A	uc001tvc.2	-	7	828	c.618C>T	c.(616-618)ATC>ATT	p.I206I	SLC24A6_uc001tuz.2_5'Flank|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Intron	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	206	Helical; Name=4; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						TGTAGAAAACGATGTCCCTGA	0.622													69	217					0	0	1	0	0
TBX5	6910	broad.mit.edu	37	12	114793460	114793460	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:114793460G>A	uc001tvo.2	-	9	1929	c.1434C>T	c.(1432-1434)TCC>TCT	p.S478S	TBX5_uc001tvp.2_Silent_p.S478S|TBX5_uc001tvq.2_Silent_p.S428S	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	478					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GGGTGCCAGGGGACTGCAGGC	0.622													11	45					0	0	1	0	0
TBX5	6910	broad.mit.edu	37	12	114839701	114839701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:114839701G>A	uc001tvo.2	-	3	667	c.172C>T	c.(172-174)CTC>TTC	p.L58F	TBX5_uc001tvp.2_Missense_Mutation_p.L58F|TBX5_uc001tvq.2_Missense_Mutation_p.L8F|TBX5_uc010syv.1_Missense_Mutation_p.L58F	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	58	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CTTTCATGGAGAAACACTTTG	0.448													11	43					0	0	1	0	0
TBX3	6926	broad.mit.edu	37	12	115112504	115112504	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:115112504G>T	uc001tvt.1	-	7	2200	c.1236C>A	c.(1234-1236)GTC>GTA	p.V412V	TBX3_uc001tvu.1_Silent_p.V392V	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	412					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		GGTGAGCCTTGACCGCGGGGC	0.692													6	23					2.0095e-06	2.01665e-06	1	1	0
TBX3	6926	broad.mit.edu	37	12	115115394	115115394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:115115394C>T	uc001tvt.1	-	5	1896	c.932G>A	c.(931-933)AGA>AAA	p.R311K	TBX3_uc001tvu.1_Missense_Mutation_p.R291K	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	311					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CCTTTTTTCTCTTCGGCCATT	0.373													29	26					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116424210	116424210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:116424210G>A	uc001tvw.2	-	19	4254	c.4199C>T	c.(4198-4200)TCC>TTC	p.S1400F		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1400	Leucine-zipper.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		AAACGGCAAGGAGAATGGCGA	0.512													37	33					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117696834	117696834	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117696834C>T	uc001twm.1	-	15	3155	c.2469G>A	c.(2467-2469)GGG>GGA	p.G823G	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	823	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATCTCACCTCCCCATTCTCAG	0.488													11	50					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768530	117768530	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117768530C>T	uc001twm.1	-	2	1031	c.345G>A	c.(343-345)GGG>GGA	p.G115G		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	115	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCTTGGGGGTCCCATCACCTG	0.627													16	47					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768566	117768566	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117768566G>A	uc001twm.1	-	2	995	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	103	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGTGCGTGGTGAAACCTTCAG	0.622													14	42					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117907478	117907478	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117907478C>T	uc001two.2	-	19	2803	c.2748G>A	c.(2746-2748)TGG>TGA	p.W916*		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	945					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGCAGACTTCCAGAAATGTC	0.493													3	19					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117923411	117923411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117923411C>T	uc001two.2	-	15	2273	c.2218G>A	c.(2218-2220)GAA>AAA	p.E740K		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	769	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCACAATTTCTTGAGCAATC	0.502													8	55					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117996324	117996324	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:117996324G>A	uc001two.2	-	8	1348	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	460					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTCGGTGGATGATCAGAAGAT	0.453													11	51					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118198915	118198915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:118198915C>T	uc001two.2	-	4	855	c.800G>A	c.(799-801)CGA>CAA	p.R267Q		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	296					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TATCAGTTTTCGGGAGGAGGG	0.662													90	249					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118199270	118199270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:118199270C>T	uc001two.2	-	4	500	c.445G>A	c.(445-447)GAG>AAG	p.E149K		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	178					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGATTGTTCTCCTTCCCCGTC	0.597													21	88					0	0	1	0	0
TAOK3	51347	broad.mit.edu	37	12	118598041	118598041	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:118598041T>C	uc001twx.2	-	19	2557	c.2262A>G	c.(2260-2262)TTA>TTG	p.L754L	TAOK3_uc001twv.2_Silent_p.L294L|TAOK3_uc001tww.2_Silent_p.L584L|TAOK3_uc001twy.3_Silent_p.L754L	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	754	Potential.				MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCAGTGTCTTTAAGATTGTTT	0.393													26	106					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120586088	120586088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:120586088G>A	uc001txo.2	-	37	4622	c.4609C>T	c.(4609-4611)CCC>TCC	p.P1537S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1537	HEAT 9.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACAATGTTGGGTAGACAGGAT	0.557													19	43					0	0	1	0	0
PXN	5829	broad.mit.edu	37	12	120652729	120652729	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:120652729A>T	uc001txt.2	-	9	1308	c.1177T>A	c.(1177-1179)TCC>ACC	p.S393T	PXN_uc001txu.2_Missense_Mutation_p.S205T|PXN_uc001txv.2_Missense_Mutation_p.S274T|PXN_uc001txx.2_Missense_Mutation_p.S226T|PXN_uc001txy.2_Missense_Mutation_p.S359T|PXN_uc001txz.2_RNA	NM_001080855	NP_001074324	P49023	PAXI_HUMAN	paxillin isoform 1	393	LIM zinc-binding 1.				cell junction assembly|cell-matrix adhesion|cellular response to reactive oxygen species|epidermal growth factor receptor signaling pathway|growth hormone receptor signaling pathway|muscle contraction|signal complex assembly	cytoplasm|focal adhesion|lamellipodium|microtubule associated complex	beta-catenin binding|vinculin binding|zinc ion binding			ovary(1)|breast(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGTTCCGGGATCCGATCTCC	0.607													13	56					0	0	1	0	0
SPPL3	121665	broad.mit.edu	37	12	121206221	121206221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:121206221G>A	uc001tzd.2	-	8	1161	c.680C>T	c.(679-681)CCC>CTC	p.P227L	SPPL3_uc009zwz.2_Missense_Mutation_p.P220L|SPPL3_uc001tzc.2_Missense_Mutation_p.P57L	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	228						integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AACGTCAAGGGGATTGTCAGC	0.532													41	135					0	0	1	0	0
SPPL3	121665	broad.mit.edu	37	12	121206840	121206840	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:121206840G>A	uc001tzd.2	-	7	1006	c.525C>T	c.(523-525)GTC>GTT	p.V175V	SPPL3_uc009zwz.2_Silent_p.V175V|SPPL3_uc001tzc.2_Silent_p.V5V	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	176	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGATCATGGCGACACAGAGGC	0.567													7	18					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121691199	121691199	+	Silent	SNP	G	A	A	rs149343557		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:121691199G>A	uc001tzu.2	-	10	1108	c.984C>T	c.(982-984)ATC>ATT	p.I328I	CAMKK2_uc001tzt.2_Silent_p.I328I|CAMKK2_uc001tzv.2_Silent_p.I328I|CAMKK2_uc001tzw.2_Silent_p.I328I|CAMKK2_uc001tzx.2_Silent_p.I328I|CAMKK2_uc001tzy.2_Silent_p.I328I|CAMKK2_uc001tzz.1_Silent_p.I115I|CAMKK2_uc001uaa.1_Silent_p.I328I|CAMKK2_uc001uab.2_Silent_p.I328I|CAMKK2_uc001uac.2_Silent_p.I328I	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	328	Protein kinase.				calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CAAAGTCAGCGATCTTGATGT	0.567													128	482					0	0	1	0	0
ANAPC5	51433	broad.mit.edu	37	12	121758211	121758211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:121758211G>A	uc001uag.2	-	12	1614	c.1492C>T	c.(1492-1494)CCG>TCG	p.P498S	ANAPC5_uc010szu.1_Missense_Mutation_p.P164S|ANAPC5_uc001uae.2_Missense_Mutation_p.P62S|ANAPC5_uc010szv.1_Missense_Mutation_p.P100S|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Missense_Mutation_p.P386S|ANAPC5_uc001uai.1_Missense_Mutation_p.P100S	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	498					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTATTAGGCGGAAATCGTTCC	0.373													57	226					0	0	1	0	0
CLIP1	6249	broad.mit.edu	37	12	122825462	122825462	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:122825462T>C	uc001ucg.1	-	10	2395	c.2289A>G	c.(2287-2289)ACA>ACG	p.T763T	CLIP1_uc001uch.1_Silent_p.T752T|CLIP1_uc001uci.1_Silent_p.T717T|CLIP1_uc001ucj.1_Intron	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	763	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		TGAGCTGTGATGTAAAATTAT	0.398													89	93					0	0	1	0	0
CLIP1	6249	broad.mit.edu	37	12	122839846	122839846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:122839846G>A	uc001ucg.1	-	5	1125	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	CLIP1_uc001uch.1_Missense_Mutation_p.S340F|CLIP1_uc001uci.1_Missense_Mutation_p.S340F|CLIP1_uc001ucj.1_Missense_Mutation_p.S41F|CLIP1_uc009zxo.1_5'Flank|CLIP1_uc010tae.1_Intron	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	340					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		GTAACGGGAGGAGGTTTCAGT	0.567													27	33					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123482006	123482006	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:123482006C>T	uc001uej.1	-	10	1477	c.1338G>A	c.(1336-1338)AAG>AAA	p.K446K	PITPNM2_uc001uek.1_Silent_p.K446K	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	446					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		TAGCATCGCCCTTCTTGGAGC	0.682													41	115					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123782685	123782685	+	Silent	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:123782685T>A	uc010tap.1	-	30	3879	c.3879A>T	c.(3877-3879)CTA>CTT	p.L1293L	SBNO1_uc009zxv.2_RNA|SBNO1_uc010tao.1_Silent_p.L1292L|SBNO1_uc010taq.1_Silent_p.L244L	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1293							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TTTCACAAACTAGCCCCAAGC	0.403													19	41					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123798171	123798171	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:123798171A>G	uc010tap.1	-	23	3216	c.3216T>C	c.(3214-3216)TTT>TTC	p.F1072F	SBNO1_uc010tao.1_Silent_p.F1071F|SBNO1_uc010taq.1_Silent_p.F23F|SBNO1_uc001ues.1_Silent_p.F23F	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1072							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		AGTTACCTTTAAAAAATTCTC	0.313													6	23					0	0	1	0	0
EIF2B1	1967	broad.mit.edu	37	12	124118248	124118248	+	Splice_Site	SNP	C	T	T	rs11572912		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124118248C>T	uc001ufm.2	-	1	1	c.-142_splice	c.e1-1		GTF2H3_uc001ufo.1_5'Flank|GTF2H3_uc010tau.1_5'Flank|EIF2B1_uc001ufn.2_Splice_Site|EIF2B1_uc010tat.1_Splice_Site	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CCGTACCCCTCTTCCGGCGCA	0.711													8	23					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124297749	124297749	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124297749C>T	uc001uft.3	+	19	2854	c.2829C>T	c.(2827-2829)TGC>TGT	p.C943C	DNAH10_uc010tav.1_Silent_p.C485C|DNAH10_uc010taw.1_Silent_p.C428C	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	943	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCATAGAATGCCCACCTCAGA	0.398													5	40					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124315152	124315153	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124315152_124315153CC>TT	uc001uft.3	+	25	4122_4123	c.4097_4098CC>TT	c.(4096-4098)ACC>ATT	p.T1366I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1366	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GAAACGTTCACCTTGGAAAATA	0.386													21	30					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124323028	124323028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124323028C>T	uc001uft.3	+	28	4599	c.4574C>T	c.(4573-4575)CCC>CTC	p.P1525L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1525	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTAAAAGACCCCGTGATCAAG	0.547													12	22					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124352569	124352569	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124352569G>A	uc001uft.3	+	42	7093	c.7068G>A	c.(7066-7068)GAG>GAA	p.E2356E		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2356					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCCTGCTTGAGGATGGAAGGA	0.498													12	35					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124409699	124409699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124409699G>A	uc001uft.3	+	67	11540	c.11515G>A	c.(11515-11517)GAT>AAT	p.D3839N	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3839					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTTCCGTGTGGATCGGGTCTA	0.488													28	29					0	0	1	0	0
CCDC92	80212	broad.mit.edu	37	12	124421907	124421907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:124421907G>A	uc001ufw.1	-	5	841	c.694C>T	c.(694-696)CTT>TTT	p.L232F	CCDC92_uc001ufv.1_Missense_Mutation_p.L215F|CCDC92_uc001ufx.1_Missense_Mutation_p.L232F|CCDC92_uc001ufy.1_Missense_Mutation_p.L215F	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	232											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		TCCCGCAAAAGGAGTTTCCTG	0.592													21	52					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125397415	125397415	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:125397415G>A	uc001ugs.3	-	2	1351	c.903C>T	c.(901-903)CTC>CTT	p.L301L	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Silent_p.L301L|UBC_uc001ugt.2_Silent_p.L301L|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Silent_p.L149L	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	301	Ubiquitin-like 4.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TCCCACCTCTGAGACGGAGCA	0.532													9	143					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125397827	125397827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:125397827G>A	uc001ugs.3	-	2	939	c.491C>T	c.(490-492)ACC>ATC	p.T164I	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Missense_Mutation_p.T164I|UBC_uc001ugt.2_Missense_Mutation_p.T164I|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Missense_Mutation_p.T12I	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	164	Ubiquitin-like 3.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		GAGGGTGATGGTCTTACCAGT	0.512													30	197					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125900150	125900150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:125900150G>A	uc001uhe.1	+	3	1026	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	340	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGTCCAGGAGGAAATTGATAA	0.552													31	39					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126004123	126004123	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:126004123G>A	uc001uhe.1	+	4	1238	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	410	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TCGTCTCCGAGATCTTCGTCA	0.517													21	87					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126004129	126004129	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:126004129C>T	uc001uhe.1	+	4	1244	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	412	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCGAGATCTTCGTCAGCCAGA	0.517													22	91					0	0	1	0	0
SLC15A4	121260	broad.mit.edu	37	12	129278818	129278818	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:129278818T>C	uc001uhu.2	-	8	1710	c.1657A>G	c.(1657-1659)ATT>GTT	p.I553V	SLC15A4_uc001uhv.2_RNA	NM_145648	NP_663623	Q8N697	S15A4_HUMAN	solute carrier family 15, member 4	553	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.69e-06)|Epithelial(86;1.17e-05)|all cancers(50;5.07e-05)		TTCACAGAAATAATGAGGAAA	0.468													25	101					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	129563246	129563246	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:129563246T>C	uc009zyl.1	-	8	2276	c.1948A>G	c.(1948-1950)ATC>GTC	p.I650V	TMEM132D_uc001uia.2_Missense_Mutation_p.I188V	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	650	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCAGCGAGGATGGTGTCTGAC	0.567													18	64					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184762	130184762	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:130184762C>T	uc009zyl.1	-	2	889	c.561G>A	c.(559-561)GGG>GGA	p.G187G		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	187	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GCCCCAGGTCCCCCTGCAGCC	0.706													16	24					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	130185060	130185060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:130185060C>T	uc009zyl.1	-	2	591	c.263G>A	c.(262-264)AGG>AAG	p.R88K		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	88	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		AGGCAGCCTCCTGGATTTGTA	0.532													11	40					0	0	1	0	0
FZD10	11211	broad.mit.edu	37	12	130648036	130648036	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:130648036G>A	uc001uii.2	+	1	1005	c.549G>A	c.(547-549)AAG>AAA	p.K183K	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	183	Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		ACCCGCTGAAGGAcgggggcc	0.657													8	24					0	0	1	0	0
FZD10	11211	broad.mit.edu	37	12	130649062	130649062	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:130649062C>T	uc001uii.2	+	1	2031	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	525	Cytoplasmic (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		TTTGGACCTCCAAGACTCTGC	0.567													11	45					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130929739	130929739	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:130929739G>A	uc001uil.2	-	7	770	c.606C>T	c.(604-606)GTC>GTT	p.V202V	RIMBP2_uc001uim.2_Silent_p.V110V|RIMBP2_uc001uin.1_5'Flank	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	202	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TGTCTCCATAGACGTAGAGGT	0.557													41	74					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133254194	133254194	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:133254194G>A	uc001uks.1	-	7	734	c.690C>T	c.(688-690)ATC>ATT	p.I230I	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Silent_p.I203I	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	230					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TGGAGAGGCGGATGTGGTAGG	0.517								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					25	19					0	0	1	0	0
CHFR	55743	broad.mit.edu	37	12	133434021	133434021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:133434021G>A	uc001ulf.2	-	9	1156	c.1072C>T	c.(1072-1074)CTC>TTC	p.L358F	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.L346F|CHFR_uc010tbs.1_Missense_Mutation_p.L358F|CHFR_uc001uld.2_Missense_Mutation_p.L317F|CHFR_uc010tbt.1_Missense_Mutation_p.L266F	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	358					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		GCTTCCACGAGGTTGTTGAGG	0.632													21	49					0	0	1	0	0
CHFR	55743	broad.mit.edu	37	12	133434031	133434031	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:133434031G>A	uc001ulf.2	-	9	1146	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Silent_p.I342I|CHFR_uc010tbs.1_Silent_p.I354I|CHFR_uc001uld.2_Silent_p.I313I|CHFR_uc010tbt.1_Silent_p.I262I	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	354					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		GGTTGTTGAGGATGTGGTTTT	0.622													30	34					0	0	1	0	0
ZNF140	7699	broad.mit.edu	37	12	133683172	133683172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:133683172C>T	uc001ulo.2	+	5	1979	c.1309C>T	c.(1309-1311)CTT>TTT	p.L437F	ZNF140_uc001ulp.2_Missense_Mutation_p.L334F|ZNF140_uc010tbu.1_Missense_Mutation_p.L334F	NM_003440	NP_003431	P52738	ZN140_HUMAN	zinc finger protein 140	437						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;1.28e-06)|all_epithelial(31;0.0051)|Lung NSC(355;0.114)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		GACACACACTCTTGACAACCC	0.378													27	32					0	0	1	0	0
GJB2	2706	broad.mit.edu	37	13	20763697	20763697	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:20763697C>T	uc001umy.2	-	2	239	c.24G>A	c.(22-24)ACG>ACA	p.T8T		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	8	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		CCCCCAGGATCGTCTGCAGCG	0.512									Keratitis_Ichthyosis_and_Deafness_syndrome		OREG0022282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	24					0	0	1	0	0
XPO4	64328	broad.mit.edu	37	13	21357876	21357876	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:21357876G>A	uc001unq.3	-	23	3477	c.3441C>T	c.(3439-3441)CTC>CTT	p.L1147L		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	1147					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		TTACACAAAGGAGACCACCAA	0.403													14	28					0	0	1	0	0
CENPJ	55835	broad.mit.edu	37	13	25458130	25458130	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:25458130G>A	uc001upt.3	-	16	4048	c.3795C>T	c.(3793-3795)TTC>TTT	p.F1265F	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	1265					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		TACCATCTGGGAAAATGCTTT	0.398													31	4					0	0	1	0	0
CENPJ	55835	broad.mit.edu	37	13	25479685	25479685	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:25479685T>A	uc001upt.3	-	7	2744	c.2491A>T	c.(2491-2493)ATA>TTA	p.I831L	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	831					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		AGGATACCTATTTCATTATTA	0.443													23	22					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28608113	28608113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:28608113G>A	uc001urw.2	-	15	1935	c.1853C>T	c.(1852-1854)TCA>TTA	p.S618L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S618L	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	618	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G617_S618ins21(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AAAAGCACCTGATCCTAGTAC	0.403			Mis|O		AML|ALL								47	50					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29012450	29012450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:29012450C>T	uc001usb.3	-	4	706	c.421G>A	c.(421-423)GAA>AAA	p.E141K	FLT1_uc010aar.1_Missense_Mutation_p.E141K|FLT1_uc001usc.3_Missense_Mutation_p.E141K|FLT1_uc010tdp.1_Missense_Mutation_p.E141K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	141	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCGGGGATTTCACTGTACATC	0.373													6	12					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599996	29599996	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:29599996G>A	uc001usl.3	+	1	1249	c.1191G>A	c.(1189-1191)GGG>GGA	p.G397G		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	387						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TCAACCCAGGGGAGCAGGATT	0.562													9	1					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29855947	29855947	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:29855947G>A	uc001usl.3	+	4	2839	c.2781G>A	c.(2779-2781)GTG>GTA	p.V927V		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	917	Localization to the growing distal tip of microtubules.|Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CCTCCAGTGTGACAGCACCCC	0.582													18	30					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32813462	32813462	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:32813462G>A	uc001utx.2	+	45	6988	c.6492G>A	c.(6490-6492)AAG>AAA	p.K2164K	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2164					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AGTTCTGTAAGGATATAGCCG	0.453													14	35					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32836468	32836468	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:32836468C>T	uc001utx.2	+	53	8131	c.7635C>T	c.(7633-7635)CCC>CCT	p.P2545P	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Silent_p.P100P|FRY_uc001utz.2_Silent_p.P70P|FRY_uc010tdx.1_5'Flank	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2545					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTCTCTCCCCCTCTGAAGAGA	0.423													9	22					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32972405	32972405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:32972405C>T	uc001uub.1	+	27	9982	c.9755C>T	c.(9754-9756)TCT>TTT	p.S3252F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3252					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		ACTTCAAAGTCTTGTAAAGGG	0.413			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			32	67					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33634886	33634886	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:33634886T>C	uc001uus.2	+	4	1678	c.1670T>C	c.(1669-1671)CTT>CCT	p.L557P	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	557	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AGTAAAAGGCTTATTAAAGTG	0.468													24	43					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635652	33635652	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:33635652C>T	uc001uus.2	+	4	2444	c.2436C>T	c.(2434-2436)ATC>ATT	p.I812I	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	812	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		ATACCACCATCCTTGTAGACT	0.388													13	28					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635751	33635751	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:33635751G>A	uc001uus.2	+	4	2543	c.2535G>A	c.(2533-2535)GTG>GTA	p.V845V	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	845	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CCAGTCAGGTGGCGGTAGTGC	0.483													18	45					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35644898	35644898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:35644898C>T	uc001uvb.2	+	11	1686	c.1480C>T	c.(1480-1482)CAT>TAT	p.H494Y		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	494						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAGTGCAATTCATTCAATTGG	0.333													23	26					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35745412	35745412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:35745412G>A	uc001uvb.2	+	26	4452	c.4246G>A	c.(4246-4248)GAA>AAA	p.E1416K	NBEA_uc010abi.2_Missense_Mutation_p.E104K	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1416						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTTAAAGACGGAATTGGAAAA	0.333													12	17					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35745584	35745584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:35745584G>A	uc001uvb.2	+	26	4624	c.4418G>A	c.(4417-4419)AGA>AAA	p.R1473K	NBEA_uc010abi.2_Missense_Mutation_p.R161K	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1473						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CAGTGCCTAAGATTAGGTAAG	0.333													29	68					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35756611	35756611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:35756611G>A	uc001uvb.2	+	29	4983	c.4777G>A	c.(4777-4779)GGA>AGA	p.G1593R	NBEA_uc010abi.2_Missense_Mutation_p.G281R	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1593						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TACAAGAACTGGAAGCCAACC	0.378													19	24					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	36242559	36242559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:36242559G>A	uc001uvb.2	+	57	8859	c.8653G>A	c.(8653-8655)GTA>ATA	p.V2885I	NBEA_uc010abi.2_Missense_Mutation_p.V1543I|NBEA_uc010tef.1_Missense_Mutation_p.V678I|NBEA_uc001uvd.2_Missense_Mutation_p.V463I	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2885	WD 4.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGACAATGGGGTAGTAGAGGT	0.458													5	17					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37427646	37427646	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:37427646G>A	uc001uvw.2	-	6	1513	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	SMAD9_uc001uvx.2_Silent_p.F353F|SMAD9_uc010tep.1_Silent_p.F183F	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	390	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GGAGCTGAGCGAAGAGCTGGT	0.532													12	32					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37446810	37446810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:37446810G>A	uc001uvw.2	-	3	998	c.655C>T	c.(655-657)CCC>TCC	p.P219S	SMAD9_uc001uvx.2_Missense_Mutation_p.P219S|SMAD9_uc010tep.1_Missense_Mutation_p.P49S	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	219					BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		TGTTGATAGGGACTCTCTGGC	0.532													12	25					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38144719	38144719	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:38144719G>C	uc001uwo.3	-	19	2385	c.2267C>G	c.(2266-2268)ACA>AGA	p.T756R	POSTN_uc010tet.1_Missense_Mutation_p.T257R|POSTN_uc001uwp.3_Missense_Mutation_p.T699R|POSTN_uc001uwr.2_Missense_Mutation_p.T729R|POSTN_uc001uwq.2_Missense_Mutation_p.T699R|POSTN_uc010teu.1_Missense_Mutation_p.T729R|POSTN_uc010tev.1_Intron|POSTN_uc010tew.1_Intron	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	756					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		ATGGCTACCTGTAATGATTCG	0.323													29	22					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38160304	38160304	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:38160304C>T	uc001uwo.3	-	7	985	c.867G>A	c.(865-867)AGG>AGA	p.R289R	POSTN_uc001uwp.3_Silent_p.R289R|POSTN_uc001uwr.2_Silent_p.R289R|POSTN_uc001uwq.2_Silent_p.R289R|POSTN_uc010teu.1_Silent_p.R289R|POSTN_uc010tev.1_Silent_p.R289R|POSTN_uc010tew.1_Silent_p.R289R|POSTN_uc010tex.1_Silent_p.R204R	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	289	FAS1 2.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CTCCCATGATCCTTTCTAGGA	0.468													24	46					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39265585	39265585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:39265585G>A	uc001uwv.2	+	1	4413	c.4104G>A	c.(4102-4104)ATG>ATA	p.M1368I		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1368	Extracellular (Potential).|CSPG 9.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CACTGGGCATGAATTTTACCC	0.393													28	17					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39266535	39266535	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:39266535A>G	uc001uwv.2	+	1	5363	c.5054A>G	c.(5053-5055)AAA>AGA	p.K1685R		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1685	Extracellular (Potential).|CSPG 12.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AAAATATTGAAAGTGGAGGAC	0.483													18	46					0	0	1	0	0
C13orf23	80209	broad.mit.edu	37	13	39588581	39588581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:39588581G>A	uc001uwy.2	-	11	1681	c.808C>T	c.(808-810)CCT>TCT	p.P270S	C13orf23_uc001uwz.2_Missense_Mutation_p.P248S	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	270	Pro-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GAACCATGAGGAGAAAAGAGT	0.433													23	11					0	0	1	0	0
FOXO1	2308	broad.mit.edu	37	13	41133979	41133979	+	Missense_Mutation	SNP	G	A	A	rs149675484		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:41133979G>A	uc001uxl.3	-	2	2034	c.1649C>T	c.(1648-1650)TCG>TTG	p.S550L	FOXO1_uc010acc.1_Missense_Mutation_p.S365L	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	550					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		GTTCATACCCGAGGTGTGGGG	0.612													32	99					0	0	1	0	0
FOXO1	2308	broad.mit.edu	37	13	41134548	41134548	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:41134548G>A	uc001uxl.3	-	2	1465	c.1080C>T	c.(1078-1080)CCC>CCT	p.P360P	FOXO1_uc010acc.1_Silent_p.P175P	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	360					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		CAGACAGACTGGGTAAAGTAG	0.458													78	33					0	0	1	0	0
KBTBD7	84078	broad.mit.edu	37	13	41768229	41768229	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:41768229G>A	uc001uxw.1	-	1	474	c.165C>T	c.(163-165)TCC>TCT	p.S55S	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	55							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		CGTCGTAGAAGGACTTGAGCT	0.607													33	24					0	0	1	0	0
DGKH	160851	broad.mit.edu	37	13	42763247	42763247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:42763247C>T	uc001uyl.1	+	15	1735	c.1714C>T	c.(1714-1716)CCT>TCT	p.P572S	DGKH_uc010tfh.1_Missense_Mutation_p.P572S|DGKH_uc001uym.1_Missense_Mutation_p.P572S|DGKH_uc010tfi.1_Missense_Mutation_p.P327S|DGKH_uc010tfj.1_Missense_Mutation_p.P427S|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.P427S|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	572					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GCCTGTTCTCCCTGGCCTCAG	0.512													40	17					0	0	1	0	0
DGKH	160851	broad.mit.edu	37	13	42793828	42793828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:42793828C>T	uc001uyl.1	+	28	3361	c.3340C>T	c.(3340-3342)CCT>TCT	p.P1114S	DGKH_uc010tfh.1_Missense_Mutation_p.P1114S|DGKH_uc001uym.1_Missense_Mutation_p.P1114S|DGKH_uc010tfi.1_Missense_Mutation_p.P869S|DGKH_uc010tfj.1_Missense_Mutation_p.P969S|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.P969S|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	1114					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		ACAGGAACCTCCTATGGATTG	0.363													4	11					0	0	1	0	0
AKAP11	11215	broad.mit.edu	37	13	42875112	42875112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:42875112C>T	uc001uys.1	+	8	2405	c.2230C>T	c.(2230-2232)CCT>TCT	p.P744S		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	744					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CACGTTTTCCCCTTCTTTTCA	0.418													19	40					0	0	1	0	0
AKAP11	11215	broad.mit.edu	37	13	42882663	42882663	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:42882663G>C	uc001uys.1	+	9	5366	c.5191G>C	c.(5191-5193)GAC>CAC	p.D1731H		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1731	Ser-rich.				intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TATTGGTGATGACAGCACTGG	0.363													16	38					0	0	1	0	0
NUFIP1	26747	broad.mit.edu	37	13	45515448	45515448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:45515448G>A	uc001uzp.2	-	10	1423	c.1381C>T	c.(1381-1383)CCG>TCG	p.P461S		NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	461					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		CGAATGTCCGGAGCTAGAAGC	0.318													9	19					0	0	1	0	0
NUFIP1	26747	broad.mit.edu	37	13	45517738	45517738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:45517738G>A	uc001uzp.2	-	9	1252	c.1210C>T	c.(1210-1212)CCA>TCA	p.P404S		NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	404					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		TCTTGACTTGGACTCTTAGGA	0.358													29	48					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46287427	46287427	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:46287427C>T	uc001van.1	+	3	347	c.267C>T	c.(265-267)TCC>TCT	p.S89S	SPERT_uc001vao.2_Silent_p.S53S	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	89						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		GCCAGCACTCCTATCCACTGA	0.682													37	19					0	0	1	0	0
SUCLA2	8803	broad.mit.edu	37	13	48575367	48575367	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:48575367C>T	uc001vbs.2	-	1	96	c.39G>A	c.(37-39)GTG>GTA	p.V13V	SUCLA2_uc010tgb.1_5'Flank|SUCLA2_uc010tgc.1_5'UTR|SUCLA2_uc010tgd.1_Intron|SUCLA2_uc001vbt.1_RNA|SUCLA2_uc001vbu.1_Silent_p.V13V	NM_003850	NP_003841	Q9P2R7	SUCB1_HUMAN	succinate-CoA ligase, ADP-forming, beta subunit	13					succinyl-CoA pathway|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			central_nervous_system(1)	1		all_cancers(8;1.13e-24)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|Lung NSC(96;0.000226)|all_hematologic(8;0.000885)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;2.1e-06)	Succinic acid(DB00139)	GAAGGGTGGCCACGGCCACTA	0.697													3	8					0	0	1	0	0
SERPINE3	647174	broad.mit.edu	37	13	51921322	51921322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:51921322C>T	uc001vfh.2	+	3	712	c.652C>T	c.(652-654)CTC>TTC	p.L218F	SERPINE3_uc010tgp.1_Missense_Mutation_p.L218F	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	218					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						TGCCTATGGCCTCGTCCTTCA	0.557													8	18					0	0	1	0	0
INTS6	26512	broad.mit.edu	37	13	51943425	51943425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:51943425G>A	uc001vfk.2	-	16	2740	c.2126C>T	c.(2125-2127)TCG>TTG	p.S709L	INTS6_uc001vfi.2_Missense_Mutation_p.S393L|INTS6_uc001vfj.2_Missense_Mutation_p.S696L|INTS6_uc001vfl.2_Missense_Mutation_p.S531L	NM_012141	NP_036273	Q9UL03	INT6_HUMAN	integrator complex subunit 6 isoform a	709					snRNA processing	actin cytoskeleton|integrator complex	protein binding|transmembrane receptor activity			ovary(1)|lung(1)	2		Breast(56;0.000286)|Lung NSC(96;0.00145)|Prostate(109;0.00403)|Hepatocellular(98;0.065)|Myeloproliferative disorder(33;0.163)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;7.7e-08)		ATGTATTATCGAATCATTAGT	0.353													11	34					0	0	1	0	0
WDFY2	115825	broad.mit.edu	37	13	52313275	52313275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:52313275G>A	uc001vfp.2	+	7	1029	c.689G>A	c.(688-690)GGG>GAG	p.G230E	WDFY2_uc010ads.1_Missense_Mutation_p.G230E|WDFY2_uc010adt.1_RNA	NM_052950	NP_443182	Q96P53	WDFY2_HUMAN	WD repeat and FYVE domain containing 2	230	WD 5.						metal ion binding				0		Breast(56;0.000208)|Lung NSC(96;0.000517)|Prostate(109;0.0041)|Hepatocellular(98;0.0652)|Myeloproliferative disorder(33;0.164)|all_neural(104;0.191)		GBM - Glioblastoma multiforme(99;9e-08)		GACATCGGTGGGAGAAAAGGA	0.512													37	23					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53418923	53418923	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:53418923C>T	uc001vhi.2	-	3	3188	c.2985G>A	c.(2983-2985)CGG>CGA	p.R995R	PCDH8_uc001vhj.2_Silent_p.R898R	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	995	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GCAGAGGATCCCGAGGCAGTG	0.592													14	45					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58208178	58208178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:58208178G>A	uc001vhq.1	+	1	2390	c.1498G>A	c.(1498-1500)GAC>AAC	p.D500N	PCDH17_uc010aec.1_Missense_Mutation_p.D500N	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	500	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CCAGGATCCCGACCTGGGCCA	0.602													9	30					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	67205428	67205428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:67205428G>A	uc001vik.2	-	4	3946	c.3254C>T	c.(3253-3255)CCT>CTT	p.P1085L	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Missense_Mutation_p.P1051L|PCDH9_uc010thl.1_Intron	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1085	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CTGAACCAGAGGAAGAGGGTG	0.552													22	63					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70456521	70456521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:70456521G>A	uc001vip.2	-	5	1915	c.1121C>T	c.(1120-1122)ACC>ATC	p.T374I	KLHL1_uc010thm.1_Missense_Mutation_p.T313I	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	374					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ATGGAAGATGGTTTCTTCATC	0.423													15	37					0	0	1	0	0
PIBF1	10464	broad.mit.edu	37	13	73357849	73357849	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:73357849A>T	uc001vjc.2	+	2	547	c.242A>T	c.(241-243)TAT>TTT	p.Y81F	PIBF1_uc001vja.1_Missense_Mutation_p.Y81F|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.Y81F|PIBF1_uc010aep.2_Intron|DIS3_uc001viy.3_5'Flank|DIS3_uc001vix.3_5'Flank|DIS3_uc001viz.2_5'Flank	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	81						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		AAAGTGGATTATCTTACAAAG	0.303													16	31					0	0	1	0	0
KLF12	11278	broad.mit.edu	37	13	74387374	74387374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:74387374C>T	uc001vjf.2	-	5	943	c.721G>A	c.(721-723)GAT>AAT	p.D241N	KLF12_uc010aeq.2_Missense_Mutation_p.D241N|KLF12_uc001vjg.3_Missense_Mutation_p.D241N	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	241					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		TCATCATCATCACTGTCACTT	0.428													13	43					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453631	84453631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:84453631G>A	uc001vlk.2	-	1	2898	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	671	Cytoplasmic (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTGCCAGTAGGAAGAGTCACA	0.537													8	22					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453706	84453706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:84453706C>T	uc001vlk.2	-	1	2823	c.1937G>A	c.(1936-1938)CGA>CAA	p.R646Q		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	646	Cytoplasmic (Potential).					integral to membrane		p.R646*(1)		ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GGACCGCTTTCGGTTCCTCAG	0.562													6	36					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92345806	92345806	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:92345806C>T	uc010tif.1	+	3	1057	c.691C>T	c.(691-693)CTG>TTG	p.L231L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	231						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GGCACTCAATCTGGGCATTGA	0.537													9	21					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96239872	96239872	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:96239872C>T	uc001vmk.2	-	20	2991	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Silent_p.G189G|DZIP1_uc001vml.2_Silent_p.G694G	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	713					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CTGTGTTCTTCCCGAAGCTGC	0.572													38	26					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97484827	97484827	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:97484827G>A	uc001vmw.2	+	2	815	c.791G>A	c.(790-792)TGG>TAG	p.W264*		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	264	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GGGGCCACTTGGAAAACCTCT	0.512													11	28					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99358477	99358477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:99358477C>T	uc001vno.2	-	16	1257	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	394	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	ATTTGGACTTCGTTTCCTTTG	0.378													10	15					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99361879	99361879	+	Silent	SNP	C	T	T	rs149819086		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:99361879C>T	uc001vno.2	-	14	1091	c.1014G>A	c.(1012-1014)CCG>CCA	p.P338P		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	338	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CATCGAAGATCGGGACCATGA	0.517													8	25					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99362128	99362128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:99362128C>T	uc001vno.2	-	12	1015	c.938G>A	c.(937-939)GGG>GAG	p.G313E		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	313	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TACGATTTTCCCGGACATAGT	0.373													34	27					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101742293	101742293	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:101742293G>A	uc001vox.1	-	29	3483	c.3294C>T	c.(3292-3294)TTC>TTT	p.F1098F		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1098	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCACATTGTCGAAATTAAAGT	0.463													53	152					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101756703	101756703	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:101756703G>A	uc001vox.1	-	25	3021	c.2832C>T	c.(2830-2832)TTC>TTT	p.F944F		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	944	Helical; Name=S2 of repeat III; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CAGTTGGAGTGAAAAATAAGC	0.368													14	42					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101997716	101997716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:101997716C>T	uc001vox.1	-	7	889	c.700G>A	c.(700-702)GAA>AAA	p.E234K	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.E234K|NALCN_uc001vpa.2_Missense_Mutation_p.E234K	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	234	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TAGCCTTCTTCTAGCTCTGGT	0.438													23	63					0	0	1	0	0
ITGBL1	9358	broad.mit.edu	37	13	102227834	102227834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:102227834G>A	uc001vpb.2	+	4	742	c.523G>A	c.(523-525)GGT>AGT	p.G175S	ITGBL1_uc010agb.2_Missense_Mutation_p.G126S|ITGBL1_uc001vpc.3_Missense_Mutation_p.G34S	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	175	III.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACTTGTGTATGGTAAATTTTG	0.358													31	99					0	0	1	0	0
FGF14	2259	broad.mit.edu	37	13	102375206	102375206	+	Missense_Mutation	SNP	G	A	A	rs146611222		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:102375206G>A	uc001vpe.2	-	5	719	c.719C>T	c.(718-720)CCA>CTA	p.P240L	FGF14_uc001vpf.2_Missense_Mutation_p.P245L|FGF14_uc001vpd.1_5'Flank	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	240					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTTGTTGACTGGTTTGCCTCC	0.483													9	23					0	0	1	0	0
ERCC5	2073	broad.mit.edu	37	13	103474477	103474477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:103474477C>T	uc001vpu.1	+	5	991	c.869C>T	c.(868-870)CCT>CTT	p.P290L	BIVM_uc001vps.2_Missense_Mutation_p.P290L|BIVM_uc010agc.2_Missense_Mutation_p.P61L|BIVM_uc001vpv.2_Missense_Mutation_p.P61L	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	Error:Variant_position_missing_in_P28715_after_alignment					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTATATAAGCCTCATGGGAAG	0.274			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				15	32					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698526	103698526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:103698526G>A	uc001vpy.3	-	6	1601	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	335	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTATAAAACGATGACTCTGG	0.373													30	14					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703762	103703762	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:103703762G>A	uc001vpy.3	-	4	1203	c.606C>T	c.(604-606)GCC>GCT	p.A202A		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	202	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CAATGAGGATGGCGCCCGCGA	0.438													6	26					0	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110827619	110827619	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:110827619C>T	uc001vqw.3	-	37	3266	c.3144G>A	c.(3142-3144)GAG>GAA	p.E1048E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1048	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTGCCCTTTCTCTCCTTTTG	0.567													15	43					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111156522	111156522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:111156522G>A	uc001vqx.2	+	45	4602	c.4313G>A	c.(4312-4314)GGG>GAG	p.G1438E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1438	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGGAAAGCTGGGCCCCAAGGA	0.607													37	20					0	0	1	0	0
ING1	3621	broad.mit.edu	37	13	111368024	111368024	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:111368024C>T	uc001vri.2	+	1	666	c.234C>T	c.(232-234)TCC>TCT	p.S78S	CARS2_uc010tjm.1_5'Flank|uc001vre.2_5'Flank|ING1_uc001vrf.2_Intron|ING1_uc001vrg.2_Intron|ING1_uc001vrh.2_Intron	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	78					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			CGTGCTCTTCCGCCCTGCGGT	0.677													9	12					0	0	1	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113212622	113212622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:113212622G>A	uc001vse.1	-	5	623	c.436C>T	c.(436-438)CGG>TGG	p.R146W	TUBGCP3_uc010tjq.1_Missense_Mutation_p.R136W|TUBGCP3_uc001vsf.2_Missense_Mutation_p.R146W|TUBGCP3_uc001vsg.1_Missense_Mutation_p.R146W	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	146					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					TGGGCACTCCGATCTTGGTAG	0.602													36	72					0	0	1	0	0
Unknown	0	broad.mit.edu	37	13	113556606	113556606	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:113556606G>A	uc001vso.2	+	1		c.98G>A								Homo sapiens cDNA clone IMAGE:5185971, partial cds.																		CCAAAAAGGAGGAAACGGATC	0.537													5	16					0	0	1	0	0
ADPRHL1	113622	broad.mit.edu	37	13	114083399	114083399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:114083399C>T	uc001vtq.1	-	4	601	c.514G>A	c.(514-516)GGC>AGC	p.G172S	ADPRHL1_uc001vtp.1_Missense_Mutation_p.G90S	NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	172					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			CACAGGGAGCCCAGGAAGCCT	0.692													4	14					0	0	1	0	0
TMCO3	55002	broad.mit.edu	37	13	114164666	114164666	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:114164666C>T	uc001vtu.3	+	7	1513	c.1152C>T	c.(1150-1152)TCC>TCT	p.S384S	TMCO3_uc001vtt.3_Silent_p.S384S	NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	384						integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			TCTTCATTTCCACGTGTCTGT	0.537													24	61					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19377812	19377812	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:19377812C>T	uc010tkp.1	+	1	219	c.219C>T	c.(217-219)CCC>CCT	p.P73P		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTCACACTCCCATGTACATGT	0.413													30	122					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19378024	19378024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:19378024C>T	uc010tkp.1	+	1	431	c.431C>T	c.(430-432)CCC>CTC	p.P144L		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	144	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCTGCCGTCCCTTGCTCTAT	0.448													48	216					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553689	19553689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:19553689G>A	uc001vuz.1	+	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	91										ovary(1)	1						ACTCTGCTATGAAGACACTCA	0.622													31	435					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553722	19553722	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:19553722C>T	uc001vuz.1	+	1	358	c.306C>T	c.(304-306)TGC>TGT	p.C102C	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	102										ovary(1)	1						GCAAGTGGTGCTGCCACTGCT	0.617													78	462					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19562096	19562096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:19562096G>A	uc001vuz.1	+	4	965	c.913G>A	c.(913-915)GGA>AGA	p.G305R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	305	ANK 5.									ovary(1)	1						GGATAGATATGGAAGGTATAG	0.328													15	1					0	0	1	0	0
P704P	641455	broad.mit.edu	37	14	20019948	20019948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20019948C>T	uc001vwc.3	-	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	91											0						TGAGTGTCTTCATAGCAGAGT	0.632													44	286					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20248603	20248603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20248603G>A	uc010tku.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTACCAGGAAATATCCTT	0.423													108	192					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20249051	20249051	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20249051C>T	uc010tku.1	+	1	570	c.570C>T	c.(568-570)GCC>GCT	p.A190A		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGCCTGTGCCAACACCTTCC	0.473													84	181					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389257	20389257	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20389257G>A	uc010tkw.1	+	1	492	c.492G>A	c.(490-492)GTG>GTA	p.V164V		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATTTACTGTGAACCTGCCTT	0.443													72	255					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20403870	20403870	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20403870G>A	uc001vwj.1	+	1	45	c.45G>A	c.(43-45)TTG>TTA	p.L15L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTGTACTTTTGGGACTCTCTA	0.348													66	215					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404375	20404375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20404375G>A	uc001vwj.1	+	1	550	c.550G>A	c.(550-552)GTG>ATG	p.V184M		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CCTTCCCTTGGTGATAGAGCT	0.453													63	120					0	0	1	0	0
OR4K14	122740	broad.mit.edu	37	14	20483286	20483286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20483286G>A	uc010tky.1	-	1	67	c.67C>T	c.(67-69)CTT>TTT	p.L23F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		AAATTTTGAAGATGTCGTGAA	0.398													12	22					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528262	20528262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20528262G>A	uc001vwn.1	+	1	59	c.59G>A	c.(58-60)CGA>CAA	p.R20Q		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TTTTTTGGACGATGGGAACTT	0.363													61	87					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528836	20528836	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20528836C>T	uc001vwn.1	+	1	633	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TCACCTGTTTCATCCTCTTGC	0.453													21	115					0	0	1	0	0
OR4K17	390436	broad.mit.edu	37	14	20586399	20586399	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20586399G>A	uc001vwo.1	+	1	834	c.834G>A	c.(832-834)GTG>GTA	p.V278V		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCACAGTGGTGATTCTCTTCT	0.443													29	40					0	0	1	0	0
OR4N5	390437	broad.mit.edu	37	14	20612077	20612077	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20612077C>T	uc010tla.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		CCCTCTATTTCTTTCTGGGCA	0.453													57	193					0	0	1	0	0
OR4N5	390437	broad.mit.edu	37	14	20612527	20612527	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20612527C>T	uc010tla.1	+	1	633	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCCTGTGCTTCCTGGGCCTTC	0.527													21	43					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665671	20665671	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20665671G>A	uc010tlb.1	+	1	177	c.177G>A	c.(175-177)AGG>AGA	p.R59R		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	59	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTTGCCCCAGGGAGGGGCAGA	0.532													25	27					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20666202	20666202	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:20666202C>T	uc010tlb.1	+	1	708	c.708C>T	c.(706-708)GTC>GTT	p.V236V		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	236	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TAGAGCTTGTCTTTTCTGTCT	0.468													65	95					0	0	1	0	0
RNASE3	6037	broad.mit.edu	37	14	21360231	21360231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:21360231C>T	uc001vyj.2	+	2	440	c.386C>T	c.(385-387)CCA>CTA	p.P129L		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	129					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	GCAGACAGACCAGGAAGGAGG	0.473													17	60					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793478	21793478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:21793478G>A	uc001wag.2	+	15	2303	c.2303G>A	c.(2302-2304)CGA>CAA	p.R768Q	RPGRIP1_uc001wah.2_Missense_Mutation_p.R410Q|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.R243Q|RPGRIP1_uc010aim.2_Missense_Mutation_p.R151Q|RPGRIP1_uc001wal.2_Missense_Mutation_p.R127Q|RPGRIP1_uc001wam.2_Missense_Mutation_p.R85Q	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	768					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TGCAATAAACGAAAGAAAGCC	0.542													4	14					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21796656	21796656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:21796656G>A	uc001wag.2	+	18	2969	c.2969G>A	c.(2968-2970)GGA>GAA	p.G990E	RPGRIP1_uc001wah.2_Missense_Mutation_p.G632E|RPGRIP1_uc001wai.2_Missense_Mutation_p.G316E|RPGRIP1_uc001wak.2_Missense_Mutation_p.G465E|RPGRIP1_uc010aim.2_Missense_Mutation_p.G373E|RPGRIP1_uc001wal.2_Missense_Mutation_p.G349E|RPGRIP1_uc001wam.2_Missense_Mutation_p.G307E	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	990	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CCTCATGGGGGAGAAAGAAAG	0.433													30	43					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21860086	21860086	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:21860086G>T	uc001was.1	-	35	6048	c.5954C>A	c.(5953-5955)ACA>AAA	p.T1985K	CHD8_uc001war.1_Missense_Mutation_p.T1881K	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2264					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CTTCTGGAATGTTAACTTCAA	0.433													8	39					1.76689e-08	1.77617e-08	1	1	0
CHD8	57680	broad.mit.edu	37	14	21878090	21878090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:21878090C>T	uc001was.1	-	11	1541	c.1447G>A	c.(1447-1449)GAG>AAG	p.E483K	CHD8_uc001war.1_Missense_Mutation_p.E379K|CHD8_uc001wav.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	762	Chromo 2.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCTTTTAGCTCCCATGTGCTA	0.423													37	43					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102955	22102955	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:22102955T>C	uc010tmc.1	-	1	44	c.44A>G	c.(43-45)GAT>GGT	p.D15G		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		AAGAATGAAATCTGTCACCAC	0.463													76	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22111803	22111803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:22111803G>A	uc001wbk.3	+	2	407	c.374G>A	c.(373-375)AGA>AAA	p.R125K						SubName: Full=Putative uncharacterized protein ENSP00000374930;																		TGTGCTGTGAGAGACACGGTG	0.458													16	48					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133562	22133562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:22133562G>A	uc010tmd.1	+	1	266	c.266G>A	c.(265-267)AGA>AAA	p.R89K		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CTTTTAGAAAGAAAGACCATT	0.443													122	121					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133575	22133575	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:22133575C>T	uc010tmd.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		AGACCATTTCCTTTGACAACT	0.438													102	130					0	0	1	0	0
LRP10	26020	broad.mit.edu	37	14	23346314	23346314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23346314C>T	uc001whd.2	+	7	2273	c.1720C>T	c.(1720-1722)CGG>TGG	p.R574W	LRP10_uc001whe.2_Intron	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	574	Cytoplasmic (Potential).|Arg-rich.				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CACCCCGGCTCGGGCCTCTGA	0.706													21	27					0	0	1	0	0
RBM23	55147	broad.mit.edu	37	14	23375447	23375447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23375447G>A	uc001whg.2	-	5	557	c.358C>T	c.(358-360)CGT>TGT	p.R120C	RBM23_uc001whh.2_Missense_Mutation_p.R104C|RBM23_uc001whi.2_Missense_Mutation_p.R104C|RBM23_uc010tne.1_5'UTR|RBM23_uc001whj.2_5'UTR|RBM23_uc001whk.1_Missense_Mutation_p.R120C	NM_001077351	NP_001070819	Q86U06	RBM23_HUMAN	RNA binding motif protein 23 isoform 1	120	Arg-rich.				mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.0128)		CGATCCTCACGACGATGGTCC	0.488													18	59					0	0	1	0	0
PRMT5	10419	broad.mit.edu	37	14	23395389	23395389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23395389G>A	uc001whm.1	-	7	821	c.730C>T	c.(730-732)CCT>TCT	p.P244S	PRMT5_uc001whl.1_Missense_Mutation_p.P227S|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.P138S|PRMT5_uc010tng.1_Missense_Mutation_p.P183S|PRMT5_uc010tnh.1_Missense_Mutation_p.P200S|PRMT5_uc001whn.1_Intron	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	244					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		GAAAGAACAGGAAATCCCTTC	0.478													22	86					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23862712	23862712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23862712C>T	uc001wjv.2	-	23	3011	c.2944G>A	c.(2944-2946)GAG>AAG	p.E982K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	982	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCCATCTCCTCTGTTAGGTTC	0.532													88	138					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23865993	23865993	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23865993C>T	uc001wjv.2	-	19	2269	c.2202G>A	c.(2200-2202)GAG>GAA	p.E734E		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	734	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGAACTGTCCCTCAGGGATGG	0.537													12	46					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23886827	23886827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23886827G>A	uc001wjx.2	-	31	4344	c.4238C>T	c.(4237-4239)TCG>TTG	p.S1413L		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1413	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTTCTCCAGCGAGGAGCACTT	0.617													37	47					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23897768	23897768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23897768C>T	uc001wjx.2	-	15	1625	c.1519G>A	c.(1519-1521)GAG>AAG	p.E507K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	507	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		AATGTCCACTCGATGCCCTCC	0.527													25	70					0	0	1	0	0
NGDN	25983	broad.mit.edu	37	14	23944952	23944952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:23944952C>T	uc001wjy.2	+	6	412	c.385C>T	c.(385-387)CGT>TGT	p.R129C	NGDN_uc001wjz.2_Missense_Mutation_p.R129C|NGDN_uc001wka.2_5'Flank	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	129	Necessary for interaction with EIF4E (By similarity).				regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		TGACCCACTTCGTTTTAAGCC	0.408													28	82					0	0	1	0	0
CPNE6	9362	broad.mit.edu	37	14	24546584	24546584	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24546584C>T	uc001wll.2	+	15	1620	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	CPNE6_uc010tnv.1_Silent_p.F562F|CPNE6_uc001wlm.2_Silent_p.F332F|CPNE6_uc001wln.2_Silent_p.F175F	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	507	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TCGTGCCCTTCCGAGACTTCA	0.617													37	43					0	0	1	0	0
PSME2	5721	broad.mit.edu	37	14	24613650	24613650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24613650G>A	uc001wmj.2	-	7	453	c.388C>T	c.(388-390)CCC>TCC	p.P130S	FAM158A_uc001wmi.2_5'Flank|PSME2_uc001wmk.2_Missense_Mutation_p.P53S|RNF31_uc001wml.1_5'Flank	NM_002818	NP_002809	Q9UL46	PSME2_HUMAN	proteasome activator subunit 2	130					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome activator complex					0				GBM - Glioblastoma multiforme(265;0.00839)		TCAATCTTGGGGATCAGGTGT	0.418													21	36					0	0	1	0	0
RNF31	55072	broad.mit.edu	37	14	24618631	24618631	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24618631C>T	uc001wmn.1	+	6	897	c.648C>T	c.(646-648)CCC>CCT	p.P216P	PSME2_uc001wmj.2_5'Flank|PSME2_uc001wmk.2_5'Flank|RNF31_uc001wml.1_Silent_p.P65P|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Silent_p.P31P|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	216	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		CTCCTGGTCCCTGCTTCCTCT	0.562													19	85					0	0	1	0	0
TM9SF1	10548	broad.mit.edu	37	14	24682688	24682688	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24682688G>A	uc010tob.1	-	1	670	c.36C>T	c.(34-36)GTC>GTT	p.V12V	CHMP4A_uc001wni.2_Silent_p.V29V|CHMP4A_uc010toc.1_RNA|CHMP4A_uc001wnj.2_Silent_p.V29V|MDP1_uc001wnk.1_3'UTR|CHMP4A_uc001wnm.1_3'UTR	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	Error:Variant_position_missing_in_O15321_after_alignment					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		GCGTCCTCCAGACTTCCGCCT	0.667													14	35					0	0	1	0	0
TGM1	7051	broad.mit.edu	37	14	24731284	24731284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24731284G>A	uc001wod.2	-	2	399	c.275C>T	c.(274-276)TCC>TTC	p.S92F	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	92	Membrane anchorage region.				cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	GCTGCCCCGGGATACAGGCCG	0.637													19	83					0	0	1	0	0
CIDEB	27141	broad.mit.edu	37	14	24775314	24775314	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24775314C>T	uc001won.2	-	4	490	c.366G>A	c.(364-366)CGG>CGA	p.R122R	CIDEB_uc001woo.2_Silent_p.R122R|CIDEB_uc001wop.2_Silent_p.R122R|LTB4R2_uc001woq.1_5'Flank	NM_014430	NP_055245	Q9UHD4	CIDEB_HUMAN	cell death-inducing DFFA-like effector b	122					apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis	cytosol					0				GBM - Glioblastoma multiforme(265;0.0181)		TGGGCCTCTCCCGTCCCAGGC	0.537													33	75					0	0	1	0	0
CMA1	1215	broad.mit.edu	37	14	24974865	24974865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:24974865C>T	uc001wpp.1	-	5	631	c.601G>A	c.(601-603)GGA>AGA	p.G201R	CMA1_uc010alx.1_Missense_Mutation_p.G90R	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	201	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		CCAGAGTCTCCCTGTAGGGGG	0.602													24	74					0	0	1	0	0
SCFD1	23256	broad.mit.edu	37	14	31169402	31169402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:31169402C>T	uc001wqm.1	+	16	1372	c.1348C>T	c.(1348-1350)CCA>TCA	p.P450S	SCFD1_uc001wqn.1_Missense_Mutation_p.P383S|SCFD1_uc010tpg.1_Missense_Mutation_p.P391S|SCFD1_uc010tph.1_Missense_Mutation_p.P265S|SCFD1_uc010amf.1_Missense_Mutation_p.P265S|SCFD1_uc010tpi.1_Missense_Mutation_p.P358S|SCFD1_uc010amd.1_Missense_Mutation_p.P282S|SCFD1_uc010ame.1_Missense_Mutation_p.P383S	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	450					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		AGCAGGAACTCCAGAAGATAA	0.343													23	80					0	0	1	0	0
HEATR5A	25938	broad.mit.edu	37	14	31774237	31774237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:31774237G>A	uc001wrf.3	-	26	4311	c.4234C>T	c.(4234-4236)CCT>TCT	p.P1412S	HEATR5A_uc010ami.2_Missense_Mutation_p.P1310S	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1699							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		GTCAATTTAGGGTTTAATTCT	0.443													51	113					0	0	1	0	0
ARHGAP5	394	broad.mit.edu	37	14	32562880	32562880	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:32562880C>A	uc001wrl.2	+	2	3244	c.3005C>A	c.(3004-3006)CCA>CAA	p.P1002Q	ARHGAP5_uc001wrm.2_Missense_Mutation_p.P1002Q|ARHGAP5_uc001wrn.2_Missense_Mutation_p.P1002Q|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1002					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		CAGTTGCTTCCAACACCTAGT	0.418													50	53					1.17673e-23	1.1923e-23	1	1	0
RALGAPA1	253959	broad.mit.edu	37	14	36133961	36133961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:36133961C>T	uc001wti.2	-	26	4088	c.3697G>A	c.(3697-3699)GAA>AAA	p.E1233K	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.E1233K|RALGAPA1_uc010tpv.1_Missense_Mutation_p.E1246K|RALGAPA1_uc010tpw.1_Missense_Mutation_p.E1280K	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1233					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						ACTTGTGCTTCTACTCTTGGT	0.348													10	27					0	0	1	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36191028	36191028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:36191028G>A	uc001wti.2	-	16	2523	c.2132C>T	c.(2131-2133)TCA>TTA	p.S711L	RALGAPA1_uc001wtj.2_Missense_Mutation_p.S711L|RALGAPA1_uc010tpv.1_Missense_Mutation_p.S711L|RALGAPA1_uc010tpw.1_Missense_Mutation_p.S711L|RALGAPA1_uc001wtk.1_Missense_Mutation_p.S562L	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	711					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						CTTGTCAACTGAAACTTTCTG	0.418													32	42					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	36840614	36840614	+	Translation_Start_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:36840614C>T	uc001wtp.2	+	1	245	c.-4C>T	c.(-6--2)GACGC>GATGC			NM_199286	NP_954980			stella																		TGTGTCAAGACGCCGATGGAC	0.483													7	17					0	0	1	0	0
SFTA3	253970	broad.mit.edu	37	14	36946243	36946243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:36946243C>T	uc001wtr.2	-	3	826	c.194G>A	c.(193-195)GGA>GAA	p.G65E	SFTA3_uc001wtq.2_RNA|SFTA3_uc001wts.2_RNA	NM_001101341	NP_001094811	P0C7M3	SFTA3_HUMAN	surfactant associated 3	65											0						ATGGACTGTTCCTGGACTTGG	0.517													73	75					0	0	1	0	0
SLC25A21	89874	broad.mit.edu	37	14	37180645	37180645	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:37180645C>A	uc001wtz.1	-	7	791	c.481G>T	c.(481-483)GAA>TAA	p.E161*		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	161	Solcar 2.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		CCCCAGCCTTCCTTCTTAATG	0.438													24	25					7.38237e-10	7.4295e-10	1	1	0
Unknown	0	broad.mit.edu	37	14	39304827	39304827	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:39304827C>T	uc001wun.2	-	3		c.3734G>A			uc001wuo.2_RNA|uc010amw.1_RNA					Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.																		CGTGTTCATTCCTTTTCAGAG	0.493													4	19					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	39304838	39304838	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:39304838G>A	uc001wun.2	-	3		c.3723C>T			uc001wuo.2_RNA|uc010amw.1_RNA					Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.																		CTTTTCAGAGGAAGAAACCCT	0.483													7	16					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39716361	39716361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:39716361G>A	uc001wux.2	+	4	777	c.583G>A	c.(583-585)GAC>AAC	p.D195N	MIA2_uc010amy.1_Missense_Mutation_p.D126N	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	195						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TGAATCAAAAGACTGGGAAGA	0.418													15	44					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42361005	42361005	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:42361005G>A	uc001wvm.2	+	4	3136	c.1938G>A	c.(1936-1938)AAG>AAA	p.K646K	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	646	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AGAAAAGAAAGACTGGCACAA	0.458										HNSCC(30;0.082)			9	21					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44975515	44975515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:44975515G>A	uc001wvn.2	-	1	985	c.676C>T	c.(676-678)CCC>TCC	p.P226S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	226						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		AGTACCGGGGGACCTTTTTTA	0.403													21	77					0	0	1	0	0
FAM179B	23116	broad.mit.edu	37	14	45513922	45513922	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:45513922C>T	uc001wvv.2	+	13	4212	c.4003C>T	c.(4003-4005)CAA>TAA	p.Q1335*	FAM179B_uc001wvw.2_Nonsense_Mutation_p.Q1335*|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1335							binding			skin(2)|upper_aerodigestive_tract(1)	3						GAGCATGGATCAAGAGCTAGA	0.343													12	39					0	0	1	0	0
MGAT2	4247	broad.mit.edu	37	14	50089303	50089303	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:50089303C>T	uc001wwr.2	+	1	1815	c.1317C>T	c.(1315-1317)CTC>CTT	p.L439L	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	439	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					ACCATGAACTCTGTAAAAGTT	0.368													10	50					0	0	1	0	0
SOS2	6655	broad.mit.edu	37	14	50625329	50625329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:50625329G>A	uc001wxs.3	-	11	1986	c.1888C>T	c.(1888-1890)CGT>TGT	p.R630C	SOS2_uc010tql.1_Missense_Mutation_p.R597C|SOS2_uc010tqm.1_RNA|SOS2_uc001wxt.2_Missense_Mutation_p.R318C	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	630	N-terminal Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					CAAAATGAACGATATGTGGTA	0.299													24	76					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52496382	52496382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:52496382G>A	uc001wzo.2	-	10	2518	c.2284C>T	c.(2284-2286)CCT>TCT	p.P762S	NID2_uc010tqs.1_Missense_Mutation_p.P762S|NID2_uc010tqt.1_Missense_Mutation_p.P762S|NID2_uc001wzp.2_Missense_Mutation_p.P762S	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	762	EGF-like 2.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					TCATAGCAAGGATTCCCCGGA	0.517													16	34					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52520482	52520482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:52520482G>A	uc001wzo.2	-	5	1478	c.1244C>T	c.(1243-1245)CCC>CTC	p.P415L	NID2_uc010tqs.1_Missense_Mutation_p.P415L|NID2_uc010tqt.1_Missense_Mutation_p.P415L|NID2_uc001wzp.2_Missense_Mutation_p.P415L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	415						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					TCCGTTTTCGGGGTACGGTGG	0.552													24	84					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52735294	52735294	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:52735294C>T	uc001wzq.2	+	1	864	c.762C>T	c.(760-762)TCC>TCT	p.S254S		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	254	Cytoplasmic (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	GGGAAGCGTCCCCTCAGCCCC	0.677													31	101					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52741452	52741452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:52741452C>T	uc001wzq.2	+	2	952	c.850C>T	c.(850-852)CGC>TGC	p.R284C		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	284	Extracellular (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	AAAACAGTATCGCGCTTACTA	0.398													4	16					0	0	1	0	0
PTGER2	5732	broad.mit.edu	37	14	52793975	52793975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:52793975G>A	uc001wzr.2	+	2	1131	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	294	Extracellular (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	TTCCCGAAAGGAAAAATGGGA	0.398													7	53					0	0	1	0	0
DDHD1	80821	broad.mit.edu	37	14	53522512	53522512	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:53522512T>C	uc001xai.2	-	10	2341	c.2111A>G	c.(2110-2112)AAC>AGC	p.N704S	DDHD1_uc001xaj.2_Missense_Mutation_p.N711S|DDHD1_uc001xah.2_Missense_Mutation_p.N704S|DDHD1_uc001xag.2_Missense_Mutation_p.N286S|DDHD1_uc001xak.1_Missense_Mutation_p.N100S	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	704	DDHD.				lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					TTTAGCTGGGTTGAGAAAGCT	0.428													31	111					0	0	1	0	0
OTX2	5015	broad.mit.edu	37	14	57268715	57268715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:57268715G>A	uc001xcp.2	-	3	779	c.608C>T	c.(607-609)TCA>TTA	p.S203L	OTX2_uc010aou.2_Missense_Mutation_p.S203L|OTX2_uc001xcq.2_Missense_Mutation_p.S211L	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	203					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					GGTCAAATATGATCCACAGTC	0.527													29	24					0	0	1	0	0
ARID4A	5926	broad.mit.edu	37	14	58813147	58813147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:58813147C>T	uc001xdp.2	+	13	1252	c.998C>T	c.(997-999)CCA>CTA	p.P333L	ARID4A_uc001xdo.2_Missense_Mutation_p.P333L|ARID4A_uc001xdq.2_Missense_Mutation_p.P333L|ARID4A_uc010apg.1_Missense_Mutation_p.P11L	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	333	ARID.				negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						ATCAACAAACCACCTGTTTTG	0.318													5	28					0	0	1	0	0
KIAA0586	9786	broad.mit.edu	37	14	58917345	58917345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:58917345C>T	uc001xdv.3	+	8	1283	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L	KIAA0586_uc010trr.1_Missense_Mutation_p.P378L|KIAA0586_uc001xdt.3_Missense_Mutation_p.P293L|KIAA0586_uc001xdu.3_Missense_Mutation_p.P322L|KIAA0586_uc010trs.1_Missense_Mutation_p.P252L|KIAA0586_uc010trt.1_Missense_Mutation_p.P197L|KIAA0586_uc010tru.1_Missense_Mutation_p.P197L	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	337										ovary(1)	1						CAGAAATCTCCTTTGGAGACA	0.323													13	24					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60193833	60193833	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:60193833G>A	uc001xen.1	-	3	1778	c.1569C>T	c.(1567-1569)CTC>CTT	p.L523L	RTN1_uc001xem.1_Silent_p.L103L	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	523					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		AGGGGTAGTCGAGGAAGGAAC	0.706													4	17					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60193865	60193865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:60193865G>A	uc001xen.1	-	3	1746	c.1537C>T	c.(1537-1539)CGG>TGG	p.R513W	RTN1_uc001xem.1_Missense_Mutation_p.R93W	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	513					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		AGGCCCCGCCGGCTTGGCGCA	0.726													4	14					0	0	1	0	0
C14orf39	317761	broad.mit.edu	37	14	60928079	60928080	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:60928079_60928080CC>TT	uc001xez.3	-	13	1219_1220	c.1109_1110GG>AA	c.(1108-1110)GGG>GAA	p.G370E	C14orf39_uc010apo.2_Missense_Mutation_p.G81E	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	370										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TACCTTTATCCCCTTTTTCCGA	0.287													8	17					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174724	63174724	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:63174724C>T	uc001xfx.2	-	11	2520	c.2469G>A	c.(2467-2469)GAG>GAA	p.E823E	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	823	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTTCCTTTTTCTCCTCATGGG	0.438													27	108					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63174948	63174948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:63174948C>T	uc001xfx.2	-	11	2296	c.2245G>A	c.(2245-2247)GGA>AGA	p.G749R	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	749	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACGCTGGTTCCGGTGATGGAG	0.537													30	45					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63175003	63175003	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:63175003C>T	uc001xfx.2	-	11	2241	c.2190G>A	c.(2188-2190)GAG>GAA	p.E730E	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	730	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GTTGGTTCCTCTCAGGGTCAC	0.557													54	62					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63417186	63417186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:63417186C>T	uc001xfx.2	-	7	1085	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	KCNH5_uc001xfy.2_Missense_Mutation_p.G345E|KCNH5_uc001xfz.1_Missense_Mutation_p.G287E|KCNH5_uc001xga.2_Missense_Mutation_p.G287E	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	345	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GACTGCTGCTCCATATTCTAG	0.507													16	61					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64473769	64473769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:64473769C>T	uc001xgm.2	+	31	4636	c.4406C>T	c.(4405-4407)TCA>TTA	p.S1469L	SYNE2_uc001xgl.2_Missense_Mutation_p.S1469L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1469	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGGAAAAAATCATTAATCAGA	0.343													19	80					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64520142	64520142	+	Nonsense_Mutation	SNP	C	T	T	rs80035540		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:64520142C>T	uc001xgm.2	+	48	9741	c.9511C>T	c.(9511-9513)CAA>TAA	p.Q3171*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.Q3171*|SYNE2_uc010apw.1_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	3171	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GATAAAATCTCAATTACAGCA	0.318													17	21					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65260143	65260143	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:65260143G>A	uc001xht.2	-	13	2292	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	SPTB_uc001xhr.2_Silent_p.F746F|SPTB_uc001xhs.2_Silent_p.F746F|SPTB_uc001xhu.2_Silent_p.F746F	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	746	Spectrin 5.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCTGGAACTGGAAAAAGTTCT	0.607													22	17					0	0	1	0	0
FUT8	2530	broad.mit.edu	37	14	66200043	66200043	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:66200043C>T	uc001xin.2	+	10	2551	c.1354C>T	c.(1354-1356)CTG>TTG	p.L452L	FUT8_uc001xio.2_Silent_p.L452L|FUT8_uc010tsp.1_Silent_p.L289L|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Silent_p.L452L|FUT8_uc001xiq.2_Silent_p.L323L|FUT8_uc001xis.2_Silent_p.L46L	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	452	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		TGGAGTGATCCTGGATATACA	0.383													20	92					0	0	1	0	0
TMEM229B	161145	broad.mit.edu	37	14	67940517	67940517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:67940517G>A	uc001xjk.2	-	3	534	c.124C>T	c.(124-126)CCT>TCT	p.P42S	TMEM229B_uc001xjj.1_RNA	NM_182526	NP_872332	Q8NBD8	T229B_HUMAN	transmembrane protein 229B	42	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						GTGACCCCAGGGAACTTCCAG	0.632													10	15					0	0	1	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68248109	68248109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:68248109G>A	uc001xka.2	-	22	4649	c.4510C>T	c.(4510-4512)CAA>TAA	p.Q1504*	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Nonsense_Mutation_p.Q1504*	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1504					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		AGTCCTTCTTGGACAGCCGTG	0.552													36	124					0	0	1	0	0
ACTN1	87	broad.mit.edu	37	14	69352141	69352141	+	Splice_Site	SNP	C	T	T	rs112578863		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:69352141C>T	uc001xkl.2	-	12	1695	c.1385_splice	c.e12+1	p.N462_splice	ACTN1_uc001xkk.2_Intron|ACTN1_uc010ttb.1_Splice_Site_p.N397_splice|ACTN1_uc001xkm.2_Splice_Site_p.N462_splice|ACTN1_uc001xkn.2_Splice_Site_p.N462_splice|ACTN1_uc010ttc.1_Intron|ACTN1_uc001xko.1_Splice_Site_p.N397_splice|ACTN1_uc010ttd.1_Splice_Site_p.N441_splice	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b						focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GGGCCACCTACTTGAGCTCCT	0.642													13	29					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70515731	70515731	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:70515731C>T	uc001xly.2	-	7	2914	c.2160G>A	c.(2158-2160)GGG>GGA	p.G720G	SLC8A3_uc001xlu.2_Silent_p.G77G|SLC8A3_uc001xlv.2_Silent_p.G91G|SLC8A3_uc001xlw.2_Silent_p.G717G|SLC8A3_uc001xlx.2_Silent_p.G718G|SLC8A3_uc001xlz.2_Silent_p.G714G|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Silent_p.G77G	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	720	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GCCTCTCCTCCCCGGATTCAT	0.527													10	29					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634264	70634264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:70634264C>T	uc001xly.2	-	2	1630	c.876G>A	c.(874-876)ATG>ATA	p.M292I	SLC8A3_uc001xlw.2_Missense_Mutation_p.M292I|SLC8A3_uc001xlx.2_Missense_Mutation_p.M292I|SLC8A3_uc001xlz.2_Missense_Mutation_p.M292I|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	292	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AATGGGAATTCATCATTTTCC	0.473													13	52					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634325	70634325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:70634325C>T	uc001xly.2	-	2	1569	c.815G>A	c.(814-816)GGA>GAA	p.G272E	SLC8A3_uc001xlw.2_Missense_Mutation_p.G272E|SLC8A3_uc001xlx.2_Missense_Mutation_p.G272E|SLC8A3_uc001xlz.2_Missense_Mutation_p.G272E|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	272	Calmodulin-binding (By similarity).|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TATGATAATTCCTCGGTGTTT	0.468													21	51					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634416	70634416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:70634416G>A	uc001xly.2	-	2	1478	c.724C>T	c.(724-726)CCA>TCA	p.P242S	SLC8A3_uc001xlw.2_Missense_Mutation_p.P242S|SLC8A3_uc001xlx.2_Missense_Mutation_p.P242S|SLC8A3_uc001xlz.2_Missense_Mutation_p.P242S|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	242	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ACACACACTGGAAAGAAGAAG	0.478													18	39					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199670	71199670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:71199670G>A	uc001xmm.2	-	11	2416	c.2416C>T	c.(2416-2418)CGG>TGG	p.R806W	MAP3K9_uc010ttk.1_Missense_Mutation_p.R534W|MAP3K9_uc001xmk.2_Missense_Mutation_p.R539W|MAP3K9_uc001xml.2_Missense_Mutation_p.R820W	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	806					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CTGGTGCTCCGACGAGGACGG	0.622													22	19					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71205035	71205035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:71205035C>T	uc001xmm.2	-	8	1771	c.1771G>A	c.(1771-1773)GCC>ACC	p.A591T	MAP3K9_uc010ttk.1_Missense_Mutation_p.A328T|MAP3K9_uc001xmk.2_Missense_Mutation_p.A333T|MAP3K9_uc001xml.2_Missense_Mutation_p.A591T	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	591					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TTCTTTGGGGCCCTCTTCTCC	0.443													30	68					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71522276	71522276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:71522276C>T	uc001xmo.2	+	25	5079	c.4633C>T	c.(4633-4635)CCA>TCA	p.P1545S	PCNX_uc010are.1_Missense_Mutation_p.P1434S|PCNX_uc010arf.1_Missense_Mutation_p.P405S	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1545						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TGATAGAAATCCAGGTAATAG	0.313													58	45					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72138208	72138208	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:72138208C>T	uc001xms.2	+	8	2976	c.2628C>T	c.(2626-2628)TGC>TGT	p.C876C	SIPA1L1_uc001xmt.2_Silent_p.C876C|SIPA1L1_uc001xmu.2_Silent_p.C876C|SIPA1L1_uc001xmv.2_Silent_p.C876C|SIPA1L1_uc010ttm.1_Silent_p.C351C	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	876					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		AACTAGACTGCCTTTTAGGGA	0.483													19	102					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72936715	72936715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:72936715G>A	uc001xna.3	+	8	983	c.460G>A	c.(460-462)GAA>AAA	p.E154K	RGS6_uc010ttn.1_Missense_Mutation_p.E154K|RGS6_uc001xmx.3_Missense_Mutation_p.E154K|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.E154K|RGS6_uc010ttp.1_Missense_Mutation_p.E85K|RGS6_uc001xmz.1_Missense_Mutation_p.E15K|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	154					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		TTCTCATTAGGAAAACTTAGC	0.393													24	28					0	0	1	0	0
ACOT1	641371	broad.mit.edu	37	14	74004356	74004356	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:74004356C>T	uc001xol.1	+	1	429	c.231C>T	c.(229-231)CCC>CCT	p.P77P	HEATR4_uc010tua.1_Intron|ACOT1_uc010tuc.1_Silent_p.P77P	NM_001037161	NP_001032238	Q86TX2	ACOT1_HUMAN	acyl-CoA thioesterase 1	77					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	cytosol	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(108;1.37e-45)|BRCA - Breast invasive adenocarcinoma(234;0.0033)		GGCTTGAGCCCATGGGGCTGC	0.716													6	28					0	0	1	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874374	74874375	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:74874374_74874375CC>TT	uc001xpx.2	-	4	828_829	c.580_581GG>AA	c.(580-582)GGG>AAG	p.G194K		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	194					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		GCGGAAGTCCCCTTTGGAGATG	0.663													44	58					0	0	1	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874637	74874637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:74874637G>A	uc001xpx.2	-	3	721	c.473C>T	c.(472-474)CCC>CTC	p.P158L		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	158					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		GTGGTCCCTGGGAGGCAGCGT	0.572													20	19					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74973893	74973894	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:74973893_74973894CC>TT	uc001xqa.2	-	26	4282_4283	c.3895_3896GG>AA	c.(3895-3897)GGA>AAA	p.G1299K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1299	EGF-like 14; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		AATGCAGTCTCCGTTCGGGGCC	0.55													42	36					0	0	1	0	0
FCF1	51077	broad.mit.edu	37	14	75200864	75200864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:75200864C>T	uc001xqh.2	+	7	590	c.539C>T	c.(538-540)TCT>TTT	p.S180F	FCF1_uc001xqf.1_Missense_Mutation_p.S165F|FCF1_uc001xqg.2_RNA|FCF1_uc001xqi.2_RNA	NM_015962	NP_057046	Q9Y324	FCF1_HUMAN	FCF1 small subunit	180					rRNA processing	nucleolus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0037)		ATGTACATTTCTAACCATAGG	0.363													9	29					0	0	1	0	0
FAM164C	79696	broad.mit.edu	37	14	75537901	75537901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:75537901G>A	uc001xri.2	+	2	798	c.625G>A	c.(625-627)GAG>AAG	p.E209K	FAM164C_uc001xrh.2_Missense_Mutation_p.E209K	NM_001042430	NP_001035895	Q53FD0	F164C_HUMAN	chromosome 14 open reading frame 140 isoform b	209										ovary(1)	1						TGACAGGACGGAGTGGGTGCA	0.527													27	136					0	0	1	0	0
NEK9	91754	broad.mit.edu	37	14	75567738	75567738	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:75567738G>A	uc001xrl.2	-	16	2113	c.1959C>T	c.(1957-1959)ATC>ATT	p.I653I	NEK9_uc001xrk.2_Silent_p.I153I	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	653	RCC1 5.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		AGGAGACCCTGATCACTTGCT	0.517													16	69					0	0	1	0	0
TMEM63C	57156	broad.mit.edu	37	14	77715665	77715665	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:77715665G>A	uc001xtf.2	+	21	2114	c.1902G>A	c.(1900-1902)ACG>ACA	p.T634T	TMEM63C_uc010asq.1_Silent_p.T634T	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	634						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		AGCACTTGACGGATCGCTATA	0.542													35	59					0	0	1	0	0
VIPAR	63894	broad.mit.edu	37	14	77896033	77896033	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:77896033G>A	uc001xtt.1	-	18	1595	c.1257C>T	c.(1255-1257)GCC>GCT	p.A419A	VIPAR_uc001xtu.1_Silent_p.A419A|VIPAR_uc010tvj.1_Silent_p.A370A|VIPAR_uc001xtv.1_Silent_p.A419A	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	419					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CCTGCACAGGGGCATTGTTCT	0.498													75	220					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79434659	79434659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:79434659C>T	uc001xun.2	+	11	2484	c.1993C>T	c.(1993-1995)CGG>TGG	p.R665W	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.R790W	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1038	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGCTCTTCATCGGAGCGGACA	0.527													24	39					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088141	86088141	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:86088141C>T	uc001xvr.2	+	2	1050	c.283C>T	c.(283-285)CTG>TTG	p.L95L	FLRT2_uc010atd.2_Silent_p.L95L	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	95	Extracellular (Potential).|LRR 2.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CACGGTCTACCTGTATGGCAA	0.478													23	94					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088162	86088162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:86088162G>A	uc001xvr.2	+	2	1071	c.304G>A	c.(304-306)GAA>AAA	p.E102K	FLRT2_uc010atd.2_Missense_Mutation_p.E102K	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	102	Extracellular (Potential).|LRR 2.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CCAACTGGACGAATTCCCCAT	0.468													27	81					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088739	86088739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:86088739G>A	uc001xvr.2	+	2	1648	c.881G>A	c.(880-882)GGG>GAG	p.G294E	FLRT2_uc010atd.2_Missense_Mutation_p.G294E	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	294	Extracellular (Potential).|LRR 10.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CTGACTCAAGGGGTTTTTGAT	0.448													69	199					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089314	86089314	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:86089314C>T	uc001xvr.2	+	2	2223	c.1456C>T	c.(1456-1458)CGA>TGA	p.R486*	FLRT2_uc010atd.2_Nonsense_Mutation_p.R486*	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	486	Fibronectin type-III.|Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CTTAGAGCCCCGATCCACCTA	0.522													25	89					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089701	86089701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:86089701G>A	uc001xvr.2	+	2	2610	c.1843G>A	c.(1843-1845)GAT>AAT	p.D615N	FLRT2_uc010atd.2_Missense_Mutation_p.D615N	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	615	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CTTAAATAACGATCAACTCCT	0.473													59	189					0	0	1	0	0
KCNK10	54207	broad.mit.edu	37	14	88652080	88652080	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:88652080G>A	uc001xwo.2	-	7	1873	c.1416C>T	c.(1414-1416)ATC>ATT	p.I472I	KCNK10_uc001xwm.2_Silent_p.I477I|KCNK10_uc001xwn.2_Silent_p.I477I	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	472	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGGTCTTGTAGATTTTCTGAA	0.502													55	63					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90754901	90754901	+	Missense_Mutation	SNP	G	A	A	rs146392222		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:90754901G>A	uc001xyi.1	-	11	2849	c.2818C>T	c.(2818-2820)CCA>TCA	p.P940S	C14orf102_uc010atp.1_Missense_Mutation_p.P445S|C14orf102_uc001xyj.1_Missense_Mutation_p.P709S|C14orf102_uc001xyk.1_Missense_Mutation_p.P132S	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	940							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GAGCCTTCTGGGAAAACAGAA	0.502													29	52					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90755409	90755409	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:90755409G>A	uc001xyi.1	-	11	2341	c.2310C>T	c.(2308-2310)CTC>CTT	p.L770L	C14orf102_uc010atp.1_Silent_p.L275L|C14orf102_uc001xyj.1_Silent_p.L539L|C14orf102_uc001xyk.1_5'UTR	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	770	HAT 3.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GCTCCTTAAGGAGATTCTTGG	0.433													121	247					0	0	1	0	0
C14orf102	55051	broad.mit.edu	37	14	90759093	90759093	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:90759093G>T	uc001xyi.1	-	9	1821	c.1790C>A	c.(1789-1791)CCT>CAT	p.P597H	C14orf102_uc010atp.1_Missense_Mutation_p.P102H|C14orf102_uc001xyj.1_Missense_Mutation_p.P366H	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	597							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GGTCTTATCAGGGCGCCAGGG	0.597													32	163					1.26612e-14	1.2778e-14	1	1	0
C14orf159	80017	broad.mit.edu	37	14	91681763	91681763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:91681763G>A	uc001xzb.2	+	15	2332	c.1564G>A	c.(1564-1566)GGA>AGA	p.G522R	C14orf159_uc001xyx.2_Missense_Mutation_p.G470R|C14orf159_uc001xyw.2_Missense_Mutation_p.G527R|C14orf159_uc001xzc.2_Missense_Mutation_p.G522R|C14orf159_uc001xza.2_Missense_Mutation_p.G527R|C14orf159_uc001xyv.2_Missense_Mutation_p.G487R|C14orf159_uc001xyz.2_Missense_Mutation_p.G398R|C14orf159_uc001xze.2_Missense_Mutation_p.G522R	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	522						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		TTCTAACTGGGGAGGCTATGC	0.522													43	57					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91738999	91738999	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:91738999C>T	uc010aty.2	-	30	6156	c.6057G>A	c.(6055-6057)CAG>CAA	p.Q2019Q	CCDC88C_uc001xzj.2_Silent_p.Q543Q|CCDC88C_uc001xzi.2_Silent_p.Q469Q	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	2019					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				ACCACACGGTCTGCGGATCCC	0.632													41	144					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755460	91755460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:91755460G>A	uc010aty.2	-	25	4529	c.4430C>T	c.(4429-4431)TCT>TTT	p.S1477F		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1477					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TTTCCCCACAGACCCGTTGTG	0.687													5	25					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92140529	92140529	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:92140529G>A	uc001xzs.1	-	12	1109	c.969C>T	c.(967-969)ACC>ACT	p.T323T		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	323					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CCTCACTTAGGGTTCTGTTTC	0.323													14	45					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92159533	92159533	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:92159533G>A	uc001xzs.1	-	9	908	c.768C>T	c.(766-768)ATC>ATT	p.I256I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	256	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AAGAGGTGAGGATAACTAAAA	0.328													38	65					0	0	1	0	0
TC2N	123036	broad.mit.edu	37	14	92251571	92251571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:92251571C>T	uc001xzu.3	-	11	1488	c.1297G>A	c.(1297-1299)GAA>AAA	p.E433K	TC2N_uc001xzt.3_Missense_Mutation_p.E433K|TC2N_uc010auc.2_Missense_Mutation_p.E369K|TC2N_uc001xzv.3_Missense_Mutation_p.E433K	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	433	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		AAAACAATTTCTTTTTCACTC	0.363													43	151					0	0	1	0	0
ITPK1	3705	broad.mit.edu	37	14	93483031	93483031	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:93483031T>C	uc001ybg.2	-	4	525	c.236A>G	c.(235-237)CAC>CGC	p.H79R	ITPK1_uc001ybe.2_Missense_Mutation_p.H79R|ITPK1_uc001ybf.2_5'UTR|ITPK1_uc001ybh.2_Missense_Mutation_p.H79R	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	79					blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		CTGGAACCTGTGCACCAGCTC	0.592													30	47					0	0	1	0	0
BTBD7	55727	broad.mit.edu	37	14	93708899	93708899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:93708899G>A	uc001ybo.2	-	11	3445	c.3119C>T	c.(3118-3120)CCT>CTT	p.P1040L	BTBD7_uc010aur.2_Missense_Mutation_p.P565L|BTBD7_uc010two.1_Missense_Mutation_p.P860L|BTBD7_uc001ybp.2_Missense_Mutation_p.P689L	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	1040										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GGCTGCCAAAGGAAAGTCTGA	0.517													44	140					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94048616	94048616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94048616G>A	uc001ybv.1	+	17	2281	c.2198G>A	c.(2197-2199)GGG>GAG	p.G733E	KIAA1409_uc001ybs.1_Missense_Mutation_p.G733E	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	910						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGCCCTGAAGGGGAGGAGGAG	0.567													14	39					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088532	94088532	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94088532G>A	uc001ybv.1	+	28	4571	c.4488G>A	c.(4486-4488)ACG>ACA	p.T1496T	KIAA1409_uc001ybs.1_Silent_p.T1474T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1651						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AAGAGGAGACGATGAACCAAG	0.552													15	79					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158136	94158136	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94158136C>T	uc001ybv.1	+	45	7049	c.6966C>T	c.(6964-6966)ATC>ATT	p.I2322I	KIAA1409_uc001ybs.1_Silent_p.I2300I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2477	Helical; (Potential).					integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ACGCGTTCATCTTTGCTCAGC	0.522													11	72					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94391689	94391689	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94391689G>A	uc001ybz.1	+	2	379	c.72G>A	c.(70-72)GGG>GGA	p.G24G	C14orf86_uc001yby.2_Intron|FAM181A_uc010aus.1_5'Flank|FAM181A_uc001yca.1_5'Flank	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	24											0						GAAGGCCTGGGGAGAAAAGGG	0.522													15	31					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94718122	94718122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94718122G>A	uc001ycs.1	+	16	1908	c.1754G>A	c.(1753-1755)CGA>CAA	p.R585Q		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	585						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AATAGACTTCGATTTTTGGAT	0.279													19	23					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94849304	94849304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94849304C>T	uc001ycx.3	-	2	532	c.271G>A	c.(271-273)GGG>AGG	p.G91R	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.G91R|SERPINA1_uc010aux.2_Missense_Mutation_p.G91R|SERPINA1_uc001ycy.3_Missense_Mutation_p.G91R|SERPINA1_uc010auy.2_Missense_Mutation_p.G91R|SERPINA1_uc001ycz.3_Missense_Mutation_p.G91R|SERPINA1_uc010auz.2_Missense_Mutation_p.G91R|SERPINA1_uc010ava.2_Missense_Mutation_p.G91R|SERPINA1_uc001ydb.3_Missense_Mutation_p.G91R|SERPINA1_uc010avb.2_Missense_Mutation_p.G91R|SERPINA1_uc001ydc.3_Missense_Mutation_p.G91R|SERPINA1_uc001yda.1_Missense_Mutation_p.G91R	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	91					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	GCCTTGGTCCCCAGGGAGAGC	0.552									Alpha-1-Antitrypsin_Deficiency				33	71					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909542	94909542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94909542G>A	uc001ydd.1	-	4	998	c.938C>T	c.(937-939)CCA>CTA	p.P313L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	313					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TGAAAACCTTGGCAAGTGCAA	0.453													24	34					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912739	94912739	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94912739C>T	uc001ydd.1	-	3	906	c.846G>A	c.(844-846)GGG>GGA	p.G282G		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	282					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GCTTCATTTTCCCCGGGTCAG	0.547													58	70					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94915035	94915035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94915035C>T	uc001ydd.1	-	2	137	c.77G>A	c.(76-78)GGA>GAA	p.G26E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	26					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		ACTTTTATCTCCATGGGCAAG	0.552													59	100					0	0	1	0	0
SERPINA12	145264	broad.mit.edu	37	14	94955960	94955960	+	Silent	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:94955960G>C	uc001ydj.2	-	5	1846	c.1050C>G	c.(1048-1050)GGC>GGG	p.G350G		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	350					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		GGCTTACCTCGCCCACTTTCA	0.517													7	26					0	0	1	0	0
DICER1	23405	broad.mit.edu	37	14	95562608	95562608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:95562608G>A	uc001ydw.2	-	24	4831	c.4649C>T	c.(4648-4650)ACT>ATT	p.T1550I	DICER1_uc010avh.1_Missense_Mutation_p.T448I|DICER1_uc001ydv.2_Missense_Mutation_p.T1540I|DICER1_uc001ydx.2_Missense_Mutation_p.T1550I|DICER1_uc001ydy.1_Missense_Mutation_p.T402I	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1550					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		ACACTGCTCAGTGTGCAAGTC	0.502			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				20	71					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95670554	95670554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:95670554C>T	uc001yef.2	-	9	1248	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	378						integral to membrane	actin binding				0				Epithelial(152;0.193)		TGCATGAACTCGGTGGAGCTG	0.542													25	58					0	0	1	0	0
C14orf49	161176	broad.mit.edu	37	14	95906269	95906269	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:95906269G>A	uc001yei.3	-	11	2070	c.2055C>T	c.(2053-2055)TCC>TCT	p.S685S	C14orf49_uc010avi.2_Silent_p.S685S	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	685	Spectrin 2.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CGGCCTCTTGGGACTCGGCAT	0.627													30	95					0	0	1	0	0
TCL1A	8115	broad.mit.edu	37	14	96180332	96180332	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:96180332G>A	uc001yfc.3	-	1	202	c.72C>T	c.(70-72)TTC>TTT	p.F24F	uc001yfd.1_5'Flank|TCL1A_uc001yfb.3_Silent_p.F24F	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	24					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CCAAATACACGAACTTCTCCC	0.657			T	TRA@	T-CLL								44	68					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96800166	96800166	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:96800166G>A	uc001yfi.2	-	8	1431	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	356										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TGCATGGGTCGATTTTTCCTA	0.348													22	56					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96813607	96813607	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:96813607G>A	uc001yfi.2	-	2	599	c.234C>T	c.(232-234)TCC>TCT	p.S78S		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	78										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GAACTGACAGGGAAATTGACT	0.458													9	17					0	0	1	0	0
C14orf129	51527	broad.mit.edu	37	14	96848752	96848752	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:96848752C>T	uc001yfj.3	+	3	313	c.168C>T	c.(166-168)AGC>AGT	p.S56S	C14orf129_uc001yfl.2_Silent_p.S56S	NM_016472	NP_057556	Q9P0R6	GSKIP_HUMAN	chromosome 14 open reading frame 129	56						cytoplasm	protein binding				0		Melanoma(154;0.226)		Epithelial(152;0.109)|COAD - Colon adenocarcinoma(157;0.205)		TCTCGAAAAGCCTGCGGTGTG	0.433													13	58					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96924441	96924441	+	Missense_Mutation	SNP	G	A	A	rs111905580		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:96924441G>A	uc001yfn.2	+	12	1293	c.1249G>A	c.(1249-1251)GAT>AAT	p.D417N		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	417	Adenylate kinase.|Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TGCCCCTAACGATGTagggga	0.388													19	38					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723978	99723978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:99723978C>T	uc001yga.2	-	2	524	c.257G>A	c.(256-258)GGT>GAT	p.G86D	BCL11B_uc001ygb.2_Missense_Mutation_p.G86D	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	86						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		ATAGCAGGCACCCAAGCTGCC	0.587			T	TLX3	T-ALL								8	61					0	0	1	0	0
CCNK	8812	broad.mit.edu	37	14	99961966	99961966	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:99961966G>A	uc001ygi.3	+	4	541	c.411G>A	c.(409-411)AAG>AAA	p.K137K	CCNK_uc001ygg.3_Silent_p.K137K	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	137					cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				ATGACCCAAAGGTAAGAATGA	0.383													33	137					0	0	1	0	0
EML1	2009	broad.mit.edu	37	14	100387194	100387194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:100387194C>T	uc001ygs.2	+	17	1958	c.1889C>T	c.(1888-1890)TCT>TTT	p.S630F	EML1_uc010tww.1_Missense_Mutation_p.S618F|EML1_uc001ygr.2_Missense_Mutation_p.S649F	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	630	WD 8.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GAACAGCTCTCTGTAATGCGA	0.303													47	52					0	0	1	0	0
YY1	7528	broad.mit.edu	37	14	100743846	100743846	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:100743846G>T	uc001ygy.1	+	5	1634	c.1154G>T	c.(1153-1155)TGC>TTC	p.C385F	uc001ygz.1_5'Flank	NM_003403	NP_003394	P25490	TYY1_HUMAN	YY1 transcription factor	385	C2H2-type 4.|Involved in masking transactivation domain.	Zinc 4.			cell differentiation|cellular response to UV|double-strand break repair via homologous recombination|negative regulation of transcription from RNA polymerase II promoter|response to UV-C|spermatogenesis	Ino80 complex|nuclear matrix|plasma membrane	four-way junction DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding				0		Melanoma(154;0.152)				CCCTATGTGTGCCCCTTCGAT	0.463													7	63					0.00198382	0.00198567	1	1	0
C14orf68	283600	broad.mit.edu	37	14	100793595	100793595	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:100793595G>C	uc001yhc.2	+	4	288	c.215G>C	c.(214-216)GGC>GCC	p.G72A	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	72	Solcar 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GTGTCTTTTGGCACCTACCGC	0.657													46	61					0	0	1	0	0
C14orf68	283600	broad.mit.edu	37	14	100793623	100793623	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:100793623C>T	uc001yhc.2	+	4	316	c.243C>T	c.(241-243)ATC>ATT	p.I81I	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	81					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				TGGCGCACATCTGCCGGCTCC	0.677													42	44					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101349370	101349370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:101349370C>T	uc010txj.1	-	1	1815	c.1756G>A	c.(1756-1758)GAT>AAT	p.D586N	uc001yig.3_RNA|MIR127_hsa-mir-127|MI0000472_RNA|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	586										pancreas(1)	1						TCAGAAAGATCATCGGATCCG	0.562													17	49					0	0	1	0	0
MIR1197	100302250	broad.mit.edu	37	14	101491915	101491915	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:101491915G>A	hsa-mir-1197|MI0006656	+			c.15G>A			uc001yjy.1_5'Flank|MIR323_hsa-mir-323|MI0000807_5'Flank|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank|MIR329-2_hsa-mir-329-2|MI0001726_5'Flank																	0						CCTGGTATTTGAAGATGCGGT	0.502													39	26					0	0	1	0	0
MIR487B	664616	broad.mit.edu	37	14	101512865	101512865	+	RNA	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:101512865T>C	hsa-mir-487b|MI0003530	+			c.74T>C			MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						CATCCACTTTTTCAGTAtcaa	0.244													6	36					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103404490	103404490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:103404490G>A	uc001ymi.1	-	36	5187	c.4955C>T	c.(4954-4956)ACT>ATT	p.T1652I		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1652					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CAGAGGCACAGTCACGCTAGG	0.532													42	67					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104571709	104571709	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:104571709G>A	uc001yoq.1	+	10	1155	c.1095G>A	c.(1093-1095)GTG>GTA	p.V365V	ASPG_uc001yoo.1_Silent_p.V393V|ASPG_uc001yop.1_Silent_p.V365V|ASPG_uc001yor.1_Silent_p.V365V	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	365					lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						CACCCTCGGTGGAAGAGCGCC	0.677													7	31					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104618511	104618511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:104618511G>A	uc001yos.3	+	3	448	c.448G>A	c.(448-450)GAG>AAG	p.E150K		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	150					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGCCAGCCATGAGGACCTTGA	0.711													5	6					0	0	1	0	0
ADSSL1	122622	broad.mit.edu	37	14	105207039	105207039	+	Missense_Mutation	SNP	C	T	T	rs144784529		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105207039C>T	uc001ypd.2	+	6	652	c.578C>T	c.(577-579)TCC>TTC	p.S193F	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.S236F|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	193					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	GATGAGTTTTCCTCCAGGTAC	0.597													38	47					0	0	1	0	0
PLD4	122618	broad.mit.edu	37	14	105394151	105394151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105394151C>T	uc001ypu.1	+	3	373	c.232C>T	c.(232-234)CCA>TCA	p.P78S	PLD4_uc010tyl.1_Missense_Mutation_p.P85S	NM_138790	NP_620145	Q96BZ4	PLD4_HUMAN	phospholipase D4	78					lipid catabolic process	integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity			central_nervous_system(1)|skin(1)	2		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.00067)|OV - Ovarian serous cystadenocarcinoma(23;0.00976)|Epithelial(46;0.0201)|GBM - Glioblastoma multiforme(11;0.116)		Choline(DB00122)	TGGCTCCAGCCCAGCTTGGGA	0.672													11	17					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408158	105408158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105408158C>T	uc010axc.1	-	7	13750	c.13630G>A	c.(13630-13632)GGG>AGG	p.G4544R	AHNAK2_uc001ypx.2_Missense_Mutation_p.G4444R	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4544						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCAGGTGCCCTTTGAGGCCG	0.632													40	170					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410526	105410526	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105410526C>T	uc010axc.1	-	7	11382	c.11262G>A	c.(11260-11262)AAG>AAA	p.K3754K	AHNAK2_uc001ypx.2_Silent_p.K3654K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3754						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGACTTCCGCCTTGGAGACTT	0.607													52	159					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415216	105415216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105415216G>A	uc010axc.1	-	7	6692	c.6572C>T	c.(6571-6573)TCC>TTC	p.S2191F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S2091F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2191						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCTGCATGGAGGGGAGACT	0.622													43	164					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418034	105418034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105418034G>A	uc010axc.1	-	7	3874	c.3754C>T	c.(3754-3756)CCT>TCT	p.P1252S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P1152S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1252						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TTCAAACTAGGCATCTGCACC	0.627													93	96					0	0	1	0	0
PACS2	23241	broad.mit.edu	37	14	105836195	105836195	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:105836195G>A	uc001yqt.2	+	8	934	c.759G>A	c.(757-759)CAG>CAA	p.Q253Q	PACS2_uc001yqs.2_Silent_p.Q178Q|PACS2_uc001yqv.2_Silent_p.Q253Q|PACS2_uc001yqu.2_Silent_p.Q253Q	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	253					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		ACTTCAAGCAGAAAGTGGTAG	0.672													3	13					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106173523	106173523	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106173523C>T	uc010tyt.1	-	3633		c.60375G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						AGGTGCCGTCCACCTCCGCCA	0.637													10	43					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106236114	106236114	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106236114G>A	uc010tyt.1	-	3616		c.57830C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CTGACCACACGGAACGTGCTG	0.597													59	227					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106311855	106311855	+	RNA	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106311855T>C	uc010tyt.1	-	3608		c.57068A>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.T67A|uc001ysk.1_Missense_Mutation_p.T67A|uc001ysl.1_Missense_Mutation_p.T67A|uc001ysm.1_Missense_Mutation_p.T10A|uc001ysn.1_Missense_Mutation_p.T10A|uc001yso.1_Missense_Mutation_p.T10A					Parts of antibodies, mostly variable regions.												0						TCAGGGAAGGTTCTCTGGGGC	0.577													18	55					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106330029	106330029	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106330029G>A	uc010tyt.1	-	3562		c.54194C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CTCACCTGAGGAGACGGTGAC	0.602													11	15					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106347451	106347451	+	RNA	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106347451T>G	uc010tyt.1	-	3211		c.50446A>C								Parts of antibodies, mostly variable regions.												0						CCTCCTGGTTTGTTTGGGGGC	0.597													32	43					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106405885	106405885	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106405885C>T	uc010tyt.1	-	2358		c.42179G>A								Parts of antibodies, mostly variable regions.												0						CTTCACCAGTCCTGGACCTGA	0.552													15	25					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106653536	106653536	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106653536C>T	uc010tyt.1	-	971		c.23427G>A								Parts of antibodies, mostly variable regions.												0						ACTCCAGCCCCTTTCCTGGAG	0.557													108	106					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106653563	106653563	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106653563C>T	uc010tyt.1	-	971		c.23400G>A								Parts of antibodies, mostly variable regions.												0						GGACCCAGTTCATGTCACTGT	0.582													36	159					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725374	106725374	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106725374G>A	uc010tyt.1	-	588		c.18173C>T								Parts of antibodies, mostly variable regions.												0						CCCTTCCCTGGAGCCTGGCGG	0.592													29	208					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106733271	106733271	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106733271C>T	uc010tyt.1	-	547		c.17465G>A								Parts of antibodies, mostly variable regions.												0						GATTGTTTCACCATCTTCAGG	0.517													53	162					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106744130	106744130	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106744130C>T	uc010tyt.1	-	502		c.16796G>A								Parts of antibodies, mostly variable regions.												0						ATAGCTGTTCCTTGTGACATC	0.517													9	23					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106757824	106757824	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106757824G>A	uc010tyt.1	-	472		c.16241C>T								Parts of antibodies, mostly variable regions.												0						CCTTCCCTGGGGGCTGACGGA	0.547													10	61					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106790962	106790962	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106790962G>A	uc010tyt.1	-	386		c.14656C>T								Parts of antibodies, mostly variable regions.												0						TTCCTGCAGGGAGGTTTGTGT	0.582													79	351					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791144	106791144	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106791144G>A	uc010tyt.1	-	386		c.14474C>T								Parts of antibodies, mostly variable regions.												0						TCCATCATATGATATAACTGC	0.507													82	359					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106829928	106829928	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106829928G>A	uc010tyt.1	-	323		c.12577C>T			uc001ysx.1_Intron					Parts of antibodies, mostly variable regions.												0						TGAGCCCTGGGATCAGAGGCA	0.562													5	33					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106866632	106866632	+	RNA	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106866632C>A	uc010tyt.1	-	281		c.11599G>T								Parts of antibodies, mostly variable regions.												0						AGAGGCTGCACAGGAGAGTCT	0.592													25	133					3.28513e-13	3.31357e-13	1	1	0
ADAM6	8755	broad.mit.edu	37	14	106967482	106967482	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:106967482C>T	uc010tyt.1	-	201		c.8959G>A								Parts of antibodies, mostly variable regions.												0						AGGTCCAGTCCATGGTGAAGA	0.498													41	33					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107083417	107083417	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:107083417C>T	uc010tyt.1	-	113		c.5376G>A								Parts of antibodies, mostly variable regions.												0						CACTCCAGTCCCTTCCCTGGG	0.547													53	79					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107170059	107170059	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:107170059C>T	uc010tyt.1	-	39		c.2728G>A								Parts of antibodies, mostly variable regions.												0						TTTGCTGTACCAAAGATAGGG	0.557													24	145					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107170178	107170178	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:107170178G>A	uc010tyt.1	-	39		c.2609C>T								Parts of antibodies, mostly variable regions.												0						CTTCACCGAGGACCCAGGCTT	0.572													14	103					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107183621	107183621	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:107183621C>T	uc010tyt.1	-	29		c.1936G>A								Parts of antibodies, mostly variable regions.												0						GAAGGTGAATCCAGAGGCTGC	0.577													4	108					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107219103	107219103	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr14:107219103G>A	uc010tyt.1	-	11		c.712C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.498													56	82					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937874	21937874	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:21937874G>A	uc010tzj.1	-	1		c.2866C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AAGCCAACATGGATGGTGTGT	0.408													59	346					0	0	1	0	0
NF1P1	440225	broad.mit.edu	37	15	22145389	22145389	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22145389G>A	uc010tzs.1	-	2		c.294C>T								Human NF1-related locus DNA in A9 mouse DNA background.												0						TGAGAACAAGGAACCACACTG	0.348													7	27					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22368644	22368644	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22368644C>T	uc010tzu.1	+	1	69	c.69C>T	c.(67-69)GTC>GTT	p.V23V	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTCCAGAGGTCCAACTAGTCC	0.378													25	274					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382615	22382615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22382615C>T	uc001yuc.1	+	7	1124	c.143C>T	c.(142-144)ACC>ATC	p.T48I	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.T48I	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATTATTTTCACCATAAGGTCA	0.458													7	197					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22382666	22382666	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22382666A>G	uc001yuc.1	+	7	1175	c.194A>G	c.(193-195)AAC>AGC	p.N65S	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.N65S	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTTCTGGGCAACTTGGCCTTC	0.463													15	207					0	0	1	0	0
OR4N4	283694	broad.mit.edu	37	15	22383097	22383097	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22383097C>T	uc001yuc.1	+	7	1606	c.625C>T	c.(625-627)CTG>TTG	p.L209L	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.L209L	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GATGACACTCCTGTGCTTTCT	0.527													18	74					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22440658	22440658	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22440658C>T	uc001yug.2	-	1	208	c.189G>A	c.(187-189)AGG>AGA	p.R63R						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGGAGAAATTCCTCACGTCCA	0.537													7	36					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22473054	22473054	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22473054G>A	uc001yuj.1	-	2		c.217C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CTCCCACTATGATAGATTTCC	0.562													20	311					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22861907	22861907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22861907G>A	uc001yur.3	+	14	2057	c.1927G>A	c.(1927-1929)GAT>AAT	p.D643N	TUBGCP5_uc001yuq.2_Missense_Mutation_p.D643N|TUBGCP5_uc010axz.1_Missense_Mutation_p.D230N	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	643					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TGATGTTCATGATCCACTGCT	0.423													18	73					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22993144	22993144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:22993144G>A	uc001yus.2	+	26	3135	c.3031G>A	c.(3031-3033)GAG>AAG	p.E1011K	CYFIP1_uc001yut.2_Missense_Mutation_p.E1011K|CYFIP1_uc010aya.1_Missense_Mutation_p.E1039K|CYFIP1_uc001yuu.2_Missense_Mutation_p.E580K|CYFIP1_uc001yuv.2_Missense_Mutation_p.E205K	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	1011					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CCTGCTCATCGAGCAGAGCCT	0.502													41	36					0	0	1	0	0
NDN	4692	broad.mit.edu	37	15	23931842	23931842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:23931842C>T	uc001ywk.2	-	1	609	c.523G>A	c.(523-525)GAG>AAG	p.E175K		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	175	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		CTGTCCAGCTCCTCGGGCTCC	0.652									Prader-Willi_syndrome				12	19					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921237	24921237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24921237C>T	uc001ywo.2	+	1	697	c.223C>T	c.(223-225)CCT>TCT	p.P75S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	75					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GTGTCCTCTCCCTCGGGCTGC	0.711													13	43					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921327	24921327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24921327C>T	uc001ywo.2	+	1	787	c.313C>T	c.(313-315)CCC>TCC	p.P105S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	105					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCTCGGAACCCCCCGAGGTT	0.677													9	42					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921892	24921892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24921892C>T	uc001ywo.2	+	1	1352	c.878C>T	c.(877-879)CCG>CTG	p.P293L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	293	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTAGGCTTGCCGATTCCGCTG	0.622													16	75					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921945	24921945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24921945C>T	uc001ywo.2	+	1	1405	c.931C>T	c.(931-933)CCT>TCT	p.P311S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	311	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTTCTGTATTCCTCCAAGGAG	0.577													33	53					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922658	24922658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24922658G>A	uc001ywo.2	+	1	2118	c.1644G>A	c.(1642-1644)ATG>ATA	p.M548I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	548					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCAAGCCTATGAATTCCACGT	0.493													56	122					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923640	24923640	+	Missense_Mutation	SNP	C	T	T	rs146008809		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24923640C>T	uc001ywo.2	+	1	3100	c.2626C>T	c.(2626-2628)CCT>TCT	p.P876S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	876					cell differentiation|multicellular organismal development|spermatogenesis			p.P876S(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CACCAGTTTTCCTGCACAGGC	0.507													57	61					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923695	24923695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:24923695G>A	uc001ywo.2	+	1	3155	c.2681G>A	c.(2680-2682)GGA>GAA	p.G894E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	894					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTAAATACAGGATCCATCTCT	0.507													94	90					0	0	1	0	0
PAR4	347745	broad.mit.edu	37	15	25451216	25451216	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:25451216C>T	uc001yzk.1	+	10		c.1434C>T			PAR4_uc010ayo.1_Intron|SNORD115-20_uc001yzq.1_5'Flank					Homo sapiens clone Rt-13I SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						GACCCATCTTCCAGCTATCTC	0.622													3	9					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28447509	28447509	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:28447509A>T	uc001zbj.2	-	46	7570	c.7464T>A	c.(7462-7464)AAT>AAA	p.N2488K	HERC2_uc001zbk.1_Missense_Mutation_p.N23K	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2488					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGCTGGATGCATTCCCGGAAG	0.557													29	26					0	0	1	0	0
KLF13	51621	broad.mit.edu	37	15	31664399	31664399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:31664399G>A	uc001zfo.2	+	2	1097	c.764G>A	c.(763-765)GGA>GAA	p.G255E		NM_015995	NP_057079	Q9Y2Y9	KLF13_HUMAN	Kruppel-like factor 13	255					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding				0		all_lung(180;3.71e-11)		all cancers(64;1.11e-18)|Epithelial(43;1.73e-14)|GBM - Glioblastoma multiforme(186;0.00016)|Colorectal(1;0.00158)|BRCA - Breast invasive adenocarcinoma(123;0.00255)|COAD - Colon adenocarcinoma(236;0.0446)|READ - Rectum adenocarcinoma(1;0.13)|Lung(196;0.171)		TTCCACCCGGGAATGCTGCAG	0.711													14	22					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33941313	33941313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:33941313C>T	uc001zhi.2	+	31	4089	c.4019C>T	c.(4018-4020)CCA>CTA	p.P1340L	RYR3_uc010bar.2_Missense_Mutation_p.P1340L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1340	4 X approximate repeats.|B30.2/SPRY 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGACAGGATCCATCCTGTGTC	0.532													114	81					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33954667	33954667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:33954667G>A	uc001zhi.2	+	35	5006	c.4936G>A	c.(4936-4938)GAG>AAG	p.E1646K	RYR3_uc010bar.2_Missense_Mutation_p.E1646K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1646	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTTCCCGGACGAGTCCAAGAG	0.567													8	46					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33991977	33991977	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:33991977C>T	uc001zhi.2	+	41	6392	c.6322C>T	c.(6322-6324)CAG>TAG	p.Q2108*	RYR3_uc010bar.2_Nonsense_Mutation_p.Q2108*	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2108	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCGGCAAAATCAGAAGGCCAT	0.448													21	16					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34042387	34042387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34042387G>A	uc001zhi.2	+	57	8369	c.8299G>A	c.(8299-8301)GTA>ATA	p.V2767I	RYR3_uc010bar.2_Missense_Mutation_p.V2767I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2767	4.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCCTCTTCTGGTACCATATGA	0.522													5	17					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34060901	34060901	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34060901C>T	uc001zhi.2	+	61	8818	c.8748C>T	c.(8746-8748)TCC>TCT	p.S2916S	RYR3_uc010bar.2_Silent_p.S2916S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2916	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACAGAATTTCCCTCTTTGGTA	0.448													14	118					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34077984	34077984	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34077984C>T	uc001zhi.2	+	66	9460	c.9390C>T	c.(9388-9390)GTC>GTT	p.V3130V	RYR3_uc010bar.2_Silent_p.V3130V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3130					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGCCCCATGTCATCGAGGTGA	0.587													52	135					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34150116	34150116	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34150116G>A	uc001zhi.2	+	99	14212	c.14142_splice	c.e99+1	p.T4714_splice	RYR3_uc010bar.2_Splice_Site_p.T4709_splice	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3						cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CATGATGACGGTGAGAGCCCA	0.582													8	23					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34647767	34647767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34647767G>A	uc001zif.2	+	7	1629	c.1474G>A	c.(1474-1476)GAC>AAC	p.D492N	C15orf55_uc010ucc.1_Missense_Mutation_p.D520N|C15orf55_uc010ucd.1_Missense_Mutation_p.D510N	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	492						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CGCTCAGTTGGACTCAAGTCC	0.567			T	BRD3|BRD4	lethal midline carcinoma								50	56					0	0	1	0	0
GOLGA8A	23015	broad.mit.edu	37	15	34673710	34673710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:34673710G>A	uc001zii.2	-	16	1823	c.1714C>T	c.(1714-1716)CTT>TTT	p.L572F	GOLGA8A_uc001zih.2_Missense_Mutation_p.L428F|uc001zil.2_5'Flank	NM_181077	NP_851422	A7E2F4	GOG8A_HUMAN	golgi autoantigen, golgin subfamily a, 8A	600	Golgi-targeting domain (By similarity).					Golgi cisterna membrane					0		all_lung(180;2.78e-08)		all cancers(64;8.27e-19)|GBM - Glioblastoma multiforme(113;6.98e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		ATCTCACCAAGGAGCTGCACG	0.592													19	53					0	0	1	0	0
GJD2	57369	broad.mit.edu	37	15	35045159	35045159	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:35045159C>T	uc001zis.1	-	2	486	c.486G>A	c.(484-486)AAG>AAA	p.K162K	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	162	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		GCTCTGTCTCCTTACTGGTGT	0.507													56	188					0	0	1	0	0
LOC723972	723972	broad.mit.edu	37	15	35530214	35530214	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:35530214G>A	uc001ziy.2	+	1		c.688G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						AGAAGAAAGGGGTCAGAAGCG	0.328													10	25					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38800089	38800089	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:38800089C>T	uc001zke.3	-	9	1258	c.1080G>A	c.(1078-1080)AAG>AAA	p.K360K	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Silent_p.K222K|RASGRP1_uc010bbg.2_Silent_p.K222K|RASGRP1_uc001zkd.3_Silent_p.K360K	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	360	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		AGATGAGGTCCTTGAGATGCA	0.507													5	21					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39875835	39875835	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:39875835G>A	uc001zkh.2	+	4	824	c.645G>A	c.(643-645)GTG>GTA	p.V215V		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	215	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TGCAGAATGTGAGGTTTGTCT	0.532											OREG0023051	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	104					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39886529	39886529	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:39886529C>T	uc001zkh.2	+	21	3572	c.3393C>T	c.(3391-3393)ATC>ATT	p.I1131I	THBS1_uc010bbi.2_Silent_p.I603I	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	1131	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GGAAGAAAATCATGGCTGACT	0.393													27	44					0	0	1	0	0
BUB1B	701	broad.mit.edu	37	15	40494625	40494625	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:40494625C>T	uc001zkx.3	+	13	1799	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	BUB1B_uc010ucl.1_Silent_p.S397S	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	529					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TACCTTTCTCCATTTTTGATG	0.284			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				17	24					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40661288	40661289	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:40661288_40661289CC>TT	uc001zlk.1	+	8	3064_3065	c.2975_2976CC>TT	c.(2974-2976)TCC>TTT	p.S992F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	992	Helical; (Potential).				smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		AGCCTATTCTCCGTGGCAGCTG	0.624													19	61					0	0	1	0	0
C15orf57	90416	broad.mit.edu	37	15	40855196	40855196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:40855196C>T	uc001zmc.1	-	2	109	c.19G>A	c.(19-21)GCT>ACT	p.A7T	C15orf57_uc001zly.2_Missense_Mutation_p.A5T|C15orf57_uc001zma.1_Missense_Mutation_p.A16T|C15orf57_uc001zmb.1_Missense_Mutation_p.A7T|C15orf57_uc010bbr.2_Missense_Mutation_p.A5T	NM_001080792	NP_001074261	Q9BV29	CO057_HUMAN	coiled-coil domain containing 32 isoform a	7										ovary(1)	1						GTAGAGTCAGCGCTCTCAAAC	0.388													44	142					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41820156	41820156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:41820156G>A	uc001zod.2	-	11	1454	c.1330C>T	c.(1330-1332)CTC>TTC	p.L444F		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	444						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		AGTAGGAAGAGGAAACCAGCA	0.577													4	22					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42000019	42000019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42000019C>T	uc001zog.1	+	6	2373	c.2282C>T	c.(2281-2283)CCT>CTT	p.P761L	MGA_uc010ucy.1_Missense_Mutation_p.P761L|MGA_uc010ucz.1_Missense_Mutation_p.P761L	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	761						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ACTAGCTTTCCTTTTTGGAAC	0.378													19	24					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42034999	42034999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42034999C>T	uc010ucy.1	+	15	5022	c.4841C>T	c.(4840-4842)CCT>CTT	p.P1614L	MGA_uc010ucz.1_Intron|MGA_uc010uda.1_Missense_Mutation_p.P230L	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1614	Thr-rich.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GCTGTGACACCTATGACTGCT	0.463													14	77					0	0	1	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42132776	42132776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42132776G>A	uc010bco.2	+	3	238	c.137G>A	c.(136-138)AGG>AAG	p.R46K	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.R277K|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.R277K|JMJD7-PLA2G4B_uc001zoq.3_5'UTR|JMJD7-PLA2G4B_uc001zor.1_5'Flank	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	46	C2.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						TGCAGCCACAGGCTCCAGACA	0.617													37	48					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42146303	42146303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42146303C>T	uc001zos.2	-	57	9947	c.9614G>A	c.(9613-9615)GGA>GAA	p.G3205E		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3240	Spectrin 29.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCTGTGGCCTCCGTCCTCCCC	0.652													3	8					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42287590	42287590	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42287590G>A	uc001zow.1	-	11	1128	c.1128C>T	c.(1126-1128)GCC>GCT	p.A376A	PLA2G4E_uc010udc.1_5'UTR|PLA2G4E_uc001zov.1_Silent_p.A29A	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	393	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		TGATGTAGCTGGCACAGTCCA	0.602													15	20					0	0	1	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42371884	42371884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42371884C>T	uc001zox.2	-	13	1263	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	390	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		GCCAGGTGCTCCCGGGCGTAT	0.652													28	35					0	0	1	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42379548	42379548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42379548G>A	uc001zox.2	-	3	300	c.205C>T	c.(205-207)CAT>TAT	p.H69Y		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	69	C2.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CACACAGGATGACTGGTGTCG	0.567													84	106					0	0	1	0	0
CAPN3	825	broad.mit.edu	37	15	42703483	42703483	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:42703483A>G	uc001zpn.1	+	23	2687	c.2381_splice	c.e23-2	p.R794_splice	CAPN3_uc001zpk.1_Splice_Site_p.R561_splice|CAPN3_uc001zpl.1_Splice_Site_p.R701_splice|CAPN3_uc010udf.1_Splice_Site_p.R707_splice|CAPN3_uc010udg.1_Splice_Site_p.R659_splice|CAPN3_uc001zpo.1_Splice_Site_p.R788_splice|CAPN3_uc001zpp.1_Splice_Site_p.R702_splice|CAPN3_uc001zpq.1_Splice_Site_p.R282_splice|CAPN3_uc010bcv.1_Splice_Site_p.R129_splice|CAPN3_uc001zpr.1_Splice_Site_p.R129_splice|CAPN3_uc001zps.1_Splice_Site_p.R129_splice|CAPN3_uc001zpt.1_Splice_Site_p.R129_splice	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a						muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		ATTCTTTCACAGGAGCTTTTC	0.502													17	87					0	0	1	0	0
UBR1	197131	broad.mit.edu	37	15	43351289	43351289	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43351289A>G	uc001zqq.2	-	9	1153	c.1087T>C	c.(1087-1089)TAT>CAT	p.Y363H	UBR1_uc010udk.1_Missense_Mutation_p.Y363H	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	363					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TTACCTTTATAAAGCTTTGCA	0.378													20	21					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43494147	43494147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43494147G>A	uc001zra.3	-	12	2108	c.1808C>T	c.(1807-1809)CCC>CTC	p.P603L	EPB42_uc001zqz.3_Missense_Mutation_p.P270L|EPB42_uc010bde.2_Silent_p.T394T|EPB42_uc001zrb.3_Missense_Mutation_p.P633L|EPB42_uc010udm.1_Missense_Mutation_p.P525L	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	603					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GGCTGTGAGGGGTTGATACTG	0.577													20	60					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43585714	43585714	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43585714G>A	uc001zrf.1	-	2	131	c.126C>T	c.(124-126)TAC>TAT	p.Y42Y		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	42					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	TCAGCCGGAGGTAGAAGGGCT	0.622													73	108					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43714177	43714177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43714177G>A	uc001zrs.2	-	19	4109	c.3961C>T	c.(3961-3963)CTC>TTC	p.L1321F	TP53BP1_uc010udp.1_Missense_Mutation_p.L1321F|TP53BP1_uc001zrq.3_Missense_Mutation_p.L1326F|TP53BP1_uc001zrr.3_Missense_Mutation_p.L1326F|TP53BP1_uc010udq.1_Missense_Mutation_p.L1326F	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1321					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		ATAGCTGAGAGACTTGTCCCA	0.572								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					15	89					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43813932	43813932	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43813932C>A	uc001zrt.2	+	4	728	c.261C>A	c.(259-261)CTC>CTA	p.L87L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	87						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CGGTGCTACTCACACACATTG	0.542													44	61					9.84934e-19	9.96274e-19	1	1	0
MAP1A	4130	broad.mit.edu	37	15	43815199	43815199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43815199G>A	uc001zrt.2	+	4	1995	c.1528G>A	c.(1528-1530)GGA>AGA	p.G510R		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	510	9 X 3 AA repeats of K-K-[DE].					cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGCCCAGAAGGGAACTGTACC	0.567													17	85					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43817595	43817595	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43817595G>A	uc001zrt.2	+	4	4391	c.3924G>A	c.(3922-3924)GCG>GCA	p.A1308A		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1308				KYLPGAITSPD -> EVLTWGDHQALN (in Ref. 4; AAD00355).		cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TACCTGGGGCGATCACAAGCC	0.507													48	45					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43821160	43821160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43821160G>A	uc001zrt.2	+	4	7956	c.7489G>A	c.(7489-7491)GAG>AAG	p.E2497K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2497						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TGTGACTGATGAGACACCCCC	0.617													47	69					0	0	1	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827033	43827033	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43827033G>A	uc001zrw.2	-	31	4324	c.4141C>T	c.(4141-4143)CAG>TAG	p.Q1381*	PPIP5K1_uc001zrx.1_Nonsense_Mutation_p.Q1354*|PPIP5K1_uc001zru.2_Nonsense_Mutation_p.Q1356*|PPIP5K1_uc001zry.3_Nonsense_Mutation_p.Q1356*|PPIP5K1_uc001zrv.2_Nonsense_Mutation_p.Q1142*	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1381					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						TGGTATGGCTGGATGACCTCC	0.527													46	81					0	0	1	0	0
CATSPER2	117155	broad.mit.edu	37	15	43939270	43939270	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:43939270C>T	uc001zsh.2	-	4	581	c.366G>A	c.(364-366)ACG>ACA	p.T122T	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.T122T|CATSPER2_uc001zsj.2_Silent_p.T122T|CATSPER2_uc001zsk.2_Silent_p.T122T	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	122	Helical; Name=Segment S1; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TCAATATGATCGTATTCAAAA	0.294													36	41					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45392024	45392024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45392024C>T	uc010bea.2	-	25	3454	c.3251G>A	c.(3250-3252)CGA>CAA	p.R1084Q	DUOX2_uc001zun.2_Missense_Mutation_p.R1084Q	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1084	Interaction with TXNDC11 (By similarity).|Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGCCGTGCCTCGTGACAGGAT	0.567													17	48					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45394076	45394076	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45394076C>T	uc010bea.2	-	21	2969	c.2766G>A	c.(2764-2766)GAG>GAA	p.E922E	DUOX2_uc001zun.2_Silent_p.E922E	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	922	EF-hand 3.|Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		AGTGAAAATCCTCCCATGTCA	0.572													24	48					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45401769	45401769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45401769G>A	uc010bea.2	-	11	1390	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	DUOX2_uc001zun.2_Missense_Mutation_p.S396F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	396	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGAAATCTGGGAGGCCATTCC	0.522													13	133					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45439720	45439720	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45439720G>A	uc001zus.1	+	20	2758	c.2412G>A	c.(2410-2412)AGG>AGA	p.R804R	DUOX1_uc001zut.1_Silent_p.R804R|DUOX1_uc010bee.1_Silent_p.R184R|DUOX1_uc001zuu.2_5'Flank	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	804	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		AGCTGAGCAGGGCCGAGTTTG	0.627													13	19					0	0	1	0	0
SHF	90525	broad.mit.edu	37	15	45464451	45464451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45464451G>A	uc001zuy.2	-	6	1354	c.859C>T	c.(859-861)CCC>TCC	p.P287S	SHF_uc010uen.1_Missense_Mutation_p.P103S|SHF_uc010ueo.1_Missense_Mutation_p.P103S|SHF_uc010uep.1_Missense_Mutation_p.P103S|SHF_uc010ueq.1_Missense_Mutation_p.P103S|SHF_uc010uer.1_Intron|SHF_uc010ues.1_Missense_Mutation_p.P150S|SHF_uc010uet.1_Missense_Mutation_p.P103S|SHF_uc010ueu.1_Missense_Mutation_p.P150S	NM_138356	NP_612365	Q7M4L6	SHF_HUMAN	Src homology 2 domain containing F	287										ovary(1)	1		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		GAGAGTCGGGGAGGTAGCCGC	0.602													27	46					0	0	1	0	0
SLC30A4	7782	broad.mit.edu	37	15	45781181	45781181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:45781181G>A	uc001zvj.2	-	5	1064	c.752C>T	c.(751-753)TCA>TTA	p.S251L		NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	251	Cytoplasmic (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		AGGGGAATTTGAAGGCAGGGA	0.448													20	43					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48703270	48703270	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:48703270G>A	uc001zwx.1	-	66	8861	c.8533C>T	c.(8533-8535)CTA>TTA	p.L2845L	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2845					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTGTCTTCTAGTTGGTTAAGT	0.388													41	50					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48760186	48760186	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:48760186G>A	uc001zwx.1	-	38	5024	c.4696C>T	c.(4696-4698)CTG>TTG	p.L1566L	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1566	TB 6.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCTTTACCCAGAGAACAGCAG	0.443													14	74					0	0	1	0	0
C15orf33	196951	broad.mit.edu	37	15	49860536	49860536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:49860536C>T	uc001zxl.2	-	9	947	c.653G>A	c.(652-654)AGA>AAA	p.R218K	C15orf33_uc001zxm.2_Intron	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	218										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TTGGTTTTCTCTGTCAGGCTT	0.313													14	25					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50540510	50540510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:50540510G>A	uc001zxz.2	-	10	1178	c.1072C>T	c.(1072-1074)CGC>TGC	p.R358C	HDC_uc001zxy.2_Missense_Mutation_p.R101C|HDC_uc010uff.1_Intron	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	358					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TTAACAGAGCGAAACCGTCGG	0.547													14	18					0	0	1	0	0
GLDN	342035	broad.mit.edu	37	15	51676017	51676017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:51676017G>A	uc002aba.2	+	4	638	c.469G>A	c.(469-471)GGA>AGA	p.G157R	GLDN_uc010bez.1_Silent_p.T139T|GLDN_uc002abb.2_Missense_Mutation_p.G33R	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	157	Extracellular (Potential).|Collagen-like 1.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AGGACACAACGGATTGGATGG	0.423													23	23					0	0	1	0	0
GLDN	342035	broad.mit.edu	37	15	51687033	51687033	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:51687033G>A	uc002aba.2	+	5	712	c.543G>A	c.(541-543)GGG>GGA	p.G181G	GLDN_uc002abb.2_Silent_p.G57G	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	181	Extracellular (Potential).|Collagen-like 1.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		TTTGGTCAGGGATACCTGGAG	0.493													10	44					0	0	1	0	0
SCG3	29106	broad.mit.edu	37	15	51980459	51980459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:51980459G>A	uc002abh.2	+	5	808	c.400G>A	c.(400-402)GAT>AAT	p.D134N	SCG3_uc010ufz.1_5'UTR	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	134					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		CTGTCTAGATGATCCAGATGG	0.388													9	28					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306742	54306742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:54306742C>T	uc002ack.2	+	1	1642	c.1642C>T	c.(1642-1644)CGT>TGT	p.R548C		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	548					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TAAACTTAGTCGTTCTGAATC	0.388													22	30					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54542603	54542603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:54542603G>A	uc002ack.2	+	6	3409	c.3409G>A	c.(3409-3411)GAA>AAA	p.E1137K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1137	Phorbol-ester/DAG-type.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GAAATGCCACGAAAAGTGTCA	0.507													14	51					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54919113	54919113	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:54919113C>T	uc002ack.2	+	31	6447	c.6447C>T	c.(6445-6447)ATC>ATT	p.I2149I	UNC13C_uc002acm.2_Silent_p.I70I	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2149	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATCGAATTATCGGAATGACAG	0.413													24	61					0	0	1	0	0
RAB27A	5873	broad.mit.edu	37	15	55497788	55497788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:55497788G>A	uc002aco.2	-	7	816	c.583C>T	c.(583-585)CCT>TCT	p.P195S	RAB27A_uc002acr.2_Missense_Mutation_p.P195S|RAB27A_uc002acp.2_Missense_Mutation_p.P195S|RAB27A_uc002acq.2_Missense_Mutation_p.P195S	NM_183234	NP_899057	P51159	RB27A_HUMAN	Ras-related protein Rab-27A	195					small GTPase mediated signal transduction	dendrite|exocytic vesicle|late endosome|lysosome|melanosome	GTP binding|GTPase activity			ovary(1)	1				all cancers(107;0.0273)|GBM - Glioblastoma multiforme(80;0.0993)		ACTCCTTCAGGAATCCAGGAC	0.473													22	145					0	0	1	0	0
NEDD4	4734	broad.mit.edu	37	15	56141063	56141063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:56141063G>A	uc002adj.2	-	11	2926	c.2626C>T	c.(2626-2628)CCA>TCA	p.P876S	NEDD4_uc002adl.2_Missense_Mutation_p.P457S|NEDD4_uc002adi.2_Missense_Mutation_p.P804S|NEDD4_uc010ugj.1_Missense_Mutation_p.P860S|NEDD4_uc010bfm.2_Missense_Mutation_p.P859S|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	876	Mediates interaction with TNIK (By similarity).				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		AGATGGGCTGGAATTTTCAAT	0.343													43	60					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57734665	57734665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:57734665G>A	uc002aeg.2	+	4	1868	c.1792G>A	c.(1792-1794)GGA>AGA	p.G598R	CGNL1_uc010bfw.2_Missense_Mutation_p.G598R	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	598						myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GAGCGCCCAAGGAAATAACCA	0.383													9	58					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57896515	57896515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:57896515C>T	uc002aei.2	+	2	243	c.124C>T	c.(124-126)CCT>TCT	p.P42S	GCOM1_uc002aej.2_Missense_Mutation_p.P42S|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.P42S|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.P42S|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	42					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GAGTCCAGTTCCTGAGCAATG	0.498													85	103					0	0	1	0	0
RNF111	54778	broad.mit.edu	37	15	59373233	59373233	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:59373233T>C	uc002afv.2	+	8	2326	c.2047T>C	c.(2047-2049)TAT>CAT	p.Y683H	RNF111_uc002afs.2_Missense_Mutation_p.Y683H|RNF111_uc002aft.2_Missense_Mutation_p.Y683H|RNF111_uc002afu.2_Missense_Mutation_p.Y682H|RNF111_uc002afw.2_Missense_Mutation_p.Y683H|RNF111_uc002afx.2_Missense_Mutation_p.Y209H	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	683	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		TCAAGTGGATTATGTTATTCC	0.498													39	96					0	0	1	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499593	59499593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:59499593G>A	uc002agb.2	+	1	552	c.454G>A	c.(454-456)GGA>AGA	p.G152R	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	152					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	CCAAGAAAAGGGAGAAACGCG	0.423													37	107					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62538816	62538816	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:62538816C>T	uc002ain.1	-	5		c.401G>A			uc002ajj.1_Silent_p.P161P|uc002ajq.2_5'Flank|uc002ajr.1_5'Flank|uc010uhp.1_5'Flank|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		TGCTCCACTTCGGAGGGCCCT	0.562													7	3					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	62986583	62986583	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:62986583C>T	uc002alb.3	+	11	1284	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	428					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AGTCCGTTTCCCCAAAAAAGT	0.423													17	39					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	62994231	62994231	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:62994231G>A	uc002alb.3	+	15	1737	c.1737G>A	c.(1735-1737)GCG>GCA	p.A579A		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	579					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TGGGATGTGCGATCACCACTA	0.537													27	51					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63922670	63922670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:63922670C>T	uc002amp.2	-	69	13109	c.12961G>A	c.(12961-12963)GGG>AGG	p.G4321R		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4321	RCC1 14.|WD 11.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TTTACCTGCCCTTCTGAATTG	0.423													54	189					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	64050543	64050543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:64050543G>A	uc002amp.2	-	4	1200	c.1052C>T	c.(1051-1053)TCG>TTG	p.S351L	HERC1_uc010uil.1_Intron|HERC1_uc010bgt.1_Missense_Mutation_p.S351L	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	351					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						ACATGTTCTCGAATAATCAGA	0.398													9	31					0	0	1	0	0
RBPMS2	348093	broad.mit.edu	37	15	65040711	65040711	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:65040711G>A	uc002anq.2	-	6	726	c.474C>T	c.(472-474)TAC>TAT	p.Y158Y		NM_194272	NP_919248	Q6ZRY4	RBPS2_HUMAN	RNA binding protein with multiple splicing 2	158							nucleic acid binding|nucleotide binding				0						TGTACAAAGGGTAGGGGGCCC	0.622													34	96					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65494363	65494363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:65494363G>A	uc002aon.2	-	8	1214	c.1033C>T	c.(1033-1035)CAT>TAT	p.H345Y		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	345	Ig-like C2-type.				negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GTGTCATTATGATACCTGCAA	0.532													36	110					0	0	1	0	0
SLC24A1	9187	broad.mit.edu	37	15	65931988	65931988	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:65931988T>G	uc010ujf.1	+	4	2287	c.2000T>G	c.(1999-2001)ATC>AGC	p.I667S	SLC24A1_uc010ujd.1_Missense_Mutation_p.I649S|SLC24A1_uc010uje.1_Missense_Mutation_p.I649S|SLC24A1_uc010ujg.1_Missense_Mutation_p.I667S|SLC24A1_uc010ujh.1_Missense_Mutation_p.I649S	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	667	Cytoplasmic (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						AACAGCACCATCCGCAGCACC	0.622													5	10					0	0	1	0	0
ANP32A	8125	broad.mit.edu	37	15	69080189	69080189	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:69080189C>A	uc002arl.2	-	2	295	c.124G>T	c.(124-126)GAA>TAA	p.E42*		NM_006305	NP_006296	P39687	AN32A_HUMAN	acidic (leucine-rich) nuclear phosphoprotein 32	42					intracellular signal transduction|mRNA metabolic process|nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm	protein binding				0						TCCAGTTCTTCAAATTCATCT	0.453													75	51					2.26256e-52	2.29772e-52	1	1	0
SPESP1	246777	broad.mit.edu	37	15	69238782	69238782	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:69238782G>A	uc002arn.1	+	2	1037	c.909G>A	c.(907-909)CTG>CTA	p.L303L	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	303					multicellular organismal development	acrosomal vesicle					0						TTAACATGCTGTGTAATTCTA	0.299													31	29					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69324055	69324055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:69324055G>A	uc002ars.1	+	4	543	c.523G>A	c.(523-525)GAA>AAA	p.E175K	NOX5_uc002arp.1_Missense_Mutation_p.E157K|NOX5_uc002arq.1_Missense_Mutation_p.E129K|NOX5_uc010bid.1_Missense_Mutation_p.E140K|NOX5_uc002arr.1_Missense_Mutation_p.E147K|NOX5_uc010bie.1_5'UTR|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	175	Cytoplasmic (Potential).|EF-hand 4.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GGCGCTCTTCGAATCGGCCGA	0.652													11	23					0	0	1	0	0
PAQR5	54852	broad.mit.edu	37	15	69672237	69672237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:69672237G>A	uc002arz.2	+	4	445	c.67G>A	c.(67-69)GGC>AGC	p.G23S	PAQR5_uc002asa.2_Missense_Mutation_p.G23S	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	23	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						CCATGAGCAAGGCATCCTGTT	0.532													103	135					0	0	1	0	0
UACA	55075	broad.mit.edu	37	15	70991893	70991893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:70991893C>T	uc002asr.2	-	2	289	c.185G>A	c.(184-186)GGC>GAC	p.G62D	UACA_uc010uke.1_Missense_Mutation_p.G62D|UACA_uc002asq.2_Missense_Mutation_p.G49D|UACA_uc010bin.1_Missense_Mutation_p.G48D	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	62	ANK 1.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						ATCTAGTTTGCCTGGATTGAC	0.398													34	93					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72020948	72020948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:72020948G>A	uc002atb.1	+	8	1497	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	THSD4_uc002atd.1_Missense_Mutation_p.G147E|THSD4_uc010ukg.1_Missense_Mutation_p.G113E|THSD4_uc002ate.2_Missense_Mutation_p.G113E	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	473						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GATCGACCAGGAAAATACGAG	0.522													78	93					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72119267	72119267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:72119267G>A	uc002atl.3	-	42	7774	c.7301C>T	c.(7300-7302)TCC>TTC	p.S2434F	MYO9A_uc002atj.2_Missense_Mutation_p.S365F|MYO9A_uc002atk.2_Missense_Mutation_p.S1229F	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2434	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						ACATAAAGAGGAGACCGAAGA	0.453													19	54					0	0	1	0	0
PKM2	5315	broad.mit.edu	37	15	72502197	72502197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:72502197C>T	uc002atx.1	-	5	623	c.382G>A	c.(382-384)GGC>AGC	p.G128S	PKM2_uc002ats.1_5'Flank|PKM2_uc002att.1_5'Flank|PKM2_uc002atu.1_5'UTR|PKM2_uc010bit.1_Missense_Mutation_p.G133S|PKM2_uc010uki.1_Missense_Mutation_p.G202S|PKM2_uc002atv.1_Missense_Mutation_p.G163S|PKM2_uc002atw.1_Missense_Mutation_p.G128S|PKM2_uc002aty.1_Missense_Mutation_p.G128S|PKM2_uc010ukj.1_Missense_Mutation_p.G113S|PKM2_uc010ukk.1_Intron|PKM2_uc010biu.1_Missense_Mutation_p.G149S|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	128					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	TCTGCAGTGCCGCTCTAGGGA	0.512													17	98					0	0	1	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72958153	72958153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:72958153G>A	uc010uks.1	+	16	1768	c.1727G>A	c.(1726-1728)GGG>GAG	p.G576E	uc002aux.1_5'Flank|uc002auy.1_5'Flank	NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	576	Potential.										0						GAAAGCCAGGGGGCAGTGCCA	0.627													9	174					0	0	1	0	0
HIGD2B	123346	broad.mit.edu	37	15	72968622	72968622	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:72968622G>A	uc002ava.2	-	3		c.618C>T				NR_002780				Homo sapiens HIG1 domain family, member 2B pseudogene, mRNA (cDNA clone IMAGE:5742106).												0						AAACCCTCTGGATTGCTGTAA	0.577													6	6					0	0	1	0	0
BBS4	585	broad.mit.edu	37	15	73016891	73016891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:73016891C>T	uc002avb.2	+	8	525	c.482C>T	c.(481-483)GCC>GTC	p.A161V	BBS4_uc010ukv.1_Missense_Mutation_p.A149V|BBS4_uc002avc.2_5'UTR|BBS4_uc002avd.2_Missense_Mutation_p.A169V|BBS4_uc010bja.2_5'UTR	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	161	Interaction with PCM1.|TPR 3.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						TTGCACAATGCCCTGAATCTT	0.403									Bardet-Biedl_syndrome				14	41					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73590890	73590890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:73590890C>T	uc002avm.3	+	27	4245	c.4103C>T	c.(4102-4104)CCG>CTG	p.P1368L	NEO1_uc010ukx.1_Missense_Mutation_p.P1357L|NEO1_uc010uky.1_Missense_Mutation_p.P1315L|NEO1_uc010ukz.1_Missense_Mutation_p.P781L|NEO1_uc002avn.3_Missense_Mutation_p.P1006L	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1368	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CCAGCAATCCCGCCTCCAGGA	0.587													46	43					0	0	1	0	0
CD276	80381	broad.mit.edu	37	15	73996051	73996051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:73996051C>T	uc002avv.1	+	5	1019	c.785C>T	c.(784-786)ACC>ATC	p.T262I	CD276_uc010bjd.1_Missense_Mutation_p.T116I|CD276_uc002avu.1_Missense_Mutation_p.T262I|CD276_uc002avw.1_Intron|CD276_uc010ulb.1_Missense_Mutation_p.T208I|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	262	Ig-like V-type 2.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						CTAGTGGGCACCGATGCCACC	0.662													6	32					0	0	1	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74368317	74368317	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:74368317A>G	uc002axa.1	-	8	615	c.574T>C	c.(574-576)TGC>CGC	p.C192R		NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	192	Potential.										0						GCTTCTCTGCAGCTCGAGGAC	0.552													17	144					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74623558	74623558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:74623558G>A	uc002axo.2	+	15	2086	c.1692G>A	c.(1690-1692)ATG>ATA	p.M564I	CCDC33_uc002axp.2_Missense_Mutation_p.M386I|CCDC33_uc002axq.2_Missense_Mutation_p.M157I|CCDC33_uc002axr.2_Missense_Mutation_p.M157I	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	767	Potential.						protein binding			ovary(3)|skin(2)	5						TCGAGAAGATGGAGCGGGTGC	0.652													16	55					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75014765	75014766	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:75014765_75014766CC>TT	uc002ayp.3	-	2	795_796	c.673_674GG>AA	c.(673-675)GGG>AAG	p.G225K	CYP1A1_uc010bjv.2_Intron|CYP1A1_uc010bjw.2_Intron|CYP1A1_uc010bju.2_5'UTR|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Missense_Mutation_p.G225K|CYP1A1_uc010bjy.2_Missense_Mutation_p.G225K|CYP1A1_uc010bjz.1_5'UTR	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	225					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	AACCACCTCCCCGAAATTATTA	0.495									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				13	88					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042389	75042389	+	Missense_Mutation	SNP	G	A	A	rs34067076	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:75042389G>A	uc002ayr.1	+	2	374	c.310G>A	c.(310-312)GAT>AAT	p.D104N		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	104					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GCAGGGCGACGATTTCAAGGG	0.672													20	40					0	0	1	0	0
LMAN1L	79748	broad.mit.edu	37	15	75116727	75116727	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:75116727G>A	uc002ayt.1	+	13	1361	c.1359G>A	c.(1357-1359)CAG>CAA	p.Q453Q	LMAN1L_uc010bke.1_Silent_p.Q441Q|CPLX3_uc002ayu.1_5'Flank	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	453	Lumenal (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CACCTGGCCAGCCCCCAAGGG	0.597													72	87					0	0	1	0	0
CPLX3	594855	broad.mit.edu	37	15	75122526	75122526	+	Missense_Mutation	SNP	G	A	A	rs144213956		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:75122526G>A	uc002ayu.1	+	3	402	c.308G>A	c.(307-309)CGG>CAG	p.R103Q		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	103						cell junction|synapse	syntaxin binding				0						GAGCTGCCCCGGGAGCTGGCC	0.617													27	31					0	0	1	0	0
SCAMP5	192683	broad.mit.edu	37	15	75305141	75305141	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:75305141G>A	uc002azk.1	+	3	293	c.131G>A	c.(130-132)TGG>TAG	p.W44*	SCAMP5_uc002azl.1_Nonsense_Mutation_p.W44*|SCAMP5_uc002azm.1_Nonsense_Mutation_p.W44*|SCAMP5_uc002azn.1_Nonsense_Mutation_p.W44*|SCAMP5_uc010uly.1_Silent_p.L25L	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	44	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						TACTACCTCTGGATGTGTGAG	0.607													22	25					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77474085	77474085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:77474085G>A	uc002bcm.2	-	3	492	c.184C>T	c.(184-186)CGG>TGG	p.R62W	SGK269_uc002bcn.2_Missense_Mutation_p.R62W	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	62					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		ACAGGAGGCCGGAAATTGCCC	0.502													81	81					0	0	1	0	0
CHRNA5	1138	broad.mit.edu	37	15	78873221	78873221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:78873221G>A	uc002bdy.2	+	2	337	c.175G>A	c.(175-177)GAA>AAA	p.E59K	CHRNA5_uc002bdz.2_Missense_Mutation_p.E59K	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	59	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TCAAGACTACGAAAGATGGGT	0.328													45	32					0	0	1	0	0
CTSH	1512	broad.mit.edu	37	15	79227365	79227365	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:79227365C>A	uc002ben.2	-	6	421	c.324G>T	c.(322-324)GTG>GTT	p.V108V	CTSH_uc010unf.1_RNA|CTSH_uc010bll.1_Intron|CTSH_uc010ung.1_Silent_p.V120V	NM_148979	NP_683880	P09668	CATH_HUMAN	cathepsin H isoform b precursor	120					protein destabilization|proteolysis	lysosome	cysteine-type endopeptidase activity			central_nervous_system(2)|large_intestine(1)	3						TCCGCCAGTCCACGGAAGGTG	0.453													32	50					3.03874e-20	3.07431e-20	1	1	0
ZFAND6	54469	broad.mit.edu	37	15	80429888	80429888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:80429888C>T	uc002bfe.1	+	7	856	c.545C>T	c.(544-546)TCT>TTT	p.S182F	ZFAND6_uc002bff.1_Missense_Mutation_p.S182F|ZFAND6_uc002bfg.1_Missense_Mutation_p.S170F|ZFAND6_uc002bfh.1_Missense_Mutation_p.S182F|ZFAND6_uc002bfi.1_Missense_Mutation_p.S182F	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	182	AN1-type.						DNA binding|zinc ion binding				0						CACAATTGCTCTTACAATTAC	0.388													17	42					0	0	1	0	0
FAH	2184	broad.mit.edu	37	15	80467368	80467368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:80467368C>T	uc002bfj.2	+	11	930	c.848C>T	c.(847-849)CCC>CTC	p.P283L	FAH_uc002bfk.1_Missense_Mutation_p.P283L|FAH_uc002bfm.1_Missense_Mutation_p.P283L|FAH_uc002bfn.1_Missense_Mutation_p.P213L|FAH_uc010bln.1_5'Flank|FAH_uc010blo.1_5'Flank	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	283					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						GACCCCAGGCCCCTGCCGTAT	0.607									Tyrosinemia_type_1				47	115					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81641868	81641868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:81641868G>A	uc002bgo.1	-	11	1124	c.1124C>T	c.(1123-1125)TCA>TTA	p.S375L	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.S375L	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	375	Helical; (Potential).					integral to membrane				ovary(1)|liver(1)	2						GTCAAAGGCTGATGGTGCTAT	0.582													4	15					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81660637	81660637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:81660637C>T	uc002bgo.1	-	3	269	c.269G>A	c.(268-270)GGG>GAG	p.G90E	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.G90E	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	90	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GGTCAGCCTCCCTTCAAACTT	0.348													67	112					0	0	1	0	0
EFTUD1	79631	broad.mit.edu	37	15	82520636	82520636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:82520636G>A	uc002bgt.1	-	10	1134	c.965C>T	c.(964-966)TCT>TTT	p.S322F	EFTUD1_uc002bgu.1_Missense_Mutation_p.S271F	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	322					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TAATCCTAAAGAAGTCACTAT	0.433													8	28					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83936900	83936900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:83936900C>T	uc002bjt.1	-	2	272	c.184G>A	c.(184-186)GGA>AGA	p.G62R	BNC1_uc010uos.1_Missense_Mutation_p.G50R	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	62					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GCCACCCATCCATGCTTGCAT	0.418													46	43					0	0	1	0	0
SH3GL3	6457	broad.mit.edu	37	15	84233937	84233937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:84233937G>A	uc002bjw.2	+	3	361	c.166G>A	c.(166-168)GAA>AAA	p.E56K	SH3GL3_uc010bms.2_Missense_Mutation_p.E56K|SH3GL3_uc010uot.1_Missense_Mutation_p.E56K|SH3GL3_uc002bjx.2_5'UTR|SH3GL3_uc002bju.2_Missense_Mutation_p.E64K|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	56	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						AAAAACCACTGAATATCTTCA	0.289													11	29					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85341193	85341193	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:85341193C>T	uc002bld.2	+	6	2829	c.2493C>T	c.(2491-2493)TTC>TTT	p.F831F	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	831	C2H2-type 7.				cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AATGTGCATTCTGCCCCATGG	0.597													5	46					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85406053	85406053	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:85406053C>T	uc002ble.2	+	10	5090	c.4923C>T	c.(4921-4923)GGC>GGT	p.G1641G	ALPK3_uc010upc.1_5'Flank	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1641	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCGAGTCGGGCCGCACGTGCA	0.587													29	19					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85407716	85407716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:85407716C>T	uc002ble.2	+	12	5316	c.5149C>T	c.(5149-5151)CCA>TCA	p.P1717S	ALPK3_uc010upc.1_Missense_Mutation_p.P18S	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1717	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AAACAATATCCCATATGCTAC	0.542													17	89					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88678460	88678460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:88678460G>A	uc002bme.1	-	9	1238	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F	NTRK3_uc002bmh.2_Missense_Mutation_p.S359F|NTRK3_uc002bmf.1_Missense_Mutation_p.S359F|NTRK3_uc010upl.1_Missense_Mutation_p.S261F|NTRK3_uc010bnh.1_Missense_Mutation_p.S359F|NTRK3_uc002bmg.2_Missense_Mutation_p.S359F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	359	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCAGCCCTCGGAAATCTCTCC	0.552			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			42	110					0	0	1	0	0
MIR1179	100302235	broad.mit.edu	37	15	89151413	89151413	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:89151413C>T	hsa-mir-1179|MI0006272	+			c.76C>T																				0						TGCCATTTATCCTTTTCTGAC	0.438													33	30					0	0	1	0	0
MFGE8	4240	broad.mit.edu	37	15	89453037	89453037	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:89453037T>C	uc002bng.3	-	2	304	c.191A>G	c.(190-192)AAC>AGC	p.N64S	MFGE8_uc002bnf.3_5'UTR|MFGE8_uc002bnh.3_Missense_Mutation_p.N64S|MFGE8_uc010bnn.2_Missense_Mutation_p.N56S|MFGE8_uc010upq.1_Intron|MFGE8_uc010upr.1_Missense_Mutation_p.N64S|MFGE8_uc010bno.2_Intron	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	64	EGF-like.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					CTCACAGTGGTTGCCCGCGTA	0.567													57	50					0	0	1	0	0
FANCI	55215	broad.mit.edu	37	15	89816644	89816644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:89816644C>T	uc010bnp.1	+	11	1009	c.919C>T	c.(919-921)CCC>TCC	p.P307S	FANCI_uc002bnm.1_Missense_Mutation_p.P307S|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.P128S	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	307					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					TAACTTAAGTCCCTTCAGCAT	0.308								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				47	85					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90170247	90170247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:90170247C>T	uc002boe.2	+	22	5663	c.5663C>T	c.(5662-5664)TCC>TTC	p.S1888F	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1888					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CGCGCTTTCTCCAGGAGGCGC	0.478													58	190					0	0	1	0	0
PLIN1	5346	broad.mit.edu	37	15	90213292	90213292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:90213292C>T	uc010upx.1	-	5	627	c.517G>A	c.(517-519)GCT>ACT	p.A173T	PLIN1_uc002boh.2_Missense_Mutation_p.A173T	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	173					triglyceride catabolic process	lipid particle	lipid binding			central_nervous_system(1)|skin(1)	2						CCTCCAGAAGCCAGTCGGCCA	0.632													10	22					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90348321	90348321	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:90348321G>A	uc002bop.3	-	4	1177	c.885C>T	c.(883-885)TCC>TCT	p.S295S		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	295	Extracellular.|Interaction with HCoV-229E.|Metalloprotease.			DYVEKQAS->QSVEETAQ: No change in receptor activity and HCoV-229E infection.|DYVEKQAS->QSVNETAQ: Complete loss of receptor activity and blocks HCoV-229E infection. No loss of enzymatic activity.|DYVEKQAS->QSVNEQAQ: No change in receptor activity and HCoV-229E infection.	angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	AGACACCATTGGATGCCTGCT	0.562													42	98					0	0	1	0	0
AP3S2	10239	broad.mit.edu	37	15	90447118	90447118	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:90447118G>A	uc002bos.3	-	4	554	c.399C>T	c.(397-399)ACC>ACT	p.T133T	C15orf38_uc002bot.1_RNA|C15orf38_uc002bou.2_Silent_p.T133T	NM_182616	NP_872422	P59780	AP3S2_HUMAN	hypothetical protein LOC348110	Error:Variant_position_missing_in_P59780_after_alignment					intracellular protein transport|vesicle-mediated transport	cytoplasmic vesicle membrane|Golgi apparatus|membrane coat	protein transporter activity				0	Lung NSC(78;0.0181)|all_lung(78;0.0384)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.223)			TGTGGTCGGGGGTGAGGCTCT	0.652													33	47					0	0	1	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892029	90892029	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:90892029C>T	uc010uqf.1	-	1		c.651G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						CACACCCCTCCCCTACCCCTA	0.512													6	7					0	0	1	0	0
MAN2A2	4122	broad.mit.edu	37	15	91456115	91456115	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:91456115C>T	uc010bnz.2	+	17	2593	c.2478C>T	c.(2476-2478)GTC>GTT	p.V826V	MAN2A2_uc002bqc.2_Silent_p.V826V|MAN2A2_uc010uql.1_Silent_p.V488V|MAN2A2_uc010uqm.1_Silent_p.V405V|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	826					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			AGCCCTACGTCCCCAAGGAGC	0.567													171	281					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91811757	91811757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:91811757G>A	uc002bqv.2	+	8	1686	c.1295G>A	c.(1294-1296)GGT>GAT	p.G432D	SV2B_uc002bqt.2_Missense_Mutation_p.G432D|SV2B_uc010uqv.1_Missense_Mutation_p.G281D|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	432	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GTGTTTTTTGGTGAGCATGTG	0.413													168	411					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92690348	92690348	+	Silent	SNP	C	T	T	rs78550975	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:92690348C>T	uc002bqx.2	+	8	1848	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I	SLCO3A1_uc002bqy.2_Silent_p.I549I|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Silent_p.I491I	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	549	Helical; Name=10; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GCAGCCTGATCGGTGCCATGG	0.582													41	59					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841751	94841751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:94841751G>A	uc002btj.2	+	1	322	c.257G>A	c.(256-258)GGG>GAG	p.G86E	MCTP2_uc010urg.1_Missense_Mutation_p.G86E|MCTP2_uc002bti.2_Missense_Mutation_p.G86E|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.G86E|MCTP2_uc002btg.3_Missense_Mutation_p.G86E|MCTP2_uc002bth.3_Missense_Mutation_p.G86E	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	86					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TCCACTGCAGGGATCTTTCCC	0.577													22	84					0	0	1	0	0
SPATA8	145946	broad.mit.edu	37	15	97326937	97326937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:97326937G>A	uc002bue.2	+	1	262	c.52G>A	c.(52-54)GAA>AAA	p.E18K	uc010uro.1_5'Flank|uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	18										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			TCTCTACCAGGAAATTGCCCC	0.552													17	49					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100331064	100331064	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:100331064G>A	uc010urx.1	-	5		c.3128C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TCTCCCAGAGGGGGCGGCCCC	0.443													27	39					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101565009	101565009	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:101565009T>C	uc002bwr.2	+	16	2388	c.2069T>C	c.(2068-2070)GTT>GCT	p.V690A	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	690	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCAAGTAGGTTGAGTCCGTG	0.562													65	74					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101589973	101589973	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:101589973G>T	uc002bwr.2	+	23	3743	c.3424G>T	c.(3424-3426)GAT>TAT	p.D1142Y	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1142					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TTCCTTGATTGATCAGTGGTT	0.463													32	33					2.80507e-11	2.8267e-11	1	1	0
OR4F6	390648	broad.mit.edu	37	15	102346710	102346710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr15:102346710C>T	uc010utr.1	+	1	788	c.788C>T	c.(787-789)CCC>CTC	p.P263L		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TTTCCATTTCCCACATCACAT	0.373													8	87					0	0	1	0	0
LUC7L	55692	broad.mit.edu	37	16	249084	249084	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:249084G>A	uc002cgc.1	-	6	775	c.664C>T	c.(664-666)CGA>TGA	p.R222*	LUC7L_uc002cga.1_Nonsense_Mutation_p.R222*|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Nonsense_Mutation_p.R222*|LUC7L_uc002cgb.1_Nonsense_Mutation_p.R136*	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	222	Potential.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				AGCTTCTCTCGGATCTGAATG	0.458													32	82					0	0	1	0	0
ITFG3	83986	broad.mit.edu	37	16	304634	304634	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:304634C>T	uc002cgf.2	+	3	417	c.222C>T	c.(220-222)GAC>GAT	p.D74D	ITFG3_uc010bqr.2_Intron|ITFG3_uc002cgg.2_Silent_p.D74D|ITFG3_uc010uud.1_RNA|ITFG3_uc002cgh.2_Silent_p.D74D	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	74	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				CGTGTCCAGACCGGCCGGCGT	0.602													50	108					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	339520	339520	+	Silent	SNP	G	A	A	rs145726235		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:339520G>A	uc002cgp.1	-	10	2559	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	AXIN1_uc002cgq.1_Silent_p.I758I	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	794	DIX.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				TGCGGTAGGGGATGGGTTCCC	0.632													15	35					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	343565	343565	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:343565G>A	uc002cgp.1	-	8	2286	c.2109C>T	c.(2107-2109)CCC>CCT	p.P703P	AXIN1_uc002cgq.1_Silent_p.P703P	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	703	Interaction with RNF111.|Interaction with PPP2CA.|Interaction with HIPK2 (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				GCTGGGTTAGGGGGTTGGGAG	0.682													42	105					0	0	1	0	0
DECR2	26063	broad.mit.edu	37	16	457472	457472	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:457472C>T	uc002chb.2	+	4	355	c.249C>T	c.(247-249)CTC>CTT	p.L83L	DECR2_uc002chc.2_5'UTR|DECR2_uc010bqv.2_5'UTR|DECR2_uc002chd.2_5'UTR|DECR2_uc002che.1_RNA	NM_020664	NP_065715	Q9NUI1	DECR2_HUMAN	2,4-dienoyl CoA reductase 2	83						peroxisome	2,4-dienoyl-CoA reductase (NADPH) activity|binding				0		Hepatocellular(16;0.00015)				GCCTCCCTCTCTCTATGGACG	0.637													13	27					0	0	1	0	0
RAB40C	57799	broad.mit.edu	37	16	677524	677525	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:677524_677525GG>AA	uc002chr.2	+	6	864_865	c.748_749GG>AA	c.(748-750)GGC>AAC	p.G250N	RAB40C_uc002chq.2_Missense_Mutation_p.G231N|WFIKKN1_uc002chs.1_5'Flank	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	250					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GGCCGGGGGCGGCGGCAGCAAG	0.644													26	32					0	0	1	0	0
CHTF18	63922	broad.mit.edu	37	16	847969	847969	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:847969G>C	uc002cke.3	+	22	2985	c.2922G>C	c.(2920-2922)TTG>TTC	p.L974F	CHTF18_uc002ckf.3_Missense_Mutation_p.L1002F|CHTF18_uc010brf.2_Missense_Mutation_p.L556F|CHTF18_uc002ckg.3_Missense_Mutation_p.L492F	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	974					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				TCAGGGACTTGCTCTAGTTCT	0.592													10	21					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270215	1270215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:1270215G>A	uc002cks.2	+	35	6531	c.6283G>A	c.(6283-6285)GAC>AAC	p.D2095N	CACNA1H_uc002ckt.2_Missense_Mutation_p.D2089N|CACNA1H_uc002cku.2_Missense_Mutation_p.D790N|CACNA1H_uc010brj.2_Missense_Mutation_p.D806N|CACNA1H_uc002ckv.2_Missense_Mutation_p.D784N	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2095	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CGAGGCCTCGGACCCAGCCGA	0.746													12	12					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270844	1270844	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:1270844A>G	uc002cks.2	+	35	7160	c.6912A>G	c.(6910-6912)GAA>GAG	p.E2304E	CACNA1H_uc002ckt.2_Silent_p.E2298E|CACNA1H_uc002cku.2_Silent_p.E999E|CACNA1H_uc010brj.2_Silent_p.E1015E|CACNA1H_uc002ckv.2_Silent_p.E993E	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2304	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGCCCCTGGAACCCCCAGAAT	0.627													22	56					0	0	1	0	0
PTX4	390667	broad.mit.edu	37	16	1535945	1535945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:1535945G>A	uc010uvf.1	-	3	1417	c.1417C>T	c.(1417-1419)CCC>TCC	p.P473S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	478						extracellular region	metal ion binding				0						CGGCCTCAGGGACAGCGTTCC	0.657													6	12					0	0	1	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1813756	1813756	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:1813756G>T	uc002cmk.2	+	17	2114	c.1994G>T	c.(1993-1995)GGC>GTC	p.G665V	MAPK8IP3_uc002cml.2_Missense_Mutation_p.G659V|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.G666V	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	665					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CAGGCCTGCGGCTGGAGCCTG	0.453													6	2					5.9392e-07	5.9648e-07	1	1	0
HS3ST6	64711	broad.mit.edu	37	16	1961845	1961845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:1961845C>T	uc002cnf.2	-	2	682	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	228											0						CGGCCGACCTCTCCGGCCGGG	0.657													23	61					0	0	1	0	0
RPS2	6187	broad.mit.edu	37	16	2012119	2012119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2012119G>A	uc002cnn.2	-	6	1050	c.862C>T	c.(862-864)CCA>TCA	p.P288S	RPS2_uc010bsa.1_RNA|RPS2_uc002cnl.2_Missense_Mutation_p.P230S|RPS2_uc002cnm.2_RNA|RPS2_uc002cno.2_Missense_Mutation_p.P288S|SNHG9_uc002cnr.2_5'Flank	NM_002952	NP_002943	P15880	RS2_HUMAN	ribosomal protein S2	288					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleoplasm	fibroblast growth factor 1 binding|fibroblast growth factor 3 binding|RNA binding|structural constituent of ribosome				0						GCCACAGCTGGAGCCTGAGTC	0.478													23	8					0	0	1	0	0
ZNF598	90850	broad.mit.edu	37	16	2049799	2049799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2049799G>A	uc002cof.1	-	11	1766	c.1751C>T	c.(1750-1752)CCC>CTC	p.P584L	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	584						intracellular	zinc ion binding			lung(1)|breast(1)	2						AACTTTAGAGGGTTGGATGGA	0.667													3	12					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2140797	2140797	+	Silent	SNP	G	A	A	rs2855367		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2140797G>A	uc002cos.1	-	44	12225	c.12016C>T	c.(12016-12018)CTA>TTA	p.L4006L	PKD1_uc002cot.1_Silent_p.L4005L|MIR1225_hsa-mir-1225|MI0006311_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	4006	Cytoplasmic (Potential).			QL -> HV (in Ref. 1; AAC50128).	calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						ACGAAGCGTAGCTGCTGGGCA	0.662													16	31					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2161121	2161121	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2161121G>A	uc002cos.1	-	15	4256	c.4047C>T	c.(4045-4047)TTC>TTT	p.F1349F	PKD1_uc002cot.1_Silent_p.F1349F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1349	PKD 8.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CGCTCCGCGTGAAGTTGTGTG	0.662													12	18					0	0	1	0	0
CASKIN1	57524	broad.mit.edu	37	16	2230299	2230299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2230299G>A	uc010bsg.1	-	18	3102	c.3070C>T	c.(3070-3072)CCT>TCT	p.P1024S		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1024	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						TGGCCCTCAGGAGGCCTGCGG	0.721													3	3					0	0	1	0	0
ATP6V0C	527	broad.mit.edu	37	16	2569620	2569620	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2569620G>A	uc002cqn.2	+	3	494	c.342G>A	c.(340-342)GGG>GGA	p.G114G	TBC1D24_uc002cqm.2_3'UTR|ATP6V0C_uc002cqo.2_Silent_p.G71G|AMDHD2_uc002cqp.2_5'Flank|AMDHD2_uc002cqq.2_5'Flank|AMDHD2_uc010uwc.1_5'Flank|AMDHD2_uc010uwd.1_5'Flank	NM_001694	NP_001685	P27449	VATL_HUMAN	ATPase, H+ transporting, lysosomal, V0 subunit	114	Helical; (Potential).				ATP hydrolysis coupled proton transport|ATP synthesis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|interspecies interaction between organisms|transferrin transport	endosome membrane|integral to membrane|proton-transporting ATP synthase complex, coupling factor F(o)|proton-transporting V-type ATPase, V0 domain|vacuolar membrane	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism|ubiquitin protein ligase binding			ovary(1)	1		Ovarian(90;0.17)				GCATCGTGGGGGACGCTGGCG	0.682													22	14					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2820365	2820365	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:2820365C>T	uc002crk.2	+	13	8583	c.8034C>T	c.(8032-8034)CCC>CCT	p.P2678P		NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2678	Ser-rich.|Arg-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCCGCAGCCCCCGGAAGCCAA	0.662													3	8					0	0	1	0	0
CLDN9	9080	broad.mit.edu	37	16	3063628	3063628	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3063628C>T	uc010uwo.1	+	1	1172	c.265C>T	c.(265-267)CTG>TTG	p.L89L		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	89	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CATTGCCCTCCTGCTGGCCCT	0.657													19	51					0	0	1	0	0
THOC6	79228	broad.mit.edu	37	16	3077381	3077382	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3077381_3077382CC>TT	uc002ctb.2	+	12	1121_1122	c.825_826CC>TT	c.(823-828)GGCCAG>GGTTAG	p.Q276*	THOC6_uc002ctd.2_Intron|THOC6_uc002ctc.2_Nonsense_Mutation_p.Q252*|THOC6_uc002cta.2_Nonsense_Mutation_p.Q252*	NM_024339	NP_077315	Q86W42	THOC6_HUMAN	WD repeat domain 58 isoform 1	276	WD 6.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	RNA binding			ovary(1)|central_nervous_system(1)	2						TGTCAGCTGGCCAGGGCCGCTG	0.653													23	33					0	0	1	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139278	3139278	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3139278C>T	uc002ctv.1	-	5	2080	c.1992G>A	c.(1990-1992)CAG>CAA	p.Q664Q	ZSCAN10_uc002cty.1_Silent_p.Q325Q|ZSCAN10_uc002ctw.1_Silent_p.Q582Q|ZSCAN10_uc002ctx.1_Silent_p.Q592Q	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	664					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGGGCTCGGCCTGCTCCTGCC	0.706													4	7					0	0	1	0	0
ZNF205	7755	broad.mit.edu	37	16	3165421	3165421	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3165421G>A	uc002cub.2	+	3	258	c.123G>A	c.(121-123)GGG>GGA	p.G41G	MGC3771_uc010btd.2_5'Flank|MGC3771_uc010bte.2_RNA|MGC3771_uc002ctz.3_RNA|ZNF205_uc002cua.2_Silent_p.G41G	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	41					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TACCTTCAGGGGACACTCAGG	0.592													17	48					0	0	1	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266145	3266145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3266145G>A	uc010uwv.1	+	1	584	c.436G>A	c.(436-438)GAT>AAT	p.D146N		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						CATCTTCTGCGATGTGACTCC	0.522													11	17					0	0	1	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266247	3266247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3266247C>T	uc010uwv.1	+	1	686	c.538C>T	c.(538-540)CTC>TTC	p.L180F		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						ATTTCTTTGCCTCCTGGCTTC	0.532													3	18					0	0	1	0	0
ZNF597	146434	broad.mit.edu	37	16	3487421	3487421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3487421G>A	uc002cvd.2	-	4	462	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	93					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCCTCAGAGGATTTTTCTGG	0.443													44	31					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3786113	3786113	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:3786113T>C	uc002cvv.2	-	28	4856	c.4652A>G	c.(4651-4653)GAG>GGG	p.E1551G	CREBBP_uc002cvw.2_Missense_Mutation_p.E1513G	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1551	Interaction with TRERF1.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		CTTAATGCTCTCTTCTAACAC	0.468			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				13	54					0	0	1	0	0
ADCY9	115	broad.mit.edu	37	16	4042326	4042326	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:4042326G>A	uc002cvx.2	-	5	2567	c.2028C>T	c.(2026-2028)CTC>CTT	p.L676L		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	676	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						GAGGGCTGAGGAGCCCGTTCT	0.587													13	38					0	0	1	0	0
MGRN1	23295	broad.mit.edu	37	16	4732940	4732940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:4732940C>T	uc002cwz.2	+	14	1611	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	MGRN1_uc002cxa.2_Missense_Mutation_p.S492F|MGRN1_uc010btx.2_Missense_Mutation_p.S471F|MGRN1_uc010btw.2_Missense_Mutation_p.S471F|MGRN1_uc002cxb.2_Missense_Mutation_p.S531F|MGRN1_uc010uxo.1_Missense_Mutation_p.S470F|MGRN1_uc010uxp.1_Missense_Mutation_p.S470F|MGRN1_uc010uxq.1_RNA	NM_001142290	NP_001135762	O60291	MGRN1_HUMAN	mahogunin, ring finger 1 isoform 3	492					endosome to lysosome transport|negative regulation of cAMP-mediated signaling|negative regulation of G-protein coupled receptor protein signaling pathway|protein monoubiquitination	cytosol|early endosome|nucleus|plasma membrane|plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						GAAAGCAGCTCCCCTGAGGTG	0.692													6	5					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4827818	4827818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:4827818C>T	uc002cxq.2	-	10	1198	c.1057G>A	c.(1057-1059)GAT>AAT	p.D353N	SEPT12_uc002cxr.2_Missense_Mutation_p.D307N|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	353					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						TCATCAGAATCGTCATGGGCC	0.662													5	1					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7568267	7568267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:7568267C>T	uc002cys.2	+	5	1134	c.146C>T	c.(145-147)GCG>GTG	p.A49V	A2BP1_uc010buf.1_Missense_Mutation_p.A49V|A2BP1_uc002cyr.1_Missense_Mutation_p.A49V|A2BP1_uc002cyt.2_Missense_Mutation_p.A49V|A2BP1_uc010uxz.1_Missense_Mutation_p.A92V|A2BP1_uc010uya.1_Missense_Mutation_p.A85V|A2BP1_uc002cyv.1_Missense_Mutation_p.A49V|A2BP1_uc010uyb.1_Missense_Mutation_p.A49V|A2BP1_uc002cyw.2_Missense_Mutation_p.A69V|A2BP1_uc002cyy.2_Missense_Mutation_p.A69V|A2BP1_uc002cyx.2_Missense_Mutation_p.A69V|A2BP1_uc010uyc.1_Missense_Mutation_p.A69V	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	49					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCCCACCCCGCGCCAGAGTAC	0.657													35	92					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274037	10274037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:10274037C>T	uc002czo.3	-	2	780	c.232G>A	c.(232-234)GAC>AAC	p.D78N	GRIN2A_uc010uym.1_Missense_Mutation_p.D78N|GRIN2A_uc002czr.3_Missense_Mutation_p.D78N|GRIN2A_uc010buk.2_Missense_Mutation_p.D78N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	78	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCTTGGGGTCGGTGCGGTTC	0.667													17	75					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788365	10788365	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:10788365G>A	uc002czz.1	-	1	438	c.366C>T	c.(364-366)CTC>CTT	p.L122L		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	122	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TGTCCTGCAAGAGCCTCATGG	0.652													60	34					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	10996525	10996525	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:10996525C>T	uc002dai.3	+	8	772	c.639C>T	c.(637-639)TCC>TCT	p.S213S	CIITA_uc002daj.3_Silent_p.S214S|CIITA_uc002dak.3_Silent_p.S164S|CIITA_uc002dag.2_Silent_p.S213S|CIITA_uc002dah.2_Silent_p.S165S|CIITA_uc010bup.1_Silent_p.S213S	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	213					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TGCCTTTCTCCAGTTCCTCGT	0.458			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								12	43					0	0	1	0	0
CLEC16A	23274	broad.mit.edu	37	16	11038592	11038592	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:11038592G>A	uc002dao.2	+	1	248	c.18G>A	c.(16-18)CGG>CGA	p.R6R	CLEC16A_uc002dan.3_Silent_p.R6R|DEXI_uc002dal.2_5'Flank	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	6										ovary(1)|central_nervous_system(1)	2						GCCGCTCGCGGAGCTGGGTGG	0.701													9	9					0	0	1	0	0
TXNDC11	51061	broad.mit.edu	37	16	11785885	11785885	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:11785885C>G	uc010buu.1	-	9	1304	c.1242G>C	c.(1240-1242)GAG>GAC	p.E414D	TXNDC11_uc002dbg.1_Missense_Mutation_p.E387D	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	414					cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						GAAGGAGACGCTCCACCACCT	0.612													10	19					0	0	1	0	0
GSPT1	2935	broad.mit.edu	37	16	11980332	11980332	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:11980332A>T	uc002dbr.2	-	7	862	c.835T>A	c.(835-837)TAC>AAC	p.Y279N	GSPT1_uc002dbu.2_Missense_Mutation_p.Y416N|GSPT1_uc002dbt.2_Missense_Mutation_p.Y417N|GSPT1_uc010bux.2_Missense_Mutation_p.Y279N	NM_001130007	NP_001123479	P15170	ERF3A_HUMAN	G1 to S phase transition 1 isoform 3	279					G1/S transition of mitotic cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation	intracellular	GTP binding|GTPase activity|protein binding|translation release factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ACTTACATGTACCAAGGACAG	0.343													8	16					0	0	1	0	0
NTAN1	123803	broad.mit.edu	37	16	15141896	15141896	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:15141896A>T	uc002ddd.2	-	2	147	c.142T>A	c.(142-144)TAT>AAT	p.Y48N	PDXDC1_uc002ddc.2_Intron|NTAN1_uc010uzo.1_Intron	NM_173474	NP_775745	Q96AB6	NTAN1_HUMAN	N-terminal Asn amidase	48						cytoplasm					0						TGCTGAACATACAGAAGGCCC	0.403													19	89					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15811070	15811070	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:15811070T>C	uc002ddy.2	-	38	5538	c.5431A>G	c.(5431-5433)AAG>GAG	p.K1811E	MYH11_uc002ddv.2_Missense_Mutation_p.K1818E|MYH11_uc002ddw.2_Missense_Mutation_p.K1811E|MYH11_uc002ddx.2_Missense_Mutation_p.K1818E|MYH11_uc010bvg.2_Missense_Mutation_p.K1643E|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Missense_Mutation_p.K517E	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1811	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GACTTGAACTTGGACTTGACG	0.632			T	CBFB	AML								21	58					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16139753	16139753	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:16139753C>T	uc010bvi.2	+	9	1276	c.1101C>T	c.(1099-1101)ACC>ACT	p.T367T	ABCC1_uc010bvj.2_Silent_p.T367T|ABCC1_uc010bvk.2_Silent_p.T367T|ABCC1_uc010bvl.2_Silent_p.T367T|ABCC1_uc010bvm.2_Silent_p.T367T|ABCC1_uc002del.3_Silent_p.T251T|ABCC1_uc010bvn.2_Silent_p.T230T	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	367	ABC transmembrane type-1 1.|Helical; Name=7.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ACTTCTACACCGTGCTGCTGT	0.547											OREG0023639	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	12					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16177243	16177243	+	Silent	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:16177243A>T	uc010bvi.2	+	17	2311	c.2136A>T	c.(2134-2136)CCA>CCT	p.P712P	ABCC1_uc010bvj.2_Intron|ABCC1_uc010bvk.2_Silent_p.P712P|ABCC1_uc010bvl.2_Silent_p.P712P|ABCC1_uc010bvm.2_Intron|ABCC1_uc002del.3_Silent_p.P596P	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	712	ABC transporter 1.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CCTATGTGCCACAGCAGGCCT	0.527													14	40					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16271479	16271479	+	Missense_Mutation	SNP	C	T	T	rs72653794		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:16271479C>T	uc002den.3	-	19	2457	c.2420G>A	c.(2419-2421)CGG>CAG	p.R807Q	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	807	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CACGAGAATCCGTGTCTGGGC	0.388													20	36					0	0	1	0	0
NOMO3	408050	broad.mit.edu	37	16	16349603	16349603	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:16349603C>T	uc002deq.2	+	10	1125	c.990C>T	c.(988-990)TCC>TCT	p.S330S	NOMO3_uc002dep.2_Silent_p.S330S|NOMO3_uc010bvp.1_Silent_p.S163S	NM_001004067	NP_001004067	P69849	NOMO3_HUMAN	nodal modulator 3 precursor	330	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TGGGATTCTCCGTCACCGGGA	0.557													30	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	16465372	16465372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:16465372C>T	uc002dey.2	+	1	376	c.89C>T	c.(88-90)TCG>TTG	p.S30L						SubName: Full=cDNA FLJ42525 fis, clone BRACE3001391, highly similar to Polycystin;																		CCCAACAACTCGGACTGGGCT	0.682													8	9					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17235193	17235193	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:17235193G>A	uc002dfa.2	-	7	1489	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	468	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CGCACTCCAGGAAGAGCCGAT	0.612													15	29					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17353332	17353332	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:17353332C>T	uc002dfa.2	-	3	511	c.426G>A	c.(424-426)CCG>CCA	p.P142P		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	142	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CTTTCTCTTTCGGCCGATGAG	0.418													24	63					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19020603	19020603	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:19020603G>A	uc002dfq.2	+	2	307	c.177G>A	c.(175-177)CGG>CGA	p.R59R	TMC7_uc010vao.1_Silent_p.R59R|TMC7_uc002dfp.2_Silent_p.R59R|TMC7_uc010vap.1_5'UTR	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	59	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						TCCATTCCCGGGACAAGCAAA	0.507													27	40					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19067875	19067875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:19067875C>T	uc002dfq.2	+	14	2013	c.1883C>T	c.(1882-1884)TCG>TTG	p.S628L	TMC7_uc002dfp.2_Missense_Mutation_p.S628L|TMC7_uc010vap.1_Missense_Mutation_p.S518L	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	628	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						ATCCCTTCCTCGAAAGCCTGT	0.577													22	31					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19455440	19455440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:19455440C>T	uc002dgc.3	+	4	1575	c.826C>T	c.(826-828)CGT>TGT	p.R276C	TMC5_uc010vaq.1_Missense_Mutation_p.R276C|TMC5_uc002dgb.3_Missense_Mutation_p.R276C|TMC5_uc010var.1_Missense_Mutation_p.R276C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	276	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCCTCATTTCGTCACAGGAG	0.438													21	43					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20335551	20335551	+	Missense_Mutation	SNP	G	A	A	rs140222432		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20335551G>A	uc002dgv.2	-	3	205	c.122C>T	c.(121-123)TCG>TTG	p.S41L	GP2_uc002dgw.2_Missense_Mutation_p.S41L|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	41						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CAGCCCATACGAACTGGCTTC	0.532													31	17					0	0	1	0	0
PDILT	204474	broad.mit.edu	37	16	20410537	20410537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20410537G>A	uc002dhc.1	-	2	309	c.86C>T	c.(85-87)TCC>TTC	p.S29F		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	29					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						GTGGATGCTGGAAACACCGGC	0.602													68	46					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20559468	20559469	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20559468_20559469CC>TT	uc002dhj.3	-	9	1223_1224	c.1013_1014GG>AA	c.(1012-1014)GGG>GAA	p.G338E	ACSM2B_uc002dhk.3_Missense_Mutation_p.G338E|ACSM2B_uc010bwf.1_Missense_Mutation_p.G338E	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	338					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GAAGGGACTCCCCTCCAGCGAG	0.53													47	106					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20570759	20570759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20570759C>T	uc002dhj.3	-	4	398	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	ACSM2B_uc002dhk.3_Missense_Mutation_p.R63Q|ACSM2B_uc010bwf.1_Missense_Mutation_p.R63Q	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	63					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GCTTGGGAGTCGCTTGCCAGC	0.512													7	10					0	0	1	0	0
ACSM3	6296	broad.mit.edu	37	16	20803432	20803432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20803432G>A	uc002dhr.2	+	11	1622	c.1435G>A	c.(1435-1437)GAT>AAT	p.D479N	ACSM3_uc010vba.1_Missense_Mutation_p.D508N|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	479					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						AAGAGCAGATGATGTCATATT	0.393													56	46					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20959876	20959876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20959876C>T	uc010vbe.1	-	57	11272	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1193K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3758					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCCTCAATTTCCTTACAGTAG	0.532													22	19					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975264	20975264	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20975264G>A	uc010vbe.1	-	53	9942	c.9942C>T	c.(9940-9942)ATC>ATT	p.I3314I	DNAH3_uc010vbd.1_Silent_p.I749I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3314					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACATCGGCTCGATGTTGGCCA	0.507													18	58					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975447	20975447	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:20975447G>A	uc010vbe.1	-	53	9759	c.9759C>T	c.(9757-9759)ATC>ATT	p.I3253I	DNAH3_uc010vbd.1_Silent_p.I688I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3253	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CATCCTCCAGGATGTTACCCT	0.433													76	53					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21063005	21063006	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:21063005_21063006GG>AA	uc010vbe.1	-	29	4223_4224	c.4223_4224CC>TT	c.(4222-4224)ACC>ATT	p.T1408I		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1408	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGCAGCGGTCGGTGAGGGGTGT	0.559													47	36					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21213293	21213294	+	Missense_Mutation	DNP	CC	TT	TT	rs143012218	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:21213293_21213294CC>TT	uc002dii.2	-	12	1338_1339	c.1338_1339GG>AA	c.(1336-1341)ACGGAT>ACAAAT	p.D447N	ZP2_uc010bwn.1_Missense_Mutation_p.D486N	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	447	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GGAGGAAAATCCGTCCAGAGAG	0.361													25	32					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21215695	21215695	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:21215695G>A	uc002dii.2	-	8	724	c.724C>T	c.(724-726)CTG>TTG	p.L242L	ZP2_uc010bwn.1_Silent_p.L281L|ZP2_uc010bwo.2_Silent_p.L281L	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	242	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GTAAGCTTCAGAGACACCATG	0.423													18	14					0	0	1	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261738	21261738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:21261738C>T	uc010bwp.1	+	2	894	c.851C>T	c.(850-852)CCT>CTT	p.P284L	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	284										ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		ATATCGAGTCCTGAAGACATC	0.463													16	34					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22142976	22142976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:22142976G>A	uc010vbq.1	+	19	1894	c.1798G>A	c.(1798-1800)GAC>AAC	p.D600N	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.D608N	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	600	VWFA 1.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TGTGGAAGTAGACTTCAAGGA	0.617													9	6					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23083400	23083400	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23083400G>A	uc002dll.2	-	15	2454	c.2454C>T	c.(2452-2454)TCC>TCT	p.S818S	USP31_uc002dlk.2_Silent_p.S90S|USP31_uc010vca.1_Silent_p.S121S|USP31_uc010bxm.2_Silent_p.S106S	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	818	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		TCATCTCCACGGACTCAGAGA	0.577													42	88					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226620	23226620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23226620C>T	uc002dlm.1	+	13	1919	c.1780C>T	c.(1780-1782)CCA>TCA	p.P594S		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	594	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CCAGGACAATCCAGCCCTGGA	0.612													21	57					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23391491	23391491	+	Splice_Site	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23391491G>C	uc002dln.2	+	12	1718	c.1542_splice	c.e12+1	p.N514_splice		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta						excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AGCCAATAACGTGAGTTTAGG	0.532													16	44					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23444964	23444964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23444964C>T	uc002dlo.2	-	6	900	c.712G>A	c.(712-714)GAG>AAG	p.E238K		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	238					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		TGACACAGCTCTTGCCAGGCT	0.532													12	26					0	0	1	0	0
CHP2	63928	broad.mit.edu	37	16	23767427	23767427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23767427C>T	uc002dmb.1	+	4	688	c.265C>T	c.(265-267)CAT>TAT	p.H89Y		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	89	EF-hand 2.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		GGTCTTGGCTCATTTTCGCCC	0.522													22	17					0	0	1	0	0
CHP2	63928	broad.mit.edu	37	16	23768865	23768866	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:23768865_23768866GG>AA	uc002dmb.1	+	7	975_976	c.552_553GG>AA	c.(550-555)ATGGAC>ATAAAC	p.184_185MD>IN		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	184_185	EF-hand 4.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		TAGAGAAGATGGACGTTGAGCA	0.52													25	76					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372940	24372940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:24372940C>T	uc002dmf.2	+	4	1904	c.704C>T	c.(703-705)TCA>TTA	p.S235L		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	235					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CGGAGGCGGTCAAGTTCTCGC	0.552													22	19					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372964	24372964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:24372964G>A	uc002dmf.2	+	4	1928	c.728G>A	c.(727-729)AGA>AAA	p.R243K		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	243					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ACCGAGCCCAGATCCCGAGAC	0.567													25	19					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372970	24372970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:24372970G>A	uc002dmf.2	+	4	1934	c.734G>A	c.(733-735)CGA>CAA	p.R245Q		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	245					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CCCAGATCCCGAGACCTGTCC	0.582													15	30					0	0	1	0	0
TNRC6A	27327	broad.mit.edu	37	16	24801472	24801472	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:24801472C>T	uc002dmm.2	+	6	1623	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S	TNRC6A_uc010bxs.2_Silent_p.S250S|TNRC6A_uc010vcc.1_Silent_p.S250S|TNRC6A_uc002dmn.2_Silent_p.S250S|TNRC6A_uc002dmo.2_Silent_p.S250S	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	503	Sufficient for interaction with EIF2C1, EIF2C3 and EIF2C4.|Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		ATGGCACTTCCCTTTCTCACC	0.478													45	29					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251886	25251886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:25251886C>T	uc002dod.3	-	7	2562	c.2155G>A	c.(2155-2157)GGA>AGA	p.G719R	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.G515R	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	719					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		TGTCTAATTCCTTGAAGATTT	0.443													23	32					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147155	26147155	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:26147155G>A	uc002dof.2	+	2	1349	c.957G>A	c.(955-957)CGG>CGA	p.R319R		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	319	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TCAAAAACCGGACCCTCGGGC	0.552													51	118					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147178	26147178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:26147178C>T	uc002dof.2	+	2	1372	c.980C>T	c.(979-981)TCC>TTC	p.S327F		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	327	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		ATCGATGCTTCCTGGAGTGCC	0.542													96	71					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27456587	27456587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:27456587C>T	uc002doq.1	+	7	1008	c.775C>T	c.(775-777)CCA>TCA	p.P259S	IL21R_uc002dor.1_Missense_Mutation_p.P259S|IL21R_uc002dos.1_Missense_Mutation_p.P259S	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	259	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GAAGACCCATCCATTGTGGAG	0.552			T	BCL6	NHL								9	19					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27720136	27720136	+	Silent	SNP	C	T	T	rs151072917		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:27720136C>T	uc002dow.2	+	13	1524	c.1500C>T	c.(1498-1500)TTC>TTT	p.F500F	KIAA0556_uc002dox.1_Silent_p.F408F	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	500										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						AAGTCGAGTTCTTTGACTTGA	0.547													18	48					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28115990	28115990	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:28115990G>A	uc002dpa.1	-	21	3324	c.2823C>T	c.(2821-2823)CTC>CTT	p.L941L	XPO6_uc002dpb.1_Silent_p.L927L|XPO6_uc010vcp.1_Silent_p.L941L	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	941					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCCGGAAAAGGAGCTCAAACA	0.607													7	30					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28157510	28157510	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:28157510A>G	uc002dpa.1	-	9	1740	c.1239T>C	c.(1237-1239)GGT>GGC	p.G413G	XPO6_uc002dpb.1_Silent_p.G399G|XPO6_uc010vcp.1_Silent_p.G413G	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	413					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						AAGAGAAGTAACCTTCATGAG	0.363													40	23					0	0	1	0	0
SBK1	388228	broad.mit.edu	37	16	28331744	28331744	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:28331744C>T	uc002dpd.2	+	4	1566	c.777C>T	c.(775-777)GCC>GCT	p.A259A		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	259	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						CGTCGGGCGCCGACGCCTTCT	0.726													8	26					0	0	1	0	0
KIF22	3835	broad.mit.edu	37	16	29816468	29816468	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:29816468G>A	uc002dts.3	+	13	1947	c.1923G>A	c.(1921-1923)ACG>ACA	p.T641T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Silent_p.T573T|KIF22_uc010vdw.1_Silent_p.T573T|KIF22_uc010bzf.2_Silent_p.T587T|KIF22_uc002dtt.1_3'UTR|KIF22_uc002frc.1_RNA|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank|MAZ_uc002dtz.1_5'Flank|MAZ_uc002dua.2_5'Flank|MAZ_uc010vdy.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	641					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						AGGGCATAACGGGGAAACAGA	0.682													22	55					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29899001	29899001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:29899001C>T	uc002duq.3	-	7	1417	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.E323K|SEZ6L2_uc002dur.3_Missense_Mutation_p.E323K|SEZ6L2_uc002dus.3_Missense_Mutation_p.E279K|SEZ6L2_uc010vec.1_Missense_Mutation_p.E393K|SEZ6L2_uc010ved.1_Missense_Mutation_p.E349K	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	393	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GAGACCCTTTCAAAGTGCAGG	0.527													24	63					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29994069	29994070	+	Missense_Mutation	DNP	CC	TT	TT	rs141012429		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:29994069_29994070CC>TT	uc002dva.1	+	11	1629_1630	c.846_847CC>TT	c.(844-849)CTCCGG>CTTTGG	p.R283W	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.R283W|TAOK2_uc002dvc.1_Missense_Mutation_p.R283W|TAOK2_uc010bzm.1_Missense_Mutation_p.R283W|TAOK2_uc002dvd.1_Missense_Mutation_p.R110W	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	283					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GCTTTGTGCTCCGGGAGCGGCC	0.619													32	31					0	0	1	0	0
C16orf92	146378	broad.mit.edu	37	16	30035385	30035385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30035385C>T	uc002dvs.2	+	3	376	c.355C>T	c.(355-357)CTT>TTT	p.L119F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|C16orf92_uc002dvr.2_Missense_Mutation_p.L97F	NM_001109660	NP_001103130	Q96LL3	CP092_HUMAN	hypothetical protein LOC146378 isoform 2	119	Helical; (Potential).					integral to membrane					0						CTTCTTTCTCCTTTTCCAGTT	0.587													28	50					0	0	1	0	0
FAM57B	83723	broad.mit.edu	37	16	30040821	30040821	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30040821G>A	uc002dvt.2	-	2	479	c.141C>T	c.(139-141)GTC>GTT	p.V47V	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|FAM57B_uc002dvu.2_5'UTR	NM_031478	NP_113666	Q71RH2	FA57B_HUMAN	hypothetical protein LOC83723	47	TLC.					endoplasmic reticulum|integral to membrane					0						TGATGGCCTGGACAGAGGACA	0.587													5	20					0	0	1	0	0
ZNF48	197407	broad.mit.edu	37	16	30409820	30409820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30409820C>T	uc002dya.1	+	2	1308	c.1249C>T	c.(1249-1251)CCC>TCC	p.P417S	ZNF48_uc002dxz.1_Missense_Mutation_p.P294S	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	417	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACCTCGAAGTCCCTCACACTC	0.697													9	20					0	0	1	0	0
FBRS	64319	broad.mit.edu	37	16	30676392	30676392	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30676392C>T	uc002dzd.3	+	3	303	c.40C>T	c.(40-42)CGA>TGA	p.R14*	FBRS_uc002dzc.3_Intron	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	14										ovary(1)	1			Colorectal(24;0.103)			AGGCCTTTTCCGACATAAtgt	0.408													3	12					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30750077	30750077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30750077C>T	uc002dze.1	+	34	9101	c.8716C>T	c.(8716-8718)CCT>TCT	p.P2906S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2701S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2906	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TGTTGCAGATCCTGTCCTGGA	0.577													20	17					0	0	1	0	0
RNF40	9810	broad.mit.edu	37	16	30779804	30779804	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30779804C>A	uc002dzq.2	+	13	2055	c.1932C>A	c.(1930-1932)ACC>ACA	p.T644T	RNF40_uc010caa.2_Silent_p.T644T|RNF40_uc010cab.2_Silent_p.T544T|RNF40_uc010vfa.1_5'UTR|RNF40_uc002dzr.2_Silent_p.T644T|RNF40_uc010vfb.1_Silent_p.T336T|RNF40_uc010vfc.1_5'UTR	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	644	Potential.				histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			TGGAAGAAACCAAGCGGAAGG	0.602													15	51					1.3612e-06	1.3663e-06	1	1	0
SETD1A	9739	broad.mit.edu	37	16	30975992	30975992	+	Missense_Mutation	SNP	C	T	T	rs146035438		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30975992C>T	uc002ead.1	+	7	1615	c.929C>T	c.(928-930)TCC>TTC	p.S310F		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	310	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding	p.S310F(1)		ovary(2)|skin(1)	3						GATGCCTTTTCCCGCCGCCAC	0.522													33	48					0	0	1	0	0
SETD1A	9739	broad.mit.edu	37	16	30982813	30982813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:30982813C>T	uc002ead.1	+	13	3817	c.3131C>T	c.(3130-3132)TCC>TTC	p.S1044F		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1044	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						tcctcatcctcctcctcctcc	0.393													12	43					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31284775	31284775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:31284775C>T	uc002ebq.2	+	8	892	c.794C>T	c.(793-795)CCC>CTC	p.P265L	ITGAM_uc002ebr.2_Missense_Mutation_p.P265L|ITGAM_uc010cam.1_5'Flank	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	265	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TTTGGCGATCCCTTGGGATAT	0.502													19	25					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31332834	31332834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:31332834G>A	uc002ebq.2	+	16	1986	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	ITGAM_uc002ebr.2_Missense_Mutation_p.E631K|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Missense_Mutation_p.E36K|ITGAM_uc002ebs.1_Missense_Mutation_p.E36K	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	630	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CAATCCCAGGGAAGTGGCAAG	0.502													133	87					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31383061	31383061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:31383061C>T	uc002ebu.1	+	17	2183	c.2116C>T	c.(2116-2118)CTC>TTC	p.L706F	ITGAX_uc002ebt.2_Missense_Mutation_p.L706F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	706	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGTCCGAGTCCTCGGGCTGAA	0.632													14	28					0	0	1	0	0
ZNF267	10308	broad.mit.edu	37	16	31926743	31926743	+	Silent	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:31926743T>A	uc002ecs.3	+	4	1382	c.1173T>A	c.(1171-1173)CGT>CGA	p.R391R		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	391	C2H2-type 3.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						CTTTTACTCGTTCCTCCAATC	0.353													22	23					0	0	1	0	0
ORC6L	23594	broad.mit.edu	37	16	46731411	46731411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:46731411G>A	uc002eeh.2	+	7	733	c.673G>A	c.(673-675)GAT>AAT	p.D225N		NM_014321	NP_055136	Q9Y5N6	ORC6_HUMAN	origin recognition complex subunit 6	225					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA binding|protein binding				0		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				ACCACAGAAAGATGAAGATCT	0.343													11	3					0	0	1	0	0
PHKB	5257	broad.mit.edu	37	16	47730372	47730372	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:47730372G>A	uc002eev.3	+	29	3028	c.2976G>A	c.(2974-2976)CAG>CAA	p.Q992Q	PHKB_uc002eeu.3_Silent_p.Q985Q|PHKB_uc002eew.3_Silent_p.Q233Q	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	992					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				ATATTGACCAGCCACAGTACA	0.403													3	14					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48138177	48138177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:48138177G>A	uc002efc.1	-	20	3122	c.2776C>T	c.(2776-2778)CAC>TAC	p.H926Y	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_Intron|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	926	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TTCTCTGCGTGAAACGGCAGC	0.488													17	38					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48218400	48218400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:48218400G>A	uc002eff.1	-	22	3559	c.3209C>T	c.(3208-3210)TCC>TTC	p.S1070F	ABCC11_uc002efg.1_Missense_Mutation_p.S1070F|ABCC11_uc002efh.1_Missense_Mutation_p.S1070F|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1070	Helical; (Potential).|ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GGGGGTGGAGGAAATGCCAAA	0.532									Cerumen_Type				39	1					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48227885	48227885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:48227885C>T	uc002eff.1	-	18	2763	c.2413G>A	c.(2413-2415)GTC>ATC	p.V805I	ABCC11_uc002efg.1_Missense_Mutation_p.V805I|ABCC11_uc002efh.1_Missense_Mutation_p.V805I|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	805	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				ATGCAAGAGACCATGTAACCT	0.532									Cerumen_Type				10	14					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48242338	48242338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:48242338C>T	uc002eff.1	-	11	2028	c.1678G>A	c.(1678-1680)GAG>AAG	p.E560K	ABCC11_uc002efg.1_Missense_Mutation_p.E560K|ABCC11_uc002efh.1_Missense_Mutation_p.E560K|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	560	ABC transporter 1.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TCACTTACCTCCTCCAGGATG	0.607									Cerumen_Type				16	26					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49670875	49670875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:49670875C>T	uc002efs.2	-	5	2486	c.2188G>A	c.(2188-2190)GAC>AAC	p.D730N	ZNF423_uc010vgn.1_Missense_Mutation_p.D613N	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	730	C2H2-type 17.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ACCTTGGAGTCGAAGACCTCC	0.567													16	18					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50338452	50338452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:50338452G>A	uc002egd.1	+	10	1818	c.1550G>A	c.(1549-1551)CGG>CAG	p.R517Q	ADCY7_uc002egb.1_Missense_Mutation_p.R517Q|ADCY7_uc002egc.1_Missense_Mutation_p.R517Q	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	517	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	CCCAACGGGCGGAGGCCTAAG	0.612													21	6					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174665	51174665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:51174665C>T	uc010vgs.1	-	2	1499	c.1468G>A	c.(1468-1470)GGG>AGG	p.G490R	SALL1_uc010vgr.1_Missense_Mutation_p.G393R|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	490	C2H2-type 2.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTCAGATTCCCCTTGGTGGAG	0.517													22	29					0	0	1	0	0
CHD9	80205	broad.mit.edu	37	16	53272436	53272436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:53272436C>T	uc002ehb.2	+	11	2979	c.2815C>T	c.(2815-2817)CAT>TAT	p.H939Y	CHD9_uc002egy.2_Missense_Mutation_p.H939Y|CHD9_uc002eha.1_Missense_Mutation_p.H939Y|CHD9_uc002ehc.2_Missense_Mutation_p.H939Y|CHD9_uc002ehf.2_Missense_Mutation_p.H53Y|CHD9_uc002ehd.2_Missense_Mutation_p.H465Y|CHD9_uc002ehe.1_Missense_Mutation_p.H53Y	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	939	Helicase ATP-binding.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TGTGGTTTATCATGGGAGCCT	0.388													43	55					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55725871	55725871	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:55725871C>T	uc002eif.2	+	6	936	c.825C>T	c.(823-825)TTC>TTT	p.F275F	SLC6A2_uc010ccd.2_Silent_p.F275F|SLC6A2_uc002eig.2_Silent_p.F275F|SLC6A2_uc002eih.2_Silent_p.F275F|SLC6A2_uc002eii.2_Silent_p.F170F|SLC6A2_uc002eij.2_Intron	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	275	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	TCGTGCTGTTCGTGCTCCTGG	0.602													14	15					0	0	1	0	0
CES1	1066	broad.mit.edu	37	16	55860149	55860149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:55860149C>T	uc002eim.2	-	3	424	c.316G>A	c.(316-318)GAG>AAG	p.E106K	CES1_uc002eil.2_Missense_Mutation_p.E107K|CES1_uc002ein.2_Missense_Mutation_p.E106K	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	106				KEN -> PAD (in Ref. 14; AA sequence).	response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	GGAATGTTCTCCTTTCGGTTT	0.493													43	168					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57003319	57003319	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:57003319C>T	uc002eki.2	+	3	312	c.255C>T	c.(253-255)TCC>TCT	p.S85S	CETP_uc002ekj.2_Silent_p.S85S	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	85					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						GCCACTTGTCCATCGCCAGCA	0.542													29	50					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57005247	57005247	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:57005247C>T	uc002eki.2	+	7	669	c.612C>T	c.(610-612)ATC>ATT	p.I204I	CETP_uc002ekj.2_Silent_p.I204I	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	204					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						GCAAAGAGATCAACGTCATCT	0.562													115	13					0	0	1	0	0
GPR114	221188	broad.mit.edu	37	16	57608917	57608917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:57608917G>A	uc002elx.3	+	11	1484	c.1399G>A	c.(1399-1401)GGA>AGA	p.G467R	GPR114_uc010vhr.1_Nonsense_Mutation_p.W427*|GPR114_uc002ely.2_Missense_Mutation_p.G467R	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	467	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						CGTGCTGCTGGGAACCACCTG	0.627													8	10					0	0	1	0	0
GPR56	9289	broad.mit.edu	37	16	57693312	57693313	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:57693312_57693313CC>TT	uc002emb.2	+	12	1584_1585	c.1292_1293CC>TT	c.(1291-1293)CCC>CTT	p.P431L	GPR56_uc002elz.1_Missense_Mutation_p.P261L|GPR56_uc002ema.1_Missense_Mutation_p.P256L|GPR56_uc002emc.2_Intron|GPR56_uc002emf.2_Intron|GPR56_uc010vhs.1_Missense_Mutation_p.P431L|GPR56_uc002emd.2_Intron|GPR56_uc002eme.2_Intron|GPR56_uc010vht.1_Intron|GPR56_uc002emg.3_Intron|GPR56_uc010vhu.1_Intron	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	431	Cytoplasmic (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						ACCAGGGTGCCCCTGCCGTGCA	0.535													11	34					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57756644	57756644	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:57756644G>A	uc002emi.2	+	10	1388	c.1299G>A	c.(1297-1299)CCG>CCA	p.P433P	CCDC135_uc002emj.2_Silent_p.P433P|CCDC135_uc002emk.2_Silent_p.P368P	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	433						cytoplasm				central_nervous_system(1)	1						CCCGCTGCCCGAACGGGAAGA	0.582													14	21					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314472	58314472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:58314472C>T	uc002enf.2	-	7	1239	c.844G>A	c.(844-846)GAA>AAA	p.E282K	PRSS54_uc002eng.2_Missense_Mutation_p.E282K|PRSS54_uc010vie.1_Missense_Mutation_p.E183K|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	282					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						ATCAACTTTTCCCAGTGGTGG	0.517													13	18					0	0	1	0	0
TK2	7084	broad.mit.edu	37	16	66545943	66545943	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:66545943C>T	uc002eos.2	-	10	1077	c.852G>A	c.(850-852)GAG>GAA	p.E284E	TK2_uc010vip.1_Silent_p.E145E|TK2_uc002eor.2_Silent_p.E211E|TK2_uc010cdq.2_3'UTR|TK2_uc010cdr.2_Silent_p.E193E|TK2_uc010viq.1_Silent_p.E266E|TK2_uc010vir.1_Silent_p.E259E	NM_004614	NP_004605	O00142	KITM_HUMAN	thymidine kinase 2, mitochondrial	242					pyrimidine base metabolic process|pyrimidine nucleoside salvage	mitochondrial matrix	ATP binding|phosphotransferase activity, alcohol group as acceptor|thymidine kinase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0736)|Epithelial(162;0.237)		CTAACATCCTCTCCATGTGGT	0.483													12	22					0	0	1	0	0
CES2	8824	broad.mit.edu	37	16	66975531	66975531	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:66975531C>T	uc002eqr.2	+	7	2230	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	CES2_uc002eqq.2_Silent_p.F410F|CES2_uc002eqs.2_Silent_p.F253F	NM_003869	NP_003860	O00748	EST2_HUMAN	carboxylesterase 2 isoform 1	346					catabolic process	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0663)|Epithelial(162;0.166)		ACAATGAATTCGGCTGGCTCA	0.607													15	15					0	0	1	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67322425	67322425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:67322425C>T	uc002eso.3	+	20	6023	c.3488C>T	c.(3487-3489)CCA>CTA	p.P1163L	PLEKHG4_uc002esp.3_Missense_Mutation_p.P970L|PLEKHG4_uc002esq.3_Missense_Mutation_p.P1163L|PLEKHG4_uc010cef.2_Missense_Mutation_p.P1163L|PLEKHG4_uc002ess.3_Missense_Mutation_p.P1163L|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P1082L	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	1163					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		TCCCAATGCCCATCAGCCAGT	0.627													22	46					0	0	1	0	0
ZFP90	146198	broad.mit.edu	37	16	68598512	68598512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:68598512C>T	uc010cff.2	+	5	2114	c.1822C>T	c.(1822-1824)CCC>TCC	p.P608S	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.P608S|ZFP90_uc002ewe.2_Missense_Mutation_p.P608S	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	608					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		TGGAGAAAAACCCTATTCTTG	0.398													27	55					0	0	1	0	0
CDH1	999	broad.mit.edu	37	16	68844210	68844210	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:68844210C>T	uc002ewg.1	+	6	922	c.798C>T	c.(796-798)GTC>GTT	p.V266V	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Silent_p.V266V	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	266	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding	p.?(2)		breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		CCCAGGAGGTCTTTAAGGGGT	0.458			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				54	9					0	0	1	0	0
TMCO7	79613	broad.mit.edu	37	16	68934380	68934380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:68934380C>T	uc002ewi.3	+	8	1433	c.1421C>T	c.(1420-1422)TCC>TTC	p.S474F		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	474	Helical; (Potential).					integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		TTGATGGATTCCCTGCTTCCA	0.428													60	16					0	0	1	0	0
TMED6	146456	broad.mit.edu	37	16	69385549	69385549	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:69385549G>A	uc002exc.1	-	1	141	c.108C>T	c.(106-108)TTC>TTT	p.F36F		NM_144676	NP_653277	Q8WW62	TMED6_HUMAN	transmembrane emp24 protein transport domain	36	Lumenal (Potential).				transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1						CAGCTCCACGGAAGAGTGGCT	0.517													13	34					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70895992	70895992	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:70895992G>A	uc002ezr.2	-	69	11861	c.11733C>T	c.(11731-11733)TCC>TCT	p.S3911S	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3912										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTCCAACGGGGAGAATTTTA	0.537													8	3					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70916794	70916794	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:70916794G>A	uc002ezr.2	-	60	10109	c.9981C>T	c.(9979-9981)TTC>TTT	p.F3327F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3328										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTCGGTCACGAAGGCTGGGG	0.507													38	7					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71212857	71212857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:71212857G>A	uc002ezr.2	-	4	483	c.355C>T	c.(355-357)CCA>TCA	p.P119S	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.P119S|HYDIN_uc010vmc.1_Missense_Mutation_p.P136S|HYDIN_uc010vmd.1_Missense_Mutation_p.P146S|HYDIN_uc002ezw.3_Missense_Mutation_p.P136S	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	119										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AAAATCAGTGGAACTTCATAG	0.393													31	34					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184533	72184533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:72184533C>T	uc002fcc.3	-	5	782	c.610G>A	c.(610-612)GGG>AGG	p.G204R	PMFBP1_uc002fcd.2_Missense_Mutation_p.G204R|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.G59R	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	204	Potential.									ovary(2)	2		Ovarian(137;0.179)				CCGAGTTCCCCCTGCAACATC	0.527													66	13					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72993058	72993058	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:72993058G>A	uc002fck.2	-	2	1660	c.987C>T	c.(985-987)ATC>ATT	p.I329I	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	329					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TGTCTTTGCCGATCCCTTGGA	0.473													16	24					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	74425463	74425463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:74425463C>T	uc010vmt.1	+	6	635	c.634C>T	c.(634-636)CCC>TCC	p.P212S						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		TCTCCTTCATCCCCTTCCACC	0.498													24	55					0	0	1	0	0
GLG1	2734	broad.mit.edu	37	16	74497348	74497348	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:74497348G>A	uc002fcy.3	-	20	2747	c.2697C>T	c.(2695-2697)ACC>ACT	p.T899T	GLG1_uc002fcx.2_Silent_p.T899T|GLG1_uc002fcw.3_Silent_p.T888T|GLG1_uc002fcz.3_Silent_p.T316T	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	899	Cys-rich GLG1 13.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						ACTGCAACATGGTTTTAGAAT	0.403													13	13					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74729448	74729448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:74729448C>T	uc002fdb.2	-	2	649	c.208G>A	c.(208-210)GAG>AAG	p.E70K	MLKL_uc002fdc.2_Missense_Mutation_p.E70K	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	70							ATP binding|protein binding|protein kinase activity			stomach(2)	2						TTAGCCTCCTCCAGGGCAGCC	0.507													18	15					0	0	1	0	0
CTRB2	440387	broad.mit.edu	37	16	75238062	75238062	+	Missense_Mutation	SNP	G	T	T	rs34824152		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:75238062G>T	uc002fdr.2	-	7	822	c.789C>A	c.(787-789)AAC>AAA	p.N263K		NM_001025200	NP_001020371	Q6GPI1	CTRB2_HUMAN	chymotrypsin B2 precursor	263					digestion|proteolysis	extracellular space	serine-type endopeptidase activity				0						TGCGGGCTCAGTTGGCGGCCA	0.607													30	8					6.50621e-10	6.54898e-10	1	1	0
BCAR1	9564	broad.mit.edu	37	16	75263823	75263823	+	Silent	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:75263823T>G	uc002fdv.2	-	7	2322	c.2199A>C	c.(2197-2199)ACA>ACC	p.T733T	BCAR1_uc002fdt.2_Silent_p.T186T|BCAR1_uc002fdu.2_Silent_p.T523T|BCAR1_uc010cgu.2_Silent_p.T722T|BCAR1_uc010vna.1_Silent_p.T731T|BCAR1_uc010vnb.1_Silent_p.T779T|BCAR1_uc002fdw.2_Silent_p.T733T|BCAR1_uc010vnc.1_Silent_p.T585T|BCAR1_uc010vnd.1_Silent_p.T751T|BCAR1_uc002fdx.2_Silent_p.T751T	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	733					actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCAGGCCGCCTGTTCGCCCCG	0.642													45	2					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76481970	76481970	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:76481970C>T	uc002feu.1	+	7	985	c.600C>T	c.(598-600)TCC>TCT	p.S200S	CNTNAP4_uc002fev.1_Silent_p.S112S|CNTNAP4_uc010chb.1_Silent_p.S175S|CNTNAP4_uc002fex.1_Silent_p.S203S|CNTNAP4_uc002few.2_Silent_p.S175S	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	200	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ATCAAAAATCCCTGAGCCCAA	0.383													34	3					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76495858	76495858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:76495858G>A	uc002feu.1	+	11	1724	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	CNTNAP4_uc002fev.1_Missense_Mutation_p.E311K|CNTNAP4_uc010chb.1_Missense_Mutation_p.E374K|CNTNAP4_uc002fex.1_Missense_Mutation_p.E450K|CNTNAP4_uc002few.2_Missense_Mutation_p.E422K	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	447	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CCTAGGTGTCGAATTAAATGA	0.443													28	41					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77328972	77328972	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:77328972G>T	uc002ffc.3	-	19	3273	c.2854C>A	c.(2854-2856)CAG>AAG	p.Q952K	ADAMTS18_uc010chc.1_Missense_Mutation_p.Q540K	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	952	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTTCGGCTCTGCTGGCCTCCA	0.498													8	12					0.0581538	0.0581755	1	1	0
VAT1L	57687	broad.mit.edu	37	16	77850940	77850940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:77850940G>A	uc002ffg.1	+	2	453	c.356G>A	c.(355-357)GGA>GAA	p.G119E		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	119							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						AGCGTGAAAGGATATGAGGTA	0.428													18	21					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064408	78064408	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:78064408C>T	uc002ffh.3	+	3	345	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	88	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						TGAAGCATTTCCATGAGGCCA	0.448													33	7					0	0	1	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583473	80583473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:80583473C>T	uc002ffo.2	+	5	292	c.172C>T	c.(172-174)CGT>TGT	p.R58C	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	58					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						AAGCACAGTTCGTGATATTGA	0.403													7	10					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81228577	81228577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:81228577C>T	uc002fgh.1	-	8	1597	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K	PKD1L2_uc002fgj.2_Missense_Mutation_p.E533K	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	533	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCCCGATTTCCAAACTCAGG	0.493													26	3					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83636148	83636148	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:83636148G>A	uc002fgx.2	+	8	1170	c.1050G>A	c.(1048-1050)ACG>ACA	p.T350T	CDH13_uc010vns.1_Silent_p.T397T|CDH13_uc010vnt.1_Silent_p.T96T|CDH13_uc010vnu.1_Silent_p.T311T	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	350	Cadherin 2.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CCACAGCCACGATCATGATCG	0.463													46	65					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83781740	83781740	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:83781740T>C	uc002fgx.2	+	11	1686	c.1566T>C	c.(1564-1566)GGT>GGC	p.G522G	CDH13_uc010vns.1_Silent_p.G569G|CDH13_uc010vnt.1_Silent_p.G268G|CDH13_uc010vnu.1_Silent_p.G483G	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	522	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		ACCCAGCAGGTTGGCTGAATA	0.468													83	14					0	0	1	0	0
OSGIN1	29948	broad.mit.edu	37	16	83992993	83992993	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:83992993C>T	uc002fha.2	+	4	828	c.445C>T	c.(445-447)CTG>TTG	p.L149L	OSGIN1_uc002fhb.2_Silent_p.L66L|OSGIN1_uc002fhc.2_Silent_p.L66L	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	149					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						GGTCTCCATCCTGGACCAGGT	0.607													6	8					0	0	1	0	0
NECAB2	54550	broad.mit.edu	37	16	84028020	84028020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:84028020C>T	uc002fhd.2	+	7	727	c.710C>T	c.(709-711)CCA>CTA	p.P237L	NECAB2_uc002fhe.2_Missense_Mutation_p.P154L	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	237					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						AAGACCCTTCCATCTGGTGAG	0.617													8	13					0	0	1	0	0
ADAD2	161931	broad.mit.edu	37	16	84228901	84228901	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:84228901G>A	uc002fhr.2	+	5	848	c.734_splice	c.e5-1	p.E245_splice	ADAD2_uc002fhq.2_Missense_Mutation_p.E327K|uc002fhs.1_5'UTR	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform						RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CTCCTGCACAGAGATCCCGCG	0.697													6	5					0	0	1	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84906636	84906636	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:84906636C>T	uc010voh.1	+	10	1247	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.I339I|CRISPLD2_uc002fim.2_Silent_p.I340I|CRISPLD2_uc002fin.3_Silent_p.I340I	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	340	LCCL 1.					extracellular region|transport vesicle					0						ACTACGGGATCCTGGATGACA	0.567													69	10					0	0	1	0	0
C16orf7	9605	broad.mit.edu	37	16	89785453	89785453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr16:89785453C>T	uc002fom.1	-	2	282	c.157G>A	c.(157-159)GAA>AAA	p.E53K	C16orf7_uc002fol.1_5'UTR|ZNF276_uc010ciq.2_5'Flank|ZNF276_uc002fop.2_5'Flank|ZNF276_uc002foq.3_5'Flank|ZNF276_uc010cir.2_5'Flank|ZNF276_uc002for.3_5'Flank|ZNF276_uc010cis.2_5'Flank|ZNF276_uc002fos.3_5'Flank|ZNF276_uc002fot.3_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	53					ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GTTTCCACTTCTTCTAGTAAC	0.343													56	5					0	0	1	0	0
CRK	1398	broad.mit.edu	37	17	1340260	1340260	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:1340260T>A	uc002fsl.2	-	2	564	c.431A>T	c.(430-432)AAT>ATT	p.N144I	CRK_uc002fsm.2_Missense_Mutation_p.N144I	NM_016823	NP_058431	P46108	CRK_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	144	SH3 1.				actin cytoskeleton organization|activation of MAPKK activity|blood coagulation|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of transcription from RNA polymerase II promoter	cytosol|endosome|nucleus|plasma membrane	protein binding|SH2 domain binding			lung(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (25;0.083)		ATCATTCCCATTAAAGTCAAA	0.507													23	69					0	0	1	0	0
SCARF1	8578	broad.mit.edu	37	17	1538393	1538393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:1538393C>T	uc002fsz.1	-	11	2202	c.2152G>A	c.(2152-2154)GGC>AGC	p.G718S	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.G632S	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	718	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCCGCCTGGCCTTTCTGGAAG	0.637													22	25					0	0	1	0	0
SMYD4	114826	broad.mit.edu	37	17	1686346	1686346	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:1686346G>A	uc002ftm.3	-	10	2412	c.2244C>T	c.(2242-2244)GCC>GCT	p.A748A	SMYD4_uc002ftn.1_Silent_p.A603A	NM_052928	NP_443160	Q8IYR2	SMYD4_HUMAN	SET and MYND domain containing 4	748							zinc ion binding			skin(3)|kidney(2)	5						AAAAGATCTGGGCCAATTTGA	0.502													31	39					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2075961	2075961	+	Silent	SNP	G	A	A	rs145807526		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:2075961G>A	uc002fub.1	-	13	3403	c.3348C>T	c.(3346-3348)ACC>ACT	p.T1116T	SMG6_uc010vqv.1_Silent_p.T208T	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	1116					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						CCTTATCCGAGGTTTTCTCCA	0.527													17	65					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2089982	2089982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:2089982G>A	uc002fub.1	-	12	3185	c.3130C>T	c.(3130-3132)CCC>TCC	p.P1044S	SMG6_uc010vqv.1_Missense_Mutation_p.P136S	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	1044					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						AGGGATGTGGGAGGAGGATTC	0.592													15	30					0	0	1	0	0
KIAA0664	23277	broad.mit.edu	37	17	2598251	2598251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:2598251C>T	uc002fuy.1	-	16	2721	c.2635G>A	c.(2635-2637)GGG>AGG	p.G879R	KIAA0664_uc002fux.1_Missense_Mutation_p.G812R|KIAA0664_uc010ckc.1_5'UTR	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	879							binding			breast(2)	2						TCTGCAGCCCCCGGGGGCCGG	0.602													5	17					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2883593	2883593	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:2883593G>A	uc010ckd.2	+	9	699	c.609G>A	c.(607-609)AAG>AAA	p.K203K	RAP1GAP2_uc010cke.2_Silent_p.K188K	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	203					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CCAAACTGAAGACGGTACATG	0.418													11	64					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2995836	2995836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:2995836G>A	uc010vrb.1	-	1	455	c.455C>T	c.(454-456)TCC>TTC	p.S152F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	152	Helical; Name=4; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						ATAGAGGACGGATAGGACCCA	0.507													10	56					0	0	1	0	0
OR1G1	8390	broad.mit.edu	37	17	3030189	3030189	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3030189C>T	uc002fvc.1	-	1	657	c.657G>A	c.(655-657)ACG>ACA	p.T219T		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAAAACGTTCGTGTAAGAGA	0.512													17	67					0	0	1	0	0
OR1G1	8390	broad.mit.edu	37	17	3030272	3030272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3030272G>A	uc002fvc.1	-	1	574	c.574C>T	c.(574-576)CCC>TCC	p.P192S		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGTGAAGGGGTCTGTGCAG	0.493													78	65					0	0	1	0	0
OR1A1	8383	broad.mit.edu	37	17	3119791	3119791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3119791C>T	uc010vrc.1	+	1	877	c.877C>T	c.(877-879)CGG>TGG	p.R293W		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGAGAAATCGGGACATGAA	0.468													52	66					0	0	1	0	0
OR3A2	4995	broad.mit.edu	37	17	3181683	3181683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3181683C>T	uc002fvg.2	-	1	586	c.547G>A	c.(547-549)GTC>ATC	p.V183I		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	183	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AAGTGATTGACCTCATTGGGG	0.562													18	104					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3213778	3213778	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3213778C>T	uc002fvi.2	+	1	240	c.174C>T	c.(172-174)CTC>CTT	p.L58L		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						AAACCAAACTCCACAGCCCCA	0.532													19	69					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3214318	3214318	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:3214318G>A	uc002fvi.2	+	1	780	c.714G>A	c.(712-714)AAG>AAA	p.K238K		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						AGGGCAGAAAGAAAGCCTTCT	0.577													48	69					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4536769	4536769	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:4536769G>A	uc002fyh.2	-	9	1202	c.1188C>T	c.(1186-1188)ACC>ACT	p.T396T	ALOX15_uc010vsd.1_Silent_p.T357T|ALOX15_uc010vse.1_Silent_p.T418T	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	396	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	TAATTTCCAGGGTGTATCGCA	0.517													21	70					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4646617	4646617	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:4646617C>T	uc002fyt.2	+	6	1203	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	ZMYND15_uc002fyv.2_Silent_p.F388F|ZMYND15_uc002fyu.2_Silent_p.F388F	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	388							zinc ion binding				0						GTGAAACCTTCAACAAAGAGG	0.512													116	47					0	0	1	0	0
PLD2	5338	broad.mit.edu	37	17	4713310	4713310	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:4713310C>T	uc002fzc.2	+	9	947	c.846C>T	c.(844-846)ATC>ATT	p.I282I	PLD2_uc010vsj.1_Silent_p.I139I|PLD2_uc002fzd.2_Silent_p.I282I	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	282	PH.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	GCGTGCGGATCGATACCTCCC	0.607													13	35					0	0	1	0	0
CHRNE	1145	broad.mit.edu	37	17	4804298	4804298	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:4804298G>A	uc002fzk.1	-	7	800	c.789C>T	c.(787-789)TTC>TTT	p.F263F	C17orf107_uc002fzl.3_3'UTR	NM_000080	NP_000071	Q04844	ACHE_HUMAN	nicotinic acetylcholine receptor epsilon	263	Helical; (Potential).				muscle contraction|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GCGCCGGCAGGAAGTAGGCGA	0.657													22	59					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5073877	5073878	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:5073877_5073878CC>TT	uc002gau.1	+	36	5851_5852	c.3621_3622CC>TT	c.(3619-3624)CTCCGG>CTTTGG	p.R1208W	USP6_uc002gav.1_Missense_Mutation_p.R1208W|USP6_uc010ckz.1_Missense_Mutation_p.R891W	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1208					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AAGGGAGGCTCCGGCTGCCCCA	0.53			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								37	12					0	0	1	0	0
DHX33	56919	broad.mit.edu	37	17	5353685	5353685	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:5353685G>A	uc002gca.2	-	10	1568	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	DHX33_uc002gbz.2_Silent_p.I293I|DHX33_uc002gcb.2_Silent_p.I349I|DHX33_uc010clf.2_Silent_p.I298I	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	522						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						CAATGGTCAGGATCTCCTCTG	0.502													39	139					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5485271	5485271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:5485271C>T	uc002gci.2	-	3	1115	c.560G>A	c.(559-561)GGA>GAA	p.G187E	NLRP1_uc002gcg.1_Missense_Mutation_p.G187E|NLRP1_uc002gck.2_Missense_Mutation_p.G187E|NLRP1_uc002gcj.2_Missense_Mutation_p.G187E|NLRP1_uc002gcl.2_Missense_Mutation_p.G187E|NLRP1_uc002gch.3_Missense_Mutation_p.G187E|NLRP1_uc010clh.2_Missense_Mutation_p.G187E	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	187					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				AGGTGGGGATCCCCAGCTCCC	0.597													22	58					0	0	1	0	0
WSCD1	23302	broad.mit.edu	37	17	5984158	5984158	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:5984158G>A	uc010cli.2	+	2	559	c.180G>A	c.(178-180)GTG>GTA	p.V60V	WSCD1_uc002gcn.2_Silent_p.V60V|WSCD1_uc002gco.2_Silent_p.V60V|WSCD1_uc010clj.2_5'UTR	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	60						integral to membrane	sulfotransferase activity				0						TGGCCGCCGTGGCGCTGGGCG	0.706													15	2					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6358673	6358673	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:6358673G>A	uc002gdd.3	-	20	3061	c.2910C>T	c.(2908-2910)TTC>TTT	p.F970F	PITPNM3_uc010cln.2_Silent_p.F934F|PITPNM3_uc010clm.2_Silent_p.F453F|PITPNM3_uc002gdc.3_Silent_p.F561F	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	970					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		GCACCGACTCGAACTTGGGGG	0.741													3	14					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6428719	6428719	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:6428719G>A	uc002gdd.3	-	3	334	c.183C>T	c.(181-183)CTC>CTT	p.L61L	PITPNM3_uc010cln.2_Intron	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	61					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		TCTGCTCCACGAGGTCATTGG	0.557													58	71					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7193348	7193348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7193348C>T	uc002gfq.2	-	6	844	c.787G>A	c.(787-789)GGG>AGG	p.G263R		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	263	Pro-rich.|Required for mRNA-binding.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						TGTTGGTGCCCCTCCAATGGG	0.637													34	83					0	0	1	0	0
EIF5A	1984	broad.mit.edu	37	17	7213002	7213002	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7213002C>T	uc010vtv.1	+	2	285	c.48C>T	c.(46-48)GCC>GCT	p.A16A	EIF5A_uc002gfr.2_Silent_p.A46A|EIF5A_uc010vtu.1_Missense_Mutation_p.P6L|EIF5A_uc002gft.2_Silent_p.A16A|EIF5A_uc002gfu.2_Silent_p.A16A	NM_001970	NP_001961	P63241	IF5A1_HUMAN	eukaryotic translation initiation factor 5A	16					induction of apoptosis|mRNA export from nucleus|peptidyl-lysine modification to hypusine|positive regulation of cell proliferation|positive regulation of translational elongation|positive regulation of translational termination|post-translational protein modification|protein export from nucleus|translational frameshifting|transmembrane transport	annulate lamellae|cytosol|endoplasmic reticulum membrane|nuclear pore	protein N-terminus binding|ribosome binding|translation elongation factor activity|U6 snRNA binding				0						GGGCCTCAGCCACCTTCCCAA	0.493													181	54					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7220546	7220546	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7220546C>G	uc002gga.1	-	28	4469	c.4462G>C	c.(4462-4464)GAG>CAG	p.E1488Q	GPS2_uc002gfv.1_5'Flank|GPS2_uc002gfw.1_5'Flank|GPS2_uc002gfx.1_5'Flank|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Missense_Mutation_p.E1486Q	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1488							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCCAGGGTCTCCGCCCCAGCA	0.642													10	42					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7228681	7228681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7228681C>T	uc002gga.1	-	8	1485	c.1478G>A	c.(1477-1479)CGA>CAA	p.R493Q	NEURL4_uc002ggb.1_Missense_Mutation_p.R493Q|NEURL4_uc002ggc.1_5'UTR	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	493							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCGTTGTTTCGGCGGAGACG	0.642													26	55					0	0	1	0	0
FGF11	2256	broad.mit.edu	37	17	7346000	7346000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7346000C>T	uc002ggz.2	+	4	747	c.496C>T	c.(496-498)CGT>TGT	p.R166C	FGF11_uc010vtw.1_3'UTR|FGF11_uc010cmi.2_Missense_Mutation_p.R42C|FGF11_uc010vtx.1_Missense_Mutation_p.R107C|FGF11_uc002gha.3_Missense_Mutation_p.R42C|CHRNB1_uc002ghb.2_5'Flank|CHRNB1_uc010vty.1_5'Flank	NM_004112	NP_004103	Q92914	FGF11_HUMAN	fibroblast growth factor 11	166					cell-cell signaling|nervous system development|signal transduction		growth factor activity				0		Prostate(122;0.157)				CCGCCAGCGTCGTTCTGGCCG	0.552													69	307					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7402425	7402425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7402425C>T	uc002ghf.3	+	9	1637	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	POLR2A_uc002ghe.2_Missense_Mutation_p.S468F	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	468					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CACAAAATGTCCATGATGGGG	0.532													50	125					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7411738	7411738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7411738C>T	uc002ghf.3	+	20	3643	c.3409C>T	c.(3409-3411)CCT>TCT	p.P1137S		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1137					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				GCCAAAGACTCCTTCGCTTAC	0.522													4	11					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7755556	7755556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7755556G>A	uc002giw.1	+	19	4746	c.4370G>A	c.(4369-4371)CGA>CAA	p.R1457Q	KDM6B_uc002gix.2_Missense_Mutation_p.R759Q|TMEM88_uc002giy.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	1457	JmjC.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TTCGTGCAGCGACCCGGAGAC	0.612											OREG0024145	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	30					0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7798689	7798689	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7798689C>T	uc002gje.2	+	10	1686	c.1536C>T	c.(1534-1536)ATC>ATT	p.I512I	CHD3_uc002gjd.2_Silent_p.I571I|CHD3_uc002gjf.2_Silent_p.I512I|CHD3_uc002gjg.1_Silent_p.I340I	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	512	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				TGCAGAAGATCCTACATTGGC	0.557													25	97					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7907264	7907264	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7907264C>T	uc002gjt.2	+	3	890	c.816C>T	c.(814-816)TCC>TCT	p.S272S		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	272	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				CCGATGGCTCCCTGGTCTTCC	0.677													32	92					0	0	1	0	0
ALOX15B	247	broad.mit.edu	37	17	7948224	7948224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7948224C>T	uc002gju.2	+	6	870	c.754C>T	c.(754-756)CGC>TGC	p.R252C	ALOX15B_uc002gjv.2_Missense_Mutation_p.R252C|ALOX15B_uc002gjw.2_Missense_Mutation_p.R252C|ALOX15B_uc010vun.1_Missense_Mutation_p.R252C|ALOX15B_uc010cnp.2_Missense_Mutation_p.R58C	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	252	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						TGTCCTGATCCGCCGCTGTCA	0.612													22	29					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7984079	7984079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:7984079C>T	uc002gjy.1	-	5	808	c.547G>A	c.(547-549)GGA>AGA	p.G183R	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	183	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						ATTGGGAATCCCGGAATATAG	0.602										Multiple Myeloma(8;0.094)	OREG0024153	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	95					0	0	1	0	0
PIK3R6	146850	broad.mit.edu	37	17	8741159	8741159	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:8741159G>A	uc002glq.1	-	5	459	c.219C>T	c.(217-219)ATC>ATT	p.I73I	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	73					platelet activation	cytosol					0						GCAAGGGAATGATGACATGCC	0.572													12	51					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10212947	10212947	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10212947C>T	uc002gmk.1	-	34	4947	c.4857G>A	c.(4855-4857)AAG>AAA	p.K1619K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1619	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CCATCTTCTTCTTTAGCCTCA	0.582													4	13					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10219109	10219109	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10219109C>T	uc002gmk.1	-	29	3975	c.3885G>A	c.(3883-3885)GTG>GTA	p.V1295V		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1295	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CCTTCTCTTCCACTCGGTGGC	0.577													19	48					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10247409	10247409	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10247409G>A	uc002gmk.1	-	16	1692	c.1602C>T	c.(1600-1602)TCC>TCT	p.S534S	MYH13_uc010vvf.1_Silent_p.S209S	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	534	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CTTCCAGGATGGAGAAGATGC	0.458													64	29					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10263382	10263382	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10263382T>C	uc002gmk.1	-	7	630	c.540A>G	c.(538-540)GAA>GAG	p.E180E		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	180	Myosin head-like.|ATP (Potential).				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CAGCCCCGGATTCTCCGCTGC	0.483													8	38					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10265528	10265528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10265528C>T	uc002gmk.1	-	5	502	c.412G>A	c.(412-414)GAG>AAG	p.E138K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	138	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCACCACCTCGGGCTTGTAC	0.537													82	36					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10265785	10265785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10265785C>T	uc002gmk.1	-	4	330	c.240G>A	c.(238-240)ATG>ATA	p.M80I		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	80	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TGGGAGGGTTCATGGGGAAGA	0.483													30	89					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10315753	10315753	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10315753C>T	uc002gmm.2	-	14	1445	c.1350G>A	c.(1348-1350)CTG>CTA	p.L450L	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	450	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCTTGGTGTCCAGCTGCTGGT	0.488									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				63	156					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10370002	10370002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10370002C>T	uc002gmn.2	-	3	172	c.61G>A	c.(61-63)GAA>AAA	p.E21K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	21	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CGCTCCTTTTCAGACTTTCGG	0.483													74	37					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10399779	10399779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10399779C>T	uc002gmo.2	-	34	4838	c.4744G>A	c.(4744-4746)GAA>AAA	p.E1582K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1582	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCATCTTTTTCAGCAATTTTC	0.448													28	98					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404792	10404792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10404792C>T	uc002gmo.2	-	27	3467	c.3373G>A	c.(3373-3375)GAA>AAA	p.E1125K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1125	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCCTCGATTTCCTCCTCCAGC	0.542													33	13					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404958	10404958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10404958C>T	uc002gmo.2	-	26	3395	c.3301G>A	c.(3301-3303)GAA>AAA	p.E1101K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1101	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						AGGGCTTGTTCATCTTCAATC	0.378													38	17					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10408246	10408246	+	Missense_Mutation	SNP	C	T	T	rs112853460		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10408246C>T	uc002gmo.2	-	22	2666	c.2572G>A	c.(2572-2574)GAA>AAA	p.E858K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	858	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCAAATTCTTCCTTCATGTTG	0.423													20	92					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10411972	10411972	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10411972G>A	uc002gmo.2	-	16	1699	c.1605C>T	c.(1603-1605)TCC>TCT	p.S535S	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	535	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTCCAGGATGGAGAAGATGC	0.393													53	26					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10431132	10431132	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10431132C>T	uc010coi.2	-	28	3932	c.3804G>A	c.(3802-3804)AAG>AAA	p.K1268K	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.K1268K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1268	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTCCTCTTCCTTTGATTTCA	0.483													37	49					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10432708	10432709	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10432708_10432709CT>TA	uc010coi.2	-	25	3335_3336	c.3207_3208AG>TA	c.(3205-3210)CAAGAA>CATAAA	p.1069_1070QE>HK	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.1069_1070QE>HK|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1069_1070	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ATTATGGATTCTTGGGCCAACT	0.376													17	56					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10433391	10433391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10433391C>T	uc010coi.2	-	23	2826	c.2698G>A	c.(2698-2700)GAA>AAA	p.E900K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E900K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	900	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CCTTCGGCTTCCTTAAGTTGG	0.388													22	76					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10450895	10450895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10450895G>A	uc010coi.2	-	4	373	c.245C>T	c.(244-246)CCT>CTT	p.P82L	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.P82L|MYH2_uc010coj.2_Missense_Mutation_p.P82L	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	82	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ATATTTGGGAGGGTTCATGGG	0.438													30	100					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10451065	10451065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:10451065C>T	uc010coi.2	-	3	301	c.173G>A	c.(172-174)GGA>GAA	p.G58E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G58E|MYH2_uc010coj.2_Missense_Mutation_p.G58E	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	58	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CGTCACTTTTCCTCCTTCTCT	0.463													32	107					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11568150	11568150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11568150G>A	uc002gne.2	+	15	2664	c.2596G>A	c.(2596-2598)GAA>AAA	p.E866K	DNAH9_uc010coo.2_Missense_Mutation_p.E160K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	866	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCTTTTATAGGAAAACCTGGG	0.338													18	24					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11592934	11592934	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11592934C>T	uc002gne.2	+	20	3863	c.3795C>T	c.(3793-3795)ATC>ATT	p.I1265I	DNAH9_uc010coo.2_Silent_p.I559I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1265	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACATCGAGATCCAGCAGATGG	0.498													22	82					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11648297	11648297	+	Missense_Mutation	SNP	C	T	T	rs149674795		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11648297C>T	uc002gne.2	+	31	6363	c.6295C>T	c.(6295-6297)CCC>TCC	p.P2099S	DNAH9_uc010coo.2_Missense_Mutation_p.P1393S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2099					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.P2099S(1)		skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGACCTCTTTCCCGCCCTGGA	0.557													47	16					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11666907	11666907	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11666907C>T	uc002gne.2	+	36	7214	c.7146C>T	c.(7144-7146)TTC>TTT	p.F2382F	DNAH9_uc010coo.2_Silent_p.F1676F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2382					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCTGGGCTTTCGGCGGAGCAA	0.468													18	18					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11713620	11713620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11713620C>T	uc002gne.2	+	45	8709	c.8641C>T	c.(8641-8643)CTC>TTC	p.L2881F	DNAH9_uc010coo.2_Missense_Mutation_p.L2175F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2881	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CACAGTGTTTCTCATGACTGA	0.453													17	76					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11713671	11713671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11713671G>A	uc002gne.2	+	45	8760	c.8692G>A	c.(8692-8694)GAT>AAT	p.D2898N	DNAH9_uc010coo.2_Missense_Mutation_p.D2192N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2898	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCTCATCAATGATCTTTTGGC	0.468													15	69					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11774974	11774974	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11774974G>A	uc002gne.2	+	52	10181	c.10113G>A	c.(10111-10113)CAG>CAA	p.Q3371Q	DNAH9_uc010coo.2_Silent_p.Q2665Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3371					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACTTCAAACAGCAGGAAAGGA	0.478													89	45					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11833315	11833315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11833315C>T	uc002gne.2	+	63	12078	c.12010C>T	c.(12010-12012)CCC>TCC	p.P4004S	DNAH9_uc010coo.2_Intron|DNAH9_uc002gnf.2_Missense_Mutation_p.P316S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4004	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCACATCATCCCCCAGGGCAT	0.587													5	30					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11835355	11835355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:11835355G>A	uc002gne.2	+	64	12198	c.12130G>A	c.(12130-12132)GAG>AAG	p.E4044K	DNAH9_uc010coo.2_Missense_Mutation_p.E3262K|DNAH9_uc002gnf.2_Missense_Mutation_p.E356K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4044	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GTGTTCTCGGGAGACGGAGTT	0.498													65	252					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12649246	12649246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:12649246G>A	uc002gnn.2	+	9	1281	c.982G>A	c.(982-984)GAA>AAA	p.E328K	MYOCD_uc002gno.2_Missense_Mutation_p.E328K|MYOCD_uc002gnp.1_Missense_Mutation_p.E232K|MYOCD_uc002gnq.2_Missense_Mutation_p.E47K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	328					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGAACCAAATGAACAGATGGT	0.408													41	69					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12666597	12666597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:12666597G>A	uc002gnn.2	+	13	2752	c.2453G>A	c.(2452-2454)GGA>GAA	p.G818E	MYOCD_uc002gno.2_Missense_Mutation_p.G866E|MYOCD_uc002gnq.2_Missense_Mutation_p.G542E	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	818					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGCCCCCTAGGAAAGATGAGT	0.478													62	32					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12666631	12666631	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:12666631G>A	uc002gnn.2	+	13	2786	c.2487G>A	c.(2485-2487)GGG>GGA	p.G829G	MYOCD_uc002gno.2_Silent_p.G877G|MYOCD_uc002gnq.2_Silent_p.G553G	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	829					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TAAAAATTGGGAGCGAAGAGC	0.483													22	57					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12666805	12666805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:12666805G>A	uc002gnn.2	+	13	2960	c.2661G>A	c.(2659-2661)TGG>TGA	p.W887*	MYOCD_uc002gno.2_Nonsense_Mutation_p.W935*|MYOCD_uc002gnq.2_Nonsense_Mutation_p.W611*	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	887					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AATCTCCCTGGGAAACCATGG	0.547													12	45					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12844398	12844398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:12844398G>A	uc002gnr.3	+	8	935	c.608G>A	c.(607-609)AGT>AAT	p.S203N	RICH2_uc010vvk.1_Missense_Mutation_p.S203N|RICH2_uc010vvl.1_Missense_Mutation_p.S203N|RICH2_uc002gns.3_Missense_Mutation_p.S3N|RICH2_uc010vvm.1_Missense_Mutation_p.S203N|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	203	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GATATGTACAGTTTTGTGGCC	0.413													13	44					0	0	1	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13503904	13503904	+	Silent	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:13503904C>G	uc002gob.1	-	1	1341	c.543G>C	c.(541-543)GTG>GTC	p.V181V		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	181	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GCTCGGCGCCCACGGCGCGCA	0.721													3	17					0	0	1	0	0
HS3ST3B1	9953	broad.mit.edu	37	17	14248422	14248422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:14248422C>T	uc002goh.1	+	2	962	c.632C>T	c.(631-633)CCC>CTC	p.P211L		NM_006041	NP_006032	Q9Y662	HS3SB_HUMAN	heparan sulfate D-glucosaminyl	211	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Golgi membrane|integral to plasma membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		CGGGAGGCCCCTGCGCGCATC	0.617													5	11					0	0	1	0	0
TBC1D26	353149	broad.mit.edu	37	17	15642096	15642096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:15642096G>A	uc010cov.2	+	8	699	c.449G>A	c.(448-450)AGC>AAC	p.S150N	TBC1D26_uc010cou.1_Missense_Mutation_p.S150N|TBC1D26_uc002gpb.3_RNA	NM_178571	NP_848666	Q86UD7	TBC26_HUMAN	TBC1 domain family, member 26	150	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.078)		CTAGATGTCAGCCACACCCTG	0.542													34	86					0	0	1	0	0
LOC162632	162632	broad.mit.edu	37	17	16703368	16703368	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:16703368C>T	uc010cpj.1	+	19		c.4479C>T			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						AAGGGAGGCTCTGGCTGCCCC	0.517													15	151					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18023256	18023256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:18023256C>T	uc010vxh.1	+	2	1480	c.1142C>T	c.(1141-1143)GCC>GTC	p.A381V		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	381	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GTCCCCTATGCCGAAGGCGTC	0.602													30	75					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18023580	18023580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:18023580G>A	uc010vxh.1	+	2	1804	c.1466G>A	c.(1465-1467)GGG>GAG	p.G489E		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	489	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AAGCTGTTTGGGAAGGAGAAG	0.627													11	36					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18027809	18027809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:18027809C>T	uc010vxh.1	+	3	3960	c.3622C>T	c.(3622-3624)CGC>TGC	p.R1208C		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1208	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GCACTCCATCCGCAACCTGCC	0.637													16	29					0	0	1	0	0
TRIM16L	147166	broad.mit.edu	37	17	18635409	18635409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:18635409C>T	uc002gug.1	+	9	1112	c.425C>T	c.(424-426)TCC>TTC	p.S142F	TRIM16L_uc010vyf.1_Missense_Mutation_p.S196F|TRIM16L_uc002guh.1_Missense_Mutation_p.S142F|TRIM16L_uc010cqg.1_Missense_Mutation_p.S244F|TRIM16L_uc002gui.1_Missense_Mutation_p.S142F|TRIM16L_uc010vyg.1_Missense_Mutation_p.S142F|TRIM16L_uc010vyh.1_Intron	NM_001037330	NP_001032407	Q309B1	TR16L_HUMAN	tripartite motif-containing 16-like	142	B30.2/SPRY.					cytoplasm					0						TATTGGACTTCCAAACCTGAG	0.478													50	36					0	0	1	0	0
FBXW10	10517	broad.mit.edu	37	17	18651287	18651287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:18651287C>T	uc002guk.2	+	2	771	c.539C>T	c.(538-540)TCC>TTC	p.S180F	FBXW10_uc002guj.2_Missense_Mutation_p.S180F|FBXW10_uc002gul.2_Missense_Mutation_p.S180F|FBXW10_uc010cqh.1_Missense_Mutation_p.S180F	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	180	WD 1.									ovary(1)	1						GTGTGTTTTTCCCCTGAGAAA	0.478													38	14					0	0	1	0	0
EPN2	22905	broad.mit.edu	37	17	19215451	19215451	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:19215451G>A	uc002gvd.3	+	6	1414	c.966G>A	c.(964-966)AAG>AAA	p.K322K	EPN2_uc010cql.1_Silent_p.K37K|EPN2_uc002gve.3_Silent_p.K265K|EPN2_uc002gvf.3_Silent_p.K37K|EPN2_uc010vyo.1_Silent_p.K37K|EPN2_uc002gvg.1_Silent_p.K265K|EPN2_uc010vyp.1_Silent_p.K265K|EPN2_uc010vyq.1_Silent_p.K265K|EPN2_uc002gvh.1_Silent_p.K322K|EPN2_uc002gvj.3_5'Flank	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	322					endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					TTCCAAAAAAGAAAGAGGTAA	0.507													34	61					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19459315	19459315	+	Silent	SNP	C	T	T	rs138282585	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:19459315C>T	uc002gvy.1	+	10	947	c.861C>T	c.(859-861)CTC>CTT	p.L287L	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Silent_p.L287L|SLC47A1_uc010vyz.1_Silent_p.L264L|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Silent_p.L92L|SLC47A1_uc010vza.1_5'UTR|SLC47A1_uc010vzb.1_Silent_p.L21L|SLC47A1_uc010vzc.1_5'UTR|SNORA59B_uc002gvz.1_5'Flank	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	287	Extracellular (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					CAGGCATCCTCGGCATGGTGG	0.592													9	30					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20406445	20406445	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:20406445C>T	uc002gxb.2	-	3		c.777G>A								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		CTTCCATCTCCATCTCCAGGT	0.642													8	16					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20805613	20805613	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:20805613G>A	uc002gyg.1	+	4		c.797G>A			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		GCCCATTACTGGAGCAGCAGC	0.562													27	73					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319528	21319528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:21319528G>A	uc002gyv.1	+	3	1579	c.874G>A	c.(874-876)GAC>AAC	p.D292N		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	292	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GGAGACGGACGACTTTGAGAT	0.612										Prostate(3;0.18)			13	91					0	0	1	0	0
FAM27L	284123	broad.mit.edu	37	17	21826114	21826114	+	RNA	SNP	C	T	T	rs144380293	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:21826114C>T	uc002gyz.2	+	2		c.224C>T				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		TGACCACACTCCAGCCAAGGA	0.532													26	63					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	25749151	25749151	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:25749151C>T	uc002gzg.2	+	6		c.1052C>T			uc002gzh.1_5'Flank					Homo sapiens similar to ubiquitin specific protease 6, mRNA (cDNA clone IMAGE:5168266), with apparent retained intron.																		GACACCAGATCGTTTTCTGCC	0.517													5	6					0	0	1	0	0
KSR1	8844	broad.mit.edu	37	17	25909935	25909935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:25909935C>T	uc010crg.2	+	5	818	c.373C>T	c.(373-375)CCC>TCC	p.P125S	KSR1_uc002gzj.1_Intron	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	260				FSEGLSDTCIPLHASGRLTPRAL -> EFRHTSALTQHTAH TQHTSAHTQ (in Ref. 3).	Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CCGGCTGACCCCCCGTGCCCT	0.697													8	20					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26089931	26089931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:26089931G>A	uc002gzu.2	-	22	2957	c.2693C>T	c.(2692-2694)TCC>TTC	p.S898F		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	898	FAD-binding FR-type.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GGGGAGCTGGGAAAGCAGGAA	0.597													7	16					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26820755	26820755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:26820755G>A	uc002hbh.2	+	7	1112	c.1045G>A	c.(1045-1047)GGC>AGC	p.G349S	SLC13A2_uc010wal.1_Missense_Mutation_p.G306S|SLC13A2_uc010wam.1_Missense_Mutation_p.G305S|SLC13A2_uc010wan.1_Missense_Mutation_p.G398S|SLC13A2_uc010wao.1_Missense_Mutation_p.G306S|SLC13A2_uc002hbi.2_Missense_Mutation_p.G278S	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	349						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCGGGAGCCGGGCTTTTTTCT	0.587													73	55					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821496	26821496	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:26821496T>G	uc002hbh.2	+	9	1341	c.1274T>G	c.(1273-1275)CTG>CGG	p.L425R	SLC13A2_uc010wam.1_Missense_Mutation_p.L381R|SLC13A2_uc010wan.1_Missense_Mutation_p.L474R|SLC13A2_uc010wao.1_Missense_Mutation_p.L382R|SLC13A2_uc002hbi.2_Missense_Mutation_p.L354R	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	425						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	GTGTTATTGCTGGGTGGTGGC	0.612											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	56					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26851655	26851655	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:26851655C>T	uc010crm.2	+	3	456	c.258C>T	c.(256-258)CCC>CCT	p.P86P	FOXN1_uc002hbj.2_Silent_p.P86P	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	86					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					CAGCCGGCCCCGGCCCTGGGC	0.687													23	26					0	0	1	0	0
SPAG5	10615	broad.mit.edu	37	17	26919945	26919945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:26919945G>A	uc002hbq.2	-	3	409	c.317C>T	c.(316-318)CCC>CTC	p.P106L	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	106					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					GCTAATTTGGGGAATTGGATC	0.443													31	138					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27068554	27068554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:27068554C>T	uc002hcp.2	+	14	2015	c.2015C>T	c.(2014-2016)TCC>TTC	p.S672F	TRAF4_uc002hcq.1_5'Flank|TRAF4_uc002hcs.2_5'Flank	NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	672	RCC1 5.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					ACTTCCGTGTCCTGTTGCCAT	0.587													18	94					0	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27414026	27414026	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:27414026G>A	uc002hdt.1	-	38	5798	c.5640C>T	c.(5638-5640)CTC>CTT	p.L1880L	MYO18A_uc010wbc.1_Silent_p.L1413L|MYO18A_uc002hds.2_Silent_p.L1422L|MYO18A_uc010csa.1_Silent_p.L1843L|MYO18A_uc002hdu.1_Silent_p.L1880L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1880	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TGGTGTCCCGGAGCTGCCTCT	0.622													11	55					0	0	1	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613735	27613735	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:27613735T>A	uc002hdy.3	-	2	1366	c.1277A>T	c.(1276-1278)AAT>ATT	p.N426I	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	426						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			AGGATAAACATTTCCATCAGT	0.468													22	41					0	0	1	0	0
TMEM98	26022	broad.mit.edu	37	17	31260281	31260281	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:31260281T>A	uc002hhq.2	+	4	679	c.221T>A	c.(220-222)ATT>AAT	p.I74N	TMEM98_uc002hhr.2_Missense_Mutation_p.I74N	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	74						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			AACCCCCACATTGAGGCCATT	0.522													21	124					0	0	1	0	0
CCL7	6354	broad.mit.edu	37	17	32597386	32597386	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:32597386G>A	uc002hhz.2	+	1	146	c.76_splice	c.e1+1	p.V26_splice	CCL7_uc010ctf.2_Splice_Site	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor						cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		GCTCAGCCAGGTAAGGTCCCT	0.552													18	21					0	0	1	0	0
CCT6B	10693	broad.mit.edu	37	17	33259390	33259390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:33259390G>A	uc002hig.2	-	11	1437	c.1343C>T	c.(1342-1344)CCC>CTC	p.P448L	CCT6B_uc010ctg.2_Missense_Mutation_p.P411L|CCT6B_uc010wcc.1_Missense_Mutation_p.P403L	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	448					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				TTGTACCTTGGGAATAATGAG	0.388													21	125					0	0	1	0	0
NLE1	54475	broad.mit.edu	37	17	33464654	33464654	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:33464654G>A	uc002hiy.1	-	6	571	c.543C>T	c.(541-543)CTC>CTT	p.L181L	NLE1_uc010ctn.1_5'UTR|NLE1_uc002hiz.1_5'UTR	NM_018096	NP_060566	Q9NVX2	NLE1_HUMAN	Notchless gene homolog isoform a	181	WD 2.					nucleolus				breast(3)|ovary(1)	4		Ovarian(249;0.17)				GGTCCCAGAGGAGAATCTGAA	0.587													9	28					0	0	1	0	0
RASL10B	91608	broad.mit.edu	37	17	34062227	34062227	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:34062227C>T	uc002hju.2	+	2	390	c.24C>T	c.(22-24)GCC>GCT	p.A8A		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	8	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ACCGGGTGGCCGTGCTGGGGG	0.692													14	63					0	0	1	0	0
CCL16	6360	broad.mit.edu	37	17	34305218	34305218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:34305218C>T	uc002hkl.2	-	2	225	c.158G>A	c.(157-159)GGA>GAA	p.G53E	CCL16_uc002hkm.2_RNA	NM_004590	NP_004581	O15467	CCL16_HUMAN	small inducible cytokine A16 precursor	53					cell-cell signaling|immune response|inflammatory response	extracellular space	chemoattractant activity|chemokine activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTTTCTGTATCCCACCACTAG	0.502													87	152					0	0	1	0	0
CCL14	6358	broad.mit.edu	37	17	34313636	34313636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:34313636G>A	uc010wcr.1	-	1	129	c.50C>T	c.(49-51)GCC>GTC	p.A17V	CCL14_uc010wcq.1_Missense_Mutation_p.A17V|CCL14_uc002hkn.2_RNA|CCL14-CCL15_uc010wcs.1_RNA|CCL14-CCL15_uc010wct.1_RNA|uc002hkq.2_RNA	NM_032963	NP_116739	Q16627	CCL14_HUMAN	chemokine (C-C motif) ligand 14 isoform 1	17					cellular calcium ion homeostasis|immune response|positive regulation of cell proliferation	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGTCCCTAGGGCGATGGTGAT	0.562													15	52					0	0	1	0	0
CCL15	6359	broad.mit.edu	37	17	34325917	34325917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:34325917G>A	uc010wcu.1	-	2	690	c.121C>T	c.(121-123)CCA>TCA	p.P41S	CCL14-CCL15_uc010wcs.1_RNA|CCL14-CCL15_uc010wct.1_RNA	NM_032965	NP_116741	Q16663	CCL15_HUMAN	chemokine (C-C motif) ligand 15 precursor	41					cell-cell signaling|cellular calcium ion homeostasis|immune response	extracellular space	chemoattractant activity|chemokine activity|heparin binding|signal transducer activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGAACTACTGGATTTTCCAGT	0.438													8	36					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35640208	35640208	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:35640208G>A	uc002hnm.2	-	5	650	c.459C>T	c.(457-459)TTC>TTT	p.F153F	ACACA_uc002hnk.2_Silent_p.F75F|ACACA_uc002hnl.2_Silent_p.F95F|ACACA_uc002hnn.2_Silent_p.F153F|ACACA_uc002hno.2_Silent_p.F190F|ACACA_uc010cuz.2_Silent_p.F153F|ACACA_uc002hnq.2_Silent_p.F75F	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	153	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CCATGACAACGAATCTAATTG	0.413													21	31					0	0	1	0	0
TADA2A	6871	broad.mit.edu	37	17	35797851	35797852	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:35797851_35797852CC>TT	uc002hnt.2	+	5	362_363	c.205_206CC>TT	c.(205-207)CCT>TTT	p.P69F	TADA2A_uc002hnu.1_Missense_Mutation_p.P69F|TADA2A_uc002hnv.2_Missense_Mutation_p.P69F|TADA2A_uc010wdd.1_Missense_Mutation_p.P69F|TADA2A_uc002hnw.2_5'UTR|TADA2A_uc010cvb.2_5'UTR	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	69					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						TTCAGATTTTCCTGTCCTTGAT	0.337													17	120					0	0	1	0	0
SYNRG	11276	broad.mit.edu	37	17	35900518	35900518	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:35900518G>A	uc002hoa.2	-	16	3413	c.3330C>T	c.(3328-3330)ATC>ATT	p.I1110I	SYNRG_uc010wde.1_Silent_p.I1032I|SYNRG_uc010wdf.1_Silent_p.I1032I|SYNRG_uc002hoc.2_Silent_p.I1031I|SYNRG_uc002hoe.2_Silent_p.I1032I|SYNRG_uc002hod.2_Silent_p.I987I|SYNRG_uc010wdg.1_Silent_p.I904I|SYNRG_uc002hob.2_Silent_p.I1110I	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	1110					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						ACTTGTCTCGGATGACGGGCA	0.527													63	89					0	0	1	0	0
HNF1B	6928	broad.mit.edu	37	17	36064984	36064984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:36064984G>A	uc002hok.3	-	6	1500	c.1279C>T	c.(1279-1281)CCC>TCC	p.P427S	HNF1B_uc010wdi.1_Missense_Mutation_p.P401S	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	427					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			GATTGCTGGGGATTATGGTGG	0.483									Hereditary_Prostate_Cancer				189	324					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36484591	36484591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:36484591C>T	uc002hpz.2	-	11	4882	c.4861G>A	c.(4861-4863)GAG>AAG	p.E1621K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1621	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGCATTTTCTCCTTGTCCTTT	0.493													41	133					0	0	1	0	0
SRCIN1	80725	broad.mit.edu	37	17	36689657	36689657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:36689657G>A	uc002hqd.2	-	19	3652	c.3427C>T	c.(3427-3429)CCA>TCA	p.P1143S		NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	1015					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						TCTTTAGATGGTTTAGTGGCC	0.542													5	25					0	0	1	0	0
PLXDC1	57125	broad.mit.edu	37	17	37234268	37234268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:37234268C>T	uc002hrg.2	-	11	1296	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	uc002hre.1_Intron|uc002hrf.1_Intron|PLXDC1_uc010cvr.1_Missense_Mutation_p.E70K|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	362	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						TCGTGGTCCTCATCCTGGAAG	0.552													31	61					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922240	37922240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:37922240C>T	uc002hsu.2	-	8	1395	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	IKZF3_uc002htd.2_Missense_Mutation_p.E411K|IKZF3_uc010cwd.2_Missense_Mutation_p.E302K|IKZF3_uc002hsv.2_Missense_Mutation_p.E372K|IKZF3_uc010cwe.2_Missense_Mutation_p.E311K|IKZF3_uc010cwf.2_Missense_Mutation_p.E263K|IKZF3_uc010cwg.2_Missense_Mutation_p.E224K|IKZF3_uc002hsw.2_Missense_Mutation_p.E406K|IKZF3_uc002hsx.2_Missense_Mutation_p.E389K|IKZF3_uc002hsy.2_Missense_Mutation_p.E406K|IKZF3_uc002hsz.2_Missense_Mutation_p.E350K|IKZF3_uc002hta.2_Missense_Mutation_p.E367K|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.E358K|IKZF3_uc002htc.2_Missense_Mutation_p.E198K|IKZF3_uc010wel.1_Missense_Mutation_p.E198K	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	445					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ACCTCCCCTTCCTTGTTGATC	0.567													52	106					0	0	1	0	0
GSDMA	284110	broad.mit.edu	37	17	38121961	38121961	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38121961C>T	uc002htl.1	+	2	139	c.21C>T	c.(19-21)GTC>GTT	p.V7V	GSDMA_uc002htm.1_Silent_p.V7V	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	7					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						TTGAAAATGTCACCCGGGCCC	0.587													6	9					0	0	1	0	0
CASC3	22794	broad.mit.edu	37	17	38324145	38324145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38324145C>T	uc010cwt.1	+	10	1989	c.1694C>T	c.(1693-1695)GCC>GTC	p.A565V	CASC3_uc002hue.2_Missense_Mutation_p.A565V	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	565	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						GACAGCCCTGCCCCGCTGCCT	0.512													80	105					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38640746	38640746	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38640746C>T	uc010cxb.2	-	6	1655	c.1491G>A	c.(1489-1491)CAG>CAA	p.Q497Q		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	497	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CTGGTCGACTCTGAGCAGACG	0.502													44	25					0	0	1	0	0
KRT24	192666	broad.mit.edu	37	17	38856616	38856616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38856616C>T	uc002hvd.2	-	4	932	c.875G>A	c.(874-876)GGA>GAA	p.G292E		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	292	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				TCCAGAGCTTCCTTGCATATT	0.463													121	194					0	0	1	0	0
KRT24	192666	broad.mit.edu	37	17	38859777	38859777	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38859777T>C	uc002hvd.2	-	1	226	c.169A>G	c.(169-171)AGC>GGC	p.S57G		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	57	Head.|Gly-rich.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				AAAGCACCGCTAGACCCCCCA	0.637													38	24					0	0	1	0	0
KRT25	147183	broad.mit.edu	37	17	38906652	38906652	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38906652G>A	uc002hve.2	-	6	1216	c.1155C>T	c.(1153-1155)CTC>CTT	p.L385L		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	385	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				CTCCTATAAGGAGACAGTAGG	0.473													49	164					0	0	1	0	0
KRT28	162605	broad.mit.edu	37	17	38955903	38955903	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38955903G>A	uc002hvh.1	-	1	309	c.243C>T	c.(241-243)CTC>CTT	p.L81L		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	81	Gly-rich.|Head.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TTCCAGAGAGGAGTCCCCCTT	0.537													20	73					0	0	1	0	0
KRT10	3858	broad.mit.edu	37	17	38975075	38975075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:38975075G>A	uc002hvi.2	-	7	1738	c.1712C>T	c.(1711-1713)TCC>TTC	p.S571F	KRT10_uc010cxd.2_RNA|TMEM99_uc002hvj.1_5'Flank	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	571	Ser-rich.|Gly-rich.|Tail.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				CACGGACCCGGAAGAGGAGGA	0.328													7	34					0	0	1	0	0
KRT12	3859	broad.mit.edu	37	17	39019850	39019850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39019850G>A	uc002hvk.2	-	5	1006	c.982C>T	c.(982-984)CGT>TGT	p.R328C		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	328	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				ATCTCCTTACGGAGCTCCCCG	0.567													24	57					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39114963	39114963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39114963G>A	uc002hvo.1	-	7	1402	c.1366C>T	c.(1366-1368)CGG>TGG	p.R456W	KRT39_uc010wfm.1_Missense_Mutation_p.R189W	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	456	Tail.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				ACCAGTATCCGGGACAGGGGT	0.517													65	51					0	0	1	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39190779T>C	uc002hvv.2	-	1	329	c.295A>G	c.(295-297)AGT>GGT	p.S99G		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	109						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACAGCTCCACTGCTGCCCTCC	0.652													4	38					0	0	1	0	0
KRT34	3885	broad.mit.edu	37	17	39535885	39535886	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39535885_39535886CC>TT	uc002hwm.2	-	4	824_825	c.812_813GG>AA	c.(811-813)AGG>AAA	p.R271K		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	271	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				CATACTGACTCCTGGTCTCGTT	0.599													9	55					0	0	1	0	0
KRT32	3882	broad.mit.edu	37	17	39616371	39616371	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39616371G>A	uc002hwr.2	-	7	1399	c.1338C>T	c.(1336-1338)GGC>GGT	p.G446G		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	446	Tail.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				TTCAGTAGCGGCCCTGGGGGC	0.667													18	23					0	0	1	0	0
KRT35	3886	broad.mit.edu	37	17	39633342	39633342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39633342G>A	uc002hws.2	-	7	1377	c.1334C>T	c.(1333-1335)CCC>CTC	p.P445L		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	445	Tail.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				CACACAAATGGGGCGGGGGCT	0.612													10	79					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39642748	39642748	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39642748G>A	uc002hwt.2	-	7	1284	c.1284C>T	c.(1282-1284)GTC>GTT	p.V428V		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	428	Tail.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GCACAGAGGGGACACAGGGCA	0.592													14	28					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39672149	39672149	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39672149G>A	uc002hwy.2	-	5	1205	c.1014C>T	c.(1012-1014)TCC>TCT	p.S338S	KRT15_uc002hwz.2_Silent_p.S240S|KRT15_uc002hxa.2_Silent_p.S173S|KRT15_uc002hxb.1_Silent_p.S173S	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	338	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TGCTGAGCTGGGACTGCAGCT	0.577													35	141					0	0	1	0	0
KRT16	3868	broad.mit.edu	37	17	39768523	39768523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39768523C>T	uc002hxg.3	-	1	557	c.418G>A	c.(418-420)GAG>AAG	p.E140K	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	140	Coil 1A.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCGTTGGCCTCCTCCAGAGCA	0.537													31	116					0	0	1	0	0
KRT17	3872	broad.mit.edu	37	17	39780518	39780518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:39780518C>T	uc002hxh.2	-	1	365	c.244G>A	c.(244-246)GGA>AGA	p.G82R	JUP_uc010wfs.1_Intron|KRT17_uc010wft.1_Missense_Mutation_p.G82R	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	82	Head.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				TTCTCACCTCCAGCCAGCAGC	0.622									Steatocystoma_Multiplex				80	64					0	0	1	0	0
HCRT	3060	broad.mit.edu	37	17	40336477	40336478	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40336477_40336478CC>TT	uc002hzc.1	-	2	177_178	c.90_91GG>AA	c.(88-93)GGGGCG>GGAACG	p.A31T		NM_001524	NP_001515	O43612	OREX_HUMAN	orexin precursor	31					neuropeptide signaling pathway	cell junction|extracellular region|rough endoplasmic reticulum|synaptic vesicle					0		all_cancers(22;1.39e-06)|all_epithelial(22;9.98e-06)|Breast(137;0.000143)|Ovarian(249;0.0221)|Myeloproliferative disorder(1115;0.0255)|Colorectal(1115;0.069)		BRCA - Breast invasive adenocarcinoma(366;0.124)		TGTGCAGCCGCCCCGGACGACA	0.599													5	12					0	0	1	0	0
STAT3	6774	broad.mit.edu	37	17	40497602	40497602	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40497602A>G	uc002hzl.1	-	4	587	c.347T>C	c.(346-348)CTA>CCA	p.L116P	STAT3_uc002hzk.1_Missense_Mutation_p.L116P|STAT3_uc002hzm.1_Missense_Mutation_p.L116P|STAT3_uc010wgh.1_Missense_Mutation_p.L18P|STAT3_uc002hzn.1_Missense_Mutation_p.L116P	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	116					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TGCAGTCTGTAGAAGGCGTGA	0.463									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				6	12					0	0	1	0	0
NAGLU	4669	broad.mit.edu	37	17	40689425	40689425	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40689425T>A	uc002hzv.2	+	2	733	c.393T>A	c.(391-393)TAT>TAA	p.Y131*		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	131						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	GGTACCGCTATTACCAGAATG	0.612													71	55					0	0	1	0	0
COASY	80347	broad.mit.edu	37	17	40716081	40716081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40716081C>T	uc002hzz.2	+	3	960	c.803C>T	c.(802-804)CCC>CTC	p.P268L	COASY_uc010cyj.2_Missense_Mutation_p.P297L|COASY_uc002iab.2_5'UTR|COASY_uc002iad.2_Missense_Mutation_p.P268L|COASY_uc002iac.2_Missense_Mutation_p.P268L|COASY_uc002iae.2_5'UTR|MLX_uc002iaf.2_5'Flank|MLX_uc002iag.2_5'Flank|MLX_uc002iah.2_5'Flank	NM_001042529	NP_001035994	Q13057	COASY_HUMAN	coenzyme A synthase isoform a	268	Phosphopantetheine adenylyltransferase.				coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial outer membrane	ATP binding|dephospho-CoA kinase activity|pantetheine-phosphate adenylyltransferase activity				0		all_cancers(22;1.06e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)		GATGTCATCCCCCTGCTGGAC	0.572													36	52					0	0	1	0	0
TUBG1	7283	broad.mit.edu	37	17	40766974	40766974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40766974C>T	uc002ian.2	+	11	1669	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F		NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	424					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		ATGGACACATCCAGGGAGATT	0.577													42	133					0	0	1	0	0
TUBG2	27175	broad.mit.edu	37	17	40818499	40818499	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40818499C>T	uc010wgr.1	+	10	1411	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S	TUBG2_uc002iaq.2_Silent_p.S227S|TUBG2_uc002iar.2_Silent_p.S232S|TUBG2_uc002ias.2_Silent_p.S227S|TUBG2_uc002iap.2_Silent_p.S232S	NM_016437	NP_057521	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	385					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		CCAGCATCTCCTCGGTGAGTC	0.582													55	61					0	0	1	0	0
EZH1	2145	broad.mit.edu	37	17	40858135	40858135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40858135C>T	uc002iaz.2	-	16	1874	c.1729G>A	c.(1729-1731)GCA>ACA	p.A577T	EZH1_uc002iba.2_Missense_Mutation_p.A568T|EZH1_uc010wgt.1_Missense_Mutation_p.A507T|EZH1_uc010wgu.1_Missense_Mutation_p.A583T|EZH1_uc010wgv.1_Missense_Mutation_p.A537T|EZH1_uc010wgw.1_Missense_Mutation_p.A438T|EZH1_uc010cyp.2_Missense_Mutation_p.A478T|EZH1_uc010cyq.2_Missense_Mutation_p.A494T|EZH1_uc010cyo.1_Missense_Mutation_p.A240T	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	577	Cys-rich.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		TCTCGCACTGCCAGATAGCAA	0.537													24	67					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40936447	40936447	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:40936447G>A	uc002ibj.2	+	4	1041	c.1020G>A	c.(1018-1020)CCG>CCA	p.P340P	WNK4_uc010wgx.1_Missense_Mutation_p.R34Q|WNK4_uc002ibk.1_Silent_p.P112P|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	340	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CAGGGACCCCGGAATTCATGG	0.612													15	18					0	0	1	0	0
ETV4	2118	broad.mit.edu	37	17	41610061	41610061	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:41610061C>T	uc002idw.2	-	8	920	c.792G>A	c.(790-792)ACG>ACA	p.T264T	ETV4_uc002idv.2_5'Flank|ETV4_uc010wih.1_Silent_p.T210T|ETV4_uc010czh.2_Silent_p.T263T|ETV4_uc010wii.1_Silent_p.T225T|ETV4_uc002idx.2_Silent_p.T264T|ETV4_uc010wij.1_Silent_p.T225T	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	264					positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		AGGCGAAGTCCGTCTGTTCCT	0.572			T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								19	86					0	0	1	0	0
PPY	5539	broad.mit.edu	37	17	42018982	42018982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42018982G>A	uc002iep.2	-	2	86	c.41C>T	c.(40-42)TCC>TTC	p.S14F		NM_002722	NP_002713	P01298	PAHO_HUMAN	pancreatic polypeptide preproprotein	14					digestion|protein secretion	extracellular region	hormone activity				0		Breast(137;0.00314)|Prostate(33;0.0724)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CACGCAGGTGGACAGGAGCAG	0.652													20	35					0	0	1	0	0
C17orf53	78995	broad.mit.edu	37	17	42226357	42226357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42226357C>T	uc002ifi.1	+	3	1371	c.1186C>T	c.(1186-1188)CGC>TGC	p.R396C	C17orf53_uc010czq.1_Missense_Mutation_p.R396C|C17orf53_uc002ifj.1_Missense_Mutation_p.R396C|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	396											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		AGCCAAAACTCGCCGTTTCCC	0.612													14	58					0	0	1	0	0
ASB16	92591	broad.mit.edu	37	17	42249664	42249664	+	Silent	SNP	G	A	A	rs139711178	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42249664G>A	uc002ifl.1	+	2	636	c.552G>A	c.(550-552)ACG>ACA	p.T184T	ASB16_uc002ifm.1_RNA	NM_080863	NP_543139	Q96NS5	ASB16_HUMAN	ankyrin repeat and SOCS box-containing protein	184	ANK 4.				intracellular signal transduction		protein binding			kidney(2)	2		Breast(137;0.00765)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.114)		ACCTCTGCACGATCCCCGAGT	0.592													29	49					0	0	1	0	0
UBTF	7343	broad.mit.edu	37	17	42287016	42287016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42287016G>A	uc002igb.2	-	15	1779	c.1712C>T	c.(1711-1713)CCC>CTC	p.P571L	UBTF_uc002igc.2_Missense_Mutation_p.P534L|UBTF_uc010czs.2_Missense_Mutation_p.P571L|UBTF_uc002igd.2_Missense_Mutation_p.P534L|UBTF_uc010czt.2_Missense_Mutation_p.P571L|UBTF_uc002ige.2_Missense_Mutation_p.P534L	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	571	HMG box 6.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		GGCTCACATGGGAGGCTTCTT	0.582													12	40					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42328546	42328546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42328546C>T	uc002igf.3	-	19	2785	c.2636G>A	c.(2635-2637)AGG>AAG	p.R879K		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	879	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CTCCACGTTCCTGAAGATGAG	0.642													4	19					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335095	42335095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42335095C>T	uc002igf.3	-	12	1512	c.1363G>A	c.(1363-1365)GGG>AGG	p.G455R	SLC4A1_uc002igg.3_Missense_Mutation_p.G455R	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	455	Membrane (anion exchange).|Helical; (Potential).		G -> R (in SPH4; Yamagata).|G -> E (in SPH4; Benesov).		bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GGCTGAGCCCCCAGCAGGGCG	0.592													10	54					0	0	1	0	0
GRN	2896	broad.mit.edu	37	17	42429147	42429147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42429147G>A	uc002igp.1	+	10	1382	c.1163G>A	c.(1162-1164)TGC>TAC	p.C388Y	GRN_uc002igr.1_Missense_Mutation_p.C182Y	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	388					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GAGTGGGGCTGCTGTCCAATC	0.587													14	53					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476376	42476376	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42476376C>A	uc002igw.1	-	8	3133	c.3069G>T	c.(3067-3069)CGG>CGT	p.R1023R	GPATCH8_uc002igv.1_Silent_p.R945R|GPATCH8_uc010wiz.1_Silent_p.R945R	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1023						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GAATGAAGTCCCGACGCCCAG	0.597													11	37					3.07112e-06	3.08089e-06	1	1	0
GPATCH8	23131	broad.mit.edu	37	17	42477636	42477636	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42477636G>A	uc002igw.1	-	8	1873	c.1809C>T	c.(1807-1809)CTC>CTT	p.L603L	GPATCH8_uc002igv.1_Silent_p.L525L|GPATCH8_uc010wiz.1_Silent_p.L525L	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	603						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		CTAGGCCTTGGAGATGGTCCT	0.443											OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	67					0	0	1	0	0
ADAM11	4185	broad.mit.edu	37	17	42855416	42855416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:42855416G>A	uc002ihh.2	+	24	2167	c.2167G>A	c.(2167-2169)GAG>AAG	p.E723K	ADAM11_uc010wjd.1_Missense_Mutation_p.E523K|ADAM11_uc002ihi.2_Silent_p.G75G	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	723	Extracellular (Potential).				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				ACCCACGGGGGAGACGGAGAG	0.597													18	83					0	0	1	0	0
ACBD4	79777	broad.mit.edu	37	17	43215131	43215131	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:43215131C>T	uc002iid.2	+	7	851	c.507C>T	c.(505-507)TCC>TCT	p.S169S	ACBD4_uc010wjj.1_Missense_Mutation_p.P182L|ACBD4_uc002iie.2_Missense_Mutation_p.P182L|ACBD4_uc002iif.2_Silent_p.S169S|ACBD4_uc002iic.2_Silent_p.S169S|ACBD4_uc010dae.2_Missense_Mutation_p.P104L	NM_001135707	NP_001129179	Q8NC06	ACBD4_HUMAN	acyl-Coenzyme A binding domain containing 4	169							fatty-acyl-CoA binding			ovary(1)|kidney(1)	2						CCACAGAGTCCCATTCACCCA	0.592													34	153					0	0	1	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43475369	43475369	+	Silent	SNP	C	T	T	rs141908251		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:43475369C>T	uc002iix.2	-	10	1214	c.765G>A	c.(763-765)TCG>TCA	p.S255S	ARHGAP27_uc010dak.2_Silent_p.S228S|ARHGAP27_uc010wjl.1_Silent_p.S374S	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	596	PH.				positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					TGATGGCCTCCGAGTCGTGCT	0.632													34	54					0	0	1	0	0
IMP5	162540	broad.mit.edu	37	17	43924053	43924053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:43924053C>T	uc010wka.1	+	1	1781	c.1781C>T	c.(1780-1782)CCA>CTA	p.P594L	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	594	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCCACCAATCCAGAGGACCGC	0.582													19	101					0	0	1	0	0
KIAA1267	284058	broad.mit.edu	37	17	44249420	44249420	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:44249420G>A	uc002ikb.2	-	1	175	c.90C>T	c.(88-90)TCC>TCT	p.S30S	KIAA1267_uc002ikc.2_Silent_p.S30S|KIAA1267_uc002ikd.2_Silent_p.S30S|KIAA1267_uc010dav.2_Silent_p.S30S	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	30						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				CACTGCCAGGGGACAAGGTAG	0.552													24	100					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	45105650	45105650	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:45105650C>T	uc010wki.1	+	5		c.1252C>T								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		TTTTAGAAATCTTAGTTGCAA	0.299													65	115					0	0	1	0	0
COPZ2	51226	broad.mit.edu	37	17	46110610	46110610	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:46110610G>A	uc002imy.2	-	8	340	c.327C>T	c.(325-327)TTC>TTT	p.F109F		NM_016429	NP_057513	Q9P299	COPZ2_HUMAN	coatomer protein complex, subunit zeta 2	109					intracellular protein transport|vesicle-mediated transport	cis-Golgi network|COPI vesicle coat					0						CCACGTATAGGAAGAGGTCAA	0.488													8	21					0	0	1	0	0
SKAP1	8631	broad.mit.edu	37	17	46262129	46262129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:46262129C>T	uc002ini.1	-	7	635	c.523G>A	c.(523-525)GAA>AAA	p.E175K	SKAP1_uc002inj.1_Missense_Mutation_p.E175K|SKAP1_uc010dbd.1_Missense_Mutation_p.E81K|SKAP1_uc010dbe.1_Missense_Mutation_p.E175K	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	175	PH.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						AAGCAGGATTCTTTCTTGGAA	0.527													48	216					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46628211	46628211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:46628211G>A	uc002inn.2	-	2	1181	c.781C>T	c.(781-783)CCA>TCA	p.P261S	HOXB3_uc010wlm.1_Missense_Mutation_p.P188S|HOXB3_uc010dbf.2_Missense_Mutation_p.P261S|HOXB3_uc010dbg.2_Missense_Mutation_p.P261S|HOXB3_uc002ino.2_Missense_Mutation_p.P261S|HOXB3_uc010wlk.1_Missense_Mutation_p.P129S|HOXB3_uc010wll.1_Missense_Mutation_p.P188S	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	261					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCCGGCTGGAGATGGGCCC	0.647											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	112					0	0	1	0	0
MIR10A	406902	broad.mit.edu	37	17	46657274	46657274	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:46657274C>T	hsa-mir-10a|MI0000266	-			c.36C>T			HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Intron|HOXB3_uc010dbg.2_Intron|HOXB3_uc010wll.1_Intron|HOXB4_uc002inp.2_5'Flank|uc002inq.3_RNA																	0						TACACAAATTCGGATCTACAG	0.393													6	20					0	0	1	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47126745	47126745	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:47126745C>G	uc002iom.2	+	15	2007	c.1673C>G	c.(1672-1674)GCC>GGC	p.A558G	IGF2BP1_uc010dbj.2_Missense_Mutation_p.A419G	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	558	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GACATCCTGGCCCAGGTTAAG	0.582													18	26					0	0	1	0	0
ZNF652	22834	broad.mit.edu	37	17	47375953	47375953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:47375953G>A	uc002iov.3	-	6	2107	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	ZNF652_uc002iow.2_Missense_Mutation_p.S548L|ZNF652_uc002iou.3_RNA	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	548	Mediates interaction with CBFA2T3.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			gtgcaggtgtgagaaggggtg	0.234													21	25					0	0	1	0	0
ACSF2	80221	broad.mit.edu	37	17	48551589	48551589	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:48551589C>T	uc002iqu.2	+	15	1862	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I	ACSF2_uc010wml.1_Silent_p.I543I|ACSF2_uc010wmm.1_Silent_p.I611I|ACSF2_uc010wmn.1_Silent_p.I573I|ACSF2_uc010wmo.1_Silent_p.I426I|ACSF2_uc010dbt.1_Silent_p.I90I	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	586					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CGAAGTACATCGTGTTTGTCA	0.592													90	78					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48606545	48606545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:48606545G>A	uc010wmr.1	+	18	3011	c.2849G>A	c.(2848-2850)AGT>AAT	p.S950N	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	913					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGCCTGCACAGTGAGGTGAAG	0.542													6	31					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48701285	48701285	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:48701285G>A	uc002irk.1	+	36	6450	c.6078G>A	c.(6076-6078)ACG>ACA	p.T2026T	CACNA1G_uc002irj.1_Silent_p.T1899T|CACNA1G_uc002irl.1_Silent_p.T1910T|CACNA1G_uc002irm.1_Silent_p.T1947T|CACNA1G_uc002irn.1_Silent_p.T1892T|CACNA1G_uc002iro.1_Silent_p.T1899T|CACNA1G_uc002irp.1_Silent_p.T1981T|CACNA1G_uc002irq.1_Silent_p.T2003T|CACNA1G_uc002irr.1_Silent_p.T1933T|CACNA1G_uc002irs.1_Silent_p.T1970T|CACNA1G_uc002irt.1_Silent_p.T1915T|CACNA1G_uc002irv.1_Silent_p.T1922T|CACNA1G_uc002irw.1_Silent_p.T1955T|CACNA1G_uc002iru.1_Silent_p.T1992T|CACNA1G_uc002irx.1_Silent_p.T1846T|CACNA1G_uc002iry.1_Silent_p.T1835T|CACNA1G_uc002irz.1_Silent_p.T1839T|CACNA1G_uc002isa.1_Silent_p.T1812T|CACNA1G_uc002isb.1_Silent_p.T1853T|CACNA1G_uc002isc.1_Silent_p.T1928T|CACNA1G_uc002isd.1_Silent_p.T1821T|CACNA1G_uc002ise.1_Silent_p.T1849T|CACNA1G_uc002isf.1_Silent_p.T1876T|CACNA1G_uc002isg.1_Silent_p.T1794T|CACNA1G_uc002ish.1_Silent_p.T1801T|CACNA1G_uc002isi.1_Silent_p.T1789T	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2026	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCCACCCCACGGAGCTGCCAG	0.592													19	21					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48745836	48745836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:48745836G>A	uc002isl.2	+	14	1908	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	610	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GAGCCAAGAGGAACTTGACCC	0.567													36	41					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917409	48917409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:48917409G>A	uc002isv.3	+	2	1454	c.760G>A	c.(760-762)GTC>ATC	p.V254I	WFIKKN2_uc010dbu.2_Missense_Mutation_p.V161I	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	254	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GGAGAATGTGGTCATGCGGCC	0.597													19	50					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	50149706	50149706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:50149706C>T	uc002itw.3	-	2	1095	c.109G>A	c.(109-111)GAG>AAG	p.E37K	CA10_uc002itv.3_Missense_Mutation_p.E43K|CA10_uc002itx.3_Missense_Mutation_p.E37K|CA10_uc002ity.3_Missense_Mutation_p.E37K|CA10_uc002itz.2_Missense_Mutation_p.E37K	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	37					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TGGACCACCTCCTTGTATGCC	0.363													15	75					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900779	51900779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51900779G>A	uc002iua.2	+	1	541	c.385G>A	c.(385-387)GAC>AAC	p.D129N	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	129					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGCCTCAGGGGACAGCCTGGA	0.572													24	111					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900873	51900873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51900873G>A	uc002iua.2	+	1	635	c.479G>A	c.(478-480)CGG>CAG	p.R160Q	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	160	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CAGGAGCAGCGGGAAAAGCGC	0.552													31	87					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900876	51900876	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51900876A>G	uc002iua.2	+	1	638	c.482A>G	c.(481-483)GAA>GGA	p.E161G	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	161	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GAGCAGCGGGAAAAGCGCAGG	0.547													41	75					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901264	51901264	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51901264C>T	uc002iua.2	+	1	1026	c.870C>T	c.(868-870)TCC>TCT	p.S290S	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	290	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TGGTGGAGTCCATCTTCCGCA	0.567													14	77					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901615	51901615	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51901615G>A	uc002iua.2	+	1	1377	c.1221G>A	c.(1219-1221)GGG>GGA	p.G407G	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	407	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TGGAAATAGGGAATAGCTGTC	0.517													16	37					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902129	51902129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51902129G>A	uc002iua.2	+	1	1891	c.1735G>A	c.(1735-1737)GAT>AAT	p.D579N	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	579					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCTTCAGAGGGATGAATTTAT	0.418													37	74					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51902232	51902232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:51902232G>A	uc002iua.2	+	1	1994	c.1838G>A	c.(1837-1839)GGG>GAG	p.G613E	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	613					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ACAATTTCAGGGAAGGGATCT	0.423													34	67					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54450050	54450050	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:54450050C>T	uc002iun.1	+	6	689	c.654C>T	c.(652-654)GTC>GTT	p.V218V		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	218	Potential.									large_intestine(1)|ovary(1)	2						ACACACTGGTCCAGGAAGCCC	0.493													78	62					0	0	1	0	0
MSX2P1	55545	broad.mit.edu	37	17	56235000	56235000	+	RNA	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56235000A>G	uc002ivn.2	+	1		c.681A>G				NR_002307				Homo sapiens msh homeobox 2 pseudogene 1 (MSX2P1), non-coding RNA.												0						TGGCTGCAAAACCTATGCTAC	0.532													26	29					0	0	1	0	0
OR4D2	124538	broad.mit.edu	37	17	56247040	56247040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56247040G>A	uc010wnp.1	+	1	24	c.24G>A	c.(22-24)TGG>TGA	p.W8*		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACCTCACGTGGGTATCAGACT	0.473													31	102					0	0	1	0	0
OR4D2	124538	broad.mit.edu	37	17	56247328	56247328	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56247328C>T	uc010wnp.1	+	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCTTCTTCTTCCACTTTTTGG	0.517													68	63					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56350853	56350853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56350853G>A	uc002ivu.1	-	9	1720	c.1543C>T	c.(1543-1545)CGG>TGG	p.R515W		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	515					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	GGCTGGTACCGATTGTCCAGG	0.592													76	112					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56385021	56385022	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56385021_56385022GG>AA	uc002ivx.3	-	24	5804_5805	c.4933_4934CC>TT	c.(4933-4935)CCT>TTT	p.P1645F	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.P1585F|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1645F	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1645	SH3 2.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCCAGCATCAGGATTGGGCGAC	0.55													9	43					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56676785	56676785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56676785C>T	uc010dcz.1	-	14	2057	c.1939G>A	c.(1939-1941)GGA>AGA	p.G647R	TEX14_uc002iwr.1_Missense_Mutation_p.G641R|TEX14_uc002iws.1_Missense_Mutation_p.G641R|TEX14_uc010dda.1_Missense_Mutation_p.G421R	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	647						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAAGCAGCTCCTGGAGGCTCT	0.498													68	55					0	0	1	0	0
RAD51C	5889	broad.mit.edu	37	17	56809878	56809878	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:56809878G>A	uc002iwu.2	+	8	1041	c.999G>A	c.(997-999)AAG>AAA	p.K333K	RAD51C_uc010woa.1_Silent_p.K333K|RAD51C_uc010ddc.2_RNA|RAD51C_uc002iwv.2_RNA|RAD51C_uc002iww.2_RNA	NM_058216	NP_478123	O43502	RA51C_HUMAN	RAD51 homolog C isoform 1	333					blood coagulation|DNA repair	mitochondrion|nucleoplasm|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCAGCCAGAAGGAATGCACAG	0.328								Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2				6	43					0	0	1	0	0
TRIM37	4591	broad.mit.edu	37	17	57128577	57128577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:57128577C>T	uc002iwy.3	-	14	1756	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K	TRIM37_uc002iwz.3_Missense_Mutation_p.E438K|TRIM37_uc002ixa.3_Missense_Mutation_p.E316K|TRIM37_uc010woc.1_Missense_Mutation_p.E404K	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	438	Potential.					perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					TTTCTTACCTCTTTAAGGTTG	0.308									Mulibrey_Nanism				14	25					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57287427	57287427	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:57287427G>A	uc002ixi.2	+	1	57	c.15G>A	c.(13-15)GTG>GTA	p.V5V		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	5					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					CTGGTCCCGTGAGCTTGCGAG	0.592													15	20					0	0	1	0	0
RNFT1	51136	broad.mit.edu	37	17	58031471	58031471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:58031471C>T	uc002iya.2	-	8	1201	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	RNFT1_uc002iyb.2_RNA|RNFT1_uc002iyc.2_Missense_Mutation_p.D108N	NM_016125	NP_057209	Q5M7Z0	RNFT1_HUMAN	PTD016 protein	370						integral to membrane	zinc ion binding				0	all_cancers(5;1.58e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;7.95e-12)|all cancers(12;1.34e-10)			TCATCCACATCTGAACACTGT	0.323													13	24					0	0	1	0	0
NACA2	342538	broad.mit.edu	37	17	59668299	59668299	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:59668299G>A	uc002izj.2	-	1	269	c.243C>T	c.(241-243)TCC>TCT	p.S81S		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	81	NAC-A/B.				protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					GACCCAGTTTGGACATAGCCT	0.458													61	255					0	0	1	0	0
BRIP1	83990	broad.mit.edu	37	17	59857626	59857626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:59857626G>A	uc002izk.1	-	13	2072	c.1931C>T	c.(1930-1932)TCA>TTA	p.S644L	BRIP1_uc002izl.1_Missense_Mutation_p.S25L	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	644					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						ACTAACCTGTGAATTTTTAAT	0.343			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				42	51					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60038340	60038340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:60038340G>A	uc002izo.2	-	23	5445	c.5368C>T	c.(5368-5370)CTT>TTT	p.L1790F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1790					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CCCACAAAAAGAACATTATAT	0.373													11	36					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458													11	124					2.37509e-13	2.39611e-13	1	1	0
MARCH10	162333	broad.mit.edu	37	17	60821749	60821749	+	Missense_Mutation	SNP	G	A	A	rs140083317		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:60821749G>A	uc010ddr.2	-	5	761	c.523C>T	c.(523-525)CCC>TCC	p.P175S	MARCH10_uc002jag.3_Missense_Mutation_p.P175S|MARCH10_uc010dds.2_Missense_Mutation_p.P213S|MARCH10_uc002jah.2_Missense_Mutation_p.P174S	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	175							ligase activity|zinc ion binding				0						GCTCCCCTGGGAACCGGCACC	0.532													34	176					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61621690	61621690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:61621690C>T	uc002jay.2	+	12	2502	c.2422C>T	c.(2422-2424)CCC>TCC	p.P808S	KCNH6_uc010wpl.1_Missense_Mutation_p.P649S|KCNH6_uc010wpm.1_Missense_Mutation_p.P772S|KCNH6_uc002jaz.1_Missense_Mutation_p.P719S	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	808	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AAGGCACAGCCCCCAAAGCCC	0.607													21	22					0	0	1	0	0
GH1	2688	broad.mit.edu	37	17	61995446	61995446	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:61995446G>A	uc002jdj.2	-	3	284	c.222C>T	c.(220-222)CCC>CCT	p.P74P	GH1_uc002jdi.2_Silent_p.P59P|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Silent_p.P74P	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	74					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						GGGAGGTCTGGGGGTTCTGCA	0.537													98	158					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62029011	62029011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:62029011C>T	uc002jds.1	-	14	2703	c.2626G>A	c.(2626-2628)GAG>AAG	p.E876K		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	876					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TTCTCATCCTCGGGGGCAGTC	0.657													11	5					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62133120	62133120	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:62133120G>A	uc002jdz.2	-	13	1700	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	529	Cytoplasmic (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						AGGCCCTGGGGGACGTGCTGG	0.667													11	18					0	0	1	0	0
POLG2	11232	broad.mit.edu	37	17	62492550	62492550	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:62492550C>T	uc002jei.2	-	1	620	c.537G>A	c.(535-537)GGG>GGA	p.G179G	POLG2_uc010deg.1_Silent_p.G179G	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	179					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			CCCGTAGTTTCCCAGAAGTTT	0.453													32	105					0	0	1	0	0
DDX5	1655	broad.mit.edu	37	17	62499146	62499146	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:62499146A>C	uc002jek.2	-	8	1128	c.881T>G	c.(880-882)CTG>CGG	p.L294R	DDX5_uc010deh.2_Missense_Mutation_p.L294R|DDX5_uc002jej.2_Missense_Mutation_p.L189R|DDX5_uc010wqa.1_Missense_Mutation_p.L215R|DDX5_uc002jel.1_Missense_Mutation_p.L42R	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	294	Helicase ATP-binding.				cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			ATAGTCTTTCAGGAAATCTTC	0.393			T	ETV4	prostate								49	75					0	0	1	0	0
LOC146880	146880	broad.mit.edu	37	17	62754738	62754738	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:62754738G>A	uc010wqc.1	-	7		c.1612C>T				NR_026899				Homo sapiens cDNA FLJ30780 fis, clone FEBRA2000856.												0						GAGACAAAGGGAGAAAGCTAA	0.378													18	89					0	0	1	0	0
CCDC46	201134	broad.mit.edu	37	17	63633277	63633277	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:63633277G>A	uc002jfl.2	-	26	3048	c.2829C>T	c.(2827-2829)ATC>ATT	p.I943I	CCDC46_uc010deo.2_Silent_p.I614I|CCDC46_uc002jfm.2_Silent_p.I943I|CCDC46_uc010dep.2_Silent_p.I901I|AXIN2_uc010den.1_5'UTR|CCDC46_uc002jfk.2_Silent_p.I199I	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	943	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			CTTCCTGAAGGATGGAAGCTC	0.433													24	29					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65955829	65955829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:65955829C>T	uc002jgf.2	+	24	8160	c.8099C>T	c.(8098-8100)TCC>TTC	p.S2700F	BPTF_uc002jge.2_Missense_Mutation_p.S2683F|BPTF_uc002jgg.2_Missense_Mutation_p.S357F|BPTF_uc002jgh.2_Missense_Mutation_p.S159F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2826					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGCCTTCTGTCCACGCCCACC	0.468													11	37					0	0	1	0	0
FAM20A	54757	broad.mit.edu	37	17	66533873	66533873	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:66533873C>T	uc002jho.2	-	11	1659	c.1371G>A	c.(1369-1371)AAG>AAA	p.K457K	FAM20A_uc010wqp.1_Silent_p.K319K|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Silent_p.K168K	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	457						extracellular region					0	Breast(10;1.64e-13)					AAAGTGTTTTCTTTTTTATCC	0.448													4	18					0	0	1	0	0
FAM20A	54757	broad.mit.edu	37	17	66538868	66538868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:66538868C>T	uc002jho.2	-	6	1183	c.895G>A	c.(895-897)GAA>AAA	p.E299K	FAM20A_uc010wqp.1_Missense_Mutation_p.E161K|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Missense_Mutation_p.M1I	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	299						extracellular region					0	Breast(10;1.64e-13)					TGCAGGATTTCATTCTTGGTG	0.517													27	94					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67121137	67121137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:67121137G>A	uc002jhw.1	-	9	1334	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	387					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GAAGGGTCAGGAAAAATTACA	0.279													15	33					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67129836	67129836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:67129836C>T	uc002jhw.1	-	6	912	c.737G>A	c.(736-738)AGA>AAA	p.R246K		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	246					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AGACTTTTTTCTCTCTTTTGT	0.294													5	30					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71375682	71375682	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:71375682T>C	uc010dfm.2	-	35	4769	c.4769A>G	c.(4768-4770)AAC>AGC	p.N1590S	SDK2_uc002jjt.3_Missense_Mutation_p.N730S|SDK2_uc010dfn.2_Missense_Mutation_p.N1269S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1590	Extracellular (Potential).|Fibronectin type-III 10.				cell adhesion	integral to membrane				ovary(2)	2						CCTGTGCTTGTTCAGGTCTGT	0.642													29	23					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71391522	71391522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:71391522C>T	uc010dfm.2	-	25	3364	c.3364G>A	c.(3364-3366)GAG>AAG	p.E1122K	SDK2_uc002jjt.3_Missense_Mutation_p.E281K|SDK2_uc010dfn.2_Missense_Mutation_p.E801K	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1122	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion	integral to membrane				ovary(2)	2						TATTCCATCTCCGGGAGAGGC	0.637													7	50					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72339245	72339245	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72339245C>T	uc002jkm.3	+	5	540	c.402C>T	c.(400-402)GCC>GCT	p.A134A	KIF19_uc002jkj.2_Silent_p.A134A|KIF19_uc002jkk.2_Silent_p.A134A|KIF19_uc002jkl.2_Silent_p.A134A	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	134	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						TCTTCCGTGCCATCGAGGAGA	0.592													8	37					0	0	1	0	0
SLC9A3R1	9368	broad.mit.edu	37	17	72764748	72764748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72764748C>T	uc002jlo.2	+	6	1253	c.1030C>T	c.(1030-1032)CCG>TCG	p.P344S	SLC9A3R1_uc002jlp.2_Missense_Mutation_p.P188S	NM_004252	NP_004243	O14745	NHRF1_HUMAN	sodium/hydrogen exchanger regulatory factor 1	344					apoptosis|bile acid secretion|glutathione transport|microvillus assembly|negative regulation of cell proliferation|negative regulation of ERK1 and ERK2 cascade|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|protein complex assembly|regulation of protein kinase activity|regulation of sodium:hydrogen antiporter activity|renal absorption|Wnt receptor signaling pathway	actin cytoskeleton|apical plasma membrane|centrosome|endomembrane system|filopodium|intracellular membrane-bounded organelle|microvillus membrane|ruffle	beta-2 adrenergic receptor binding|beta-catenin binding|chloride channel regulator activity|growth factor receptor binding|PDZ domain binding|phosphatase binding|protein self-association				0						CAAACGGGCCCCGCAGATGGA	0.617													18	82					0	0	1	0	0
TMEM104	54868	broad.mit.edu	37	17	72832574	72832574	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72832574C>T	uc002jls.3	+	10	1401	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Silent_p.F413F	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	413	Helical; (Potential).					integral to membrane					0	all_lung(278;0.23)					TGGTGGCCTTCTGCACCCACG	0.672													26	34					0	0	1	0	0
FDXR	2232	broad.mit.edu	37	17	72862340	72862340	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72862340G>A	uc002jly.2	-	5	507	c.420C>T	c.(418-420)GCC>GCT	p.A140A	FDXR_uc010wri.1_Silent_p.A88A|FDXR_uc010wrj.1_Silent_p.A138A|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Silent_p.A140A|FDXR_uc002jmc.2_Silent_p.A141A|FDXR_uc010wrk.1_Silent_p.A171A|FDXR_uc010wrl.1_Silent_p.A183A|FDXR_uc002jma.2_Silent_p.A141A|FDXR_uc010wrm.1_Silent_p.A100A|FDXR_uc002jlz.2_Silent_p.A132A|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	140					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GAATTTCCAGGGCCCGATGGT	0.642													19	60					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72915871	72915871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72915871C>T	uc002jme.1	-	2	1243	c.1060G>A	c.(1060-1062)GAT>AAT	p.D354N	USH1G_uc010wro.1_Missense_Mutation_p.D251N	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	354					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					AGGCTGTCATCGTCCAGGCTG	0.677													40	52					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72916232	72916232	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72916232G>A	uc002jme.1	-	2	882	c.699C>T	c.(697-699)GTC>GTT	p.V233V	USH1G_uc010wro.1_Silent_p.V130V	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	233					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					CATCCTCGGAGACCTTGAAGG	0.667													11	75					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72926630	72926630	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72926630C>T	uc010wrp.1	+	7	989	c.900C>T	c.(898-900)TTC>TTT	p.F300F		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	300	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCTGCTCTTCGTGGTGGGGC	0.617													29	63					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72943188	72943188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72943188G>A	uc010wrr.1	+	6	1238	c.1238G>A	c.(1237-1239)AGC>AAC	p.S413N	OTOP3_uc010wrq.1_Missense_Mutation_p.S395N	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	413						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CCTACCCGCAGCCTGGATGTG	0.632													14	62					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72943431	72943431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72943431C>T	uc010wrr.1	+	6	1481	c.1481C>T	c.(1480-1482)CCC>CTC	p.P494L	OTOP3_uc010wrq.1_Missense_Mutation_p.P476L	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	494						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					GCTGAGCCTCCCCGCAGAGGC	0.657													22	29					0	0	1	0	0
OTOP3	347741	broad.mit.edu	37	17	72945424	72945424	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:72945424C>T	uc010wrr.1	+	7	1704	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F	OTOP3_uc010wrq.1_Silent_p.F550F	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	568	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AGATATGGTTCGCCATCGTCA	0.587													59	54					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73489821	73489821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:73489821G>A	uc002jnz.3	+	18	2506	c.2231G>A	c.(2230-2232)GGG>GAG	p.G744E	KIAA0195_uc010wsa.1_Missense_Mutation_p.G754E|KIAA0195_uc010wsb.1_Missense_Mutation_p.G384E|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	744					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGCCTGTCTGGGTATTGCTCT	0.602													20	87					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73493869	73493869	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:73493869C>T	uc002jnz.3	+	27	3690	c.3415C>T	c.(3415-3417)CTG>TTG	p.L1139L	KIAA0195_uc010wsa.1_Silent_p.L1149L|KIAA0195_uc010wsb.1_Silent_p.L779L|KIAA0195_uc002job.3_Silent_p.L147L	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	1139	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CAGCATCTCTCTGCTGGGGAA	0.527													30	27					0	0	1	0	0
CASKIN2	57513	broad.mit.edu	37	17	73497860	73497860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:73497860C>T	uc002joc.2	-	18	3845	c.3295G>A	c.(3295-3297)GGA>AGA	p.G1099R	CASKIN2_uc010wsc.1_Missense_Mutation_p.G1017R	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	1099	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCCTCTTACCTGCTCCGGGC	0.637													31	137					0	0	1	0	0
FBF1	85302	broad.mit.edu	37	17	73921466	73921466	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:73921466G>A	uc002jqc.2	-	12	1162	c.888C>T	c.(886-888)GTC>GTT	p.V296V	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Silent_p.V286V|FBF1_uc002jqd.1_Silent_p.V296V	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	296											0						CCTCAGAGGAGACCACAGTGG	0.597													10	33					0	0	1	0	0
FBF1	85302	broad.mit.edu	37	17	73923614	73923614	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:73923614C>T	uc002jqc.2	-	8	630	c.356_splice	c.e8-1	p.G119_splice	FBF1_uc002jqa.1_Splice_Site|FBF1_uc010wsp.1_Splice_Site_p.G109_splice|FBF1_uc002jqd.1_Splice_Site_p.G119_splice	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1												0						ATGGCACCCCCTGCAGGAAGC	0.572													5	9					0	0	1	0	0
EXOC7	23265	broad.mit.edu	37	17	74079752	74079752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:74079752G>A	uc002jqs.2	-	20	2280	c.2185C>T	c.(2185-2187)CGC>TGC	p.R729C	EXOC7_uc002jqp.1_3'UTR|EXOC7_uc010dgv.1_Missense_Mutation_p.R603C|EXOC7_uc002jqq.2_Missense_Mutation_p.R678C|EXOC7_uc010wsw.1_Missense_Mutation_p.R701C|EXOC7_uc010wsx.1_Missense_Mutation_p.R670C|EXOC7_uc002jqr.2_Missense_Mutation_p.R647C|EXOC7_uc010wsv.1_Missense_Mutation_p.R650C	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	729					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			TCGAAAAGGCGATCGATCATG	0.577													29	88					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74289888	74289888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:74289888G>A	uc002jrd.1	-	4	602	c.422C>T	c.(421-423)CCC>CTC	p.P141L	QRICH2_uc010wsz.1_Missense_Mutation_p.P67L|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	141							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						AGTACCAGAGGGGACCTTGCT	0.562													44	37					0	0	1	0	0
PRPSAP1	5635	broad.mit.edu	37	17	74326142	74326142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:74326142G>A	uc010wta.1	-	6	1063	c.617C>T	c.(616-618)TCT>TTT	p.S206F	PRPSAP1_uc010wtb.1_Missense_Mutation_p.S103F	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	177					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						AGCATCAGGAGACTTAGCTAC	0.423													46	91					0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74388010	74388010	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:74388010A>T	uc002jrm.3	-	16	3196	c.3131T>A	c.(3130-3132)CTG>CAG	p.L1044Q	UBE2O_uc002jrl.3_Missense_Mutation_p.L648Q	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	1044							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CCAGGTGCCCAGGAGGCTGAC	0.592													12	23					0	0	1	0	0
MGAT5B	146664	broad.mit.edu	37	17	74944723	74944723	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:74944723C>T	uc002jti.2	+	16	2312	c.2209C>T	c.(2209-2211)CTG>TTG	p.L737L	MGAT5B_uc002jth.2_Silent_p.L726L|MGAT5B_uc002jtj.2_Silent_p.L133L	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	728	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CCCTGCCAGGCTGCAGGTGCC	0.667													7	21					0	0	1	0	0
SEC14L1	6397	broad.mit.edu	37	17	75210084	75210084	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:75210084C>T	uc002jto.2	+	17	2394	c.2127C>T	c.(2125-2127)TCC>TCT	p.S709S	SEC14L1_uc010dhc.2_Silent_p.S709S|SEC14L1_uc010wth.1_Silent_p.S709S|SEC14L1_uc002jtm.2_Silent_p.S709S|SEC14L1_uc010wti.1_Silent_p.S675S|SEC14L1_uc010wtj.1_3'UTR|SEC14L1_uc002jtr.2_3'UTR	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	709					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						AGTCCCACTCCAGCTCCATGA	0.672													34	58					0	0	1	0	0
SEPT9	10801	broad.mit.edu	37	17	75398213	75398213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:75398213C>T	uc002jts.3	+	3	275	c.149C>T	c.(148-150)CCC>CTC	p.P50L	SEPT9_uc010wtk.1_Missense_Mutation_p.P31L|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Missense_Mutation_p.P32L|SEPT9_uc002jtv.2_Missense_Mutation_p.P43L|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	50					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			GTCCAGACTCCCCTACTCCGA	0.567													11	51					0	0	1	0	0
TNRC6C	57690	broad.mit.edu	37	17	76094577	76094577	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:76094577G>A	uc002jud.2	+	18	5060	c.4460G>A	c.(4459-4461)TGG>TAG	p.W1487*	TNRC6C_uc002juf.2_Nonsense_Mutation_p.W1523*	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1487	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			TCCTCCACCTGGGGTGCCAGC	0.592													16	79					0	0	1	0	0
TMC8	147138	broad.mit.edu	37	17	76134513	76134513	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:76134513C>T	uc002jup.2	+	13	1999	c.1617C>T	c.(1615-1617)CTC>CTT	p.L539L	TMC8_uc002juq.2_Silent_p.L316L|TMC8_uc002jur.1_5'UTR	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	539	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			TAGTGCTCCTCCTGGGCCTGC	0.637									Epidermodysplasia_Verruciformis_Familial_Clustering_of				58	71					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76456268	76456268	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:76456268C>T	uc010dhp.1	-	4	633	c.411G>A	c.(409-411)CAG>CAA	p.Q137Q	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCAGAGCCTCCTGGGCTGCCA	0.577													7	12					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	76497741	76497741	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:76497741G>A	uc002jvt.1	+	2		c.3200G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		GGAAGTGGCAGGGTCTGAAGT	0.622													12	41					0	0	1	0	0
ENPP7	339221	broad.mit.edu	37	17	77705082	77705082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:77705082G>A	uc002jxa.2	+	1	201	c.181G>A	c.(181-183)GGG>AGG	p.G61R		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	61					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGCCCGAGACGGGGTGAAGGC	0.647													10	37					0	0	1	0	0
GAA	2548	broad.mit.edu	37	17	78082402	78082402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:78082402C>T	uc002jxo.2	+	8	1372	c.1190C>T	c.(1189-1191)CCC>CTC	p.P397L	GAA_uc002jxp.2_Missense_Mutation_p.P397L|GAA_uc002jxq.2_Missense_Mutation_p.P397L	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	397					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	GCCCACTTCCCCCTGGTGAGT	0.692													13	36					0	0	1	0	0
CARD14	79092	broad.mit.edu	37	17	78169111	78169111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:78169111G>A	uc002jxw.1	+	10	1673	c.1478G>A	c.(1477-1479)GGG>GAG	p.G493E	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Missense_Mutation_p.G493E|CARD14_uc010wud.1_RNA|CARD14_uc002jxx.2_Missense_Mutation_p.G256E|CARD14_uc010dhu.1_Missense_Mutation_p.G291E	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	493					activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			GAGGACTTCGGGGAAGAACCC	0.652													5	26					0	0	1	0	0
NPTX1	4884	broad.mit.edu	37	17	78445558	78445558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:78445558C>T	uc002jyp.1	-	4	1209	c.1051G>A	c.(1051-1053)GGC>AGC	p.G351S		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	351	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			ACCAGCACGCCCTGGGGCTTG	0.657													14	34					0	0	1	0	0
AATK	9625	broad.mit.edu	37	17	79093188	79093188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:79093188G>A	uc010dia.2	-	13	4156	c.4076C>T	c.(4075-4077)TCC>TTC	p.S1359F	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	1359						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			ACCTCTCTTGGACTCGGCGTC	0.731													4	23					0	0	1	0	0
AZI1	22994	broad.mit.edu	37	17	79181018	79181018	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:79181018G>A	uc002jzp.1	-	4	494	c.294C>T	c.(292-294)TTC>TTT	p.F98F	AZI1_uc002jzn.1_Silent_p.F98F|AZI1_uc002jzo.1_Silent_p.F98F|AZI1_uc010wum.1_Silent_p.F98F	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	98					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			AGAGCATCAGGAAGTCTGTGG	0.632													9	38					0	0	1	0	0
SLC38A10	124565	broad.mit.edu	37	17	79225352	79225352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:79225352G>A	uc002jzz.1	-	14	2381	c.2006C>T	c.(2005-2007)CCT>CTT	p.P669L	SLC38A10_uc002jzy.1_Missense_Mutation_p.P587L|SLC38A10_uc002kab.2_Missense_Mutation_p.P669L	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	669					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTGCTCGCGAGGCTCGGGCGG	0.692													19	14					0	0	1	0	0
SLC38A10	124565	broad.mit.edu	37	17	79226133	79226133	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:79226133G>A	uc002jzz.1	-	13	2182	c.1807C>T	c.(1807-1809)CTG>TTG	p.L603L	SLC38A10_uc002jzy.1_Silent_p.L521L|SLC38A10_uc002kab.2_Silent_p.L603L	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	603					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CGAGGATGCAGGCCCCTGTCT	0.662													22	22					0	0	1	0	0
BAHCC1	57597	broad.mit.edu	37	17	79411764	79411764	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:79411764C>T	uc002kaf.2	+	6	2583	c.2583C>T	c.(2581-2583)CCC>CCT	p.P861P	BAHCC1_uc002kae.2_Silent_p.P60P	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	861	Pro-rich.						DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			GCCCTGTGCCCTCTGTCTTCC	0.716													20	27					0	0	1	0	0
FOXK2	3607	broad.mit.edu	37	17	80521235	80521235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:80521235C>T	uc002kfn.2	+	2	596	c.425C>T	c.(424-426)ACA>ATA	p.T142I	FOXK2_uc002kfm.1_Missense_Mutation_p.T142I|FOXK2_uc010diu.2_Missense_Mutation_p.T142I	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	142					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			TCCAGGTGCACATTCAGGTTC	0.557													5	23					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3581967	3581967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:3581967G>A	uc002kmf.2	-	5	1938	c.1871C>T	c.(1870-1872)ACT>ATT	p.T624I	DLGAP1_uc010wyz.1_Missense_Mutation_p.T624I|DLGAP1_uc002kme.1_Missense_Mutation_p.T322I|DLGAP1_uc010dkn.2_Missense_Mutation_p.T332I|DLGAP1_uc010wyw.1_Missense_Mutation_p.T330I|DLGAP1_uc010wyx.1_Missense_Mutation_p.T346I|DLGAP1_uc010wyy.1_Missense_Mutation_p.T308I|DLGAP1_uc002kmg.2_Missense_Mutation_p.T322I	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	624	Poly-Thr.				synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				ggtggtgacggtggcagtgTT	0.403													16	14					0	0	1	0	0
APCDD1	147495	broad.mit.edu	37	18	10471727	10471728	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:10471727_10471728AC>TT	uc002kom.3	+	3	797_798	c.443_444AC>TT	c.(442-444)CAC>CTT	p.H148L		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	148	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		TACCAGCTGCACAACGTCCAGG	0.644													42	5					0	0	1	0	0
C18orf19	125228	broad.mit.edu	37	18	13681863	13681863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:13681863C>T	uc010dlh.2	-	3	646	c.214G>A	c.(214-216)GAT>AAT	p.D72N	C18orf19_uc010dlg.2_Missense_Mutation_p.D72N|C18orf19_uc010dli.2_Missense_Mutation_p.D72N|C18orf19_uc002ksj.3_Missense_Mutation_p.D72N|C18orf19_uc010dlj.2_Intron	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	72						integral to membrane				breast(2)	2						GGATGAGCATCCAATGGCCTC	0.478													65	9					0	0	1	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478185	14478185	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:14478185C>T	uc010xai.1	-	3		c.1379G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TAGACCCATCCTTGCTCTGTG	0.453													13	21					0	0	1	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478439	14478439	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:14478439C>T	uc010xai.1	-	3		c.1125G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TCCCTGATATCGTGATGAACT	0.448													7	5					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14534953	14534953	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:14534953C>T	uc010dln.2	-	4	1318	c.864G>A	c.(862-864)GTG>GTA	p.V288V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	288	ANK 5.									skin(3)	3						TTAAAAATTTCACCACTTGCT	0.299													7	70					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542915	14542915	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:14542915C>T	uc010dln.2	-	1	685	c.231G>A	c.(229-231)ACG>ACA	p.T77T	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	77										skin(3)	3						CCACGTTGCTCGTGCCGCTCC	0.577													17	259					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851621	14851621	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:14851621G>A	uc010dlo.2	+	36	3501	c.3321G>A	c.(3319-3321)GTG>GTA	p.V1107V	ANKRD30B_uc010xal.1_Silent_p.V249V	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1192	Potential.									ovary(1)|skin(1)	2						AACACCAGGTGAAGGAAAATA	0.333													10	22					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21119817	21119817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:21119817G>A	uc002kum.3	-	18	3027	c.2753C>T	c.(2752-2754)TCC>TTC	p.S918F	NPC1_uc010xaz.1_Missense_Mutation_p.S651F|NPC1_uc010xba.1_Missense_Mutation_p.S763F	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	918					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CTGCACCAGGGAATCATTGTT	0.572													24	22					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21484001	21484001	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:21484001G>A	uc002kuq.2	+	50	6509	c.6423G>A	c.(6421-6423)GAG>GAA	p.E2141E	LAMA3_uc002kur.2_Silent_p.E2085E|LAMA3_uc002kus.3_Silent_p.E532E|LAMA3_uc002kut.3_Silent_p.E476E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2141	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTGTGGAGGAGGCAGAAAAGC	0.498													12	38					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28654727	28654727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28654727G>A	uc002kwl.3	-	12	2264	c.1810C>T	c.(1810-1812)CAT>TAT	p.H604Y	DSC2_uc002kwk.3_Missense_Mutation_p.H604Y	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	604	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GGTGGGCCATGGATAGGCTCA	0.413													5	22					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28712647	28712647	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28712647G>A	uc002kwn.2	-	14	2384	c.2122C>T	c.(2122-2124)CTG>TTG	p.L708L	DSC1_uc002kwm.2_Silent_p.L708L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	708	Helical; (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CATGTAAACAGAATACCTAAA	0.303													26	7					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28736029	28736029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28736029G>A	uc002kwn.2	-	4	710	c.448C>T	c.(448-450)CCA>TCA	p.P150S	DSC1_uc002kwm.2_Missense_Mutation_p.P150S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	150	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGTGGAAATGGACCCAACGAG	0.408													9	25					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28923499	28923499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28923499G>A	uc002kwp.2	+	12	1986	c.1774G>A	c.(1774-1776)GGA>AGA	p.G592R	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	592	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ATGTTCAGATGGAGCAATTCA	0.493													41	25					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934527	28934527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28934527G>A	uc002kwp.2	+	15	2580	c.2368G>A	c.(2368-2370)GAG>AAG	p.E790K	DSG1_uc010xbp.1_Missense_Mutation_p.E149K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	790	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TCAGGAAACAGAGCCCGTTGT	0.507													25	70					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934896	28934896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28934896C>T	uc002kwp.2	+	15	2949	c.2737C>T	c.(2737-2739)CAT>TAT	p.H913Y	DSG1_uc010xbp.1_Missense_Mutation_p.H272Y	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	913	Cytoplasmic (Potential).|Desmoglein repeat 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GACTATCCATCATCCTAGAGA	0.458													71	50					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28983586	28983586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:28983586G>A	uc002kwq.2	+	11	1760	c.1625G>A	c.(1624-1626)AGA>AAA	p.R542K	DSG4_uc002kwr.2_Missense_Mutation_p.R542K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	542	Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGGGATGTCAGATCAACAAAT	0.368													10	24					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29055971	29055971	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:29055971C>T	uc002kws.2	+	16	2857	c.2748C>T	c.(2746-2748)GTC>GTT	p.V916V	DSG3_uc002kwt.2_Silent_p.V198V	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	916	Desmoglein repeat 1.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTGGGTCTGTCCAGCCAGCTG	0.522													21	35					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29784308	29784308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:29784308G>A	uc002kxj.3	+	7	579	c.532G>A	c.(532-534)GAC>AAC	p.D178N		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	178	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						GATAATGTGGGACAGAATTCT	0.443													4	5					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31320165	31320165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:31320165C>T	uc010dmg.1	+	11	2852	c.2797C>T	c.(2797-2799)CGG>TGG	p.R933W	ASXL3_uc002kxq.2_Missense_Mutation_p.R640W	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	933					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TACACAGAGTCGGTTAGAAAC	0.393													24	22					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31324048	31324048	+	Silent	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:31324048C>G	uc010dmg.1	+	12	4291	c.4236C>G	c.(4234-4236)ACC>ACG	p.T1412T	ASXL3_uc002kxq.2_Silent_p.T1119T	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1412					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CACACCCGACCGTCGCAATGT	0.488											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	88					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31432951	31432951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:31432951G>A	uc010dmi.2	-	11	2001	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	NOL4_uc010xbs.1_Missense_Mutation_p.S306F|NOL4_uc002kxr.3_Missense_Mutation_p.S363F|NOL4_uc010xbt.1_Missense_Mutation_p.S517F|NOL4_uc010dmh.2_Missense_Mutation_p.S453F|NOL4_uc010xbu.1_Missense_Mutation_p.S527F|NOL4_uc002kxt.3_Missense_Mutation_p.S489F	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	591						nucleolus	RNA binding			ovary(3)	3						GCTGCTGGAGGATCCTGAGCT	0.403													13	37					0	0	1	0	0
DTNA	1837	broad.mit.edu	37	18	32462053	32462053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:32462053C>T	uc010dmn.1	+	20	2103	c.2102C>T	c.(2101-2103)CCC>CTC	p.P701L	DTNA_uc002kxw.2_Missense_Mutation_p.P644L|DTNA_uc010dmj.2_Missense_Mutation_p.P641L|DTNA_uc002kxz.2_Missense_Mutation_p.P648L|DTNA_uc002kxy.2_Missense_Mutation_p.P641L|DTNA_uc010xby.1_Missense_Mutation_p.P391L|DTNA_uc010xbz.1_Missense_Mutation_p.P410L|DTNA_uc010xca.1_Missense_Mutation_p.P353L|DTNA_uc002kye.2_Missense_Mutation_p.P349L	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	701					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GATGCAGATCCCTATGTGCAG	0.433													28	10					0	0	1	0	0
ZNF397OS	100101467	broad.mit.edu	37	18	32834140	32834140	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:32834140C>T	uc002kym.2	-	4	987	c.759G>A	c.(757-759)CAG>CAA	p.Q253Q	ZNF397_uc010dmq.2_Intron|ZNF397_uc010dmr.2_Intron|ZNF397_uc002kyj.2_Intron|ZNF397OS_uc002kyl.2_5'Flank|ZNF397OS_uc010xce.1_Silent_p.Q253Q	NM_001112734	NP_001106205	Q86W11	ZSC30_HUMAN	zinc finger protein 397 opposite strand	253					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AATGTCTGTCCTGGGAAGGAA	0.448													33	69					0	0	1	0	0
MOCOS	55034	broad.mit.edu	37	18	33779649	33779649	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:33779649C>T	uc002kzq.3	+	4	326	c.303C>T	c.(301-303)ATC>ATT	p.I101I		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	101					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CTTCCAGAATCCTGGCGCACT	0.537													23	52					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531530	42531530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:42531530C>T	uc010dni.2	+	4	2521	c.2225C>T	c.(2224-2226)CCC>CTC	p.P742L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	742						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TCCGAAGAACCCAAAACAGCC	0.562									Schinzel-Giedion_syndrome				7	1					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43311028	43311028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:43311028C>T	uc010xcn.1	+	5	519	c.200C>T	c.(199-201)TCC>TTC	p.S67F	SLC14A1_uc010dnk.2_Missense_Mutation_p.S123F|SLC14A1_uc002lbf.3_Missense_Mutation_p.S67F|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_5'UTR|SLC14A1_uc002lbh.3_Intron|SLC14A1_uc002lbi.3_Intron|SLC14A1_uc002lbj.3_Missense_Mutation_p.S123F|SLC14A1_uc002lbk.3_Missense_Mutation_p.S67F	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	67	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CGGGGCATATCCCAAGTGGTG	0.527													35	2					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43529513	43529513	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:43529513G>A	uc002lbm.2	-	5	1534	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	KIAA1632_uc002lbo.1_Silent_p.F478F	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	478					autophagy						0						GGTTTAGAAGGAAGAGGTGAT	0.398													9	15					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44013247	44013247	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:44013247C>T	uc002lcb.1	+	2	207	c.156C>T	c.(154-156)TTC>TTT	p.F52F	RNF165_uc002lby.1_5'UTR|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	52							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		CTCCCGACTTCCCGCTGGCCC	0.716													8	0					0	0	1	0	0
PIAS2	9063	broad.mit.edu	37	18	44470728	44470728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:44470728G>A	uc002lck.2	-	2	472	c.314C>T	c.(313-315)CCT>CTT	p.P105L	PIAS2_uc010dnp.2_5'UTR|PIAS2_uc002lcl.2_Missense_Mutation_p.P105L|PIAS2_uc010xda.1_Intron|PIAS2_uc002lcm.2_Missense_Mutation_p.P105L|PIAS2_uc002lcn.1_Missense_Mutation_p.P109L	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	105					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TGAAGTGGAAGGCAACGAGTG	0.488													9	10					0	0	1	0	0
PIAS2	9063	broad.mit.edu	37	18	44470763	44470763	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:44470763T>C	uc002lck.2	-	2	437	c.279A>G	c.(277-279)GAA>GAG	p.E93E	PIAS2_uc010dnp.2_5'UTR|PIAS2_uc002lcl.2_Silent_p.E93E|PIAS2_uc010xda.1_Intron|PIAS2_uc002lcm.2_Silent_p.E93E|PIAS2_uc002lcn.1_Silent_p.E97E	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	93					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding	p.E93K(1)		ovary(2)|breast(1)|skin(1)	4						CCAAGTCAGGTTCTACAGGTG	0.468													7	11					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44549192	44549192	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:44549192C>T	uc010dnr.2	-	1	1107	c.1107G>A	c.(1105-1107)GGG>GGA	p.G369G	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_001100817	NP_001094287	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	369	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CGGGCGTCCACCCTTCCAGAA	0.602													24	376					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555113	44555113	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:44555113C>T	uc010xdb.1	-	1	1337	c.1101G>A	c.(1099-1101)CTG>CTA	p.L367L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	367	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TCCACCCTTCCAGAACGGGTT	0.602													33	412					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566546	45566546	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:45566546C>T	uc002lda.2	-	1	949	c.933G>A	c.(931-933)AAG>AAA	p.K311K	ZBTB7C_uc002ldb.2_Silent_p.K311K|ZBTB7C_uc010dnu.2_Silent_p.K320K|ZBTB7C_uc010dnv.2_Silent_p.K333K|ZBTB7C_uc010dnw.2_Silent_p.K311K|ZBTB7C_uc010dnx.1_Silent_p.K311K|ZBTB7C_uc010dny.1_Silent_p.K311K|ZBTB7C_uc010dnz.1_Silent_p.K333K|ZBTB7C_uc010dob.1_Silent_p.K311K|ZBTB7C_uc010doc.1_Silent_p.K320K|ZBTB7C_uc010dod.1_Silent_p.K333K|ZBTB7C_uc010doe.1_Silent_p.K311K|ZBTB7C_uc010dof.1_Silent_p.K311K|ZBTB7C_uc010dog.1_Silent_p.K311K|ZBTB7C_uc010doh.1_Silent_p.K320K|ZBTB7C_uc010doi.1_Silent_p.K311K|ZBTB7C_uc010doj.1_Silent_p.K320K|ZBTB7C_uc010dok.1_Silent_p.K360K|ZBTB7C_uc010dol.1_Silent_p.K320K|ZBTB7C_uc010doa.1_Silent_p.K333K|ZBTB7C_uc010don.1_Silent_p.K319K|ZBTB7C_uc010doo.1_Silent_p.K311K|ZBTB7C_uc010dop.1_Silent_p.K311K|ZBTB7C_uc010doq.1_Silent_p.K320K|ZBTB7C_uc010dor.1_Silent_p.K333K|ZBTB7C_uc010dos.1_Silent_p.K311K|ZBTB7C_uc010dot.1_Silent_p.K311K|ZBTB7C_uc010dou.1_Silent_p.K320K|ZBTB7C_uc010dom.1_Silent_p.K320K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	311	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GGAACATGTCCTTGAAGAAGT	0.602													12	30					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278540	50278540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:50278540C>T	uc002lfe.1	+	2	795	c.208C>T	c.(208-210)CCA>TCA	p.P70S	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	70	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCGAGGAGTTCCAGTGATCAA	0.507													16	16					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50705364	50705364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:50705364C>T	uc002lfe.1	+	9	2038	c.1451C>T	c.(1450-1452)TCC>TTC	p.S484F	DCC_uc010xdr.1_Missense_Mutation_p.S332F|DCC_uc010dpf.1_Missense_Mutation_p.S139F	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	484	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane		p.S484S(1)		skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAGCCTGGGTCCCTTCAGCTC	0.453													15	23					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50912423	50912423	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:50912423C>T	uc002lfe.1	+	16	2957	c.2370C>T	c.(2368-2370)TCC>TCT	p.S790S	DCC_uc010xdr.1_Silent_p.S638S|DCC_uc010dpf.1_Silent_p.S445S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	790	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGTCAAGTTCCCATTATGTAA	0.348													11	14					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52896133	52896133	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:52896133G>A	uc002lfz.2	-	18	2424	c.1812C>T	c.(1810-1812)CTC>CTT	p.L604L	TCF4_uc002lfw.3_Silent_p.L448L|TCF4_uc010xdu.1_Silent_p.L474L|TCF4_uc010xdv.1_Silent_p.L474L|TCF4_uc002lfx.2_Silent_p.L537L|TCF4_uc010xdw.1_Silent_p.L474L|TCF4_uc002lfy.2_Silent_p.L562L|TCF4_uc010xdx.1_Silent_p.L580L|TCF4_uc010dph.1_Silent_p.L608L|TCF4_uc010xdy.1_Silent_p.L584L|TCF4_uc002lga.2_Silent_p.L710L|TCF4_uc002lgb.1_Silent_p.L444L|TCF4_uc010dpi.2_Silent_p.L614L|TCF4_uc002lfv.2_Silent_p.L387L	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	604	Helix-loop-helix motif.				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GGAGGATCAGGAGCTTGGTCT	0.622													12	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	18	54814861	54814861	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:54814861G>A	uc002lgm.2	+	1	526	c.318G>A	c.(316-318)GTG>GTA	p.V106V						RecName: Full=Protein FAM44C;																		GGCAGAGTGTGGTTCAGTCAG	0.478													8	9					0	0	1	0	0
ONECUT2	9480	broad.mit.edu	37	18	55104010	55104010	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:55104010G>A	uc002lgo.2	+	1	1094	c.1062G>A	c.(1060-1062)GCG>GCA	p.A354A		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	354	CUT.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		TCCCCCAGGCGATCTTTGCGC	0.602													13	19					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56182252	56182252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56182252G>A	uc002lhj.3	-	10	6216	c.6002C>T	c.(6001-6003)CCT>CTT	p.P2001L		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	2001	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GCCTTCCAGAGGCTGTGCTTC	0.478													13	16					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202459	56202459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56202459C>T	uc002lhj.3	-	5	5174	c.4960G>A	c.(4960-4962)GCA>ACA	p.A1654T	ALPK2_uc002lhk.1_Missense_Mutation_p.A985T	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1654							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GAAATAAATGCCAAGGTCTTC	0.468													26	31					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56204103	56204103	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56204103G>A	uc002lhj.3	-	5	3530	c.3316C>T	c.(3316-3318)CTG>TTG	p.L1106L	ALPK2_uc002lhk.1_Silent_p.L437L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1106							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCTCCAGACAGGTTATCAACC	0.517													65	98					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56247505	56247505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56247505G>A	uc002lhj.3	-	4	717	c.503C>T	c.(502-504)TCC>TTC	p.S168F		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	168							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGAATGGTTGGATTTGGAGGG	0.483													49	69					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56651670	56651670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56651670C>T	uc002lho.2	+	11	4425	c.3878C>T	c.(3877-3879)TCC>TTC	p.S1293F	ZNF532_uc002lhp.2_Missense_Mutation_p.S1291F|ZNF532_uc010xeg.1_Missense_Mutation_p.S1291F|ZNF532_uc002lhr.2_Missense_Mutation_p.S1291F|ZNF532_uc002lhs.2_Missense_Mutation_p.S1291F|ZNF532_uc010xeh.1_Missense_Mutation_p.S381F	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1293					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TTCATCAAATCCAAAAGGATG	0.433													16	10					0	0	1	0	0
SEC11C	90701	broad.mit.edu	37	18	56819826	56819826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:56819826G>A	uc002lht.2	+	3	312	c.256G>A	c.(256-258)GAA>AAA	p.E86K	SEC11C_uc010dpo.1_Missense_Mutation_p.E86K|SEC11C_uc010xej.1_Missense_Mutation_p.E86K	NM_033280	NP_150596	Q9BY50	SC11C_HUMAN	SEC11-like 3	86	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	serine-type peptidase activity				0		Colorectal(73;0.175)				AAATTTCCGGGAAGACCCAAT	0.438													40	67					0	0	1	0	0
PIGN	23556	broad.mit.edu	37	18	59814235	59814235	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:59814235G>A	uc002lii.3	-	9	1222	c.774C>T	c.(772-774)ATC>ATT	p.I258I	PIGN_uc002lij.3_Silent_p.I258I	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	258	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				CAGAGGTAAAGATAAATGTTG	0.323													8	10					0	0	1	0	0
KIAA1468	57614	broad.mit.edu	37	18	59912077	59912077	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:59912077C>T	uc002lil.2	+	11	1916	c.1701C>T	c.(1699-1701)TTC>TTT	p.F567F	KIAA1468_uc002lik.1_Silent_p.F567F|KIAA1468_uc010xel.1_Silent_p.F567F|KIAA1468_uc002lim.2_Silent_p.F211F	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	567							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				ACATACTTTTCAATTTGATCA	0.393													6	24					0	0	1	0	0
BCL2	596	broad.mit.edu	37	18	60985612	60985613	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:60985612_60985613GG>AA	uc002lit.1	-	2	780_781	c.287_288CC>TT	c.(286-288)ACC>ATT	p.T96I	BCL2_uc002liu.1_Missense_Mutation_p.T96I|BCL2_uc002liv.1_Missense_Mutation_p.T96I	NM_000633	NP_000624	P10415	BCL2_HUMAN	B-cell lymphoma protein 2 alpha isoform	96	BH3.			T -> A (in Ref. 8; AAD14111).	activation of pro-apoptotic gene products|anti-apoptosis|apoptosis in response to endoplasmic reticulum stress|B cell proliferation|B cell receptor signaling pathway|defense response to virus|female pregnancy|humoral immune response|induction of apoptosis by intracellular signals|negative regulation of cellular pH reduction|negative regulation of mitochondrial depolarization|negative regulation of neuron apoptosis|neuron apoptosis|positive regulation of B cell proliferation|positive regulation of cell growth|protein polyubiquitination|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|regulation of transmembrane transporter activity|release of cytochrome c from mitochondria|response to cytokine stimulus|response to DNA damage stimulus|response to drug|response to iron ion|response to nicotine|response to toxin	endoplasmic reticulum membrane|mitochondrial outer membrane|nuclear membrane|pore complex	BH3 domain binding|channel activity|protease binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|ubiquitin protein ligase binding			central_nervous_system(1)	1		all_hematologic(56;1.18e-20)|Prostate(75;0.0872)		Lung(128;0.0234)|READ - Rectum adenocarcinoma(59;0.0935)	Docetaxel(DB01248)|Fludarabine(DB01073)|Melatonin(DB01065)|Paclitaxel(DB01229)|Rasagiline(DB01367)	CCTGGCGGAGGGTCAGGTGGAC	0.619			T	IGH@	NHL|CLL								10	12					0	0	1	0	0
SERPINB11	89778	broad.mit.edu	37	18	61378629	61378629	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:61378629G>A	uc002ljk.3	+	3	290	c.228_splice	c.e3+1	p.K76_splice	SERPINB11_uc010xes.1_Splice_Site|SERPINB11_uc010dqd.2_Splice_Site|SERPINB11_uc002ljj.3_Splice_Site|SERPINB11_uc010dqe.2_Splice_Site|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11						regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				CTCACCTAAGGTATGATAATA	0.368													28	36					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61562542	61562542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:61562542G>A	uc010xeu.1	+	4	546	c.213G>A	c.(211-213)ATG>ATA	p.M71I	SERPINB2_uc002ljo.2_Missense_Mutation_p.M71I|SERPINB2_uc010dqh.2_Missense_Mutation_p.M1I|SERPINB2_uc002ljp.1_5'Flank|SERPINB2_uc002ljq.1_5'Flank	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	71					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TTACCCCCATGACTCCAGAGA	0.443													36	38					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569062	61569062	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:61569062G>A	uc010xeu.1	+	7	957	c.624G>A	c.(622-624)TGG>TGA	p.W208*	SERPINB2_uc002ljo.2_Nonsense_Mutation_p.W208*|SERPINB2_uc010dqh.2_Nonsense_Mutation_p.W138*|SERPINB2_uc002ljp.1_Nonsense_Mutation_p.W13*|SERPINB2_uc002ljq.1_Nonsense_Mutation_p.W13*	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	208					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	AAGGAAAGTGGAAAACTCCAT	0.398													23	25					0	0	1	0	0
CDH19	28513	broad.mit.edu	37	18	64211317	64211317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:64211317G>A	uc002lkc.1	-	7	1243	c.1105C>T	c.(1105-1107)CTT>TTT	p.L369F	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.L369F|CDH19_uc002lkd.2_Missense_Mutation_p.L369F	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	369	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				AGGAGGAAAAGAGGAGGCTCA	0.438													12	15					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65180720	65180720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:65180720G>A	uc002lke.1	-	2	2380	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	376						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				GCAGTTGAAGGAACCATCGGT	0.443													18	24					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65181846	65181846	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:65181846G>A	uc002lke.1	-	2	1254	c.30C>T	c.(28-30)ATC>ATT	p.I10I		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	Error:Variant_position_missing_in_Q8IZU8_after_alignment						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TTAACGCCATGATCCATGGGG	0.393													10	20					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70461373	70461373	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:70461373G>A	uc002lkw.2	-	6	902	c.618C>T	c.(616-618)ATC>ATT	p.I206I	NETO1_uc002lkx.1_Silent_p.I205I|NETO1_uc002lky.1_Silent_p.I206I	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	206	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GAGGTGCTCGGATGTACCACT	0.468													32	30					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72347196	72347196	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:72347196C>T	uc002llw.2	+	1	4278	c.4221C>T	c.(4219-4221)TCC>TCT	p.S1407S	ZNF407_uc010xfc.1_Silent_p.S1407S|ZNF407_uc010dqu.1_Silent_p.S1407S|ZNF407_uc002llu.2_Silent_p.S1406S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1407					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AGGGCAGTTCCATTGGTGAGT	0.458													9	21					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999231	72999231	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:72999231C>T	uc002lly.2	+	2	2297	c.1734C>T	c.(1732-1734)TCC>TCT	p.S578S		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	623						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		TCCTGCACTCCCCAGGGAGCC	0.652													6	17					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76755193	76755193	+	Missense_Mutation	SNP	C	T	T	rs149889901		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:76755193C>T	uc002lmt.2	+	2	3202	c.3202C>T	c.(3202-3204)CAC>TAC	p.H1068Y	SALL3_uc010dra.2_Missense_Mutation_p.H603Y	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1068					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		AGTGAACGGTCACGGCAAGGC	0.652													27	15					0	0	1	0	0
ATP9B	374868	broad.mit.edu	37	18	77089262	77089262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:77089262C>T	uc002lmx.2	+	16	1909	c.1895C>T	c.(1894-1896)CCC>CTC	p.P632L	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.P632L|ATP9B_uc002lmz.1_Missense_Mutation_p.P326L	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	632	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CAGCTGTTTCCCTTCACCTCC	0.592													23	34					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77227570	77227570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:77227570C>T	uc010xfg.1	+	8	2533	c.2080C>T	c.(2080-2082)CTT>TTT	p.L694F	NFATC1_uc002lnc.1_Missense_Mutation_p.L694F|NFATC1_uc010xff.1_3'UTR|NFATC1_uc002lnd.2_Missense_Mutation_p.L694F|NFATC1_uc002lne.2_Missense_Mutation_p.L222F|NFATC1_uc010xfh.1_Missense_Mutation_p.L694F|NFATC1_uc010xfi.1_Missense_Mutation_p.L681F|NFATC1_uc010xfj.1_Missense_Mutation_p.L222F|NFATC1_uc002lnf.2_Missense_Mutation_p.L681F|NFATC1_uc002lng.2_Missense_Mutation_p.L681F|NFATC1_uc010xfk.1_Missense_Mutation_p.L681F	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	694					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		TTTCACCTACCTTCCCGCCAA	0.537													14	12					0	0	1	0	0
C18orf22	79863	broad.mit.edu	37	18	77804284	77804284	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr18:77804284A>G	uc002lns.2	+	6	787	c.649A>G	c.(649-651)AGG>GGG	p.R217G	C18orf22_uc010drh.2_Silent_p.S188S|C18orf22_uc010dri.1_Intron|C18orf22_uc002lnt.2_Missense_Mutation_p.R50G|uc002lnu.2_5'Flank	NM_024805	NP_079081	Q8N0V3	RBFA_HUMAN	hypothetical protein LOC79863 precursor	217					rRNA processing	mitochondrion					0		all_cancers(4;3.21e-14)|all_epithelial(4;7.11e-09)|all_lung(4;0.00366)|Lung NSC(4;0.00683)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0545)|all_hematologic(56;0.15)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;6.46e-08)|BRCA - Breast invasive adenocarcinoma(31;0.00376)		AAATGATTTCAGGTGACGCAt	0.393													3	47					0	0	1	0	0
C19orf6	91304	broad.mit.edu	37	19	1011891	1011891	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:1011891G>A	uc002lqr.1	-	6	1088	c.942C>T	c.(940-942)TTC>TTT	p.F314F	uc002lqp.1_5'Flank|C19orf6_uc002lqq.1_RNA|C19orf6_uc002lqs.1_Silent_p.F314F	NM_001033026	NP_001028198	Q4ZIN3	MBRL_HUMAN	membralin isoform 1	314	Helical; (Potential).					cytoplasm|integral to membrane				pancreas(2)|breast(1)	3		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.0252)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCACTCACGAAGATGACCA	0.682													3	10					0	0	1	0	0
HMHA1	23526	broad.mit.edu	37	19	1080683	1080683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:1080683G>A	uc002lqz.1	+	16	2146	c.1915G>A	c.(1915-1917)GAC>AAC	p.D639N	HMHA1_uc010xgd.1_Missense_Mutation_p.D655N|HMHA1_uc010xge.1_Missense_Mutation_p.D507N|HMHA1_uc002lra.1_Missense_Mutation_p.D479N|HMHA1_uc002lrb.1_Missense_Mutation_p.D522N|HMHA1_uc002lrc.1_Missense_Mutation_p.D274N|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	639					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCCCAGGGGACTTTAAGAA	0.632													17	22					0	0	1	0	0
MIDN	90007	broad.mit.edu	37	19	1251902	1251902	+	Splice_Site	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:1251902T>C	uc002lrp.2	+	4	899	c.384_splice	c.e4+2	p.Q128_splice		NM_177401	NP_796375	Q504T8	MIDN_HUMAN	midnolin							nucleolus					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGACGCAGGTAAGACCTCGC	0.652													11	6					0	0	1	0	0
MIDN	90007	broad.mit.edu	37	19	1254385	1254385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:1254385C>T	uc002lrp.2	+	5	1119	c.604C>T	c.(604-606)CCC>TCC	p.P202S		NM_177401	NP_796375	Q504T8	MIDN_HUMAN	midnolin	202						nucleolus					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCCGAGTCCCCCCGGTGCC	0.766													2	1					0	0	1	0	0
AP3D1	8943	broad.mit.edu	37	19	2127179	2127179	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2127179G>A	uc002luz.2	-	9	1051	c.828C>T	c.(826-828)CTC>CTT	p.L276L	AP3D1_uc002luy.2_Silent_p.L185L|AP3D1_uc002lva.2_Silent_p.L276L	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	276	HEAT 5.				eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACATTCATAGAGGAGAGACA	0.602													13	31					0	0	1	0	0
LINGO3	645191	broad.mit.edu	37	19	2290687	2290687	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2290687G>A	uc010dsx.1	-	2	1217	c.1089C>T	c.(1087-1089)ATC>ATT	p.I363I	SPPL2B_uc010dsw.1_Intron|uc002lvo.1_5'UTR	NM_001101391	NP_001094861	P0C6S8	LIGO3_HUMAN	leucine rich repeat and Ig domain containing 3	363	Extracellular (Potential).|LRRCT.					integral to membrane					0						GACGCTGCACGATCCACAGCA	0.697													3	12					0	0	1	0	0
LINGO3	645191	broad.mit.edu	37	19	2291343	2291343	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2291343T>G	uc010dsx.1	-	2	561	c.433A>C	c.(433-435)ACT>CCT	p.T145P	SPPL2B_uc010dsw.1_Intron|uc002lvo.1_Missense_Mutation_p.S52R	NM_001101391	NP_001094861	P0C6S8	LIGO3_HUMAN	leucine rich repeat and Ig domain containing 3	145	LRR 4.|Extracellular (Potential).					integral to membrane					0						TCCTGGAAAGTGTAGTCCAGC	0.647													27	13					0	0	1	0	0
LSM7	51690	broad.mit.edu	37	19	2328389	2328389	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2328389C>A	uc002lvp.3	-	2	143	c.94G>T	c.(94-96)GAA>TAA	p.E32*	SPPL2B_uc010dsw.1_Intron|SPPL2B_uc010dsy.1_5'Flank|SPPL2B_uc010dsz.1_5'Flank|SPPL2B_uc002lvr.2_5'Flank|SPPL2B_uc002lvs.2_5'Flank	NM_016199	NP_057283	Q9UK45	LSM7_HUMAN	U6 snRNA-associated Sm-like protein LSm7	32					nuclear mRNA splicing, via spliceosome	nucleus|ribonucleoprotein complex	protein binding|U6 snRNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTCACCTTCGCGGCCTCCC	0.498													9	22					3.86212e-05	3.87079e-05	1	1	0
THOP1	7064	broad.mit.edu	37	19	2811693	2811693	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2811693C>T	uc002lwj.2	+	12	2024	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	THOP1_uc010xgz.1_Silent_p.F502F|THOP1_uc002lwk.2_Silent_p.F134F	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	623					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGACATGTTCCACACGCGCT	0.617													30	48					0	0	1	0	0
ZNF554	115196	broad.mit.edu	37	19	2834605	2834605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2834605C>T	uc002lwm.2	+	5	1570	c.1372C>T	c.(1372-1374)CAC>TAC	p.H458Y	ZNF554_uc002lwl.2_Missense_Mutation_p.H407Y	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	458	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGCGAACTCACACGGGCGA	0.547													15	22					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2878184	2878184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2878184C>T	uc002lwp.1	+	4	1315	c.1228C>T	c.(1228-1230)CTT>TTT	p.L410F	ZNF556_uc002lwq.2_Missense_Mutation_p.L409F	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	410					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCAGGCGGGCTTTGCTCTTC	0.453													24	72					0	0	1	0	0
TLE6	79816	broad.mit.edu	37	19	2993568	2993568	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:2993568T>C	uc002lwu.2	+	14	1556	c.1156T>C	c.(1156-1158)TTC>CTC	p.F386L	TLE6_uc002lwt.2_Missense_Mutation_p.F509L|TLE6_uc010dtg.2_Missense_Mutation_p.F509L|TLE6_uc002lwv.2_Missense_Mutation_p.F290L	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	386	WD 6.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCGTCAAGTTCTCCCCCTT	0.642													23	18					0	0	1	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600469	3600469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:3600469C>T	uc002lyg.1	-	2	378	c.164G>A	c.(163-165)GGG>GAG	p.G55E	TBXA2R_uc002lye.1_Missense_Mutation_p.G55E	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	55	Cytoplasmic (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	GTGCGAACCCCCCTGCCGCGC	0.701													13	19					0	0	1	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3633482	3633482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:3633482G>A	uc002lyj.1	-	17	2014	c.1957C>T	c.(1957-1959)CAC>TAC	p.H653Y	PIP5K1C_uc010xhq.1_Intron	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	653	Mediates interaction with TLN2.				axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GCGCTATAGTGGAGCGGGGAG	0.697													16	16					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3739045	3739045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:3739045G>A	uc010xhv.1	+	12	1643	c.1643G>A	c.(1642-1644)AGC>AAC	p.S548N	TJP3_uc010xhs.1_Missense_Mutation_p.S515N|TJP3_uc010xht.1_Missense_Mutation_p.S479N|TJP3_uc010xhu.1_Missense_Mutation_p.S524N|TJP3_uc010xhw.1_Missense_Mutation_p.S534N	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	529	SH3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGGGCAGAGCCACGCACGA	0.677													23	40					0	0	1	0	0
EEF2	1938	broad.mit.edu	37	19	3979426	3979426	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:3979426G>A	uc002lze.2	-	11	1697	c.1614C>T	c.(1612-1614)ATC>ATT	p.I538I		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	538						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGACTCCTCGATGATGCACT	0.642													34	45					0	0	1	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292752	4292752	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:4292752G>A	uc002lzx.1	-	5	739	c.693C>T	c.(691-693)CCC>CCT	p.P231P	TMIGD2_uc010dtv.1_Silent_p.P227P	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	231	Pro-rich.|Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGCTGGCGGGGGGCCGGTT	0.507													31	23					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4307975	4307975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:4307975C>T	uc002lzy.2	+	4	493	c.340C>T	c.(340-342)CCT>TCT	p.P114S	FSD1_uc010xie.1_Missense_Mutation_p.P101S|FSD1_uc010xif.1_Missense_Mutation_p.S97F|FSD1_uc002lzz.2_Missense_Mutation_p.P114S	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	114	COS.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGGACTTTCCTCAGGTGGG	0.378													8	22					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4513418	4513418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:4513418C>T	uc002mar.1	-	3	512	c.512G>A	c.(511-513)GGG>GAG	p.G171E	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	171	27 X 33 AA approximate tandem repeat.|3.					lipid particle|plasma membrane					0						CTGTACGGTCCCTTTGGCCAC	0.632													6	49					0	0	1	0	0
SEMA6B	10501	broad.mit.edu	37	19	4548095	4548095	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:4548095G>A	uc010duc.1	-	13	1583	c.1545C>T	c.(1543-1545)CCC>CCT	p.P515P	SEMA6B_uc010dud.2_Silent_p.P515P|SEMA6B_uc010xih.1_Intron	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	515	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACGCAGCGGGGGAAGGCAG	0.697													8	8					0	0	1	0	0
KDM4B	23030	broad.mit.edu	37	19	5131469	5131469	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:5131469C>T	uc002mbq.3	+	12	1924	c.1698C>T	c.(1696-1698)TCC>TCT	p.S566S	KDM4B_uc010xim.1_Silent_p.S600S|KDM4B_uc002mbr.3_Silent_p.S324S	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	566					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AACCAGTTTCCCCCATGGAGC	0.582													12	30					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5245826	5245826	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:5245826G>A	uc002mbv.2	-	10	1183	c.949C>T	c.(949-951)CTG>TTG	p.L317L	PTPRS_uc002mbu.1_Silent_p.L304L|PTPRS_uc010xin.1_Silent_p.L304L|PTPRS_uc002mbw.2_Silent_p.L304L|PTPRS_uc002mbx.2_Silent_p.L308L|PTPRS_uc002mby.2_Silent_p.L304L	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	317	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		ATGACGCCCAGGCTGGACATG	0.622													13	14					0	0	1	0	0
RFX2	5990	broad.mit.edu	37	19	6007026	6007026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6007026G>A	uc002meb.2	-	12	1668	c.1399C>T	c.(1399-1401)CCC>TCC	p.P467S	RFX2_uc002mec.2_Missense_Mutation_p.P442S|RFX2_uc002med.1_3'UTR	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	467					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						CACTTACTGGGGACCGGCCTC	0.617													15	29					0	0	1	0	0
RFX2	5990	broad.mit.edu	37	19	6040131	6040132	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6040131_6040132GG>AA	uc002meb.2	-	5	650_651	c.381_382CC>TT	c.(379-384)GTCCCC>GTTTCC	p.P128S	RFX2_uc002mec.2_Missense_Mutation_p.P128S|RFX2_uc010xiy.1_Missense_Mutation_p.P83S	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						CTGTGGGAGGGGACCGCTGGCG	0.683													22	31					0	0	1	0	0
ACER1	125981	broad.mit.edu	37	19	6312166	6312166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6312166C>T	uc002mel.2	-	3	422	c.344G>A	c.(343-345)GGG>GAG	p.G115E		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	115	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						CCACCTGTTCCCCCCAAGGAA	0.612													11	27					0	0	1	0	0
TNFSF9	8744	broad.mit.edu	37	19	6535057	6535057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6535057C>T	uc002mfh.2	+	3	783	c.745C>T	c.(745-747)CCT>TCT	p.P249S		NM_003811	NP_003802	P41273	TNFL9_HUMAN	tumor necrosis factor (ligand) superfamily,	249	Extracellular (Potential).				apoptosis|cell proliferation|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						AGCCGGACTCCCTTCACCGAG	0.632													7	16					0	0	1	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665331	6665332	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6665331_6665332CC>TT	uc002mfk.1	-	5	710_711	c.328_329GG>AA	c.(328-330)GGG>AAG	p.G110K	TNFSF14_uc002mfj.1_Missense_Mutation_p.G74K	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	110	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						TAACAGCGGCCCCCCGCTGCCG	0.569													4	9					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6679431	6679431	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6679431G>A	uc002mfm.2	-	37	4595	c.4533C>T	c.(4531-4533)TGC>TGT	p.C1511C	C3_uc002mfl.2_Silent_p.C247C	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1511					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CAGCACAGCGGCACAGTTCAT	0.572													77	66					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6694503	6694503	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6694503C>T	uc002mfm.2	-	24	3155	c.3093G>A	c.(3091-3093)ACG>ACA	p.T1031T	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1031					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCCACTGCTCCGTTTCATCCA	0.617													14	58					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6828179	6828179	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6828179C>T	uc002mfu.1	+	10	1117	c.1020C>T	c.(1018-1020)CTC>CTT	p.L340L	VAV1_uc010xjh.1_Silent_p.L308L|VAV1_uc010dva.1_Silent_p.L340L|VAV1_uc002mfv.1_Silent_p.L285L	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	340	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						ACCTCCTTCTCCAGGTGCCAG	0.572													13	30					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6833594	6833594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6833594G>A	uc002mfu.1	+	17	1763	c.1666G>A	c.(1666-1668)GAG>AAG	p.E556K	VAV1_uc010xjh.1_Missense_Mutation_p.E524K|VAV1_uc010dva.1_Missense_Mutation_p.E556K|VAV1_uc002mfv.1_Missense_Mutation_p.E501K	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	556	Phorbol-ester/DAG-type.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TGCACACAAGGAGTGTCTGGG	0.572													47	50					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6937593	6937593	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:6937593G>A	uc002mfw.2	+	20	2627	c.2589G>A	c.(2587-2589)ACG>ACA	p.T863T	EMR1_uc010dvc.2_Silent_p.T798T|EMR1_uc010dvb.2_Silent_p.T844T|EMR1_uc010xji.1_Silent_p.T722T|EMR1_uc010xjj.1_Silent_p.T686T	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	863	Cytoplasmic (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTGGGAAGACGAAGCCCAGCT	0.537													29	51					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7120680	7120680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:7120680C>T	uc002mgd.1	-	20	3719	c.3610G>A	c.(3610-3612)GCA>ACA	p.A1204T	INSR_uc002mge.1_Missense_Mutation_p.A1192T	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1204	Protein kinase.|Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GACTCCGGTGCCATCCACCGT	0.527													71	177					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7126627	7126627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:7126627G>A	uc002mgd.1	-	16	3090	c.2981C>T	c.(2980-2982)TCT>TTT	p.S994F	INSR_uc002mge.1_Missense_Mutation_p.S982F	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	994	Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGGGTTTGAAGAAGCGTAAAG	0.537													125	219					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7143015	7143015	+	Missense_Mutation	SNP	G	A	A	rs145643501		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:7143015G>A	uc002mgd.1	-	12	2463	c.2354C>T	c.(2353-2355)TCG>TTG	p.S785L	INSR_uc002mge.1_Missense_Mutation_p.S773L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	785	Fibronectin type-III 2.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CACGCTGGTCGAGGAAGTGTT	0.602													91	130					0	0	1	0	0
STXBP2	6813	broad.mit.edu	37	19	7707209	7707209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:7707209G>A	uc002mha.3	+	9	829	c.784G>A	c.(784-786)GAC>AAC	p.D262N	STXBP2_uc002mhb.3_Missense_Mutation_p.D259N|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.D273N|STXBP2_uc010dvk.2_Missense_Mutation_p.D230N|STXBP2_uc002mhc.3_Missense_Mutation_p.D30N|STXBP2_uc002mhe.1_5'Flank	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	262					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CATAGAGCAGGACACATACAG	0.612													20	32					0	0	1	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964850	7964850	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:7964850C>T	uc002mir.2	+	3	1544	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	481						integral to membrane				lung(1)|pancreas(1)	2						TGCAGGTCTTCCTGCGGGACC	0.647													8	14					0	0	1	0	0
TIMM44	10469	broad.mit.edu	37	19	8005991	8005991	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8005991G>C	uc002miz.2	-	2	139	c.137C>G	c.(136-138)CCA>CGA	p.P46R	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	46					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						ACTCACCAGTGGCAGCTCTCC	0.607													22	43					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8152827	8152827	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8152827G>A	uc002mjf.2	-	52	6522	c.6501C>T	c.(6499-6501)ATC>ATT	p.I2167I	FBN3_uc002mje.2_Silent_p.I6I	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2167	EGF-like 35; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGCATTCGTCGATGTCTGGGG	0.672													52	33					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8175759	8175759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8175759C>T	uc002mjf.2	-	33	4324	c.4303G>A	c.(4303-4305)GAA>AAA	p.E1435K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1435	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGGTCCAGTTCGTAGCCACCA	0.567													60	43					0	0	1	0	0
HNRNPM	4670	broad.mit.edu	37	19	8527463	8527463	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8527463A>G	uc010dwe.2	+	3	414	c.334A>G	c.(334-336)AGG>GGG	p.R112G	HNRNPM_uc010dwc.1_Missense_Mutation_p.R112G|HNRNPM_uc010xke.1_Missense_Mutation_p.R112G|HNRNPM_uc010dwd.2_Missense_Mutation_p.R112G|HNRNPM_uc002mka.2_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	112	RRM 1.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						AGGAAAGTCAAGGGTAAGTGT	0.428													44	35					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8590433	8590433	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8590433C>T	uc002mkg.2	-	25	2898	c.2784G>A	c.(2782-2784)AAG>AAA	p.K928K		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	928						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TGGCCATTCCCTTCCGCGTAG	0.612													23	35					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8604855	8604855	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8604855G>A	uc002mkg.2	-	16	1782	c.1668C>T	c.(1666-1668)CCC>CCT	p.P556P		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	556	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGGCGGTGCTGGGGCGCCCCT	0.637													20	22					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661077	8661077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8661077C>T	uc002mkj.1	-	11	1491	c.1217G>A	c.(1216-1218)GGA>GAA	p.G406E	ADAMTS10_uc002mkk.1_Missense_Mutation_p.G38E	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	406	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACAGCTGTTTCCCACGCCGTC	0.637													42	41					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808551	8808551	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8808551G>A	uc002mkl.2	-	1	622	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	167						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GCAGCGACTCGAAGGCCACCT	0.672													35	22					0	0	1	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841990	8841990	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:8841990C>T	uc010xkg.1	+	1	600	c.600C>T	c.(598-600)TCC>TCT	p.S200S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						TGGCGCTGTCCACCTCAGGGG	0.577											OREG0007662	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=OR2Z1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	16	63					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046005	9046005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9046005C>T	uc002mkp.2	-	5	35830	c.35626G>A	c.(35626-35628)GGC>AGC	p.G11876S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11878	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCAGTAAGCCTGTAGTCTCT	0.493													28	115					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047030	9047030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9047030G>A	uc002mkp.2	-	5	34805	c.34601C>T	c.(34600-34602)TCA>TTA	p.S11534L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11536	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGTCGTTGAAACAGCTGA	0.507													25	48					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9050067	9050067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9050067C>T	uc002mkp.2	-	5	31768	c.31564G>A	c.(31564-31566)GAA>AAA	p.E10522K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10524	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCATCATTTCTGTGGGGATT	0.507													117	285					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056254	9056254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9056254C>T	uc002mkp.2	-	3	31396	c.31192G>A	c.(31192-31194)GAT>AAT	p.D10398N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10400	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTCTGGTATCCAAAATGGGT	0.493													48	140					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058180	9058180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9058180G>A	uc002mkp.2	-	3	29470	c.29266C>T	c.(29266-29268)CCT>TCT	p.P9756S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9758	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGTCACAGGAAGAGGAGAG	0.473													13	20					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9059369	9059369	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9059369C>T	uc002mkp.2	-	3	28281	c.28077G>A	c.(28075-28077)AGG>AGA	p.R9359R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9361	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGATTCTTTCCTTGTGAGGG	0.517													32	90					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060190	9060190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9060190G>A	uc002mkp.2	-	3	27460	c.27256C>T	c.(27256-27258)CCT>TCT	p.P9086S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9088	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGCCCCAGGAGAACCTGTT	0.463													33	62					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062066	9062066	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9062066G>A	uc002mkp.2	-	3	25584	c.25380C>T	c.(25378-25380)TCC>TCT	p.S8460S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8462	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCCTGACATGGATGTTCCCC	0.507													36	97					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062157	9062157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9062157G>A	uc002mkp.2	-	3	25493	c.25289C>T	c.(25288-25290)GCC>GTC	p.A8430V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8432	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCCTCTGTGGCTGAGCTGAT	0.517													30	39					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062601	9062601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9062601G>A	uc002mkp.2	-	3	25049	c.24845C>T	c.(24844-24846)TCC>TTC	p.S8282F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8284	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAATGTAGAGGAAACAGGAGA	0.512													25	24					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062726	9062726	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9062726C>T	uc002mkp.2	-	3	24924	c.24720G>A	c.(24718-24720)GAG>GAA	p.E8240E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8242	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTGGTCATCTCTGAGTGTG	0.498													22	30					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9062910	9062910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9062910G>A	uc002mkp.2	-	3	24740	c.24536C>T	c.(24535-24537)TCC>TTC	p.S8179F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8181	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTTCTGTGGAAGTCTCTGG	0.507													17	49					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063117	9063117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9063117C>T	uc002mkp.2	-	3	24533	c.24329G>A	c.(24328-24330)AGA>AAA	p.R8110K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8112	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTGAATTCTGCTAGTCTC	0.493													31	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064409	9064409	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9064409G>A	uc002mkp.2	-	3	23241	c.23037C>T	c.(23035-23037)CCC>CCT	p.P7679P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7681	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTCACAAAGGGAGGGCTAG	0.547													20	27					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065944	9065945	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9065944_9065945CC>TT	uc002mkp.2	-	3	21705_21706	c.21501_21502GG>AA	c.(21499-21504)AAGGAC>AAAAAC	p.D7168N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7170	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGTGGTGTCCTTGCCAGTGG	0.51													41	50					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067148	9067148	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9067148C>T	uc002mkp.2	-	3	20502	c.20298G>A	c.(20296-20298)TCG>TCA	p.S6766S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6768	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTCGCCATCGAGTGTGTTC	0.483													58	143					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067300	9067300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9067300C>T	uc002mkp.2	-	3	20350	c.20146G>A	c.(20146-20148)GAA>AAA	p.E6716K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6718	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGATCACTTCAGTGGAGATG	0.498													120	107					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071745	9071745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9071745G>A	uc002mkp.2	-	3	15905	c.15701C>T	c.(15700-15702)TCC>TTC	p.S5234F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5236	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTGGGGTGGAAATTTTGCT	0.478													61	72					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072286	9072286	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9072286G>A	uc002mkp.2	-	3	15364	c.15160C>T	c.(15160-15162)CTG>TTG	p.L5054L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5056	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGAAATCAGGGAAGGTGTG	0.473													27	47					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076700	9076700	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9076700G>A	uc002mkp.2	-	3	10950	c.10746C>T	c.(10744-10746)ACC>ACT	p.T3582T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3583	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAAGACCAGGTGGAAGGGT	0.493													42	51					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085622	9085622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9085622G>A	uc002mkp.2	-	1	6397	c.6193C>T	c.(6193-6195)CCA>TCA	p.P2065S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2065	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTACTTGGCCAAGTTGTA	0.478													57	78					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9087347	9087347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9087347G>A	uc002mkp.2	-	1	4672	c.4468C>T	c.(4468-4470)CCA>TCA	p.P1490S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1490	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACATAGGTGGAAAAATAGCA	0.423													65	113					0	0	1	0	0
OR7G2	390882	broad.mit.edu	37	19	9212986	9212986	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9212986G>A	uc010xkk.1	-	1	997	c.997C>T	c.(997-999)CTG>TTG	p.L333L		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCACACCACAGAAGAGAAGGT	0.403													22	31					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9324970	9324970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9324970C>T	uc002mla.1	-	1	544	c.544G>A	c.(544-546)GCT>ACT	p.A182T		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGGACCTGAGCCGGTTCACAG	0.498													29	67					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325033	9325033	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9325033G>A	uc002mla.1	-	1	481	c.481C>T	c.(481-483)CTA>TTA	p.L161L		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TTCATCAGTAGAATATGAACC	0.527													40	26					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325100	9325100	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9325100G>A	uc002mla.1	-	1	414	c.414C>T	c.(412-414)CCC>CCT	p.P138P		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CACAGAGGCAGGGGTTCATGA	0.512													16	44					0	0	1	0	0
ZNF699	374879	broad.mit.edu	37	19	9406452	9406452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9406452G>A	uc002mlc.1	-	5	1628	c.1628C>T	c.(1627-1629)CCC>CTC	p.P543L		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	543	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGGGCTGAGGGATAAATAAA	0.413													10	20					0	0	1	0	0
ZNF177	7730	broad.mit.edu	37	19	9490783	9490783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9490783C>T	uc002mli.2	+	11	967	c.304C>T	c.(304-306)CCT>TCT	p.P102S	ZNF177_uc002mlj.2_5'UTR|ZNF177_uc002mlk.2_Missense_Mutation_p.P102S	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	102					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCAGAACATTCCTGGGGGAAA	0.373													15	13					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9577848	9577848	+	Missense_Mutation	SNP	C	T	T	rs149138221		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:9577848C>T	uc002mlp.1	-	10	1985	c.1775G>A	c.(1774-1776)CGA>CAA	p.R592Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R486Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	592	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.R592Q(1)		skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ACTGTGTCTTCGTAAATGTTT	0.408													18	72					0	0	1	0	0
S1PR2	9294	broad.mit.edu	37	19	10334520	10334520	+	Nonstop_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10334520T>C	uc002mnl.2	-	2	1173	c.1062A>G	c.(1060-1062)TGA>TGG	p.*354W		NM_004230	NP_004221	O95136	S1PR2_HUMAN	endothelial differentiation, sphingolipid	354					activation of MAPK activity|positive regulation of cell proliferation	integral to membrane|plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|central_nervous_system(1)	2						ACCCCCACCCTCAGACCACCG	0.652													14	19					0	0	1	0	0
ZGLP1	100125288	broad.mit.edu	37	19	10416141	10416141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10416141G>A	uc002mnw.3	-	3	1499	c.623C>T	c.(622-624)TCC>TTC	p.S208F	FDX1L_uc002mnx.1_RNA	NM_001103167	NP_001096637	P0C6A0	ZGLP1_HUMAN	GATA like protein-1	208	GATA-type.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGTCCGACAGGAAGCACAGCG	0.617													4	5					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10473091	10473091	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10473091G>A	uc002moc.3	-	11	1896	c.1518C>T	c.(1516-1518)CCC>CCT	p.P506P	TYK2_uc010dxe.2_Silent_p.P321P|TYK2_uc002mod.2_Silent_p.P506P	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	506	SH2; atypical.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			GCTGCTCAATGGGGAACTTTC	0.657													8	7					0	0	1	0	0
ATG4D	84971	broad.mit.edu	37	19	10663560	10663560	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10663560G>A	uc002mov.2	+	10	1363	c.1243_splice	c.e10-1	p.V415_splice	ATG4D_uc010xlh.1_Splice_Site_p.V352_splice|ATG4D_uc010dxh.2_Splice_Site|ATG4D_uc010dxi.2_Splice_Site|ATG4D_uc010dxj.2_Splice_Site_p.V82_splice	NM_032885	NP_116274	Q86TL0	ATG4D_HUMAN	APG4 autophagy 4 homolog D						autophagy|protein transport	cytoplasm	cysteine-type endopeptidase activity				0			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			CTTCCCGCCAGGTCCTCAGCT	0.602													29	40					0	0	1	0	0
SLC44A2	57153	broad.mit.edu	37	19	10738439	10738439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10738439C>T	uc002mpf.2	+	3	267	c.128C>T	c.(127-129)GCC>GTC	p.A43V	SLC44A2_uc002mpe.3_Missense_Mutation_p.A41V	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	43	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	CTGCTCCTGGCCATTGTGGGC	0.597													28	67					0	0	1	0	0
SLC44A2	57153	broad.mit.edu	37	19	10747352	10747352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10747352C>T	uc002mpf.2	+	16	1650	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	SLC44A2_uc002mpe.3_Missense_Mutation_p.S502F|SLC44A2_uc002mpg.1_Missense_Mutation_p.S224F|SLC44A2_uc002mph.2_Missense_Mutation_p.S53F	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	504	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	CACACAGGCTCCCTGGCCTTT	0.657													4	22					0	0	1	0	0
CARM1	10498	broad.mit.edu	37	19	11018788	11018788	+	Silent	SNP	G	A	A	rs141502552	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:11018788G>A	uc002mpz.2	+	3	546	c.420G>A	c.(418-420)CGG>CGA	p.R140R	CARM1_uc010dxn.2_RNA	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	140					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						TCAGCGAGCGGACGGAGGAGT	0.637													28	84					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11213363	11213363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:11213363G>A	uc002mqk.3	+	3	382	c.214G>A	c.(214-216)GAC>AAC	p.D72N	LDLR_uc010xlk.1_Missense_Mutation_p.D72N|LDLR_uc010xll.1_Intron|LDLR_uc010xlm.1_Intron|LDLR_uc010xln.1_Missense_Mutation_p.D72N|LDLR_uc010xlo.1_Missense_Mutation_p.D72N	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	72	Extracellular (Potential).|LDL-receptor class A 2.				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CAAATCCGGGGACTTCAGCTG	0.483													86	320					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11224057	11224057	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:11224057C>T	uc002mqk.3	+	9	1458	c.1290C>T	c.(1288-1290)GTC>GTT	p.V430V	LDLR_uc010xlk.1_Silent_p.V430V|LDLR_uc010xll.1_Silent_p.V389V|LDLR_uc010xlm.1_Silent_p.V283V|LDLR_uc010xln.1_Silent_p.V303V|LDLR_uc010xlo.1_Silent_p.V262V	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	430	LDL-receptor class B 1.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	GGAACGTGGTCGCTCTGGACA	0.607													130	149					0	0	1	0	0
RGL3	57139	broad.mit.edu	37	19	11508206	11508206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:11508206G>A	uc002mrp.2	-	17	1878	c.1814C>T	c.(1813-1815)CCC>CTC	p.P605L	RGL3_uc002mrn.2_Missense_Mutation_p.P369L|RGL3_uc002mrm.2_Missense_Mutation_p.P369L|RGL3_uc002mro.2_Missense_Mutation_p.P611L	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	605	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						CGCCGGGAGGGGGATTCGAGG	0.662													11	10					0	0	1	0	0
ZNF653	115950	broad.mit.edu	37	19	11598658	11598658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:11598658G>A	uc002mrz.1	-	4	673	c.620C>T	c.(619-621)TCT>TTT	p.S207F		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	207	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGACTCCTCAGAGTCAGAGGC	0.647													5	19					0	0	1	0	0
ZNF442	79973	broad.mit.edu	37	19	12460848	12460848	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:12460848T>C	uc002mtr.1	-	6	2162	c.1551A>G	c.(1549-1551)GAA>GAG	p.E517E	ZNF442_uc010xmk.1_Silent_p.E448E	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	517	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						ATGTTTTACATTCATAAGGTT	0.383													43	40					0	0	1	0	0
ZNF799	90576	broad.mit.edu	37	19	12501536	12501536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:12501536G>A	uc010dyt.2	-	4	1826	c.1676C>T	c.(1675-1677)CCC>CTC	p.P559L	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						ACACTCATAGGGTTTCTCTCT	0.418													20	60					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12575060	12575060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:12575060G>A	uc002mtv.3	-	4	1837	c.1676C>T	c.(1675-1677)CCT>CTT	p.P559L	ZNF709_uc002mtw.3_Missense_Mutation_p.P527L|ZNF709_uc002mtx.3_Missense_Mutation_p.P559L	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACACTCATAAGGTTTCTCTCC	0.418													36	54					0	0	1	0	0
KLF1	10661	broad.mit.edu	37	19	12996295	12996295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:12996295C>T	uc002mvo.2	-	2	812	c.749G>A	c.(748-750)GGG>GAG	p.G250E		NM_006563	NP_006554	Q13351	KLF1_HUMAN	erythroid Kruppel-like factor	250	Pro-rich.				erythrocyte differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0		Hepatocellular(1079;0.137)		GBM - Glioblastoma multiforme(1328;0.00016)|Lung(535;0.171)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCTGCAGTCCCCCCGAGTCC	0.706													5	6					0	0	1	0	0
DAND5	199699	broad.mit.edu	37	19	13080480	13080480	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:13080480C>T	uc002mwc.1	+	1	49	c.6C>T	c.(4-6)CTC>CTT	p.L2L	DAND5_uc010dyz.1_Silent_p.L32L	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	2						extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			agcagaTGCTCCTTGGCCAGC	0.507													33	55					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13418659	13418659	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:13418659G>A	uc010dze.2	-	15	2162	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	CACNA1A_uc010dzc.2_Silent_p.F167F|CACNA1A_uc002mwy.3_Silent_p.F641F|CACNA1A_uc010xne.1_Silent_p.F167F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	642	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCCTTCATCGAAATTAAACC	0.547													41	50					0	0	1	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941255	13941255	+	Silent	SNP	G	A	A	rs138305620	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:13941255G>A	uc002mxh.1	+	13	2550	c.2361G>A	c.(2359-2361)GCG>GCA	p.A787A	ZSWIM4_uc010xng.1_Silent_p.A710A	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	787							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			CCTTCGAGGCGGCCTACCAGA	0.706													41	65					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14159999	14159999	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:14159999C>T	uc002mxx.2	+	10	1698	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	425	Extracellular (Potential).|Fibronectin type-III 3.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						TTTGGCGACTCCAAGATGCCC	0.647											OREG0025303	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	34					0	0	1	0	0
LPHN1	22859	broad.mit.edu	37	19	14273562	14273562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:14273562C>T	uc010xnn.1	-	6	1362	c.1066G>A	c.(1066-1068)GAG>AAG	p.E356K	LPHN1_uc010xno.1_Missense_Mutation_p.E351K|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	356	Olfactomedin-like.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CTGACAGGCTCCTCGCGGTTG	0.577													33	34					0	0	1	0	0
CD97	976	broad.mit.edu	37	19	14512302	14512303	+	Nonsense_Mutation	DNP	TG	CT	CT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:14512302_14512303TG>CT	uc002myl.2	+	10	1125_1126	c.1002_1003TG>CT	c.(1000-1005)CTTGAA>CTCTAA	p.E335*	CD97_uc002mym.2_Nonsense_Mutation_p.E286*|CD97_uc002myn.2_Nonsense_Mutation_p.E242*	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	335	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						TCTCAAACCTTGAAGATATCAT	0.574													21	25					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14752422	14752422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:14752422C>T	uc002mzi.3	-	10	1205	c.1057G>A	c.(1057-1059)GAT>AAT	p.D353N	EMR3_uc010dzp.2_Missense_Mutation_p.D301N|EMR3_uc010xnv.1_Missense_Mutation_p.D227N	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	353	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						AGCACGGGATCCTCCTCCTGG	0.562													7	29					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14755050	14755050	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:14755050C>T	uc002mzi.3	-	9	1068	c.920G>A	c.(919-921)TGG>TAG	p.W307*	EMR3_uc010dzp.2_Nonsense_Mutation_p.W255*|EMR3_uc010xnv.1_Nonsense_Mutation_p.W181*	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	307	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TGTGCTCTTCCAGTAGACACA	0.433													41	35					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15073080	15073080	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:15073080G>A	uc002naa.1	-	5	677	c.669C>T	c.(667-669)TCC>TCT	p.S223S	SLC1A6_uc010dzu.1_Silent_p.S223S|SLC1A6_uc010xod.1_Silent_p.S159S|SLC1A6_uc002nab.2_Silent_p.S223S|SLC1A6_uc002nac.2_Silent_p.S223S	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	223	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GAGGAGGCATGGAGGCACCCG	0.562													43	77					0	0	1	0	0
CASP14	23581	broad.mit.edu	37	19	15166846	15166846	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:15166846G>A	uc010dzv.1	+	7	983	c.675G>A	c.(673-675)AGG>AGA	p.R225R	CASP14_uc002naf.2_Silent_p.R225R	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	225					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						GAAAAGCAAGGAAAACGAACC	0.512													7	9					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15308372	15308372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:15308372C>T	uc002nan.2	-	2	212	c.136G>A	c.(136-138)GGA>AGA	p.G46R	NOTCH3_uc002nao.1_Missense_Mutation_p.G46R	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	46	Extracellular (Potential).|EGF-like 1.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CACGGGCTTCCGTCCAGGCAA	0.672													8	29					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990627	15990627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:15990627G>A	uc002nbs.1	-	10	1246	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	CYP4F2_uc010xot.1_Missense_Mutation_p.S250F	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	399					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GACATGGCGGGAGATGACCGG	0.637													59	55					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16035587	16035587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:16035587C>T	uc002nbu.2	-	6	667	c.631G>A	c.(631-633)GAA>AAA	p.E211K	CYP4F11_uc010eab.1_Missense_Mutation_p.E211K|CYP4F11_uc002nbt.2_Missense_Mutation_p.E211K	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	211					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CAATTGCTTTCAAAGCTGAAG	0.547													23	62					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16275693	16275693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:16275693C>T	uc002nds.2	-	5	378	c.378G>A	c.(376-378)TGG>TGA	p.W126*	CIB3_uc010eae.2_Nonsense_Mutation_p.W65*|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Nonsense_Mutation_p.W77*	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	126	EF-hand 2.|1 (Potential).						calcium ion binding			ovary(1)	1						GCTCCAGGTCCCACGCACAAA	0.597													15	64					0	0	1	0	0
EPS15L1	58513	broad.mit.edu	37	19	16536010	16536010	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:16536010G>A	uc002ndz.1	-	9	682	c.676C>T	c.(676-678)CTG>TTG	p.L226L	EPS15L1_uc002ndx.2_Silent_p.L226L|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Silent_p.L116L|EPS15L1_uc010xpf.1_Silent_p.L129L|EPS15L1_uc002nea.1_Silent_p.L226L|EPS15L1_uc010eah.1_Silent_p.L226L|EPS15L1_uc002neb.1_Silent_p.L72L|EPS15L1_uc002nec.1_Silent_p.L226L	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	226					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						CTGGCAGGCAGGACGGGGACG	0.687													22	66					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860024	16860024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:16860024G>A	uc002neu.3	+	6	993	c.571G>A	c.(571-573)GAG>AAG	p.E191K	NWD1_uc002net.3_Missense_Mutation_p.E56K|NWD1_uc002nev.3_5'UTR			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	191							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CTTCCTTAGAGAGATCCAAGA	0.587													34	35					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16861050	16861050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:16861050C>T	uc002neu.3	+	6	2019	c.1597C>T	c.(1597-1599)CCA>TCA	p.P533S	NWD1_uc002net.3_Missense_Mutation_p.P398S|NWD1_uc002nev.3_Missense_Mutation_p.P327S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	533	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GTGTGGGAACCCAGGGCGGCT	0.642													12	53					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17100582	17100582	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17100582C>T	uc002nfb.2	-	13	1440	c.1408_splice	c.e13-1	p.T470_splice		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain							extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TCACCTTGGTCTGAGAAGAGA	0.582													9	24					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17476724	17476724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17476724C>T	uc002ngk.1	-	3	600	c.550G>A	c.(550-552)GAA>AAA	p.E184K		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	184	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						AGCACGCTTTCCTTATCCTTA	0.542													15	30					0	0	1	0	0
SLC27A1	376497	broad.mit.edu	37	19	17611306	17611306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17611306G>A	uc002ngu.1	+	9	1386	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	SLC27A1_uc010xpp.1_Missense_Mutation_p.E267K|SLC27A1_uc002ngv.1_Missense_Mutation_p.E48K	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	446	Sufficient for oligomerization (By similarity).|Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						CTCCCTAGGGGAGCCTGGCCT	0.677													8	8					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17722638	17722638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17722638C>T	uc002nhd.2	-	41	4849	c.4849G>A	c.(4849-4851)GAA>AAA	p.E1617K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1529					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						ACAGAGACTTCACCCACAGGG	0.542													19	51					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17752324	17752324	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17752324G>A	uc002nhd.2	-	21	2778	c.2778C>T	c.(2776-2778)GTC>GTT	p.V926V		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	838					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GGATCTTCACGACCCCATTGT	0.577													25	34					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17780453	17780453	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:17780453G>A	uc002nhd.2	-	6	567	c.567C>T	c.(565-567)TCC>TCT	p.S189S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	101					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TGATGACCTGGGAGTCCAGCG	0.617													7	16					0	0	1	0	0
PIK3R2	5296	broad.mit.edu	37	19	18273088	18273088	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18273088G>A	uc002nia.1	+	8	1490	c.978G>A	c.(976-978)CAG>CAA	p.Q326Q	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	326					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CCTCCCTGCAGGATGCTGAGT	0.637													9	10					0	0	1	0	0
PIK3R2	5296	broad.mit.edu	37	19	18279579	18279579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18279579G>A	uc002nia.1	+	15	2364	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	618					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CCCGCACCACGAGGAACGCAC	0.662											OREG0025359	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	26					0	0	1	0	0
RAB3A	5864	broad.mit.edu	37	19	18308374	18308374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18308374G>A	uc002nie.2	-	5	738	c.569C>T	c.(568-570)TCG>TTG	p.S190L		NM_002866	NP_002857	P20336	RAB3A_HUMAN	RAB3A, member RAS oncogene family	190					glutamate secretion|protein transport|small GTPase mediated signal transduction	clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|plasma membrane|synaptic vesicle	GTP binding|GTPase activity				0						CGTGTCCAACGACTCGGACAT	0.607													20	30					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18377373	18377373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18377373G>A	uc002nin.2	-	3	1193	c.977C>T	c.(976-978)CCC>CTC	p.P326L	KIAA1683_uc010ebn.2_Missense_Mutation_p.P326L|KIAA1683_uc010xqe.1_Missense_Mutation_p.P280L	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	326						mitochondrion				ovary(2)	2						TATCTGGAAGGGGGCTTTGGG	0.567													34	47					0	0	1	0	0
LRRC25	126364	broad.mit.edu	37	19	18507256	18507256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18507256C>T	uc002niw.2	-	1	1160	c.518G>A	c.(517-519)GGG>GAG	p.G173E	LRRC25_uc002nix.2_Missense_Mutation_p.G173E	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	173	Helical; (Potential).					integral to membrane					0						AAGCAGGCACCCGCTGACCAC	0.647													16	23					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18870861	18870861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:18870861C>T	uc002nkb.3	+	8	797	c.709C>T	c.(709-711)CCC>TCC	p.P237S	CRTC1_uc010ebv.2_Missense_Mutation_p.P253S|CRTC1_uc010ebw.2_Missense_Mutation_p.P102S|CRTC1_uc002nkc.3_Missense_Mutation_p.P102S	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	237					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						AGCCCTGATCCCCGCCACCCA	0.687													44	55					0	0	1	0	0
MEF2B	100271849	broad.mit.edu	37	19	19257959	19257959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:19257959C>T	uc002nlm.2	-	5	541	c.427G>A	c.(427-429)GTA>ATA	p.V143I	MEF2B_uc002nln.2_Missense_Mutation_p.V190I|MEF2B_uc002nll.2_Missense_Mutation_p.V143I|LOC729991-MEF2B_uc010xqo.1_Missense_Mutation_p.V143I|LOC729991-MEF2B_uc010xqp.1_Missense_Mutation_p.V143I|LOC729991-MEF2B_uc002nlo.2_Missense_Mutation_p.V143I|LOC729991-MEF2B_uc002nlp.2_Missense_Mutation_p.V143I|MEF2B_uc002nlk.2_Missense_Mutation_p.V146I	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			GCCCCGTATACCACATCTGGG	0.652													3	9					0	0	1	0	0
RFXANK	8625	broad.mit.edu	37	19	19308364	19308364	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:19308364C>T	uc002nls.2	+	6	877	c.372C>T	c.(370-372)GGC>GGT	p.G124G	RFXANK_uc002nlt.2_Silent_p.G101G|RFXANK_uc002nlu.2_Silent_p.G102G|RFXANK_uc002nlv.2_Silent_p.G124G|RFXANK_uc002nlw.2_Silent_p.G123G	NM_003721	NP_003712	O14593	RFXK_HUMAN	regulatory factor X-associated	124	ANK 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2			Epithelial(12;0.00228)			ACGAGCGCGGCTTCACCCCCC	0.652													14	25					0	0	1	0	0
PBX4	80714	broad.mit.edu	37	19	19681040	19681040	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:19681040G>A	uc002nmy.2	-	4	511	c.510C>T	c.(508-510)TCC>TCT	p.S170S	PBX4_uc010xqz.1_RNA|PBX4_uc010xra.1_Silent_p.S5S	NM_025245	NP_079521	Q9BYU1	PBX4_HUMAN	pre-B-cell leukemia homeobox 4	170							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2						TCTCCTTAGGGGAGACAGGCC	0.617													16	36					0	0	1	0	0
ZNF90	7643	broad.mit.edu	37	19	20216075	20216075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:20216075G>A	uc002nor.2	+	3	315	c.176G>A	c.(175-177)GGA>GAA	p.G59E	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_RNA	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	59	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTGGAGCAAGGAAAAAAACCC	0.398													13	36					0	0	1	0	0
ZNF493	284443	broad.mit.edu	37	19	21606755	21606755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:21606755C>T	uc002npx.2	+	2	1190	c.910C>T	c.(910-912)CCC>TCC	p.P304S	ZNF493_uc002npw.2_Missense_Mutation_p.P432S|ZNF493_uc002npy.2_Missense_Mutation_p.P304S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	304					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGGAGAGAAACCCTACAAATG	0.348													10	7					0	0	1	0	0
ZNF429	353088	broad.mit.edu	37	19	21712583	21712583	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:21712583C>T	uc002nqd.1	+	2	264	c.127C>T	c.(127-129)CTG>TTG	p.L43L	ZNF429_uc010ecu.1_Silent_p.L43L	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	43	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTTGGTCTTCCTGGGTGAGAA	0.373													23	64					0	0	1	0	0
ZNF429	353088	broad.mit.edu	37	19	21713414	21713414	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:21713414C>T	uc002nqd.1	+	3	291	c.154C>T	c.(154-156)CTA>TTA	p.L52L	ZNF429_uc010ecu.1_Silent_p.L52L	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	52	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TAAGCCAGACCTAATCACTTG	0.368													13	22					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22155011	22155011	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22155011T>A	uc002nqp.2	-	5	2674	c.2525A>T	c.(2524-2526)GAG>GTG	p.E842V	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTAGAATTTCTCTCCAGCATG	0.363													8	12					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22170022	22170022	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22170022G>A	uc002nqp.2	-	3	371	c.222C>T	c.(220-222)TCC>TCT	p.S74S	ZNF208_uc002nqo.1_Silent_p.S74S|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACCTACCTGGGGATTCTTCCA	0.438													6	19					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22255733	22255733	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22255733C>T	uc010ecx.2	+	2	295	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ZNF257_uc010ecy.2_Silent_p.F10F	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	42	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACCTGGTCTTCCTGGGTGAGG	0.358													26	76					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363619	22363619	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22363619C>T	uc002nqs.1	-	3	1218	c.900G>A	c.(898-900)AAG>AAA	p.K300K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	300	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TATGAATTCTCTTATGTTCCA	0.438													18	39					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22364041	22364041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22364041C>T	uc002nqs.1	-	3	796	c.478G>A	c.(478-480)GAA>AAA	p.E160K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TAAATTCTTTCATGTTGAGAT	0.328													39	24					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22574525	22574525	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22574525G>A	uc002nqt.2	-	4	1634	c.1512C>T	c.(1510-1512)CAC>CAT	p.H504H		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	504	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				GTGTAGTAAGGTGTGAGGACT	0.388													18	17					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22574744	22574744	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22574744C>T	uc002nqt.2	-	4	1415	c.1293G>A	c.(1291-1293)GAG>GAA	p.E431E		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	431					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TGTAGGGCTTCTCTCCAGTAT	0.378													5	6					0	0	1	0	0
ZNF492	57615	broad.mit.edu	37	19	22847042	22847042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22847042C>T	uc002nqw.3	+	4	815	c.571C>T	c.(571-573)CAT>TAT	p.H191Y		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	191	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				TAAAAGAATTCATACTGGAAA	0.368													6	14					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22939282	22939282	+	Silent	SNP	C	T	T	rs74170735		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22939282C>T	uc010xrh.1	-	7	2889	c.2889G>A	c.(2887-2889)AGG>AGA	p.R963R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TATGAATTATCCTATGTTTAG	0.353													7	13					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22939861	22939861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22939861G>A	uc010xrh.1	-	6	2470	c.2470C>T	c.(2470-2472)CAT>TAT	p.H824Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCCCTAGTATGAATTAGCTTA	0.378													16	70					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940309	22940309	+	Missense_Mutation	SNP	G	A	A	rs71357942		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22940309G>A	uc010xrh.1	-	5	2129	c.2129C>T	c.(2128-2130)TCC>TTC	p.S710F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.333													6	21					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941681	22941681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:22941681C>T	uc010xrh.1	-	5	757	c.757G>A	c.(757-759)GAA>AAA	p.E253K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CCACATTCTTCACATTTGTAG	0.383													11	25					0	0	1	0	0
ZNF675	171392	broad.mit.edu	37	19	23845935	23845935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:23845935G>A	uc002nri.2	-	2	211	c.29C>T	c.(28-30)GCC>GTC	p.A10V		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	10	KRAB.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GAATTCTATGGCCACATCCCT	0.393													12	65					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23926527	23926527	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:23926527T>C	uc002nrk.3	-	4	1967	c.1825A>G	c.(1825-1827)AAG>GAG	p.K609E	ZNF681_uc002nrl.3_Missense_Mutation_p.K540E|ZNF681_uc002nrj.3_Missense_Mutation_p.K540E	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	609	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TGAATTTTCTTATGTCCAGTA	0.338													2	10					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23927174	23927174	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:23927174G>T	uc002nrk.3	-	4	1320	c.1178C>A	c.(1177-1179)CCC>CAC	p.P393H	ZNF681_uc002nrl.3_Missense_Mutation_p.P324H|ZNF681_uc002nrj.3_Missense_Mutation_p.P324H	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	393					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ACATTTGTAGGGTTTCTCTCC	0.408													15	18					7.93312e-07	7.96433e-07	1	1	0
RPSAP58	388524	broad.mit.edu	37	19	24010564	24010564	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:24010564C>T	uc002nrn.2	+	4	1024	c.601C>T	c.(601-603)CTG>TTG	p.L201L		NM_002295	NP_002286			ribosomal protein SA												0						CATGCCTGATCTGTACTTCTA	0.527													7	11					0	0	1	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345419	24345419	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:24345419C>T	uc010edb.1	-	1		c.831G>A				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						AGCACAGATTCCTTTAGTGGT	0.428													42	128					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934969	30934969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:30934969C>T	uc002nsu.1	+	2	638	c.500C>T	c.(499-501)GCG>GTG	p.A167V	ZNF536_uc010edd.1_Missense_Mutation_p.A167V	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	167	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GACCACAGGGCGGCGCAGAAG	0.657													6	29					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039120	31039120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31039120C>T	uc002nsu.1	+	4	2732	c.2594C>T	c.(2593-2595)TCC>TTC	p.S865F	ZNF536_uc010edd.1_Missense_Mutation_p.S865F	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	865					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGGGTTCTCTCCTCTGGAGAT	0.582													44	36					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039377	31039377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31039377G>A	uc002nsu.1	+	4	2989	c.2851G>A	c.(2851-2853)GGA>AGA	p.G951R	ZNF536_uc010edd.1_Missense_Mutation_p.G951R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	951					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAAAGTCCACGGAGTGGATGG	0.532													33	86					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039900	31039900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31039900G>A	uc002nsu.1	+	4	3512	c.3374G>A	c.(3373-3375)GGG>GAG	p.G1125E	ZNF536_uc010edd.1_Missense_Mutation_p.G1125E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GTTGGCTCAGGGGCCTCCAGT	0.547													35	23					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	31039926	31039926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31039926G>A	uc002nsu.1	+	4	3538	c.3400G>A	c.(3400-3402)GAG>AAG	p.E1134K	ZNF536_uc010edd.1_Missense_Mutation_p.E1134K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCCCAACAAGGAGCCTGATGG	0.532													11	35					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31769133	31769133	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31769133G>A	uc002nsy.3	-	2	1631	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	522					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					AGGATTTGAGGATATCAAGCC	0.507													43	104					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770617	31770617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:31770617C>T	uc002nsy.3	-	2	147	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	28					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TCTAAACCTTCGTCCACCAGG	0.468													24	52					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33493201	33493201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:33493201C>T	uc002nuf.2	-	9	1123	c.1057G>A	c.(1057-1059)GCG>ACG	p.A353T	RHPN2_uc010xro.1_Missense_Mutation_p.A202T|RHPN2_uc002nue.2_Missense_Mutation_p.A83T	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	353	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding	p.A353T(2)		central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					GCCAGGGCCGCGTAGTGGTGG	0.642													6	50					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33638555	33638555	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:33638555A>G	uc002nui.2	+	4	559	c.481A>G	c.(481-483)ATT>GTT	p.I161V		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	161	WD 2.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TTCCAGAGTCATTGCCGCATC	0.378													14	27					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35832794	35832794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:35832794C>T	uc010edt.2	+	9	2038	c.1961C>T	c.(1960-1962)TCG>TTG	p.S654L	CD22_uc010xst.1_Missense_Mutation_p.S482L|CD22_uc010edu.2_Missense_Mutation_p.S566L|CD22_uc010edv.2_Missense_Mutation_p.S654L|CD22_uc002nzb.3_Missense_Mutation_p.S477L|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	654	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GTCCAGCACTCGGGTGCCTAC	0.587													31	37					0	0	1	0	0
FFAR3	2865	broad.mit.edu	37	19	35850311	35850311	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:35850311C>T	uc002nzd.2	+	2	594	c.519C>T	c.(517-519)TTC>TTT	p.F173F	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	173	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			ACCTGGAGTTCCGGAAGGACC	0.607													20	64					0	0	1	0	0
ZBTB32	27033	broad.mit.edu	37	19	36205574	36205574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36205574C>T	uc002oay.2	+	2	256	c.46C>T	c.(46-48)CGG>TGG	p.R16W	ZBTB32_uc002oaz.2_RNA	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	16					DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGCTCTGATCGGCTGGTACA	0.602													82	117					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36222831	36222832	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36222831_36222832CC>TT	uc010eei.2	+	28	5460_5461	c.5460_5461CC>TT	c.(5458-5463)CCCCCA>CCTTCA	p.P1821S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1821					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTGAGGACCCCCCACTGGACAC	0.624													16	20					0	0	1	0	0
MLL4	9757	broad.mit.edu	37	19	36223190	36223190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36223190C>T	uc010eei.2	+	29	5740	c.5740C>T	c.(5740-5742)CGT>TGT	p.R1914C		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1914					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGACGTTCCCGTCGTCCCAG	0.642													3	7					0	0	1	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36271327	36271327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36271327G>A	uc002obr.1	+	8	714	c.629G>A	c.(628-630)GGA>GAA	p.G210E	ARHGAP33_uc002obs.1_Missense_Mutation_p.G210E|ARHGAP33_uc002obt.1_Missense_Mutation_p.G74E|ARHGAP33_uc010eel.2_5'Flank|ARHGAP33_uc002obv.1_5'Flank	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	210	SH3.				cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						TCCCAGGTGGGAGACATTGTC	0.642													7	19					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36333307	36333307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36333307C>T	uc002oby.2	-	18	2480	c.2480G>A	c.(2479-2481)CGA>CAA	p.R827Q	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	827	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GAGCAGCCGTCGTGCTGGAGG	0.592													40	61					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36333363	36333363	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36333363C>T	uc002oby.2	-	18	2424	c.2424G>A	c.(2422-2424)CTG>CTA	p.L808L		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	808	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGCCTGGGCCAGTTTGGCAT	0.592													21	112					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36362577	36362577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36362577C>T	uc002oce.2	+	5	739	c.601C>T	c.(601-603)CGG>TGG	p.R201W	APLP1_uc010xsz.1_Missense_Mutation_p.R162W|APLP1_uc002ocf.2_Missense_Mutation_p.R201W|APLP1_uc002ocg.2_Missense_Mutation_p.R104W|APLP1_uc010xta.1_Missense_Mutation_p.R195W	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	201	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGCTCGGATCGGTTCCGTGG	0.642													15	63					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36370325	36370325	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36370325C>T	uc002oce.2	+	17	2073	c.1935C>T	c.(1933-1935)TTC>TTT	p.F645F	APLP1_uc010xsz.1_Silent_p.F606F|APLP1_uc002ocf.2_Silent_p.F646F|APLP1_uc002ocg.2_Silent_p.F549F|APLP1_uc010xta.1_Silent_p.F639F	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	645	Cytoplasmic (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTTACCGCTTCCTGGAGGAAC	0.667													41	62					0	0	1	0	0
C19orf46	163183	broad.mit.edu	37	19	36494527	36494527	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36494527T>C	uc002ocq.1	-	7	1108	c.1019A>G	c.(1018-1020)GAG>GGG	p.E340G	C19orf46_uc002ocr.1_Silent_p.G280G|C19orf46_uc002ocs.1_Missense_Mutation_p.E227G|C19orf46_uc010een.1_Missense_Mutation_p.E255G	NM_001039876	NP_001034965	Q8N205	SYNE4_HUMAN	hypothetical protein LOC163183	340	Cytoplasmic (Potential).				establishment of epithelial cell apical/basal polarity	integral to nuclear outer membrane	actin binding			ovary(1)	1	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TGGATTCCCCTCCAGCCTCAC	0.522													7	19					0	0	1	0	0
WDR62	284403	broad.mit.edu	37	19	36558769	36558769	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:36558769C>T	uc002odc.2	+	7	830	c.739C>T	c.(739-741)CTG>TTG	p.L247L	WDR62_uc002odd.2_Silent_p.L247L|WDR62_uc002odb.2_Silent_p.L247L	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	247					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CTCGGGCATCCTGGGCGAGCT	0.627													14	74					0	0	1	0	0
ZNF382	84911	broad.mit.edu	37	19	37101563	37101563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:37101563G>A	uc002oek.2	+	4	264	c.151G>A	c.(151-153)GCT>ACT	p.A51T	ZNF382_uc010efa.2_Missense_Mutation_p.A2T|ZNF382_uc010efb.2_Missense_Mutation_p.A50T|ZNF382_uc002oel.2_Missense_Mutation_p.A51T	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	51	Mediates interaction with TRIM28 (By similarity).|KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GTTTCACATGGCTAAGCCTGA	0.373													10	51					0	0	1	0	0
ZNF382	84911	broad.mit.edu	37	19	37118348	37118348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:37118348G>A	uc002oek.2	+	5	1662	c.1549G>A	c.(1549-1551)GAG>AAG	p.E517K	ZNF382_uc010efa.2_Missense_Mutation_p.E468K|ZNF382_uc010efb.2_Missense_Mutation_p.E516K|ZNF382_uc002oel.2_Missense_Mutation_p.E516K	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	517	Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TCACACAGGCGAGAAACCATA	0.423													16	37					0	0	1	0	0
ZNF420	147923	broad.mit.edu	37	19	37618501	37618501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:37618501C>T	uc002ofl.2	+	5	823	c.608C>T	c.(607-609)GCC>GTC	p.A203V		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	203	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGTGGGAAGGCCTTTACTCAA	0.398													13	20					0	0	1	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677325	37677325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:37677325G>A	uc002ofq.2	-	5	1368	c.1114C>T	c.(1114-1116)CAT>TAT	p.H372Y	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.H186Y	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	372	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATTCTCTGATGAATAATCAAC	0.423													21	70					0	0	1	0	0
ZNF607	84775	broad.mit.edu	37	19	38189210	38189210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:38189210C>T	uc002ohc.1	-	5	2418	c.1822G>A	c.(1822-1824)GAG>AAG	p.E608K	ZNF607_uc002ohb.1_Missense_Mutation_p.E607K	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	608	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TGAATTCTCTCATGAATAATA	0.378													24	23					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38229711	38229711	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:38229711C>T	uc002ohe.2	-	4	1702	c.1680G>A	c.(1678-1680)GGG>GGA	p.G560G	ZNF573_uc010efs.2_Silent_p.G473G|ZNF573_uc002ohd.2_Silent_p.G558G|ZNF573_uc002ohf.2_Silent_p.G502G|ZNF573_uc002ohg.2_Silent_p.G472G	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	540	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TAAAGGTCTTCCCACATTCCT	0.338													9	41					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572456	38572456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:38572456C>T	uc002ohk.2	+	3	760	c.251C>T	c.(250-252)GCC>GTC	p.A84V		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	84					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCAAGGGTGGCCGACTGGCCG	0.572													6	24					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38572698	38572698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:38572698C>T	uc002ohk.2	+	3	1002	c.493C>T	c.(493-495)CCC>TCC	p.P165S		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	165					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGCCTTCCTCCCCCTTCGGCA	0.711													31	36					0	0	1	0	0
SPINT2	10653	broad.mit.edu	37	19	38779813	38779813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:38779813G>A	uc002ohr.1	+	4	704	c.373G>A	c.(373-375)GAT>AAT	p.D125N	SPINT2_uc002ohs.1_Missense_Mutation_p.D68N	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	125	Extracellular (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCACTCCAGCGATATGTTCAA	0.338													17	71					0	0	1	0	0
MAP4K1	11184	broad.mit.edu	37	19	39096236	39096236	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39096236G>A	uc002oix.1	-	18	1443	c.1335C>T	c.(1333-1335)ACC>ACT	p.T445T	MAP4K1_uc002oiw.1_Silent_p.T32T|MAP4K1_uc002oiy.1_Silent_p.T445T|MAP4K1_uc010xug.1_Silent_p.T107T	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	445					activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GGGGGCTGCTGGTGGATGGGG	0.677													3	3					0	0	1	0	0
LGALS4	3960	broad.mit.edu	37	19	39299478	39299478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39299478C>T	uc002ojg.2	-	3	459	c.245G>A	c.(244-246)GGG>GAG	p.G82E	LGALS4_uc010xuj.1_Missense_Mutation_p.G82E	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	82	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			GCCCCACTTCCCGCCCTGCAA	0.582													21	51					0	0	1	0	0
LGALS4	3960	broad.mit.edu	37	19	39303084	39303084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39303084C>T	uc002ojg.2	-	2	335	c.121G>A	c.(121-123)GAG>AAG	p.E41K	LGALS4_uc010xuj.1_Missense_Mutation_p.E41K	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	41	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TTCATGTGCTCGCTGGCCACT	0.627													11	59					0	0	1	0	0
SYCN	342898	broad.mit.edu	37	19	39694680	39694680	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39694680T>C	uc002okr.2	-	1	227	c.215A>G	c.(214-216)AAC>AGC	p.N72S		NM_001080468	NP_001073937	Q0VAF6	SYCN_HUMAN	syncollin precursor	72					exocytosis	transport vesicle membrane					0	all_cancers(60;7.32e-07)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|all_epithelial(25;8.97e-07)|Ovarian(47;0.0454)		Epithelial(26;1.34e-25)|all cancers(26;9.31e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GTTGGCCCAGTTGGAGGGCAG	0.662													6	23					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39804945	39804945	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39804945G>A	uc002okw.2	-	1	1032	c.1032C>T	c.(1030-1032)TCC>TCT	p.S344S		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	344	Ig-like.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGGTCCGGCTGGAGTTCCCCA	0.687													8	9					0	0	1	0	0
TIMM50	92609	broad.mit.edu	37	19	39976380	39976380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:39976380C>T	uc002olu.1	+	6	867	c.734C>T	c.(733-735)CCG>CTG	p.P245L	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_5'UTR	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	142	Mitochondrial intermembrane (Potential).				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CTGCAGGAACCGTACTACCAG	0.577													17	53					0	0	1	0	0
DYRK1B	9149	broad.mit.edu	37	19	40320539	40320539	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40320539C>T	uc002omj.2	-	5	781	c.501G>A	c.(499-501)ACG>ACA	p.T167T	DYRK1B_uc002omi.2_Silent_p.T167T|DYRK1B_uc002omk.2_Silent_p.T167T	NM_004714	NP_004705	Q9Y463	DYR1B_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	167	Protein kinase.				positive regulation of transcription, DNA-dependent	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|transcription coactivator activity			ovary(4)|stomach(1)|central_nervous_system(1)|skin(1)	7	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)		Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)			ACTTCATCTCCGTGTCATGCT	0.577													7	16					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40368368	40368368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40368368G>A	uc002omp.3	-	28	12988	c.12980C>T	c.(12979-12981)TCC>TTC	p.S4327F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4327						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCCACGTAGGAAGCCAGAGC	0.632													42	219					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40397974	40397974	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40397974G>A	uc002omp.3	-	14	7001	c.6993C>T	c.(6991-6993)GAC>GAT	p.D2331D		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2331						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACGACAGAAGTCCGGCCGCC	0.642													16	67					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40420140	40420140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40420140G>A	uc002omp.3	-	6	2862	c.2854C>T	c.(2854-2856)CCC>TCC	p.P952S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	952	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCTTGGAAGGGCAGATACTGA	0.527													29	22					0	0	1	0	0
PLD3	23646	broad.mit.edu	37	19	40877667	40877667	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40877667C>T	uc002onm.3	+	9	1164	c.766C>T	c.(766-768)CAG>TAG	p.Q256*	PLD3_uc002onj.3_Nonsense_Mutation_p.Q256*|PLD3_uc002onk.3_Nonsense_Mutation_p.Q256*|PLD3_uc002onl.3_Nonsense_Mutation_p.Q256*|PLD3_uc002onn.2_Nonsense_Mutation_p.Q256*	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	256	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			GTTCCTGGGCCAGGCAGGCAG	0.577													22	31					0	0	1	0	0
PRX	57716	broad.mit.edu	37	19	40901605	40901605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40901605G>A	uc002onr.2	-	7	2923	c.2654C>T	c.(2653-2655)CCT>CTT	p.P885L	PRX_uc002onq.2_Missense_Mutation_p.P746L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	885					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGCCACCTCAGGGCCCTCCAC	0.637													18	51					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41062138	41062138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41062138G>A	uc002ony.2	+	25	5319	c.5233G>A	c.(5233-5235)GAG>AAG	p.E1745K	SPTBN4_uc002onx.2_Missense_Mutation_p.E1745K|SPTBN4_uc002onz.2_Missense_Mutation_p.E1745K|SPTBN4_uc010egx.2_Missense_Mutation_p.E488K|SPTBN4_uc002ooa.2_Missense_Mutation_p.E421K	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1745	Spectrin 15.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGGATTGCCGAGAAGGAGGT	0.577													34	31					0	0	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41111009	41111009	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41111009G>T	uc002ooh.1	+	5	520	c.520G>T	c.(520-522)GAC>TAC	p.D174Y	LTBP4_uc002oog.1_Missense_Mutation_p.D137Y|LTBP4_uc002ooi.1_Missense_Mutation_p.D107Y	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	174	EGF-like 1.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTGTCCCCCGGACTTCGCTGG	0.542													5	31					3.59834e-05	3.60776e-05	1	1	0
ITPKC	80271	broad.mit.edu	37	19	41243613	41243613	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41243613T>A	uc002oot.2	+	6	1820	c.1787T>A	c.(1786-1788)GTG>GAG	p.V596E		NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	596						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CAAAAGTACGTGGCATGCCTA	0.562													45	59					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41430260	41430260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41430260G>A	uc010ehg.1	+	1	91	c.83G>A	c.(82-84)GGC>GAC	p.G28D	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G28D|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						AACTCCCATGGCACCCTCCCA	0.582													24	66					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41522597	41522597	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41522597C>T	uc002opr.1	+	9	1348	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Silent_p.F247F	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	447					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CGGAATTGTTCCTCTTCTTCA	0.572													12	31					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41597763	41597763	+	Missense_Mutation	SNP	C	T	T	rs149101733	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41597763C>T	uc002opt.2	+	5	790	c.781C>T	c.(781-783)CCC>TCC	p.P261S		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	261					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CACGCTGGATCCCAATTCCCC	0.582													29	49					0	0	1	0	0
CYP2S1	29785	broad.mit.edu	37	19	41704620	41704620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41704620G>A	uc002opw.2	+	5	716	c.661G>A	c.(661-663)GAG>AAG	p.E221K	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	221					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						ACAGACCTACGAGATGTTCTC	0.627													23	104					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41727125	41727125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41727125C>T	uc010ehj.2	+	3	573	c.383C>T	c.(382-384)TCC>TTC	p.S128F	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.S128F|AXL_uc010ehk.2_Missense_Mutation_p.S128F	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	128	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						ACCTTCGTGTCCCAGCCTGGC	0.577													13	47					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41754451	41754451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:41754451G>A	uc010ehj.2	+	13	1760	c.1570G>A	c.(1570-1572)GAG>AAG	p.E524K	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.E515K	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	524	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						AGAGCTGAAGGAGAAGCTGCG	0.493													10	54					0	0	1	0	0
CEACAM7	1087	broad.mit.edu	37	19	42190984	42190984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42190984C>T	uc002ori.1	-	2	235	c.233G>A	c.(232-234)CGA>CAA	p.R78Q	CEACAM7_uc010ehx.2_Missense_Mutation_p.R78Q|CEACAM7_uc010ehy.1_Missense_Mutation_p.R78Q	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	78	Ig-like V-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TCCTATAATTCGATAGTTGGC	0.463													45	156					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42219036	42219036	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42219036C>T	uc002ork.2	+	3	692	c.571C>T	c.(571-573)CTG>TTG	p.L191L	CEACAM5_uc010ehz.1_Silent_p.L191L|CEACAM5_uc002orj.1_Silent_p.L191L|CEACAM5_uc002orl.2_Silent_p.L191L	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	191	Ig-like 2.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CAGTCCCAGGCTGCAGCTGTC	0.532													65	99					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42223919	42223919	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42223919C>T	uc002ork.2	+	7	1684	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F	CEACAM5_uc002orj.1_Silent_p.F520F|CEACAM5_uc002orl.2_Silent_p.F521F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	521	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CTGTGGCCTTCACCTGTGAAC	0.562													36	116					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42492157	42492157	+	Silent	SNP	G	A	A	rs142806181	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42492157G>A	uc002osg.2	-	4	442	c.288C>T	c.(286-288)ATC>ATT	p.I96I	ATP1A3_uc010xwf.1_Silent_p.I107I|ATP1A3_uc010xwg.1_Silent_p.I66I|ATP1A3_uc010xwh.1_Silent_p.I109I|ATP1A3_uc002osh.2_Silent_p.I96I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	96	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GGATAGCCCCGATCCACAGCA	0.652													29	91					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42558547	42558547	+	Silent	SNP	G	A	A	rs150196835	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42558547G>A	uc002osj.1	-	8	1016	c.981C>T	c.(979-981)ATC>ATT	p.I327I	GRIK5_uc010eib.1_Silent_p.I246I	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	327	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GCTTCACACCGATCTCCTGGC	0.652													25	37					0	0	1	0	0
ZNF574	64763	broad.mit.edu	37	19	42585084	42585084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42585084C>T	uc002osm.3	+	2	2495	c.2326C>T	c.(2326-2328)CGT>TGT	p.R776C	ZNF574_uc002osk.3_Missense_Mutation_p.R866C	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	776	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				CAAAGCGTTCCGTCAGAGTAC	0.602													34	134					0	0	1	0	0
POU2F2	5452	broad.mit.edu	37	19	42621504	42621504	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42621504G>A	uc002osp.2	-	5	268	c.201C>T	c.(199-201)GAC>GAT	p.D67D	POU2F2_uc002osn.2_Silent_p.D67D|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Silent_p.D67D|POU2F2_uc002osr.1_Silent_p.D67D	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	67					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				CGCCACTGGGGTCTTCAGCCT	0.642													34	42					0	0	1	0	0
DEDD2	162989	broad.mit.edu	37	19	42713875	42713875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42713875G>A	uc002osu.1	-	4	634	c.566C>T	c.(565-567)TCC>TTC	p.S189F	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Missense_Mutation_p.S184F|DEDD2_uc002osx.1_Missense_Mutation_p.P73S|DEDD2_uc002osy.1_Missense_Mutation_p.S189F|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	189					activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				GCCTTCAGAGGAAGGTCTGGC	0.647													31	61					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42795507	42795507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42795507C>T	uc002otf.1	+	10	2627	c.2587C>T	c.(2587-2589)CGT>TGT	p.R863C		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	863	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CACCAGCATCCGTTTCACCCT	0.692			T	DUX4	soft tissue sarcoma								27	12					0	0	1	0	0
PRR19	284338	broad.mit.edu	37	19	42813869	42813869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42813869C>T	uc002oti.2	+	2	511	c.133C>T	c.(133-135)CCT>TCT	p.P45S	PRR19_uc002oth.1_Missense_Mutation_p.P45S|PRR19_uc002otj.2_Missense_Mutation_p.P45S	NM_199285	NP_954979	A6NJB7	PRR19_HUMAN	proline rich 19	45											0		Prostate(69;0.00682)				CCACCACGATCCTCCTGTGGC	0.637													32	67					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42840346	42840346	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42840346C>T	uc002otl.3	+	6	1727	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	MEGF8_uc002otm.3_5'Flank	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	364	Extracellular (Potential).|Kelch 3.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CTGGCCTCTTCCGTTTCCGCC	0.657													12	35					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42875633	42875633	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42875633A>G	uc002otl.3	+	40	7702	c.7067A>G	c.(7066-7068)CAG>CGG	p.Q2356R	MEGF8_uc002otm.3_Missense_Mutation_p.Q1964R|MEGF8_uc002otn.3_Intron	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2423	Extracellular (Potential).|Laminin EGF-like 4.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TACAAGTACCAGGTGCGGCTG	0.617													26	36					0	0	1	0	0
LIPE	3991	broad.mit.edu	37	19	42930511	42930511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:42930511C>T	uc002otr.2	-	1	1068	c.791G>A	c.(790-792)GGA>GAA	p.G264E	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	264					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				ACCAGATTTTCCTTTGAAGCC	0.488													35	67					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43243098	43243098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43243098C>T	uc002oue.2	-	2	340	c.208G>A	c.(208-210)GGG>AGG	p.G70R	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.G92R	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	70	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTCATTTGCCCTTTGTACCAG	0.433													60	211					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43262257	43262257	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43262257G>A	uc002ouo.2	-	3	704	c.606C>T	c.(604-606)CTC>CTT	p.L202L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Silent_p.L41L|PSG8_uc002ouh.2_Silent_p.L202L|PSG8_uc010ein.2_Silent_p.L80L|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Silent_p.L41L|PSG8_uc002oul.3_Silent_p.L202L|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	202	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				CCAATAGAAAGAGGGTCCTGT	0.522													76	294					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43348714	43348714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43348714C>T	uc002oux.1	-	5	1231	c.1082G>A	c.(1081-1083)GGA>GAA	p.G361E	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Intron|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_RNA|PSG8_uc002oup.3_Intron|PSG10_uc010eip.2_RNA|PSG1_uc002our.1_Intron|PSG1_uc010eio.1_Intron|PSG1_uc002ouy.1_Missense_Mutation_p.G339E	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	347	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				AAGGTTTTGTCCTGAACGGTA	0.463													86	102					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411173	43411173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43411173G>A	uc002ovj.1	-	5	1193	c.1141C>T	c.(1141-1143)CCC>TCC	p.P381S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.P388S|PSG6_uc002ovi.2_Missense_Mutation_p.P382S|PSG6_uc010xwk.1_Missense_Mutation_p.P221S|PSG11_uc002ovk.1_Missense_Mutation_p.P380S|PSG6_uc002ove.1_Missense_Mutation_p.P171S|PSG6_uc002ovf.1_Missense_Mutation_p.P288S|PSG6_uc002ovg.1_Missense_Mutation_p.P381S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	381	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GTAATTTGGGGGATAAAGAGC	0.453													58	232					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411772	43411772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43411772C>T	uc002ovj.1	-	4	993	c.941G>A	c.(940-942)CGA>CAA	p.R314Q	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.R321Q|PSG6_uc002ovi.2_Missense_Mutation_p.R315Q|PSG6_uc010xwk.1_Missense_Mutation_p.R154Q|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.R104Q|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.R314Q	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	314	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GCCACCATATCGGTCCCGTAT	0.498													37	132					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43414950	43414950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43414950G>A	uc002ovj.1	-	3	540	c.488C>T	c.(487-489)GCT>GTT	p.A163V	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.A170V|PSG6_uc002ovi.2_Missense_Mutation_p.A164V|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.A163V|PSG6_uc002ovg.1_Missense_Mutation_p.A163V	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	163	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TAAGCGCACAGCCTCCATGAC	0.542													49	181					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43420371	43420371	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43420371G>A	uc002ovj.1	-	2	385	c.333C>T	c.(331-333)GTC>GTT	p.V111V	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Silent_p.V111V|PSG6_uc002ovg.1_Silent_p.V111V	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	111	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CCTCCTGTGTGACATTCTGGA	0.443													166	202					0	0	1	0	0
PSG11	5680	broad.mit.edu	37	19	43519497	43519497	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43519497G>A	uc002ovm.1	-	4	842	c.735C>T	c.(733-735)TTC>TTT	p.F245F	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Silent_p.F251F|PSG11_uc002ovo.1_Silent_p.F123F|PSG11_uc002ovp.1_Silent_p.F123F	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	245	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TGACTGAAGGGAAAATTCTGG	0.473													19	103					0	0	1	0	0
PSG11	5680	broad.mit.edu	37	19	43522979	43522979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43522979C>T	uc002ovm.1	-	3	759	c.652G>A	c.(652-654)GAA>AAA	p.E218K	PSG11_uc002ouw.2_Missense_Mutation_p.E224K|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.E224K|PSG11_uc002ovn.1_Missense_Mutation_p.E224K|PSG11_uc002ovo.1_Missense_Mutation_p.E96K|PSG11_uc002ovp.1_Missense_Mutation_p.E96K	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	218	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TTCCATATTTCACATTCATAG	0.507													169	197					0	0	1	0	0
PSG5	5673	broad.mit.edu	37	19	43679421	43679421	+	Missense_Mutation	SNP	G	A	A	rs150587441	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43679421G>A	uc002ovu.2	-	4	1041	c.910C>T	c.(910-912)CGT>TGT	p.R304C	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.R179C|PSG5_uc002ovx.2_Missense_Mutation_p.R304C|PSG5_uc002ovv.2_Missense_Mutation_p.R397C|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	304	Ig-like C2-type 2.				female pregnancy	extracellular region		p.R304C(1)		skin(3)	3		Prostate(69;0.00899)				GCTGAGTTACGAACAGAGCAA	0.443													44	198					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43699294	43699294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43699294G>A	uc002ovy.2	-	4	943	c.841C>T	c.(841-843)CCT>TCT	p.P281S	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.P188S|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	281	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GGACTGACAGGGAGGCTCTGA	0.443													64	285					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43763273	43763273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43763273G>A	uc002owd.3	-	4	823	c.724C>T	c.(724-726)CCC>TCC	p.P242S	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.P149S|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	242	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GTGATGTAGGGGATGGGCAGC	0.478													57	203					0	0	1	0	0
TEX101	83639	broad.mit.edu	37	19	43920619	43920619	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:43920619C>T	uc010xwo.1	+	4	498	c.303C>T	c.(301-303)ATC>ATT	p.I101I	TEX101_uc002owk.2_Silent_p.I119I	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	101						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				CCGGCCTGATCGTGACCTCCT	0.527													103	134					0	0	1	0	0
IRGC	56269	broad.mit.edu	37	19	44223413	44223413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44223413G>A	uc002oxh.2	+	2	850	c.703G>A	c.(703-705)GAC>AAC	p.D235N		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	235						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CTGGGAGCACGACCTGCCCTC	0.667													12	16					0	0	1	0	0
ZNF223	7766	broad.mit.edu	37	19	44570477	44570477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44570477C>T	uc002oyf.1	+	5	749	c.496C>T	c.(496-498)CCT>TCT	p.P166S	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				CTTTGATCTTCCTCAGCAAAT	0.433													28	114					0	0	1	0	0
ZNF224	7767	broad.mit.edu	37	19	44611664	44611664	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44611664A>T	uc002oyh.1	+	6	1653	c.1351A>T	c.(1351-1353)ACA>TCA	p.T451S	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	451					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				GCGCGTCCATACAGGAGAGAA	0.458													21	27					0	0	1	0	0
ZNF235	9310	broad.mit.edu	37	19	44793189	44793189	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44793189G>A	uc002oza.3	-	5	502	c.399C>T	c.(397-399)TTC>TTT	p.F133F	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Silent_p.F129F|ZNF235_uc010xwx.1_Silent_p.F47F	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				GGTGCTTGGGGAACTGAGAGC	0.453													54	85					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891395	44891395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44891395G>A	uc002ozd.3	-	4	1099	c.1012C>T	c.(1012-1014)CAC>TAC	p.H338Y	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.H345Y	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	338	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TCCCCTGTGTGGACTCGATGA	0.473													11	80					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891418	44891418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44891418G>A	uc002ozd.3	-	4	1076	c.989C>T	c.(988-990)TCC>TTC	p.S330F	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.S337F	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	330	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GTTGTGAAGGGAAGAGCTGCG	0.473													21	71					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891924	44891924	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44891924G>A	uc002ozd.3	-	4	570	c.483C>T	c.(481-483)AAC>AAT	p.N161N	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.N168N	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TTCCCTGAGAGTTCTGGGGCT	0.448													24	69					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44932551	44932551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:44932551C>T	uc002oze.1	-	6	2839	c.2405G>A	c.(2404-2406)GGG>GAG	p.G802E	ZNF229_uc010ejk.1_Missense_Mutation_p.G456E|ZNF229_uc010ejl.1_Missense_Mutation_p.G796E	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	802	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GAAGCCTTTCCCACACACACC	0.493													16	48					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45015214	45015214	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45015214C>T	uc010ejn.1	-	12	1628	c.1612_splice	c.e12-1	p.T538_splice	CEACAM20_uc010ejo.1_Splice_Site_p.T526_splice|CEACAM20_uc010ejp.1_Splice_Site_p.T445_splice|CEACAM20_uc010ejq.1_Splice_Site_p.T433_splice	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion							integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GCAGCTTCGTCTGCAAGTAAG	0.488													81	232					0	0	1	0	0
BCL3	602	broad.mit.edu	37	19	45260400	45260400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45260400C>T	uc010xxe.1	+	4	716	c.646C>T	c.(646-648)CGC>TGC	p.R216C		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	216	ANK 3.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				GTGCGAGCACCGCAGCCCGAC	0.682			T	IGH@	CLL 								22	41					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45281486	45281486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45281486C>T	uc002ozs.2	+	1	361	c.298C>T	c.(298-300)CCC>TCC	p.P100S	CBLC_uc010ejt.2_Missense_Mutation_p.P100S	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	100	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				GCTGCTGCCTCCCCGGGGCCG	0.527			M		AML								46	125					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45281499	45281499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45281499G>A	uc002ozs.2	+	1	374	c.311G>A	c.(310-312)AGG>AAG	p.R104K	CBLC_uc010ejt.2_Missense_Mutation_p.R104K	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	104	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CGGGGCCGAAGGAGTGCCAAC	0.527			M		AML								66	92					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45284184	45284184	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45284184A>C	uc002ozs.2	+	2	439	c.376A>C	c.(376-378)ATC>CTC	p.I126L	CBLC_uc010ejt.2_Missense_Mutation_p.I126L	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	126	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CAAGCTGGCCATCATCTTCAG	0.617			M		AML								114	110					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45297532	45297532	+	Silent	SNP	G	A	A	rs148527231		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45297532G>A	uc002ozs.2	+	9	1419	c.1356G>A	c.(1354-1356)CCG>CCA	p.P452P	CBLC_uc010ejt.2_Silent_p.P406P	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	452					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.P452P(1)		ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				ATGCCCAGCCGAAAGTGGTGA	0.662			M		AML								132	114					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45315495	45315495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45315495G>A	uc002ozu.2	+	3	324	c.280G>A	c.(280-282)GAC>AAC	p.D94N	BCAM_uc002ozt.1_Missense_Mutation_p.D94N	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	94	Extracellular (Potential).|Ig-like V-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				CACAATGCACGACACCCGGGG	0.706													76	118					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45316778	45316778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45316778G>A	uc002ozu.2	+	6	729	c.685G>A	c.(685-687)GAT>AAT	p.D229N	BCAM_uc002ozt.1_Missense_Mutation_p.D229N	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	229	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GCTCCGCAAGGATGACCGAGA	0.706													33	133					0	0	1	0	0
APOC1	341	broad.mit.edu	37	19	45422464	45422464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45422464G>A	uc002pac.1	+	5	481	c.229G>A	c.(229-231)GAG>AAG	p.E77K	APOC1_uc002pad.1_Missense_Mutation_p.E77K|APOC1_uc002pae.1_Missense_Mutation_p.E77K|APOC1_uc002paf.1_RNA	NM_001645	NP_001636	P02654	APOC1_HUMAN	apolipoprotein C-I precursor	77					cholesterol efflux|chylomicron remnant clearance|high-density lipoprotein particle remodeling|lipoprotein metabolic process|negative regulation of cholesterol transport|negative regulation of fatty acid biosynthetic process|negative regulation of lipoprotein lipase activity|negative regulation of phosphatidylcholine catabolic process|negative regulation of receptor-mediated endocytosis|negative regulation of very-low-density lipoprotein particle clearance|phospholipid efflux|positive regulation of cholesterol esterification|very-low-density lipoprotein particle assembly|very-low-density lipoprotein particle clearance	chylomicron|endoplasmic reticulum|high-density lipoprotein particle|very-low-density lipoprotein particle	fatty acid binding|phosphatidylcholine binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipase inhibitor activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|Epithelial(262;0.174)		GAAAGTGAAGGAGAAACTCAA	0.542													164	220					0	0	1	0	0
APOC4	346	broad.mit.edu	37	19	45445539	45445539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45445539C>T	uc002pag.1	+	1	45	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	2					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		CCAGAAATGTCCCTCCTCAGA	0.677													72	87					0	0	1	0	0
CLPTM1	1209	broad.mit.edu	37	19	45476449	45476449	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45476449C>G	uc002pai.2	+	3	306	c.291C>G	c.(289-291)TTC>TTG	p.F97L	CLPTM1_uc010ejv.1_5'UTR|CLPTM1_uc010xxf.1_5'UTR|CLPTM1_uc010xxg.1_Missense_Mutation_p.F83L	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	97	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		GCAACCTGTTCCCCAAAGACA	0.637													85	118					0	0	1	0	0
ERCC2	2068	broad.mit.edu	37	19	45855556	45855556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45855556G>A	uc002pbj.2	-	22	2148	c.2101C>T	c.(2101-2103)CTC>TTC	p.L701F	ERCC2_uc002pbh.2_Missense_Mutation_p.L264F|ERCC2_uc002pbi.2_Missense_Mutation_p.L394F|ERCC2_uc010ejz.2_Missense_Mutation_p.L623F|ERCC2_uc002pbk.2_Missense_Mutation_p.L677F	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	701					cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		GCATCTGTGAGGTGCTCCTGG	0.657			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				32	44					0	0	1	0	0
ERCC2	2068	broad.mit.edu	37	19	45868162	45868162	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45868162G>A	uc002pbj.2	-	7	575	c.528C>T	c.(526-528)AAC>AAT	p.N176N	ERCC2_uc002pbi.2_5'Flank|ERCC2_uc010ejz.2_Intron|ERCC2_uc002pbk.2_Silent_p.N152N|ERCC2_uc002pbl.3_Silent_p.N152N|ERCC2_uc010xxj.1_Intron	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	176	Helicase ATP-binding.				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		GGTCATCCAGGTTGTAGATGC	0.652			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				19	26					0	0	1	0	0
RTN2	6253	broad.mit.edu	37	19	45997425	45997425	+	Silent	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:45997425T>A	uc002pcb.2	-	4	1041	c.813A>T	c.(811-813)CTA>CTT	p.L271L	RTN2_uc002pcc.2_Silent_p.L271L|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	271						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GTTGCTTACCTAGAAGGCGTG	0.507													74	87					0	0	1	0	0
MYPOP	339344	broad.mit.edu	37	19	46393919	46393919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46393919G>A	uc002pdt.2	-	3	1249	c.1162C>T	c.(1162-1164)CCT>TCT	p.P388S		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	388						nucleus	DNA binding				0						TTCCGTGTAGGGAAACCTTTT	0.642													7	45					0	0	1	0	0
CCDC61	729440	broad.mit.edu	37	19	46498700	46498700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46498700C>T	uc002pdw.2	+	2	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		AACGCCGGATCCTGGGGCGGG	0.622													10	7					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46823779	46823780	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46823779_46823780CC>TT	uc002peh.2	+	9	1134_1135	c.1105_1106CC>TT	c.(1105-1107)CCC>TTC	p.P369F	HIF3A_uc002peg.3_Missense_Mutation_p.P369F|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.P313F|HIF3A_uc002pej.1_Missense_Mutation_p.P300F|HIF3A_uc002pek.2_Missense_Mutation_p.P313F|HIF3A_uc010xxy.1_Missense_Mutation_p.P300F|HIF3A_uc002pel.2_Missense_Mutation_p.P367F|HIF3A_uc010xxz.1_Missense_Mutation_p.P318F	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	369					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GCGGGGCGCCCCCTCTCAGAAG	0.649													37	56					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46832687	46832687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46832687C>T	uc002peh.2	+	12	1693	c.1664C>T	c.(1663-1665)TCC>TTC	p.S555F	HIF3A_uc002peg.3_Missense_Mutation_p.S555F|HIF3A_uc002pei.3_Missense_Mutation_p.S499F|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.S499F|HIF3A_uc010xxy.1_Missense_Mutation_p.S486F|HIF3A_uc002pel.2_Missense_Mutation_p.S553F|HIF3A_uc010xxz.1_Missense_Mutation_p.S504F	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	555	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		TCCAGCCCTTCCAGAGGGGAC	0.632													3	15					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46842856	46842856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46842856G>A	uc002peh.2	+	15	2016	c.1987G>A	c.(1987-1989)GCA>ACA	p.A663T	HIF3A_uc002pek.2_Missense_Mutation_p.A607T|HIF3A_uc010xxy.1_Missense_Mutation_p.A594T|HIF3A_uc002pel.2_Missense_Mutation_p.A661T	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	663					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCAGCCAAGGGCAGGCTCAGC	0.622													20	48					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997306	46997306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:46997306C>T	uc002pes.2	-	1	1864	c.1417G>A	c.(1417-1419)GAA>AAA	p.E473K	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	473										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		TTCCCGCCTTCCCAGGCGTTT	0.627													21	88					0	0	1	0	0
SLC1A5	6510	broad.mit.edu	37	19	47280488	47280488	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:47280488G>A	uc002pfs.2	-	6	1853	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	SLC1A5_uc010xyh.1_Silent_p.F209F|SLC1A5_uc002pfq.2_Silent_p.F235F|SLC1A5_uc002pfr.2_Silent_p.F183F	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	411	Helical; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	TGATCTTTACGAAGTCCAAGG	0.612													7	28					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47503917	47503917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:47503917C>T	uc010ekv.2	+	6	4472	c.4472C>T	c.(4471-4473)TCC>TTC	p.S1491F		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	1491	Pro-rich.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CTGCTTCCCTCCCAGCTTCAA	0.627													4	5					0	0	1	0	0
NPAS1	4861	broad.mit.edu	37	19	47548453	47548453	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:47548453G>A	uc002pfw.2	+	12	1513	c.1317G>A	c.(1315-1317)CCG>CCA	p.P439P	NPAS1_uc002pfx.2_Silent_p.P264P|NPAS1_uc002pfy.2_Silent_p.P439P|NPAS1_uc010xyj.1_3'UTR	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	439					central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		TTCCAGAGCCGGAGCCTCCGA	0.632													7	13					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823975	47823975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:47823975C>T	uc002pgj.1	+	2	990	c.941C>T	c.(940-942)TCC>TTC	p.S314F		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	314	Cytoplasmic (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CTGCGGAAATCCCTCCCCAGC	0.592													25	79					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47935701	47935701	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:47935701C>T	uc002pgx.2	-	9	2390	c.2112G>A	c.(2110-2112)GGG>GGA	p.G704G	SLC8A2_uc010xyq.1_Silent_p.G460G|SLC8A2_uc010xyr.1_Silent_p.G167G|SLC8A2_uc010ele.2_Silent_p.G704G	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	704	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CCTCCTCGTCCCCTGTGGGCA	0.587													36	55					0	0	1	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48198219	48198219	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:48198219C>T	uc002phh.3	+	9	3152	c.2958C>T	c.(2956-2958)TCC>TCT	p.S986S	GLTSCR1_uc002phi.3_Silent_p.S744S	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	986							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		CGCAGACCTCCACCAGCCTGG	0.721													10	4					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49055573	49055573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49055573G>A	uc002pjl.2	+	1	145	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	22				E->A: Increases the cholesterol sulfotransferase activity.|Missing: Loss of the cholesterol sulfotransferase activity.	3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		TGACATCTCGGAAATCAGGTG	0.672													4	23					0	0	1	0	0
RASIP1	54922	broad.mit.edu	37	19	49230093	49230093	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49230093C>T	uc002pki.2	-	8	2273	c.2076G>A	c.(2074-2076)CTG>CTA	p.L692L	RASIP1_uc002pkh.2_5'Flank	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	692	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		TGACCTCATCCAGGAGGGCCA	0.517													18	78					0	0	1	0	0
RASIP1	54922	broad.mit.edu	37	19	49230406	49230406	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49230406C>T	uc002pki.2	-	7	2078	c.1881G>A	c.(1879-1881)GAG>GAA	p.E627E	RASIP1_uc002pkh.2_5'Flank	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	627	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		CGGGGACCCCCTCAGGGTGGC	0.517													25	23					0	0	1	0	0
HRC	3270	broad.mit.edu	37	19	49655269	49655269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49655269C>T	uc002pmv.2	-	4	2205	c.2018G>A	c.(2017-2019)TGC>TAC	p.C673Y		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	673	Metal-binding (Potential).				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		ACCTGGAGCGCAGACCGTTTC	0.692													15	28					0	0	1	0	0
HRC	3270	broad.mit.edu	37	19	49658204	49658204	+	Silent	SNP	C	T	T	rs74666147	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49658204C>T	uc002pmv.2	-	1	478	c.291G>A	c.(289-291)AAG>AAA	p.K97K	TRPM4_uc002pmw.2_5'Flank|TRPM4_uc010emu.2_5'Flank|TRPM4_uc010yak.1_5'Flank|TRPM4_uc002pmx.2_5'Flank|TRPM4_uc010emv.2_5'Flank|TRPM4_uc010yal.1_5'Flank	NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	97					muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		GCCCATATTCCTTGGAGACAT	0.532													51	59					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49714469	49714469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49714469C>T	uc002pmw.2	+	24	3655	c.3583C>T	c.(3583-3585)CGC>TGC	p.R1195C	TRPM4_uc010emu.2_Missense_Mutation_p.R1050C|TRPM4_uc010yak.1_Missense_Mutation_p.R659C|TRPM4_uc002pmx.2_Missense_Mutation_p.R1021C|TRPM4_uc010emv.2_Missense_Mutation_p.R1080C|TRPM4_uc010yal.1_Missense_Mutation_p.R841C|TRPM4_uc002pmy.2_Missense_Mutation_p.R537C	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	1195	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGCCCTGAGCCGCTCTGCCTT	0.667													4	10					0	0	1	0	0
TEAD2	8463	broad.mit.edu	37	19	49846637	49846637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49846637G>A	uc002pnj.2	-	10	1019	c.928C>T	c.(928-930)CCA>TCA	p.P310S	TEAD2_uc002png.2_Missense_Mutation_p.P313S|TEAD2_uc002pnh.2_Missense_Mutation_p.P314S|TEAD2_uc002pni.2_Missense_Mutation_p.P313S|TEAD2_uc010yao.1_Missense_Mutation_p.P182S|TEAD2_uc010emw.2_Missense_Mutation_p.P313S	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	310	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		TCACCACTTGGGCCCCAGTTC	0.532													18	79					0	0	1	0	0
TEAD2	8463	broad.mit.edu	37	19	49863116	49863116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:49863116C>T	uc002pnj.2	-	2	308	c.217G>A	c.(217-219)GAA>AAA	p.E73K	TEAD2_uc002png.2_Missense_Mutation_p.E73K|TEAD2_uc002pnh.2_Missense_Mutation_p.E73K|TEAD2_uc002pni.2_Missense_Mutation_p.E73K|TEAD2_uc010yao.1_Intron|TEAD2_uc010emw.2_Missense_Mutation_p.E73K	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	73	TEA.				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		ATCTTGCCTTCATCAGACAAA	0.488													42	51					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50156268	50156268	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50156268C>T	uc002poq.2	+	7	2746	c.2622C>T	c.(2620-2622)TCC>TCT	p.S874S		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	874					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		AGAGTCGCTCCCCCTTCCTCA	0.657													23	16					0	0	1	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169131	50169131	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50169131C>T	uc002ppa.2	+	1	733	c.51C>T	c.(49-51)TTC>TTT	p.F17F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F17F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	17					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTTGGGTTTCCGGCCAGAGG	0.572													42	52					0	0	1	0	0
AP2A1	160	broad.mit.edu	37	19	50309455	50309455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50309455C>T	uc002ppn.2	+	23	3012	c.2801C>T	c.(2800-2802)ACT>ATT	p.T934I	AP2A1_uc002ppo.2_Missense_Mutation_p.T912I|AP2A1_uc010enk.2_Missense_Mutation_p.T65I	NM_014203	NP_055018	O95782	AP2A1_HUMAN	adaptor-related protein complex 2, alpha 1	934				ENFVGAGIIQTKALQVGCLLRLEPNAQAQMYRLTLRTSKEP VSRHLCELLAQQF -> GDREDTRVWGMPGTFLRPFVFLFL FICCCLHSGGLGGVPLPPFPPQAQRGEGPGKWMSPPLPPHP VVAPPTPSPSRGCVLL (in Ref. 4; AAH14214).	axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|Golgi to endosome transport|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|clathrin coat of trans-Golgi network vesicle|cytosol	protein binding|protein transporter activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0023)|GBM - Glioblastoma multiforme(134;0.0157)		ATCATCCAGACTAAAGCCCTG	0.667													6	5					0	0	1	0	0
MED25	81857	broad.mit.edu	37	19	50339161	50339161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50339161G>A	uc002ppw.1	+	16	1977	c.1924G>A	c.(1924-1926)GCC>ACC	p.A642T	MED25_uc010ybe.1_Missense_Mutation_p.A429T|MED25_uc002ppx.1_Missense_Mutation_p.A423T	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	642	Interaction with RARA.|Interaction with RARA.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		GAACCCTGGGGCCAACCCTCA	0.672													6	36					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50789892	50789892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50789892C>T	uc002prr.1	+	32	4617	c.4570C>T	c.(4570-4572)CGG>TGG	p.R1524W	MYH14_uc010enu.1_Missense_Mutation_p.R1565W|MYH14_uc002prq.1_Missense_Mutation_p.R1532W|MYH14_uc010ycb.1_Intron|MYH14_uc002prs.1_5'UTR	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1524	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GCGGCAGAACCGGGCCCTGCG	0.711													5	17					0	0	1	0	0
NAPSB	256236	broad.mit.edu	37	19	50838088	50838088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50838088C>T	uc002prw.2	-	7	927	c.151G>A	c.(151-153)GAG>AAG	p.E51K	NR1H2_uc002prv.3_Intron	NR_002798				Homo sapiens napsin B pseudogene, mRNA sequence.											central_nervous_system(1)	1						GACCTCACCTCCCCAGCCAGC	0.607													5	7					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50961914	50961914	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:50961914C>T	uc002psf.2	+	21	2460	c.2409C>T	c.(2407-2409)ACC>ACT	p.T803T		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	803	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		ATCTCCCGACCGGAGCCAGAA	0.662													9	35					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51165626	51165627	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51165626_51165627GG>AA	uc002psx.1	-	23	6100_6101	c.6081_6082CC>TT	c.(6079-6084)CCCCTC>CCTTTC	p.L2028F	SHANK1_uc002psw.1_Missense_Mutation_p.L1412F	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2028					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCTGGGTAGAGGGGTCCGGAAG	0.713													9	10					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51329192	51329192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51329192C>T	uc002ptl.2	-	5	662	c.631G>A	c.(631-633)GGA>AGA	p.G211R	KLK1_uc002ptk.1_5'Flank|KLK1_uc010ycg.1_5'Flank|KLK15_uc002ptm.2_Missense_Mutation_p.G126R|KLK15_uc002ptn.2_3'UTR|KLK15_uc002pto.2_Missense_Mutation_p.G210R|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_3'UTR|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	211	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		ACCAGGGGTCCCCCAGAGTCA	0.537													7	34					0	0	1	0	0
KLK8	11202	broad.mit.edu	37	19	51503756	51503756	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51503756G>A	uc002pur.1	-	3	333	c.154C>T	c.(154-156)CAG>TAG	p.Q52*	KLK9_uc002puw.1_RNA|KLK8_uc002puq.1_Nonsense_Mutation_p.Q97*|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Nonsense_Mutation_p.Q52*|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	52	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		TGCTGGCCCTGGAACAAGGCC	0.607													28	47					0	0	1	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51628483	51628483	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51628483G>A	uc002pvu.2	+	1	319	c.252G>A	c.(250-252)TGG>TGA	p.W84*	SIGLEC9_uc010yct.1_Nonsense_Mutation_p.W84*	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	84	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GGGCAGTGTGGGAGGAGACTC	0.567													19	66					0	0	1	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51630492	51630492	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51630492C>T	uc002pvu.2	+	4	1021	c.954C>T	c.(952-954)TTC>TTT	p.F318F	SIGLEC9_uc010yct.1_Silent_p.F318F	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	318	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		CAGCTGAATTCACCTGCAGAG	0.627													6	25					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51650055	51650055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51650055G>A	uc002pvv.1	+	5	1141	c.1072G>A	c.(1072-1074)GGA>AGA	p.G358R	SIGLEC7_uc002pvw.1_Missense_Mutation_p.G265R|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	358	Helical; (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		GGCGGTCGGGGGAGCTGGAGC	0.567													43	58					0	0	1	0	0
C19orf75	284369	broad.mit.edu	37	19	51768643	51768643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51768643C>T	uc002pwb.1	+	3	425	c.44C>T	c.(43-45)TCC>TTC	p.S15F	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	15						integral to membrane				ovary(1)|pancreas(1)	2						CTGCTCAACTCCTCTTGCTCC	0.572													35	64					0	0	1	0	0
C19orf75	284369	broad.mit.edu	37	19	51770765	51770765	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51770765T>G	uc002pwb.1	+	5	930	c.549T>G	c.(547-549)TTT>TTG	p.F183L	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Missense_Mutation_p.F89L	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	183						integral to membrane				ovary(1)|pancreas(1)	2						TCGCCACATTTTCTGAGAGCC	0.453													53	62					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919272	51919272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51919272C>T	uc002pwo.2	-	5	1520	c.904G>A	c.(904-906)GGC>AGC	p.G302S	SIGLEC10_uc002pwp.2_Missense_Mutation_p.G244S|SIGLEC10_uc002pwq.2_Missense_Mutation_p.G244S|SIGLEC10_uc002pwr.2_Missense_Mutation_p.G302S|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Missense_Mutation_p.G254S|SIGLEC10_uc010eow.2_Missense_Mutation_p.G114S|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	302	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGTCTAGGGCCCCAGGGATGG	0.677													7	37					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955670	51955670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51955670C>T	uc002pwt.2	-	7	1530	c.1463G>A	c.(1462-1464)AGG>AAG	p.R488K	SIGLEC8_uc010yda.1_Missense_Mutation_p.R379K|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Missense_Mutation_p.R395K	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	488	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GTTGTGATTCCTCAAACAGGC	0.413													22	93					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955726	51955726	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51955726T>C	uc002pwt.2	-	7	1474	c.1407A>G	c.(1405-1407)GAA>GAG	p.E469E	SIGLEC8_uc010yda.1_Silent_p.E360E|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Silent_p.E376E	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	469	Cytoplasmic (Potential).|SLAM-like motif.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCTCCGAGTATTCACTGTCAG	0.537													51	75					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958677	51958677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51958677C>T	uc002pwt.2	-	4	1113	c.1046G>A	c.(1045-1047)GGC>GAC	p.G349D	SIGLEC8_uc010yda.1_Missense_Mutation_p.G240D|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.G256D	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	349	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CCCACCTGTGCCCTCATTCTG	0.627													8	39					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986440	51986440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:51986440G>A	uc002pwv.1	+	5	1026	c.1026G>A	c.(1024-1026)ATG>ATA	p.M342I		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	342	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		ATGCAAAGATGAACCTCTCGA	0.527													25	89					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52003212	52003212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52003212C>T	uc002pwx.1	-	2	826	c.770G>A	c.(769-771)TGG>TAG	p.W257*	SIGLEC12_uc002pww.1_Nonsense_Mutation_p.W139*|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	257	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TATGTAGTTCCATTTCCTGCT	0.557													12	58					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52003319	52003319	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52003319G>A	uc002pwx.1	-	2	719	c.663C>T	c.(661-663)CTC>CTT	p.L221L	SIGLEC12_uc002pww.1_Silent_p.L103L|SIGLEC12_uc010eoy.1_Intron	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	221	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCCCAAGGAGGAGGAATCGAC	0.542													46	60					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52003509	52003509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52003509G>A	uc002pwx.1	-	2	529	c.473C>T	c.(472-474)TCG>TTG	p.S158L	SIGLEC12_uc002pww.1_Missense_Mutation_p.S40L|SIGLEC12_uc010eoy.1_Intron	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	158	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CACAGTCACCGACTCTGGCAC	0.572													20	67					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034461	52034461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52034461C>T	uc002pwy.2	-	2	542	c.380G>A	c.(379-381)TGG>TAG	p.W127*	SIGLEC6_uc002pwz.2_Nonsense_Mutation_p.W127*|SIGLEC6_uc002pxa.2_Nonsense_Mutation_p.W127*|SIGLEC6_uc010ydb.1_Nonsense_Mutation_p.W80*|SIGLEC6_uc010ydc.1_Nonsense_Mutation_p.W116*|SIGLEC6_uc010eoz.1_Nonsense_Mutation_p.W116*|SIGLEC6_uc010epb.1_Nonsense_Mutation_p.W80*|SIGLEC6_uc010epa.1_Nonsense_Mutation_p.W116*	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	127	Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GTATTTCATCCATTTGGACTT	0.537													47	69					0	0	1	0	0
ZNF175	7728	broad.mit.edu	37	19	52090935	52090935	+	Missense_Mutation	SNP	G	A	A	rs144001773		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52090935G>A	uc002pxb.2	+	5	1729	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K		NM_007147	NP_009078	Q9Y473	ZN175_HUMAN	zinc finger protein 175	451	C2H2-type 7.				response to virus	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000426)|OV - Ovarian serous cystadenocarcinoma(262;0.0257)		TGTGTGTATCGAATGCGGGCA	0.488													8	29					0	0	1	0	0
ZNF175	7728	broad.mit.edu	37	19	52091390	52091390	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52091390C>T	uc002pxb.2	+	5	2184	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F	uc002pxc.1_5'Flank	NM_007147	NP_009078	Q9Y473	ZN175_HUMAN	zinc finger protein 175	602	C2H2-type 12.				response to virus	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000426)|OV - Ovarian serous cystadenocarcinoma(262;0.0257)		GGTCAAATTTCCATAAACATC	0.423													36	136					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130500	52130500	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52130500C>T	uc002pxe.2	-	7	1423	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	428	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GGTTCGATCTCCCTGCAGAAA	0.562													10	50					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52132766	52132766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52132766C>T	uc002pxe.2	-	3	684	c.545G>A	c.(544-546)GGG>GAG	p.G182E		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	182	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GAGGGCATTCCCCGTCCAGGA	0.657													4	12					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147228	52147228	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52147228G>A	uc002pxf.3	-	5	936	c.816C>T	c.(814-816)CTC>CTT	p.L272L		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	272	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		CTGTGCAGGCGAGGAACAGGG	0.617													25	33					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249356	52249356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52249356G>A	uc002pxq.2	-	2	987	c.892C>T	c.(892-894)CCC>TCC	p.P298S		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	298	Helical; Name=7; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	TAGAGCATGGGGTTGAGGCAG	0.547													34	44					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249802	52249802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52249802G>A	uc002pxq.2	-	2	541	c.446C>T	c.(445-447)CCC>CTC	p.P149L		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	149	Helical; Name=4; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CATCACCCAGGGCCCAATGAT	0.552													35	40					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52569877	52569877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52569877G>A	uc002pyl.1	-	5	1462	c.910C>T	c.(910-912)CAT>TAT	p.H304Y	ZNF841_uc010ydh.1_Missense_Mutation_p.H420Y|ZNF841_uc010epk.1_Missense_Mutation_p.H304Y	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	304	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGATTATATGATGTGCAGTG	0.393													5	7					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52569978	52569978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52569978G>A	uc002pyl.1	-	5	1361	c.809C>T	c.(808-810)TCC>TTC	p.S270F	ZNF841_uc010ydh.1_Missense_Mutation_p.S386F|ZNF841_uc010epk.1_Missense_Mutation_p.S270F	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	270	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCAAGAGAGGAACTTTGACT	0.403													6	7					0	0	1	0	0
ZNF610	162963	broad.mit.edu	37	19	52869729	52869729	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52869729T>A	uc002pyx.3	+	6	1504	c.1098T>A	c.(1096-1098)CAT>CAA	p.H366Q	ZNF610_uc002pyy.3_Missense_Mutation_p.H366Q|ZNF610_uc002pyz.3_Missense_Mutation_p.H323Q|ZNF610_uc002pza.2_Missense_Mutation_p.H366Q	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	366	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		AAATAATTCATAGTACAGAGA	0.428													19	49					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52941580	52941580	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:52941580G>A	uc002pzk.2	+	4	967	c.906G>A	c.(904-906)AGG>AGA	p.R302R	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.R289R	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	302	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACAGCATAGGAAAATTCATA	0.398													6	22					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53014261	53014261	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53014261G>A	uc002pzp.3	+	6	871	c.627G>A	c.(625-627)GGG>GGA	p.G209G		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	124	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ATAACTATGGGAATAATTTTT	0.358													18	66					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53015110	53015110	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53015110C>T	uc002pzp.3	+	6	1720	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	267	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ACAAGACCTTCAGTCACAGGT	0.398													12	56					0	0	1	0	0
ZNF137	7696	broad.mit.edu	37	19	53100490	53100490	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53100490C>T	uc002pzt.2	+	1		c.554C>T				NR_023311				Homo sapiens zinc finger protein 137, mRNA (cDNA clone IMAGE:40016639).												0				GBM - Glioblastoma multiforme(134;0.0212)|OV - Ovarian serous cystadenocarcinoma(262;0.0221)		TAGGAGAATTCATACAGGAGA	0.408													4	13					0	0	1	0	0
ZNF83	55769	broad.mit.edu	37	19	53117713	53117713	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53117713C>T	uc002pzu.3	-	2	1349	c.105G>A	c.(103-105)GGG>GGA	p.G35G	ZNF83_uc002pzv.3_Silent_p.G35G|ZNF83_uc010eps.2_Silent_p.G35G|ZNF83_uc010ept.2_Silent_p.G35G|ZNF83_uc010epu.2_Silent_p.G35G|ZNF83_uc010epv.2_Silent_p.G35G|ZNF83_uc010epw.2_Silent_p.G35G|ZNF83_uc010epx.2_Silent_p.G35G|ZNF83_uc010epy.2_Silent_p.G35G|ZNF83_uc010epz.2_Silent_p.G35G|ZNF83_uc010eqb.1_Silent_p.G35G	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	35						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TATATATTTTCCCTTCAGCTT	0.398													6	38					0	0	1	0	0
ZNF611	81856	broad.mit.edu	37	19	53208331	53208331	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53208331G>A	uc002pzz.2	-	7	2294	c.1977C>T	c.(1975-1977)TTC>TTT	p.F659F	ZNF611_uc010eqc.2_Silent_p.F589F|ZNF611_uc010ydo.1_Silent_p.F589F|ZNF611_uc010ydr.1_Silent_p.F590F|ZNF611_uc010ydp.1_Silent_p.F659F|ZNF611_uc010ydq.1_Silent_p.F659F|ZNF611_uc002qaa.3_Silent_p.F589F	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	659	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		AATTACGCACGAAAGCCTTGT	0.408													30	96					0	0	1	0	0
ZNF28	7576	broad.mit.edu	37	19	53303290	53303290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53303290C>T	uc002qad.2	-	4	1928	c.1808G>A	c.(1807-1809)GGA>GAA	p.G603E	ZNF28_uc002qac.2_Missense_Mutation_p.G550E|ZNF28_uc010eqe.2_Missense_Mutation_p.G549E	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	603					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		AGGTTTCTCTCCAGTATGAAC	0.448													36	126					0	0	1	0	0
ZNF320	162967	broad.mit.edu	37	19	53377316	53377316	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53377316G>A	uc010eqh.1	-	2		c.193C>T			ZNF320_uc010eqi.1_RNA			A2RRD8	ZN320_HUMAN	Homo sapiens full length insert cDNA clone ZD42C02.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TAAGTCTCTGGAAATCAATCC	0.418													4	23					0	0	1	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453642	53453642	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53453642G>A	uc002qal.1	-	5	1687	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.F446F	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	462	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		ACTTCCGACTGAAACTCCTGC	0.408													28	62					0	0	1	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453973	53453973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53453973C>T	uc002qal.1	-	5	1356	c.1055G>A	c.(1054-1056)CGA>CAA	p.R352Q	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.R336Q	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	352	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GGCTGAATTTCGACCAAAAGT	0.423													31	90					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473406	53473406	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53473406G>A	uc002qan.3	-	4		c.1095C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TGAATTACAAGGGATGACTTG	0.388													6	30					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473650	53473650	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53473650G>A	uc002qan.3	-	4		c.851C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						CTTCCTGGAGGAAATTATTCC	0.348													11	29					0	0	1	0	0
ZNF160	90338	broad.mit.edu	37	19	53572700	53572700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53572700G>A	uc010eqk.2	-	7	1503	c.1087C>T	c.(1087-1089)CAT>TAT	p.H363Y	ZNF160_uc002qaq.3_Missense_Mutation_p.H363Y|ZNF160_uc002qar.3_Missense_Mutation_p.H363Y	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	363	C2H2-type 4.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TCTCCAGTATGAATTAACTGA	0.388													17	66					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53958276	53958276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53958276C>T	uc010eqp.2	+	7	973	c.515C>T	c.(514-516)TCC>TTC	p.S172F	ZNF761_uc010ydy.1_Missense_Mutation_p.S118F|ZNF761_uc002qbt.1_Missense_Mutation_p.S118F	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CACGATGCTTCCTTGGTTTCA	0.383													23	81					0	0	1	0	0
ZNF813	126017	broad.mit.edu	37	19	53994390	53994390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53994390G>A	uc002qbu.2	+	4	1032	c.904G>A	c.(904-906)GAA>AAA	p.E302K	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	302	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		TTACAAATGTGAAGAATGTGA	0.388													13	52					0	0	1	0	0
ZNF813	126017	broad.mit.edu	37	19	53994440	53994440	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:53994440G>A	uc002qbu.2	+	4	1082	c.954G>A	c.(952-954)AGG>AGA	p.R318R	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	318	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		AAAGACATAGGAGAATTCATG	0.398													23	70					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080403	54080403	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54080403C>T	uc002qbx.1	+	7	2023	c.589C>T	c.(589-591)CGA>TGA	p.R197*	ZNF331_uc002qby.1_Nonsense_Mutation_p.R197*|ZNF331_uc002qbz.1_Nonsense_Mutation_p.R197*|ZNF331_uc002qca.1_Nonsense_Mutation_p.R197*|ZNF331_uc010eqr.1_Nonsense_Mutation_p.R197*|ZNF331_uc002qcb.1_Nonsense_Mutation_p.R197*|ZNF331_uc002qcc.1_Nonsense_Mutation_p.R197*|ZNF331_uc002qcd.1_Nonsense_Mutation_p.R197*	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	197	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GAAGGCTTTTCGATGGGGCTC	0.453			T	?	follicular thyroid adenoma								22	60					0	0	1	0	0
MIR1283-1	100302265	broad.mit.edu	37	19	54191757	54191757	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54191757G>A	hsa-mir-1283-1|MI0003832	+			c.23G>A			MIR520A_hsa-mir-520a|MI0003149_5'Flank																	0						GTCTACAAAGGAAAGCGCTTT	0.408													38	43					0	0	1	0	0
MIR519B	574469	broad.mit.edu	37	19	54198494	54198494	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54198494C>T	hsa-mir-519b|MI0003151	+			c.28C>T			MIR525_hsa-mir-525|MI0003152_5'Flank																	0						GAGGGAAGCGCTTTCTGTTGT	0.403													47	54					0	0	1	0	0
MIR526A2	574486	broad.mit.edu	37	19	54230225	54230225	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54230225C>T	hsa-mir-526a-2|MI0003168	+			c.50C>T			MIR518E_hsa-mir-518e|MI0003169_5'Flank																	0						GAACATGCATCCTTTCAGAGG	0.418													24	66					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314140	54314140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54314140C>T	uc002qch.3	-	3	993	c.773G>A	c.(772-774)AGT>AAT	p.S258N	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.S258N|NLRP12_uc002qcj.3_Missense_Mutation_p.S258N|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.S258N	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	258	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TTCCGTGGCACTCTGGTTCAT	0.567													15	25					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54401230	54401230	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54401230C>T	uc002qcq.1	+	10	1239	c.957C>T	c.(955-957)CCC>CCT	p.P319P	PRKCG_uc010yef.1_Missense_Mutation_p.P290L|PRKCG_uc010yeg.1_Silent_p.P319P|PRKCG_uc010yeh.1_Silent_p.P206P	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	319					activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GGATGGGcccctcttcctctc	0.483													33	127					0	0	1	0	0
OSCAR	126014	broad.mit.edu	37	19	54600214	54600214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54600214C>T	uc002qdd.2	-	4	500	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	OSCAR_uc002qcy.2_Missense_Mutation_p.R107Q|OSCAR_uc002qcz.2_Missense_Mutation_p.R103Q|OSCAR_uc002qda.2_Missense_Mutation_p.R107Q|OSCAR_uc002qdb.2_Missense_Mutation_p.R92Q|OSCAR_uc010erc.2_Silent_p.P70P|OSCAR_uc002qdc.2_Missense_Mutation_p.R117Q	NM_206818	NP_996554	Q8IYS5	OSCAR_HUMAN	osteoclast-associated receptor isoform 1	103	Ig-like 1.					extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)					GTCTGGCCTTCGGTAGCAGCA	0.632													19	18					0	0	1	0	0
CNOT3	4849	broad.mit.edu	37	19	54656727	54656727	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54656727C>T	uc002qdj.1	+	16	2339	c.2028C>T	c.(2026-2028)TAC>TAT	p.Y676Y	CNOT3_uc010yel.1_Silent_p.Y676Y|CNOT3_uc002qdi.2_Missense_Mutation_p.T588I|CNOT3_uc002qdk.1_Silent_p.Y676Y|CNOT3_uc010ere.1_RNA|CNOT3_uc002qdl.2_Silent_p.Y131Y	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	676					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TCATCTTCTACTATCTGGAGG	0.687													28	118					0	0	1	0	0
LILRB3	11025	broad.mit.edu	37	19	54721255	54721255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54721255G>A	uc002qef.1	-	12	1793	c.1682C>T	c.(1681-1683)TCA>TTA	p.S561L	LILRB3_uc002qee.1_Missense_Mutation_p.S562L|LILRB3_uc002qeh.1_Missense_Mutation_p.S561L|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Missense_Mutation_p.S561L|LILRA6_uc002qek.1_Missense_Mutation_p.S562L|LILRB3_uc010erh.1_Missense_Mutation_p.S578L|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.S561L|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.S562L|LILRB3_uc002qep.1_Missense_Mutation_p.S562L|LILRB3_uc002qeq.1_Missense_Mutation_p.S561L|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.S562L	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	561	Cytoplasmic (Potential).			S -> P (in Ref. 2; AAB87667).	cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCCAGACAGTGAGGAGGGAGG	0.587													12	44					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54782698	54782698	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54782698G>A	uc002qfb.2	-	6	1190	c.924C>T	c.(922-924)GCC>GCT	p.A308A	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.A308A|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.A308A|LILRB2_uc010yet.1_Silent_p.A192A|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	308	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTCGCTGGGGGCCGAGCACT	0.647													13	24					0	0	1	0	0
LILRB2	10288	broad.mit.edu	37	19	54783910	54783910	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54783910G>A	uc002qfb.2	-	4	357	c.91C>T	c.(91-93)CTG>TTG	p.L31L	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.L31L|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.L31L|LILRB2_uc010yet.1_Intron|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	31	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCAGCCCACAGGGTGGGCTTG	0.562													29	134					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54848860	54848860	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54848860G>A	uc002qfj.2	-	5	820	c.763C>T	c.(763-765)CTG>TTG	p.L255L	LILRA4_uc002qfi.2_Silent_p.L189L	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	255	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TCCTTGTACAGAGTGTATCTG	0.662													13	19					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54871680	54871680	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:54871680C>T	uc002qfk.1	-	4	675	c.365_splice	c.e4-1	p.E122_splice	LAIR1_uc002qfl.1_Intron|LAIR1_uc002qfm.1_Splice_Site_p.E121_splice|LAIR1_uc002qfn.1_Intron|LAIR1_uc010yex.1_Splice_Site_p.E115_splice|LAIR1_uc002qfo.2_Splice_Site_p.E104_splice	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like							integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		CCAGAGGTTTCTGTAAACAGG	0.612													12	70					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55086354	55086354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55086354C>T	uc002qgg.3	+	4	598	c.509C>T	c.(508-510)TCC>TTC	p.S170F	LILRA2_uc010ern.2_Missense_Mutation_p.S170F|LILRA2_uc002qgf.2_Missense_Mutation_p.S170F|LILRA2_uc010yfe.1_Missense_Mutation_p.S170F|LILRA2_uc010yff.1_Missense_Mutation_p.S158F|LILRA2_uc010ero.2_Missense_Mutation_p.S158F|LILRA2_uc010yfg.1_Missense_Mutation_p.S170F	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	170	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		AACTCCCATTCCCATGCCCGT	0.582													63	73					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55086388	55086388	+	Silent	SNP	C	T	T	rs143437645		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55086388C>T	uc002qgg.3	+	4	632	c.543C>T	c.(541-543)TCC>TCT	p.S181S	LILRA2_uc010ern.2_Silent_p.S181S|LILRA2_uc002qgf.2_Silent_p.S181S|LILRA2_uc010yfe.1_Silent_p.S181S|LILRA2_uc010yff.1_Silent_p.S169S|LILRA2_uc010ero.2_Silent_p.S169S|LILRA2_uc010yfg.1_Silent_p.S181S	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	181	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CCATCTTCTCCGTGGGCCCCG	0.567													29	104					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55098686	55098686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55098686C>T	uc002qgg.3	+	8	1414	c.1325C>T	c.(1324-1326)CCC>CTC	p.P442L	LILRA2_uc010ern.2_3'UTR|LILRA2_uc002qgf.2_Missense_Mutation_p.P425L|LILRA2_uc010ero.2_Missense_Mutation_p.P413L|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	442	Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GGCCAACACCCCCAGGATTAC	0.592													40	39					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55144763	55144763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55144763G>A	uc002qgj.2	+	8	1595	c.1255G>A	c.(1255-1257)GTC>ATC	p.V419I	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.V419I|LILRB1_uc002qgk.2_Missense_Mutation_p.V419I|LILRB1_uc002qgm.2_Missense_Mutation_p.V419I|LILRB1_uc010erq.2_Missense_Mutation_p.V419I|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	419	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GGAGCTCGTGGTCTCAGGTGG	0.637										HNSCC(37;0.09)			25	56					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55144765	55144765	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55144765C>T	uc002qgj.2	+	8	1597	c.1257C>T	c.(1255-1257)GTC>GTT	p.V419V	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.V419V|LILRB1_uc002qgk.2_Silent_p.V419V|LILRB1_uc002qgm.2_Silent_p.V419V|LILRB1_uc010erq.2_Silent_p.V419V|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	419	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGCTCGTGGTCTCAGGTGGGG	0.637										HNSCC(37;0.09)			19	54					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55146590	55146590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55146590G>A	uc002qgj.2	+	12	1859	c.1519G>A	c.(1519-1521)GCT>ACT	p.A507T	LILRB1_uc010erp.1_Missense_Mutation_p.A122T|LILRB1_uc002qgl.2_Missense_Mutation_p.A507T|LILRB1_uc002qgk.2_Missense_Mutation_p.A508T|LILRB1_uc002qgm.2_Missense_Mutation_p.A508T|LILRB1_uc010erq.2_Missense_Mutation_p.A491T|LILRB1_uc010err.2_Intron	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	507	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCCTGCAGGGGCTGTGGGGCC	0.617										HNSCC(37;0.09)			5	20					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55175231	55175231	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55175231C>T	uc002qgp.2	+	3	452	c.90C>T	c.(88-90)ACC>ACT	p.T30T	LILRB4_uc002qgo.1_Silent_p.T71T|LILRB4_uc002qgq.2_Silent_p.T30T|LILRB4_uc010ers.1_Intron|LILRB4_uc002qgr.2_Silent_p.T71T|LILRB4_uc010ert.2_Silent_p.T71T|LILRB4_uc010eru.2_Silent_p.T59T	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	30	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CCAAACCCACCCTCTGGGCTG	0.622													32	32					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55177876	55177876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55177876G>A	uc002qgp.2	+	9	1339	c.977G>A	c.(976-978)GGA>GAA	p.G326E	LILRB4_uc002qgq.2_Missense_Mutation_p.G326E|LILRB4_uc002qgr.2_Missense_Mutation_p.G367E|LILRB4_uc010ert.2_Missense_Mutation_p.G367E|LILRB4_uc010eru.2_Missense_Mutation_p.G355E	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	326	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GACGTCCAGGGAGAAAACTTC	0.587													10	37					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55221331	55221331	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55221331C>T	uc002qgs.1	+	1		c.1731C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						ACTCTTCTTTCCCTCCAGGCG	0.622													4	14					0	0	1	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55263828	55263828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55263828G>A	uc002qgv.2	+	8	901	c.883G>A	c.(883-885)GAA>AAA	p.E295K	KIR2DS4_uc010yfj.1_5'Flank|KIR2DL3_uc002qgx.2_Missense_Mutation_p.E295K|KIR2DL3_uc002qgy.2_Missense_Mutation_p.E197K|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_5'Flank	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	295	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GGACTCTGATGAACAAGACCC	0.527													61	61					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286802	55286802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55286802C>T	uc002qhb.1	+	4	594	c.556C>T	c.(556-558)CCT>TCT	p.P186S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.P186S	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	186	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGCTGACTTTCCTCTGGGCCC	0.562													44	62					0	0	1	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55316320	55316320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55316320G>A	uc010yfm.1	+	3	189	c.149G>A	c.(148-150)CGG>CAG	p.R50Q	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Missense_Mutation_p.R45Q|KIR2DL4_uc002qhg.2_Missense_Mutation_p.R50Q|KIR2DL4_uc002qhi.2_Missense_Mutation_p.R50Q|KIR2DL4_uc002qhh.2_Intron|KIR2DL4_uc002qhj.2_Missense_Mutation_p.R50Q|KIR2DL4_uc002qhf.2_Intron|KIR2DL4_uc010esd.2_Missense_Mutation_p.R50Q|KIR2DL4_uc010ese.2_5'Flank	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	50	Ig-like C2-type 1.|Extracellular (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		GTGACTCTTCGGTGTCACTAT	0.547													27	43					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55350885	55350885	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55350885C>T	uc002qhm.1	+	4	419	c.373C>T	c.(373-375)CTA>TTA	p.L125L	KIR2DS4_uc010yfj.1_Silent_p.L118L|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.L125L|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	125	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CCTTCCAGGTCTATATGAGAA	0.572													29	53					0	0	1	0	0
NCR1	9437	broad.mit.edu	37	19	55420731	55420731	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55420731C>T	uc002qib.2	+	4	521	c.483C>T	c.(481-483)TCC>TCT	p.S161S	NCR1_uc002qic.2_Silent_p.S161S|NCR1_uc002qie.2_Silent_p.S161S|NCR1_uc002qid.2_Silent_p.S66S|NCR1_uc002qif.2_Silent_p.S66S|NCR1_uc010esj.2_Silent_p.S54S	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	161	Extracellular (Potential).|Ig-like 2.				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		AGGGAAGATCCAGCCACGTAC	0.567													40	33					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450285	55450285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55450285C>T	uc002qih.3	-	4	1978	c.1902G>A	c.(1900-1902)ATG>ATA	p.M634I	NLRP7_uc002qig.3_Missense_Mutation_p.M634I|NLRP7_uc002qii.3_Missense_Mutation_p.M634I|NLRP7_uc010esk.2_Missense_Mutation_p.M634I|NLRP7_uc010esl.2_Missense_Mutation_p.M662I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	634	LRR 1.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTTCAAAATCCATGTAATTCT	0.473													43	41					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55494591	55494591	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55494591T>C	uc002qij.2	+	6	1611	c.1525T>C	c.(1525-1527)TTT>CTT	p.F509L	NLRP2_uc010yfp.1_Missense_Mutation_p.F486L|NLRP2_uc010esn.2_Missense_Mutation_p.F485L|NLRP2_uc010eso.2_Missense_Mutation_p.F506L|NLRP2_uc010esp.2_Missense_Mutation_p.F487L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	509	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTTCCAGCAGTTTCTCACTGC	0.582													35	47					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55693471	55693471	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:55693471G>A	uc002qjq.2	-	19	3184	c.3111C>T	c.(3109-3111)CTC>CTT	p.L1037L	PTPRH_uc010esv.2_Silent_p.L859L|SYT5_uc002qjm.1_5'Flank|SYT5_uc002qjp.2_5'Flank|SYT5_uc002qjn.1_5'Flank|SYT5_uc002qjo.1_5'Flank	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	1037	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		GCAGCTGCCGGAGCAGGACGT	0.617													36	76					0	0	1	0	0
ZNF580	51157	broad.mit.edu	37	19	56153915	56153915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56153915C>T	uc002qlo.2	+	2	211	c.41C>T	c.(40-42)TCC>TTC	p.S14F	ZNF580_uc002qlm.2_Missense_Mutation_p.S27F|ZNF581_uc002qln.2_Intron|ZNF580_uc002qlp.2_Missense_Mutation_p.S14F|ZNF580_uc010ygd.1_Missense_Mutation_p.S14F|ZNF581_uc002qlq.2_5'Flank	NM_207115	NP_996998	Q9UK33	ZN580_HUMAN	zinc finger protein 580	14	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CCTCGGTCCTCCTCTCCGGAG	0.597													10	27					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56226516	56226516	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56226516G>A	uc002qly.2	-	6	2434	c.2406C>T	c.(2404-2406)TCC>TCT	p.S802S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	802	LRR 3.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GATCGAGGAGGGACAGGGACT	0.547													15	52					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243460	56243460	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56243460T>C	uc002qly.2	-	2	1765	c.1737A>G	c.(1735-1737)GTA>GTG	p.V579V		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	579						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ATGAAGCTATTACCAAATGTT	0.353													15	26					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56249680	56249680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56249680C>T	uc002qly.2	-	1	89	c.61G>A	c.(61-63)GAA>AAA	p.E21K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	21	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CAAAACTCTTCCTTTCTGAGC	0.453													82	89					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320313	56320313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56320313C>T	uc010ygf.1	-	5	2374	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K	NLRP11_uc002qlz.2_Missense_Mutation_p.E456K|NLRP11_uc002qmb.2_Missense_Mutation_p.E456K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	555							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACAAATTCTTCTTCCCGATTC	0.428													60	88					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56321341	56321341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56321341G>A	uc010ygf.1	-	5	1346	c.635C>T	c.(634-636)GCT>GTT	p.A212V	NLRP11_uc002qlz.2_Missense_Mutation_p.A113V|NLRP11_uc002qmb.2_Missense_Mutation_p.A113V|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	212	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TGCAATGGGAGCCTGGCCGTC	0.483													31	45					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56321612	56321612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56321612G>A	uc010ygf.1	-	5	1075	c.364C>T	c.(364-366)CGT>TGT	p.R122C	NLRP11_uc002qlz.2_Missense_Mutation_p.R23C|NLRP11_uc002qmb.2_Missense_Mutation_p.R23C|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	122							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GAAACGTCACGAAAAAATTTA	0.383													7	25					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56363573	56363573	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56363573C>A	uc002qmd.3	+	2	549	c.127C>A	c.(127-129)CCC>ACC	p.P43T		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	43	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CAAGCAGATTCCCTGGACTGA	0.413													37	43					1.836e-18	1.85679e-18	1	1	0
NLRP4	147945	broad.mit.edu	37	19	56370067	56370067	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56370067G>A	uc002qmd.3	+	3	1730	c.1308G>A	c.(1306-1308)AAG>AAA	p.K436K	NLRP4_uc002qmf.2_Silent_p.K361K|NLRP4_uc010etf.2_Silent_p.K267K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	436	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGGGCACCAAGATACTTCTGA	0.537													29	91					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56370234	56370234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56370234G>A	uc002qmd.3	+	3	1897	c.1475G>A	c.(1474-1476)AGG>AAG	p.R492K	NLRP4_uc002qmf.2_Missense_Mutation_p.R417K|NLRP4_uc010etf.2_Missense_Mutation_p.R323K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	492							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAAAAAGCAAGGAGAGCACAT	0.418													38	64					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56416366	56416366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56416366C>T	uc010ygg.1	-	8	2585	c.2560G>A	c.(2560-2562)GGC>AGC	p.G854S		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	854	LRR 3.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGCTTTATGCCATCATCTTGG	0.493													10	52					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466462	56466462	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56466462G>A	uc002qmh.2	+	3	1109	c.1038G>A	c.(1036-1038)CTG>CTA	p.L346L	NLRP8_uc010etg.2_Silent_p.L346L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	346	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGCCCTTGCTGAAATGTCCCT	0.463													22	48					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466654	56466654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56466654G>A	uc002qmh.2	+	3	1301	c.1230G>A	c.(1228-1230)ATG>ATA	p.M410I	NLRP8_uc010etg.2_Missense_Mutation_p.M410I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	410	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AACAGCAAATGGAGAGAGGAA	0.483													46	46					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56467093	56467093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56467093C>T	uc002qmh.2	+	3	1740	c.1669C>T	c.(1669-1671)CTT>TTT	p.L557F	NLRP8_uc010etg.2_Missense_Mutation_p.L557F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	557						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCACATGGGACTTTTCTTATT	0.468													9	58					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56477621	56477621	+	Silent	SNP	C	T	T	rs61740147	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56477621C>T	uc002qmh.2	+	5	2327	c.2256C>T	c.(2254-2256)ATC>ATT	p.I752I	NLRP8_uc010etg.2_Silent_p.I752I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	752						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGGACTTAATCGGTGTTTTGA	0.502													42	65					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56487560	56487560	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56487560A>T	uc002qmh.2	+	8	2838	c.2767A>T	c.(2767-2769)AAT>TAT	p.N923Y	NLRP8_uc010etg.2_Missense_Mutation_p.N904Y	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	923	LRR 5.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GCTCTGTAAAAATAAAACCCT	0.383													40	36					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56538842	56538842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56538842G>A	uc002qmj.2	+	7	1243	c.1243G>A	c.(1243-1245)GAG>AAG	p.E415K	NLRP5_uc002qmi.2_Missense_Mutation_p.E396K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	415	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CGTGGGCACAGAGAAGCTCAA	0.562													6	18					0	0	1	0	0
ZNF582	147948	broad.mit.edu	37	19	56895962	56895962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56895962C>T	uc002qmz.1	-	5	983	c.824G>A	c.(823-825)CGA>CAA	p.R275Q	ZNF582_uc002qmy.2_Missense_Mutation_p.R306Q	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	275	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TGTGTGAGTTCGCTGATGTTC	0.403													7	36					0	0	1	0	0
ZNF583	147949	broad.mit.edu	37	19	56925785	56925785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56925785G>A	uc010ygl.1	+	4	373	c.208G>A	c.(208-210)GAG>AAG	p.E70K	ZNF583_uc002qnc.2_Missense_Mutation_p.E70K|ZNF583_uc010ygm.1_Missense_Mutation_p.E70K	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	70	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		GGTGAAGAAGGAGGGAACAAG	0.443													49	80					0	0	1	0	0
ZNF583	147949	broad.mit.edu	37	19	56934704	56934704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56934704C>T	uc010ygl.1	+	5	842	c.677C>T	c.(676-678)TCC>TTC	p.S226F	ZNF583_uc002qnc.2_Missense_Mutation_p.S226F|ZNF583_uc010ygm.1_Missense_Mutation_p.S226F	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	226	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		CAGAGCTCATCCCTTACTCTT	0.378													8	48					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56972063	56972063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:56972063G>A	uc002qnd.2	-	3	317	c.155C>T	c.(154-156)TCG>TTG	p.S52L	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Missense_Mutation_p.S52L|ZNF667_uc010etm.2_5'UTR	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	52	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		CTTACCAAGCGAGACCAGGTT	0.408													23	81					0	0	1	0	0
ZNF471	57573	broad.mit.edu	37	19	57037081	57037081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57037081G>A	uc002qnh.2	+	5	1778	c.1645G>A	c.(1645-1647)GGG>AGG	p.G549R		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	549	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		TAATGAATGCGGGAAAGCCTT	0.383													15	72					0	0	1	0	0
ZNF71	58491	broad.mit.edu	37	19	57133717	57133717	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57133717C>T	uc002qnm.3	+	3	1300	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	354	C2H2-type 9.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		TGAAGCCGTTCGAGTGCAGCG	0.637													24	21					0	0	1	0	0
ZIM2	23619	broad.mit.edu	37	19	57286085	57286085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57286085C>T	uc002qnr.2	-	11	1937	c.1555G>A	c.(1555-1557)GAG>AAG	p.E519K	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.E315K|ZIM2_uc010ygr.1_Missense_Mutation_p.E315K|ZIM2_uc002qnq.2_Missense_Mutation_p.E519K|ZIM2_uc010etp.2_Missense_Mutation_p.E519K|ZIM2_uc010ygs.1_Missense_Mutation_p.E519K	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	519					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		ACAGTTTTCTCTTGAGAATGG	0.443													18	43					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325217	57325217	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57325217G>A	uc002qnu.2	-	7	4944	c.4593C>T	c.(4591-4593)ATC>ATT	p.I1531I	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.I1502I|PEG3_uc002qnv.2_Silent_p.I1531I|PEG3_uc002qnw.2_Silent_p.I1407I|PEG3_uc002qnx.2_Silent_p.I1405I|PEG3_uc010etr.2_Silent_p.I1531I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1531					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GCTCAAATATGATCATGCTGG	0.478													20	80					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57326619	57326619	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57326619T>G	uc002qnu.2	-	7	3542	c.3191A>C	c.(3190-3192)CAA>CCA	p.Q1064P	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.Q1035P|PEG3_uc002qnv.2_Missense_Mutation_p.Q1064P|PEG3_uc002qnw.2_Missense_Mutation_p.Q940P|PEG3_uc002qnx.2_Missense_Mutation_p.Q938P|PEG3_uc010etr.2_Missense_Mutation_p.Q1064P	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1064					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ATTCTCGCCTTGAGACTCCTC	0.478													23	73					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327691	57327691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57327691G>A	uc002qnu.2	-	7	2470	c.2119C>T	c.(2119-2121)CAT>TAT	p.H707Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H678Y|PEG3_uc002qnv.2_Missense_Mutation_p.H707Y|PEG3_uc002qnw.2_Missense_Mutation_p.H583Y|PEG3_uc002qnx.2_Missense_Mutation_p.H581Y|PEG3_uc010etr.2_Missense_Mutation_p.H707Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	707					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTTCGAGAATGAATTTTCTGA	0.433													25	28					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57335874	57335874	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57335874C>T	uc002qnu.2	-	1	501	c.150G>A	c.(148-150)CGG>CGA	p.R50R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_5'UTR|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.R50R|PEG3_uc002qnv.2_Silent_p.R50R|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Silent_p.R50R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	50	SCAN box.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AGATTAGGTTCCGAAACCTCT	0.502													16	75					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57640749	57640749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57640749C>T	uc002qny.2	+	4	1062	c.706C>T	c.(706-708)CCT>TCT	p.P236S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	236					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TAATGGAAATCCTAACCTAGA	0.413													36	37					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57666725	57666725	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57666725G>A	uc002qoa.1	-	5	499	c.454C>T	c.(454-456)CGA>TGA	p.R152*		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	152	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CTAGATCTTCGATTTTGGAAC	0.383													7	42					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57666741	57666741	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57666741C>T	uc002qoa.1	-	5	484	c.439_splice	c.e5-1	p.I147_splice		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		GGAACCAAATCTAAGTGGTAA	0.378													8	31					0	0	1	0	0
ZNF772	400720	broad.mit.edu	37	19	57984885	57984885	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:57984885G>A	uc002qot.2	-	5	1488	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	ZNF547_uc002qpm.3_Intron|ZNF772_uc010ygy.1_Silent_p.I368I|ZNF772_uc010ygz.1_Silent_p.I297I|ZNF772_uc010yha.1_Silent_p.I355I|ZNF772_uc002qou.2_Silent_p.I297I	NM_001024596	NP_001019767	Q68DY9	ZN772_HUMAN	zinc finger protein 772 isoform 1	409	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)|Lung(386;0.174)		TCCCACATGCGATGCACTCAT	0.423													15	71					0	0	1	0	0
ZIK1	284307	broad.mit.edu	37	19	58102135	58102135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58102135G>A	uc002qpg.2	+	4	1053	c.956G>A	c.(955-957)GGA>GAA	p.G319E	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.G264E|ZIK1_uc002qpi.2_Missense_Mutation_p.G306E|ZIK1_uc002qpj.2_Missense_Mutation_p.G216E	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	319					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		ATACACACTGGAGCAAGGCCT	0.453													16	39					0	0	1	0	0
ZNF211	10520	broad.mit.edu	37	19	58153167	58153167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58153167C>T	uc002qpq.2	+	3	1493	c.1313C>T	c.(1312-1314)TCC>TTC	p.S438F	ZNF211_uc010yhb.1_Missense_Mutation_p.S442F|ZNF211_uc002qpp.2_Missense_Mutation_p.S451F|ZNF211_uc002qpr.2_Missense_Mutation_p.S502F|ZNF211_uc002qps.2_Missense_Mutation_p.S503F|ZNF211_uc002qpt.2_Missense_Mutation_p.S450F|ZNF211_uc010yhc.1_Missense_Mutation_p.S450F|ZNF211_uc010yhd.1_Missense_Mutation_p.S377F|ZNF211_uc010yhe.1_Missense_Mutation_p.S429F	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	438	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAGCAAAGCTCCAGCTTCAGT	0.488													30	37					0	0	1	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189734	58189734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58189734G>A	uc002qpu.2	+	5	1460	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	255					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TAGATCTCAGGAAGGGTCCAT	0.507													33	26					0	0	1	0	0
ZNF586	54807	broad.mit.edu	37	19	58290889	58290889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58290889C>T	uc002qqd.2	+	3	1120	c.934C>T	c.(934-936)CAT>TAT	p.H312Y	ZNF587_uc002qqb.2_Intron|ZNF586_uc002qqe.2_3'UTR|ZNF586_uc010euh.2_Missense_Mutation_p.H269Y|ZNF586_uc002qqf.1_Intron	NM_017652	NP_060122	Q9NXT0	ZN586_HUMAN	zinc finger protein 586	312	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCAGCGAGTTCATACTGGAGA	0.448													18	41					0	0	1	0	0
ZNF256	10172	broad.mit.edu	37	19	58453234	58453234	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58453234C>T	uc002qqu.2	-	3	1177	c.942G>A	c.(940-942)CAG>CAA	p.Q314Q	ZNF256_uc010euj.2_Silent_p.Q161Q	NM_005773	NP_005764	Q9Y2P7	ZN256_HUMAN	zinc finger protein 256	314	C2H2-type 4.				multicellular organismal development|negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0155)		TATGAACTCTCTGATGTATAA	0.403													11	48					0	0	1	0	0
C19orf18	147685	broad.mit.edu	37	19	58472862	58472862	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58472862C>T	uc002qqv.2	-	5	533	c.429G>A	c.(427-429)AGG>AGA	p.R143R		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	143	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		ATAACGGTATCCTGAGGTTCT	0.448													16	65					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58489886	58489886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58489886G>A	uc002qqw.2	-	7	2780	c.2162C>T	c.(2161-2163)TCA>TTA	p.S721L	ZNF606_uc010yhp.1_Missense_Mutation_p.S631L	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	721	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		AATAAGGGATGAACTCTCATT	0.368													25	46					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58489985	58489985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58489985G>A	uc002qqw.2	-	7	2681	c.2063C>T	c.(2062-2064)TCC>TTC	p.S688F	ZNF606_uc010yhp.1_Missense_Mutation_p.S598F	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	688	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		ACAGTTAAAGGATCTTTCACA	0.403													9	47					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58491212	58491212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58491212G>A	uc002qqw.2	-	7	1454	c.836C>T	c.(835-837)CCT>CTT	p.P279L	ZNF606_uc010yhp.1_Missense_Mutation_p.P189L	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TATTCTTGCAGGGTAAATAGG	0.323													22	81					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565154	58565154	+	Missense_Mutation	SNP	C	T	T	rs143175520		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58565154C>T	uc002qrc.1	+	6	1209	c.962C>T	c.(961-963)CCG>CTG	p.P321L		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	321	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGGCCCTTTCCGTGCCCCGAG	0.632													28	33					0	0	1	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58601541	58601541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58601541C>T	uc002qri.2	-	2	403	c.94G>A	c.(94-96)GAA>AAA	p.E32K	ZSCAN18_uc002qrj.3_Missense_Mutation_p.E32K|ZSCAN18_uc010yhs.1_Intron|ZSCAN18_uc002qrh.2_Missense_Mutation_p.E32K|ZSCAN18_uc010yht.1_Missense_Mutation_p.E88K|ZSCAN18_uc002qrk.1_Missense_Mutation_p.E32K|ZSCAN18_uc002qrl.2_Missense_Mutation_p.E32K	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	32					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TCGGGTTCTTCCTGCTGGACT	0.652													20	60					0	0	1	0	0
ZNF274	10782	broad.mit.edu	37	19	58718331	58718331	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58718331C>T	uc002qrq.1	+	5	960	c.501C>T	c.(499-501)TTC>TTT	p.F167F	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Silent_p.F135F|ZNF274_uc002qrs.1_Silent_p.F62F|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	167	SCAN box.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TCCGGCAGTTCCGTTATAAGG	0.617													4	4					0	0	1	0	0
ZNF497	162968	broad.mit.edu	37	19	58868095	58868096	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58868095_58868096GG>TA	uc002qsh.1	-	3	1095_1096	c.906_907CC>TA	c.(904-909)TTCCCC>TTTACC	p.P303T	A1BG_uc002qsf.1_Intron|ZNF497_uc002qsi.1_Missense_Mutation_p.P303T|uc002qsj.1_5'Flank|uc002qsk.1_5'Flank	NM_198458	NP_940860	Q6ZNH5	ZN497_HUMAN	zinc finger protein 497	303	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0278)		TCGGCGCAGGGGAAGGGCTTCT	0.723													5	6					0	0	1	0	0
ZNF584	201514	broad.mit.edu	37	19	58929094	58929094	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58929094C>T	uc002qsp.2	+	4	1661	c.1209C>T	c.(1207-1209)GTC>GTT	p.V403V	ZNF584_uc010yia.1_RNA|ZNF584_uc002qsr.2_Silent_p.V358V|ZNF584_uc010yib.1_3'UTR	NM_173548	NP_775819	Q8IVC4	ZN584_HUMAN	zinc finger protein 584	403	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;5.3e-17)|all_epithelial(17;3.71e-12)|Lung NSC(17;8.3e-05)|Colorectal(82;0.000147)|all_lung(17;0.000386)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0271)		ACAAGAAAGTCCATACTCCAG	0.498													42	56					0	0	1	0	0
ZNF324B	388569	broad.mit.edu	37	19	58966911	58966911	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:58966911G>A	uc002qsv.1	+	4	707	c.600G>A	c.(598-600)CAG>CAA	p.Q200Q	ZNF324B_uc002qsu.1_Silent_p.Q190Q|ZNF324B_uc010euq.1_Silent_p.Q200Q	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	200					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CATGTGCACAGGAGGTCCCTG	0.662													28	31					0	0	1	0	0
SLC27A5	10998	broad.mit.edu	37	19	59012770	59012770	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:59012770G>T	uc002qtc.2	-	4	1175	c.1065C>A	c.(1063-1065)ACC>ACA	p.T355T	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	355	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CCAGAACACAGGTGGCTCCTG	0.562													34	42					5.91797e-21	5.99063e-21	1	1	0
SNTG2	54221	broad.mit.edu	37	2	1079242	1079242	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1079242C>T	uc002qwq.2	+	2	239	c.111C>T	c.(109-111)TCC>TCT	p.S37S	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Silent_p.S37S	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	37					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ATGAAGAGTCCGAAAATGCCT	0.493													19	114					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1093938	1093939	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1093938_1093939GG>AA	uc002qwq.2	+	3	395	c.267_splice	c.e3+1	p.K89_splice	SNTG2_uc002qwp.2_Splice_Site|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2						central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TGAGTATAAAGGTATGGAAATG	0.391													33	221					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1251210	1251210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1251210C>T	uc002qwq.2	+	12	1128	c.1000C>T	c.(1000-1002)CCT>TCT	p.P334S	SNTG2_uc010ewi.2_Missense_Mutation_p.P207S	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	334	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TTTCAGCACTCCTCCGGTAAG	0.547													40	18					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1481044	1481044	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1481044C>T	uc002qww.2	+	8	1097	c.1006C>T	c.(1006-1008)CTA>TTA	p.L336L	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.L336L|TPO_uc002qwr.2_Silent_p.L336L|TPO_uc002qwx.2_Silent_p.L336L|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Silent_p.L336L	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	336	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTCCCCGGCCCTAGAGAGGCA	0.701													4	35					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1491747	1491747	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1491747G>A	uc002qww.2	+	10	1843	c.1752G>A	c.(1750-1752)CGG>CGA	p.R584R	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Silent_p.R584R|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Silent_p.R411R|TPO_uc010yip.1_Silent_p.R584R|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	584	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGAGGGGCCGGGACCACGGGC	0.582													75	76					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1544401	1544401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1544401C>T	uc002qww.2	+	16	2745	c.2654C>T	c.(2653-2655)TCG>TTG	p.S885L	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.S828L|TPO_uc002qwr.2_Missense_Mutation_p.S885L|TPO_uc002qwx.2_Missense_Mutation_p.S828L|TPO_uc010yio.1_Missense_Mutation_p.S712L|TPO_uc010yip.1_Missense_Mutation_p.S841L|TPO_uc002qwy.1_Missense_Mutation_p.S181L|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	885	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTGCCCATCTCGGAGACAGGC	0.642													54	74					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1643106	1643106	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1643106C>T	uc002qxa.2	-	20	4105	c.4041G>A	c.(4039-4041)CCG>CCA	p.P1347P		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1347					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TTTTCTTGGTCGGCTTGTCCT	0.542													8	30					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1652704	1652704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1652704G>A	uc002qxa.2	-	17	2912	c.2848C>T	c.(2848-2850)CCC>TCC	p.P950S		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	950					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GTGGCGAAGGGGAGCAGCGGC	0.741													30	8					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1893202	1893202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:1893202C>T	uc002qxe.2	-	16	3158	c.2331G>A	c.(2329-2331)ATG>ATA	p.M777I	MYT1L_uc002qxd.2_Missense_Mutation_p.M775I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	777					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCTGCTTGTTCATGCTGAGGT	0.597													15	115					0	0	1	0	0
TSSC1	7260	broad.mit.edu	37	2	3197799	3197799	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:3197799G>A	uc002qxj.2	-	7	985	c.792C>T	c.(790-792)CCC>CCT	p.P264P	TSSC1_uc002qxi.2_RNA	NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	264	WD 3.						protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		GGGTCTTCACGGGTTCGGTGA	0.527													15	94					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871210	8871210	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:8871210G>A	uc002qzc.2	-	30	5138	c.4956C>T	c.(4954-4956)AGC>AGT	p.S1652S	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Silent_p.S1553S|KIDINS220_uc002qzb.2_Silent_p.S506S	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1652	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ATTCGGAAGGGCTTTTCTTGT	0.517													16	99					0	0	1	0	0
ASAP2	8853	broad.mit.edu	37	2	9541476	9541476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:9541476C>T	uc002qzh.2	+	27	3237	c.2897C>T	c.(2896-2898)TCC>TTC	p.S966F	ASAP2_uc002qzi.2_Missense_Mutation_p.S921F	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	966	SH3.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						CTCACCTTCTCCGAGGGGGAT	0.602													15	71					0	0	1	0	0
PDIA6	10130	broad.mit.edu	37	2	10937289	10937289	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:10937289G>T	uc002rau.2	-	4	402	c.264C>A	c.(262-264)TCC>TCA	p.S88S	PDIA6_uc010yjg.1_Silent_p.S85S|PDIA6_uc002rav.2_Silent_p.S140S|PDIA6_uc010yjh.1_Silent_p.S93S|PDIA6_uc002raw.2_Silent_p.S136S	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	88	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		GACCTCCTAGGGAATGATGCT	0.398													7	52					0.00198382	0.00198567	1	1	0
ROCK2	9475	broad.mit.edu	37	2	11367483	11367483	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:11367483A>T	uc002rbd.1	-	6	1214	c.765T>A	c.(763-765)GAT>GAA	p.D255E		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	255	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		GTGATATATAATCCGGTGTTC	0.408													31	209					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11716606	11716606	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:11716606C>T	uc002rbk.1	+	5	882	c.582C>T	c.(580-582)GTC>GTT	p.V194V	GREB1_uc002rbl.2_Silent_p.V194V|GREB1_uc002rbm.2_Silent_p.V84V|GREB1_uc002rbn.1_Silent_p.V194V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	194						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ATTACCTGGTCCGTAATGCAC	0.473													46	129					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11905737	11905737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:11905737C>T	uc010yjn.1	+	3	344	c.70C>T	c.(70-72)CCC>TCC	p.P24S	LPIN1_uc010yjm.1_Missense_Mutation_p.P73S|LPIN1_uc002rbt.2_Missense_Mutation_p.P24S|LPIN1_uc002rbs.2_Missense_Mutation_p.P24S|LPIN1_uc010exi.1_RNA|hsa-mir-548s|MI0014141_5'Flank	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	24	N-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GGGGCTGAATCCCGCCACACT	0.532													36	132					0	0	1	0	0
FAM84A	151354	broad.mit.edu	37	2	14774290	14774290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:14774290C>T	uc002rbz.1	+	2	429	c.187C>T	c.(187-189)CCC>TCC	p.P63S	FAM84A_uc002rca.1_5'Flank	NM_145175	NP_660158	Q96KN4	FA84A_HUMAN	family with sequence similarity 84, member A	63										pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(1;0.00969)			GGGTTGCACCCCCTGCCCGGA	0.647													6	28					0	0	1	0	0
FAM49A	81553	broad.mit.edu	37	2	16746992	16746992	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:16746992G>A	uc010exm.1	-	3	262	c.114C>T	c.(112-114)ATC>ATT	p.I38I	FAM49A_uc002rck.1_Silent_p.I38I	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	38						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			GGACGGCGCTGATCTGGTTCC	0.507													4	115					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17696571	17696571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:17696571G>A	uc002rcl.1	-	1	3136	c.3112C>T	c.(3112-3114)CCT>TCT	p.P1038S	RAD51AP2_uc010exn.1_Missense_Mutation_p.P1029S	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1038										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCCATATTAGGACCTGCTATA	0.363													12	55					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697617	17697617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:17697617G>A	uc002rcl.1	-	1	2090	c.2066C>T	c.(2065-2067)CCC>CTC	p.P689L	RAD51AP2_uc010exn.1_Missense_Mutation_p.P680L	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	689										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CATTAAAAGGGGAATTTTTTC	0.294													11	63					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698906	17698906	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:17698906G>A	uc002rcl.1	-	1	801	c.777C>T	c.(775-777)GTC>GTT	p.V259V	RAD51AP2_uc010exn.1_Silent_p.V250V	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	259										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAAACTGAGGGACACTTATTG	0.353													19	84					0	0	1	0	0
SMC6	79677	broad.mit.edu	37	2	17847771	17847771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:17847771C>T	uc002rco.2	-	27	3373	c.3077G>A	c.(3076-3078)AGG>AAG	p.R1026K	SMC6_uc010exo.2_Missense_Mutation_p.R1026K|SMC6_uc002rcn.2_Missense_Mutation_p.R1026K	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	1026					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GGCAATTCTCCTATTAACCAT	0.388													35	10					0	0	1	0	0
SMC6	79677	broad.mit.edu	37	2	17898368	17898368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:17898368C>T	uc002rco.2	-	13	1464	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K	SMC6_uc010exo.2_Missense_Mutation_p.E390K|SMC6_uc002rcn.2_Missense_Mutation_p.E390K|SMC6_uc002rcp.1_Missense_Mutation_p.E416K|SMC6_uc002rcq.2_Missense_Mutation_p.E416K|SMC6_uc002rcr.1_Missense_Mutation_p.E390K	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	390	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTTTTCAGCTCTTCAATTCGT	0.294													26	48					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18736667	18736667	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:18736667G>A	uc010exr.2	-	9	1847	c.1743C>T	c.(1741-1743)CTC>CTT	p.L581L	NT5C1B_uc002rcy.2_3'UTR|RDH14_uc002rcx.3_Silent_p.L267L	NM_033253	NP_150278	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 2	Error:Variant_position_missing_in_Q96P26_after_alignment					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CCAAATTGAAGAGTGGTTTGA	0.458													37	189					0	0	1	0	0
MATN3	4148	broad.mit.edu	37	2	20194152	20194152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:20194152C>T	uc002rdl.2	-	7	1376	c.1313G>A	c.(1312-1314)AGA>AAA	p.R438K	MATN3_uc010exu.1_Missense_Mutation_p.R396K	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	438					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGAAACAAGTCTTCGTGCTTC	0.403													4	20					0	0	1	0	0
SDC1	6382	broad.mit.edu	37	2	20403808	20403808	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:20403808G>A	uc002rdo.1	-	3	692	c.393C>T	c.(391-393)CTC>CTT	p.L131L	SDC1_uc002rdp.1_Silent_p.L131L|SDC1_uc010exv.2_Silent_p.L131L|SDC1_uc010exw.1_RNA	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	131	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		GAGTGGTCGGGAGCTGTGTGG	0.692													40	118					0	0	1	0	0
RHOB	388	broad.mit.edu	37	2	20647579	20647579	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:20647579A>T	uc002rdv.2	+	1	745	c.353A>T	c.(352-354)AAA>ATA	p.K118I		NM_004040	NP_004031	P62745	RHOB_HUMAN	ras homolog gene family, member B precursor	118	GTP (By similarity).				angiogenesis|axon guidance|cell adhesion|endosome to lysosome transport|negative regulation of cell cycle|platelet activation|positive regulation of angiogenesis|protein transport|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|transformed cell apoptosis	cytosol|late endosome membrane|nucleus|plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)|lung(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)	all_epithelial(98;4.19e-09)|Lung NSC(108;0.00452)|Ovarian(717;0.0164)		OV - Ovarian serous cystadenocarcinoma(76;1.14e-22)|Epithelial(75;7.84e-19)		GTGGCCAACAAAAAAGACCTG	0.637													30	130					0	0	1	0	0
C2orf43	60526	broad.mit.edu	37	2	20886691	20886691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:20886691G>A	uc002rec.2	-	7	983	c.950C>T	c.(949-951)TCC>TTC	p.S317F	C2orf43_uc002rea.1_Missense_Mutation_p.S317F|C2orf43_uc002reb.1_Intron|C2orf43_uc010yka.1_3'UTR|C2orf43_uc010ykb.1_Missense_Mutation_p.S187F|C2orf43_uc010ykc.1_Missense_Mutation_p.S269F|C2orf43_uc010ykd.1_3'UTR|C2orf43_uc010yke.1_Missense_Mutation_p.S275F|C2orf43_uc010ykf.1_Missense_Mutation_p.S187F	NM_021925	NP_068744	Q9H6V9	CB043_HUMAN	hypothetical protein LOC60526	317											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCCTTTAGGGAGTCAGCAAT	0.438													59	16					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225483	21225483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21225483C>T	uc002red.2	-	29	12939	c.12811G>A	c.(12811-12813)GAA>AAA	p.E4271K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4271					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAACAGTTCCCTATACATC	0.368													508	191					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225588	21225588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21225588G>A	uc002red.2	-	29	12834	c.12706C>T	c.(12706-12708)CAT>TAT	p.H4236Y		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4236					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAACCATTATGGACTTTCGAA	0.408													519	194					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229859	21229859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21229859G>A	uc002red.2	-	26	10009	c.9881C>T	c.(9880-9882)TCA>TTA	p.S3294L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3294					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TAATGTGTATGAAGGCACACG	0.458													122	646					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230075	21230075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21230075G>A	uc002red.2	-	26	9793	c.9665C>T	c.(9664-9666)TCC>TTC	p.S3222F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3222	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCATTATAGGATTTGGTGAC	0.368													250	368					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230373	21230373	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21230373G>A	uc002red.2	-	26	9495	c.9367C>T	c.(9367-9369)CTG>TTG	p.L3123L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3123					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAGAAATCCAGATTTGCTTCT	0.368													627	198					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230953	21230953	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21230953C>T	uc002red.2	-	26	8915	c.8787G>A	c.(8785-8787)TGG>TGA	p.W2929*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2929					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGGCCCATTTCCATGACCCTT	0.478													158	751					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231812	21231812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21231812G>A	uc002red.2	-	26	8056	c.7928C>T	c.(7927-7929)TCC>TTC	p.S2643F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2643					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGAAAACCTGGATGGGATTTT	0.358													124	589					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21233506	21233506	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21233506T>C	uc002red.2	-	26	6362	c.6234A>G	c.(6232-6234)CAA>CAG	p.Q2078Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2078	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAAAATATTCTTGCAAGGTCT	0.343													693	207					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21260958	21260958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:21260958C>T	uc002red.2	-	5	537	c.409G>A	c.(409-411)GAA>AAA	p.E137K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	137	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCTTCCCTTCTGGAATGGCC	0.512													264	318					0	0	1	0	0
ITSN2	50618	broad.mit.edu	37	2	24523000	24523000	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:24523000C>T	uc002rfe.2	-	12	1380	c.1122G>A	c.(1120-1122)GGG>GGA	p.G374G	ITSN2_uc002rff.2_Silent_p.G374G|ITSN2_uc002rfg.2_Silent_p.G374G|ITSN2_uc010eyd.2_Silent_p.G399G	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	374	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTCCATGTTCCCTCGCTCAT	0.473													91	151					0	0	1	0	0
KIF3C	3797	broad.mit.edu	37	2	26151895	26151895	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:26151895G>A	uc002rgu.2	-	8	2991	c.2334C>T	c.(2332-2334)TCC>TCT	p.S778S	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.S776S	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	778	Globular (Potential).				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGAGGCCAGGGAGGCATGTG	0.607													109	33					0	0	1	0	0
HADHA	3030	broad.mit.edu	37	2	26461815	26461815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:26461815G>A	uc002rgy.2	-	3	297	c.167C>T	c.(166-168)TCT>TTT	p.S56F	HADHA_uc010yks.1_Missense_Mutation_p.L14F|HADHA_uc010ykt.1_Missense_Mutation_p.L14F	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	56					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	TGAATTGGGAGAGTTAATTCG	0.343													15	108					0	0	1	0	0
CENPA	1058	broad.mit.edu	37	2	27015690	27015690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:27015690G>A	uc002rhr.2	+	3	460	c.277G>A	c.(277-279)GCC>ACC	p.A93T	CENPA_uc002rht.2_RNA|CENPA_uc002rhs.2_Intron	NM_001809	NP_001800	P49450	CENPA_HUMAN	centromere protein A isoform a	93	H3-like.|CATD.				CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCCTATTGGCCCTACAAGA	0.517													14	75					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27700155	27700155	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:27700155G>A	uc002rku.2	-	13	1305	c.1254C>T	c.(1252-1254)ACC>ACT	p.T418T	IFT172_uc002rkw.2_Silent_p.T418T|IFT172_uc010yls.1_Silent_p.T397T|IFT172_uc010ezc.2_Silent_p.T418T|IFT172_uc002rkv.2_Silent_p.T392T	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	418					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATTCCACCAGGGTTAGCTCTC	0.463													30	214					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27804879	27804879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:27804879C>T	uc002rkz.3	+	1	5491	c.5440C>T	c.(5440-5442)CGT>TGT	p.R1814C	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1814	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					GGAGAGGAGCCGTCACAGTCT	0.532													53	121					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28852029	28852029	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:28852029G>A	uc002rmb.1	+	53	3795	c.3795G>A	c.(3793-3795)GGG>GGA	p.G1265G	PLB1_uc010ezj.1_Silent_p.G1254G|PLB1_uc002rme.1_Silent_p.G230G|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1265	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GCCAAGGCGGGAAATGTGCCA	0.617													8	85					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295029	29295029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:29295029C>T	uc002rmt.1	-	1	2099	c.2099G>A	c.(2098-2100)GGG>GAG	p.G700E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	700					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TGGAAGCTTCCCAGCTTTGCC	0.517													14	134					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29497982	29497982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:29497982G>A	uc002rmy.2	-	11	2931	c.2024C>T	c.(2023-2025)CCC>CTC	p.P675L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	675	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GTCAAAGATGGGGGTCTGTCT	0.463			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				100	22					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30975938	30975938	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:30975938C>T	uc002rnn.2	-	10	1244	c.1068G>A	c.(1066-1068)GTG>GTA	p.V356V	CAPN13_uc002rnp.1_Silent_p.V356V	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	356					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TTCCTAGAATCACTTGCTTCC	0.493													59	388					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30980933	30980933	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:30980933C>T	uc002rnn.2	-	8	1021	c.845G>A	c.(844-846)TGG>TAG	p.W282*	CAPN13_uc002rnp.1_Nonsense_Mutation_p.W282*	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	282	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GCGCCCTCTCCATTCGGCCTC	0.552													4	31					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	31010144	31010144	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31010144G>A	uc002rnn.2	-	2	224	c.48C>T	c.(46-48)TTC>TTT	p.F16F	CAPN13_uc002rnp.1_Silent_p.F16F	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	16					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					CCTGGTCTTTGAACTTGATGA	0.507													25	13					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31133833	31133833	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31133833C>T	uc002rnr.2	-	15	2212	c.1593G>A	c.(1591-1593)AAG>AAA	p.K531K	GALNT14_uc002rnq.2_Silent_p.K511K|GALNT14_uc002rns.2_Silent_p.K536K|GALNT14_uc010ymr.1_Silent_p.K496K	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	531	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CGACGATTTCCTTGCCGTTCT	0.552													143	35					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31135100	31135100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31135100C>T	uc002rnr.2	-	14	2108	c.1489G>A	c.(1489-1491)GAT>AAT	p.D497N	GALNT14_uc002rnq.2_Missense_Mutation_p.D477N|GALNT14_uc002rns.2_Missense_Mutation_p.D502N|GALNT14_uc010ymr.1_Missense_Mutation_p.D462N	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	497	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TGTCGGTCATCTCCATTCTTG	0.542													21	163					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31165103	31165103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31165103C>T	uc002rnr.2	-	9	1514	c.895G>A	c.(895-897)GAT>AAT	p.D299N	GALNT14_uc002rnq.2_Missense_Mutation_p.D279N|GALNT14_uc002rns.2_Missense_Mutation_p.D304N|GALNT14_uc010ymr.1_Missense_Mutation_p.D264N|GALNT14_uc010ezo.1_Missense_Mutation_p.D266N|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	299	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					ATGTCCATATCATATTTCCCC	0.512													110	40					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31215852	31215852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31215852C>T	uc002rnr.2	-	2	770	c.151G>A	c.(151-153)GAC>AAC	p.D51N	GALNT14_uc002rnq.2_Missense_Mutation_p.D31N|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Missense_Mutation_p.D16N|GALNT14_uc010ezo.1_Missense_Mutation_p.D51N|GALNT14_uc010ezp.1_Missense_Mutation_p.D22N	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	51	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TCCCACAGGTCGTCCCAGTCA	0.577													9	50					0	0	1	0	0
EHD3	30845	broad.mit.edu	37	2	31483546	31483546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31483546G>A	uc002rnu.2	+	4	1281	c.673G>A	c.(673-675)GAG>AAG	p.E225K	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	225	Potential.				blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					TGACCAGATCGAGACGCAGCA	0.552													27	64					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31587077	31587077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31587077G>A	uc002rnv.1	-	24	2657	c.2578C>T	c.(2578-2580)CTT>TTT	p.L860F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	860					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TCCACCTCAAGAGCCACAACT	0.542													19	180					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31595132	31595132	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31595132G>A	uc002rnv.1	-	17	1897	c.1818C>T	c.(1816-1818)CTC>CTT	p.L606L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	606					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGACCAGCCGGAGAGACAGCT	0.652													45	286					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31609403	31609403	+	Missense_Mutation	SNP	G	A	A	rs147533056	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31609403G>A	uc002rnv.1	-	9	749	c.670C>T	c.(670-672)CGG>TGG	p.R224W		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	224					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGCTGCTTCCGAGGAGTGTCT	0.507													15	118					0	0	1	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754406	31754406	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:31754406G>A	uc002rnw.1	-	5	740	c.669C>T	c.(667-669)TTC>TTT	p.F223F		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	223	Helical; (Potential).				androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	GCAGCCCAAGGAAACAAAGTG	0.473													11	36					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32475771	32475771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:32475771G>A	uc002roi.2	-	4	1408	c.1162C>T	c.(1162-1164)CGG>TGG	p.R388W	NLRC4_uc002roj.1_Missense_Mutation_p.R388W|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	388	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TCCAGGCTCCGAATGAAGTCA	0.473													18	76					0	0	1	0	0
YIPF4	84272	broad.mit.edu	37	2	32526553	32526553	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:32526553A>T	uc002rok.2	+	5	853	c.586A>T	c.(586-588)ACA>TCA	p.T196S		NM_032312	NP_115688	Q9BSR8	YIPF4_HUMAN	Yip1 domain family, member 4	196	Helical; (Potential).					endoplasmic reticulum|integral to membrane	protein binding				0	Acute lymphoblastic leukemia(172;0.155)					AGTGGTGTCTACACTTATAAA	0.343													11	93					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33360016	33360016	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:33360016A>T	uc002ros.2	+	5	1190	c.1190A>T	c.(1189-1191)AAC>ATC	p.N397I	LTBP1_uc002rot.2_Missense_Mutation_p.N71I|LTBP1_uc002rou.2_Missense_Mutation_p.N71I|LTBP1_uc002rov.2_Missense_Mutation_p.N71I|LTBP1_uc010ymz.1_Missense_Mutation_p.N71I|LTBP1_uc010yna.1_Missense_Mutation_p.N71I	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	397					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				ACGGCCACGAACTTCCGAGTG	0.532													4	20					0	0	1	0	0
RASGRP3	25780	broad.mit.edu	37	2	33745625	33745625	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:33745625G>A	uc002rox.2	+	7	869	c.242G>A	c.(241-243)TGG>TAG	p.W81*	RASGRP3_uc010ync.1_Nonsense_Mutation_p.W81*|RASGRP3_uc002roy.2_Nonsense_Mutation_p.W81*	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	81	N-terminal Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTCAGGTACTGGATTCTGAAG	0.378													103	336					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37036078	37036078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:37036078G>A	uc002rpl.2	+	15	2074	c.1853G>A	c.(1852-1854)GGG>GAG	p.G618E	VIT_uc002rpm.2_Missense_Mutation_p.G596E|VIT_uc010ezv.2_Missense_Mutation_p.G574E|VIT_uc010ezw.2_Missense_Mutation_p.G575E	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	603	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				ATCACCGACGGGAGGTCCTAC	0.602													10	114					0	0	1	0	0
GALM	130589	broad.mit.edu	37	2	38958934	38958934	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:38958934C>T	uc002rqy.2	+	6	1086	c.834C>T	c.(832-834)GTC>GTT	p.V278V		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	278					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				AGCCCGGGGTCCAGTTTTACA	0.527													19	133					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39082213	39082213	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:39082213A>G	uc002rrf.2	-	8	1990	c.1891T>C	c.(1891-1893)TTA>CTA	p.L631L	DHX57_uc002rrd.3_5'UTR|DHX57_uc002rre.2_Silent_p.L64L|DHX57_uc002rrg.2_Silent_p.L631L	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	631	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ACACTTTCTAACCGAATCTGG	0.448													63	456					0	0	1	0	0
MAP4K3	8491	broad.mit.edu	37	2	39499509	39499509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:39499509G>A	uc002rro.2	-	26	1979	c.1888C>T	c.(1888-1890)CCA>TCA	p.P630S	MAP4K3_uc002rrp.2_Missense_Mutation_p.P609S|MAP4K3_uc010yns.1_Missense_Mutation_p.P183S	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	630	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				AAAAGCCCTGGTAAATTATGG	0.333													11	52					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927645	43927645	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:43927645C>T	uc010yny.1	+	8	1631	c.1548C>T	c.(1546-1548)TCC>TCT	p.S516S	PLEKHH2_uc002rte.3_Silent_p.S516S|PLEKHH2_uc002rtf.3_Silent_p.S515S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	516						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTATGACTCCTTGGACTCTC	0.443													507	156					0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44052093	44052093	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:44052093A>C	uc002rtn.2	-	7	979	c.839T>G	c.(838-840)ATG>AGG	p.M280R	ABCG5_uc002rtm.2_Intron|ABCG5_uc002rto.2_Intron|ABCG5_uc002rtp.2_Intron	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	280	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GAAATCAAGCATTTCCGCTGG	0.433													217	69					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44099245	44099245	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:44099245G>A	uc002rtq.2	+	7	1185	c.1095G>A	c.(1093-1095)ACG>ACA	p.T365T	ABCG8_uc010yoa.1_Silent_p.T365T	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	365	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AAGCAGAGACGAAGGATCTTG	0.552													121	605					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44102363	44102363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:44102363C>T	uc002rtq.2	+	11	1657	c.1567C>T	c.(1567-1569)CCA>TCA	p.P523S	ABCG8_uc010yoa.1_Missense_Mutation_p.P522S	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	523	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CAACCTGAGGCCAGGCCTCCA	0.622													112	701					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46574149	46574149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:46574149C>T	uc002ruv.2	+	2	652	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	55	Helix-loop-helix motif.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			GACAAGGCCTCCATCATGCGA	0.622													79	89					0	0	1	0	0
FOXN2	3344	broad.mit.edu	37	2	48602520	48602520	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:48602520A>G	uc002rwh.1	+	7	1549	c.1234A>G	c.(1234-1236)ACA>GCA	p.T412A		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	412					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			TGGAATTCGTACATGTTTAGG	0.398													7	40					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48896993	48896993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:48896993G>A	uc010yol.1	+	6	3129	c.3082G>A	c.(3082-3084)GAA>AAA	p.E1028K	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E1075K|GTF2A1L_uc002rws.1_Missense_Mutation_p.E371K|GTF2A1L_uc010yom.1_Missense_Mutation_p.E337K|GTF2A1L_uc002rwt.2_Missense_Mutation_p.E371K	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1028					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGATGAGAATGAATTTCTAGG	0.383													15	97					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49190511	49190511	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:49190511G>A	uc002rww.2	-	10	1523	c.1449C>T	c.(1447-1449)CTC>CTT	p.L483L	FSHR_uc002rwx.2_Silent_p.L421L|FSHR_uc010fbn.2_Silent_p.L457L	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	483	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CAGCATGGCGGAGCTGCACCT	0.522									Gonadal_Dysgenesis_46_XX				31	11					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49381436	49381436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:49381436G>A	uc002rww.2	-	1	195	c.121C>T	c.(121-123)CCT>TCT	p.P41S	FSHR_uc002rwx.2_Missense_Mutation_p.P41S|FSHR_uc010fbn.2_Missense_Mutation_p.P41S|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	41	LRRNT.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	AGGTCAGAAGGAATCTCTGTC	0.478									Gonadal_Dysgenesis_46_XX				38	13					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50699580	50699580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:50699580C>T	uc010fbq.2	-	16	4697	c.3220G>A	c.(3220-3222)GAA>AAA	p.E1074K	NRXN1_uc002rxb.3_Missense_Mutation_p.E706K|NRXN1_uc002rxe.3_Missense_Mutation_p.E1034K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	223	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTGTATGTTTCTTTAGCTACT	0.403													14	56					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54148047	54148047	+	Silent	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:54148047A>C	uc002rxp.2	-	18	2297	c.2241T>G	c.(2239-2241)CCT>CCG	p.P747P	PSME4_uc010yop.1_Silent_p.P633P|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Silent_p.P122P|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	747					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AGTATTCAGAAGGAGGCTTGT	0.378													28	162					0	0	1	0	0
MTIF2	4528	broad.mit.edu	37	2	55489532	55489532	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:55489532G>T	uc002ryn.2	-	6	988	c.251C>A	c.(250-252)TCA>TAA	p.S84*	MTIF2_uc010yox.1_5'UTR|MTIF2_uc002ryo.2_Nonsense_Mutation_p.S84*	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	84					regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						AGATTTTGTTGAAGATAACTG	0.318													22	142					3.85864e-22	3.90749e-22	1	1	0
BCL11A	53335	broad.mit.edu	37	2	60688989	60688989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:60688989G>A	uc002sae.1	-	4	1286	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L	BCL11A_uc002sab.2_Missense_Mutation_p.P353L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Missense_Mutation_p.P319L|BCL11A_uc002sad.1_Missense_Mutation_p.P201L|BCL11A_uc002saf.1_Missense_Mutation_p.P319L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	353	Pro-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CGCCAGGAAGGGCGGCTTGCT	0.652			T	IGH@	B-CLL								86	574					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60773370	60773370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:60773370C>T	uc002sae.1	-	2	349	c.121G>A	c.(121-123)GGG>AGG	p.G41R	BCL11A_uc002sab.2_Missense_Mutation_p.G41R|BCL11A_uc002sac.2_Missense_Mutation_p.G41R|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Missense_Mutation_p.G41R|BCL11A_uc002saf.1_Missense_Mutation_p.G41R|BCL11A_uc010fcg.2_Missense_Mutation_p.G41R	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	41	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TCATGATCCCCTTCTGGAGCT	0.493			T	IGH@	B-CLL								93	767					0	0	1	0	0
PAPOLG	64895	broad.mit.edu	37	2	61009067	61009067	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:61009067C>T	uc002sai.2	+	11	1185	c.954C>T	c.(952-954)GCC>GCT	p.A318A	PAPOLG_uc002saj.2_Silent_p.A7A|PAPOLG_uc002sak.2_5'UTR|PAPOLG_uc010fch.2_Silent_p.A7A	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	318					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			TCACCCCTGCCTACCCACAAC	0.393													22	99					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61610405	61610405	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:61610405T>C	uc002sbe.2	-	6	842	c.820A>G	c.(820-822)AGG>GGG	p.R274G		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	274					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TAAACTTACCTAATAACATAG	0.269													11	65					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63175538	63175538	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:63175538C>T	uc002sby.2	+	14	2144	c.1662C>T	c.(1660-1662)GTC>GTT	p.V554V	EHBP1_uc010fcp.2_Silent_p.V519V|EHBP1_uc002sbz.2_Silent_p.V519V|EHBP1_uc002scb.2_Silent_p.V519V	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	554						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AACTAAATGTCGTTCAGATAG	0.343									Hereditary_Prostate_Cancer				5	63					0	0	1	0	0
VPS54	51542	broad.mit.edu	37	2	64140414	64140414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:64140414G>A	uc002scq.2	-	18	2528	c.2365C>T	c.(2365-2367)CTT>TTT	p.L789F	VPS54_uc002scp.2_Missense_Mutation_p.L777F|VPS54_uc002scn.2_5'UTR|VPS54_uc002sco.2_Missense_Mutation_p.L274F|VPS54_uc010fct.2_Missense_Mutation_p.L636F	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	789					protein transport|retrograde transport, endosome to Golgi						0						CCAGCTCCAAGAACTAACTGG	0.353													5	39					0	0	1	0	0
PLEK	5341	broad.mit.edu	37	2	68607970	68607970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:68607970G>A	uc002sen.3	+	3	476	c.314G>A	c.(313-315)GGA>GAA	p.G105E	PLEK_uc010fde.2_Missense_Mutation_p.G105E	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	105					actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		TGCATTGAAGGAGGCCAGAAA	0.478													149	38					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69046310	69046310	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:69046310C>T	uc002seu.2	+	9	1420	c.1056C>T	c.(1054-1056)CTC>CTT	p.L352L	ARHGAP25_uc010fdg.2_Silent_p.L353L|ARHGAP25_uc010yql.1_Silent_p.L313L|ARHGAP25_uc002sev.2_Silent_p.L346L|ARHGAP25_uc002sew.2_Silent_p.L345L|ARHGAP25_uc002sex.2_Silent_p.L346L|ARHGAP25_uc002sey.2_Silent_p.L79L	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	352	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						ATGAAGTCCTCTTCCCCAAGT	0.507													53	293					0	0	1	0	0
ANXA4	307	broad.mit.edu	37	2	70037755	70037755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:70037755C>T	uc002sfr.3	+	7	654	c.427C>T	c.(427-429)CGC>TGC	p.R143C	ANXA4_uc010yqn.1_RNA|ANXA4_uc002sfs.3_Missense_Mutation_p.R121C|ANXA4_uc010yqo.1_Missense_Mutation_p.R59C	NM_001153	NP_001144	P09525	ANXA4_HUMAN	annexin IV	141	Annexin 2.				anti-apoptosis|signal transduction	cytoplasm	calcium ion binding|calcium-dependent phospholipid binding|phospholipase inhibitor activity				0						AGATGACATTCGCTCTGACAC	0.488													12	82					0	0	1	0	0
CLEC4F	165530	broad.mit.edu	37	2	71039588	71039588	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:71039588C>T	uc002shf.2	-	5	1607	c.1530G>A	c.(1528-1530)AAG>AAA	p.K510K	CLEC4F_uc010yqv.1_Silent_p.K510K	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	510	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CCTGCTCCTCCTTGGAGGCCA	0.517													14	95					0	0	1	0	0
ZNF638	27332	broad.mit.edu	37	2	71576895	71576895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:71576895C>T	uc002shx.2	+	2	1130	c.811C>T	c.(811-813)CAA>TAA	p.Q271*	ZNF638_uc010fec.2_Nonsense_Mutation_p.Q377*|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Nonsense_Mutation_p.Q271*|ZNF638_uc002shy.2_Nonsense_Mutation_p.Q271*|ZNF638_uc002shz.2_Nonsense_Mutation_p.Q271*|ZNF638_uc002sia.2_Nonsense_Mutation_p.Q271*|ZNF638_uc002sib.1_Nonsense_Mutation_p.Q271*	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	271					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CGTATTTCGCCAAATGGACTT	0.433													24	138					0	0	1	0	0
DQX1	165545	broad.mit.edu	37	2	74750657	74750657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:74750657G>A	uc010yrw.1	-	5	989	c.824C>T	c.(823-825)TCC>TTC	p.S275F	DQX1_uc002smc.2_5'UTR	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	275	Helicase C-terminal.					nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						ACAGCACAGGGAAATTTCCTG	0.393													28	69					0	0	1	0	0
SEMA4F	10505	broad.mit.edu	37	2	74884997	74884997	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:74884997T>C	uc002sna.1	+	4	486	c.375T>C	c.(373-375)TTT>TTC	p.F125F	SEMA4F_uc010ysb.1_Intron|SEMA4F_uc010ffq.1_Intron|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_Intron|SEMA4F_uc002snc.1_Intron	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	125	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTCACAATTTTGTCCAGATTC	0.517													100	35					0	0	1	0	0
SEMA4F	10505	broad.mit.edu	37	2	74902716	74902716	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:74902716C>T	uc002sna.1	+	11	1548	c.1437C>T	c.(1435-1437)GCC>GCT	p.A479A	SEMA4F_uc010ffq.1_Silent_p.A446A|SEMA4F_uc010ffr.1_Silent_p.A91A|SEMA4F_uc002snb.1_Silent_p.A91A|SEMA4F_uc002snc.1_Silent_p.A324A	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	479	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AAGATCTGGCCTTATTCCCAG	0.488													15	104					0	0	1	0	0
SEMA4F	10505	broad.mit.edu	37	2	74907304	74907304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:74907304C>T	uc002sna.1	+	14	2392	c.2281C>T	c.(2281-2283)CCT>TCT	p.P761S	SEMA4F_uc010ffr.1_Missense_Mutation_p.P373S|SEMA4F_uc002snb.1_Missense_Mutation_p.P373S|SEMA4F_uc002snc.1_Missense_Mutation_p.P606S	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	761	Cytoplasmic (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AACTGGGGCTCCTCTAGCCAC	0.557													14	99					0	0	1	0	0
TACR1	6869	broad.mit.edu	37	2	75347738	75347738	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:75347738G>A	uc002sng.2	-	2	1131	c.546C>T	c.(544-546)ATC>ATT	p.I182I	TACR1_uc002snh.2_Silent_p.I182I	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	182	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	CTGGCCATTCGATCATGCACA	0.547													27	107					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77745540	77745540	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:77745540A>C	uc002snr.2	-	3	1870	c.1455T>G	c.(1453-1455)TAT>TAG	p.Y485*	LRRTM4_uc002snq.2_Nonsense_Mutation_p.Y485*|LRRTM4_uc002sns.2_Nonsense_Mutation_p.Y485*|LRRTM4_uc002snt.2_Nonsense_Mutation_p.Y486*	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	485	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TGTAGTCCACATAATACTCCT	0.463													4	19					0	0	1	0	0
REG1B	5968	broad.mit.edu	37	2	79313631	79313631	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:79313631C>T	uc002sny.2	-	4	296	c.184_splice	c.e4-1	p.L62_splice	REG1B_uc010ffv.1_Intron|REG1B_uc010ffw.2_3'UTR	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor						cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						GGCAATAGAGCTGTTGGAGAA	0.498													35	59					0	0	1	0	0
REG1B	5968	broad.mit.edu	37	2	79314027	79314027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:79314027G>A	uc002sny.2	-	3	206	c.94C>T	c.(94-96)CCC>TCC	p.P32S	REG1B_uc010ffv.1_Missense_Mutation_p.P32S|REG1B_uc010ffw.2_Missense_Mutation_p.P32S	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	32					cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						CTGATTCGGGGATTAGGCAGC	0.493													68	98					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80085292	80085292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:80085292C>T	uc010ysh.1	+	3	457	c.452C>T	c.(451-453)TCC>TTC	p.S151F	CTNNA2_uc010yse.1_Missense_Mutation_p.S151F|CTNNA2_uc010ysf.1_Missense_Mutation_p.S151F|CTNNA2_uc010ysg.1_Missense_Mutation_p.S151F	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	151					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AGACTTTTATCCCATCTGAAA	0.483													17	22					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80782952	80782952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:80782952G>A	uc010ysh.1	+	11	1680	c.1675G>A	c.(1675-1677)GAG>AAG	p.E559K	CTNNA2_uc010yse.1_Missense_Mutation_p.E559K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E559K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E559K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E191K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	559					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TGCTGAGATGGAGAACTATGA	0.507													45	24					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85049122	85049122	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:85049122G>A	uc010ysl.1	-	7	1526	c.1437C>T	c.(1435-1437)GCC>GCT	p.A479A	C2orf89_uc002sou.3_Silent_p.A430A	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	479	Helical; (Potential).					integral to membrane				ovary(1)	1						AGGCACTGCTGGCCACCATCT	0.607													6	7					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85051084	85051084	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:85051084C>A	uc010ysl.1	-	6	1416	c.1327G>T	c.(1327-1329)GAG>TAG	p.E443*	C2orf89_uc002sou.3_Nonsense_Mutation_p.E394*	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	443	Extracellular (Potential).					integral to membrane				ovary(1)	1						GACCTCTCCTCCAGGCGGACC	0.647													6	13					0.0293803	0.0293968	1	1	0
SFTPB	6439	broad.mit.edu	37	2	85892729	85892729	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:85892729C>T	uc002sqh.2	-	5	588	c.582G>A	c.(580-582)CAG>CAA	p.Q194Q	SFTPB_uc002sqi.2_Silent_p.Q206Q|SFTPB_uc002sqj.2_Silent_p.Q194Q	NM_198843	NP_942140	P07988	PSPB_HUMAN	surfactant, pulmonary-associated protein B	194					organ morphogenesis|respiratory gaseous exchange|sphingolipid metabolic process	extracellular space|lysosome				ovary(1)|central_nervous_system(1)	2						CCTCCCTCACCTGTGTGTGAG	0.677													16	42					0	0	1	0	0
REEP1	65055	broad.mit.edu	37	2	86479188	86479188	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:86479188G>A	uc002srh.3	-	5	453	c.309C>T	c.(307-309)ATC>ATT	p.I103I	REEP1_uc010ytg.1_Silent_p.I82I|REEP1_uc010yth.1_Silent_p.I76I|REEP1_uc010yti.1_Intron	NM_022912	NP_075063	Q9H902	REEP1_HUMAN	receptor accessory protein 1 isoform 2	103					cell death|protein insertion into membrane	integral to membrane|mitochondrial membrane	olfactory receptor binding				0						GACAATCATCGATTTCCTGTC	0.522													42	37					0	0	1	0	0
SMYD1	150572	broad.mit.edu	37	2	88390635	88390635	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:88390635C>T	uc002ssr.2	+	4	635	c.633C>T	c.(631-633)AAC>AAT	p.N211N	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_5'UTR	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	211	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GTTGGCCCAACTGTACTGTCA	0.507													33	64					0	0	1	0	0
FABP1	2168	broad.mit.edu	37	2	88425751	88425751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:88425751C>T	uc002sst.1	-	2	226	c.184G>A	c.(184-186)GAA>AAA	p.E62K	FABP1_uc002ssu.2_Missense_Mutation_p.E62K	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	62					organ morphogenesis						0						ACCGTGAATTCGTTTTGGATC	0.517													53	132					0	0	1	0	0
FLJ40330	645784	broad.mit.edu	37	2	89082383	89082383	+	RNA	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:89082383A>G	uc010fhf.2	+	4		c.411A>G			FLJ40330_uc010fhg.2_RNA|FLJ40330_uc010fhh.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J1630 (from clone DKFZp434J1630).												0						GCAAGTGACGAGAAAGATTCT	0.338													5	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89399650	89399650	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:89399650G>A	uc010ytr.1	-	46		c.4795C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TCTGGCACCTGAGATTGGAAA	0.458													25	81					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90007963	90007963	+	RNA	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:90007963A>T	uc010fhm.2	+	8		c.1136A>T								Parts of antibodies, mostly variable regions.																		ATTAGCAATTATTTAGCCTGG	0.522													16	31					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847389	95847389	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:95847389C>T	uc002suf.2	+	6	1275	c.813C>T	c.(811-813)TCC>TCT	p.S271S	ZNF2_uc002sug.2_Silent_p.S229S|ZNF2_uc010yue.1_Silent_p.S234S|ZNF2_uc010fhs.2_Silent_p.S192S	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	271	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		ACCGTTCATCCCTTACTCGAC	0.458													38	57					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847747	95847747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:95847747C>T	uc002suf.2	+	6	1633	c.1171C>T	c.(1171-1173)CAC>TAC	p.H391Y	ZNF2_uc002sug.2_Missense_Mutation_p.H349Y|ZNF2_uc010yue.1_Missense_Mutation_p.H354Y|ZNF2_uc010fhs.2_Missense_Mutation_p.H312Y	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	391	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		TCAGCGTGTCCACACGGGAGA	0.507													19	60					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847805	95847805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:95847805C>T	uc002suf.2	+	6	1691	c.1229C>T	c.(1228-1230)TCT>TTT	p.S410F	ZNF2_uc002sug.2_Missense_Mutation_p.S368F|ZNF2_uc010yue.1_Missense_Mutation_p.S373F|ZNF2_uc010fhs.2_Missense_Mutation_p.S331F	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	410	C2H2-type 9; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		AGTTCAAAATCTTCTGTTATT	0.488													9	47					0	0	1	0	0
SNRNP200	23020	broad.mit.edu	37	2	96956432	96956432	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:96956432T>C	uc002svu.2	-	19	2629	c.2543A>G	c.(2542-2544)GAC>GGC	p.D848G	SNRNP200_uc002svw.1_5'Flank	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	848	Helicase C-terminal 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CTGCAGAATGTCCAGTGCTCC	0.507													74	86					0	0	1	0	0
KIAA1310	55683	broad.mit.edu	37	2	97276607	97276607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:97276607G>A	uc002swn.3	-	11	1321	c.1175C>T	c.(1174-1176)CCC>CTC	p.P392L	KIAA1310_uc002swh.3_Missense_Mutation_p.P280L|KIAA1310_uc002swi.3_Missense_Mutation_p.P293L|KIAA1310_uc002swj.3_RNA|KIAA1310_uc002swk.3_Missense_Mutation_p.P305L|KIAA1310_uc010fhz.2_Missense_Mutation_p.P186L|KIAA1310_uc002swl.3_Missense_Mutation_p.P293L|KIAA1310_uc002swm.3_RNA|KIAA1310_uc010yur.1_Missense_Mutation_p.P186L|KIAA1310_uc002swp.1_Missense_Mutation_p.P293L|KIAA1310_uc002swq.1_Missense_Mutation_p.P164L|KIAA1310_uc010fhy.1_Missense_Mutation_p.P293L	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	392											0						ATCCAAGAGGGGATCATCTAC	0.458													28	130					0	0	1	0	0
SEMA4C	54910	broad.mit.edu	37	2	97527320	97527320	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:97527320C>T	uc002sxh.3	-	14	1828	c.1668G>A	c.(1666-1668)AAG>AAA	p.K556K	SEMA4C_uc002sxf.3_Silent_p.K56K|SEMA4C_uc002sxe.2_Silent_p.K56K|SEMA4C_uc002sxg.3_Silent_p.K609K	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	556	Extracellular (Potential).|Ig-like C2-type.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						GCTCACCTTTCTTACTGCCAC	0.547													45	80					0	0	1	0	0
ACTR1B	10120	broad.mit.edu	37	2	98275434	98275434	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:98275434G>A	uc002syb.2	-	5	556	c.348C>T	c.(346-348)AAC>AAT	p.N116N		NM_005735	NP_005726	P42025	ACTY_HUMAN	ARP1 actin-related protein 1 homolog B,	116						centrosome|dynactin complex	ATP binding|protein binding			skin(1)	1						TCTTACTCGGGTTGAGCGGGG	0.587													78	96					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98994205	98994205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:98994205G>A	uc002syt.2	+	3	574	c.157G>A	c.(157-159)GAG>AAG	p.E53K	CNGA3_uc002syu.2_Missense_Mutation_p.E53K|CNGA3_uc010fij.2_Missense_Mutation_p.E2K	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	53					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GATCGCCATGGAGACCAGAGG	0.592													5	25					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99448966	99448966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:99448966G>A	uc002szf.1	-	5	679	c.385C>T	c.(385-387)CAG>TAG	p.Q129*		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	129											0						ACATTACACTGTATTTTTAAC	0.473													31	13					0	0	1	0	0
TXNDC9	10190	broad.mit.edu	37	2	99936182	99936182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:99936182C>T	uc002szz.2	-	5	835	c.644G>A	c.(643-645)CGA>CAA	p.R215Q	MRPL30_uc002szl.1_Intron|TXNDC9_uc010yvp.1_Intron	NM_005783	NP_005774	O14530	TXND9_HUMAN	thioredoxin domain containing 9	215					cell redox homeostasis		protein binding				0						TTTCTTTCCTCGGATAGTTTT	0.289													11	38					0	0	1	0	0
REV1	51455	broad.mit.edu	37	2	100058899	100058899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:100058899G>A	uc002tad.2	-	5	595	c.383C>T	c.(382-384)CCA>CTA	p.P128L	REV1_uc002tac.2_Missense_Mutation_p.P128L|REV1_uc002tae.1_Missense_Mutation_p.P107L	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	128	BRCT.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						CAGCTGATATGGAATGTAGGA	0.443								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					30	22					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100210308	100210308	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:100210308G>A	uc002tag.2	-	14	2051	c.1815C>T	c.(1813-1815)CCC>CCT	p.P605P	AFF3_uc002taf.2_Silent_p.P630P|AFF3_uc010fiq.1_Silent_p.P605P|AFF3_uc010yvr.1_Silent_p.P758P|AFF3_uc002tah.1_Silent_p.P630P	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	605					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CGGGCTCCTCGGGCCGGTGGC	0.751													4	12					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102968026	102968026	+	Missense_Mutation	SNP	G	A	A	rs150294315		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:102968026G>A	uc002tbu.1	+	11	1587	c.1316G>A	c.(1315-1317)CGA>CAA	p.R439Q	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	439	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ACCAACATACGAAAGAGCAGG	0.438													18	8					0	0	1	0	0
GPR45	11250	broad.mit.edu	37	2	105859317	105859317	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:105859317C>T	uc002tco.1	+	1	1118	c.1002C>T	c.(1000-1002)GCC>GCT	p.A334A		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	334	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						TCCGCGAGGCCTGCATAGAGT	0.542													14	60					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105883952	105883952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:105883952G>A	uc002tcq.2	-	12	2555	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.P593L|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.P824L|uc002tcp.2_5'Flank	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	824					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CTCACAAAAGGGATTTTGGCA	0.473													21	53					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107041049	107041049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:107041049C>T	uc010ywi.1	-	20	3431	c.3374G>A	c.(3373-3375)GGA>GAA	p.G1125E		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1125	RanBD1 1.				intracellular transport		binding			ovary(1)	1						TCTATCTGATCCAGAGAGGGG	0.433													56	134					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423353	107423353	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:107423353G>A	uc002tdq.2	-	6	1490	c.1371C>T	c.(1369-1371)ATC>ATT	p.I457I	ST6GAL2_uc002tdr.2_Silent_p.I457I	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	457	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCACGGATGGGATATATTCAT	0.507													10	21					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459508	107459508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:107459508G>A	uc002tdq.2	-	2	1045	c.926C>T	c.(925-927)TCC>TTC	p.S309F	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S309F|ST6GAL2_uc002tds.3_Missense_Mutation_p.S309F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	309	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTCGCCCAAGGAAGAGTTGAG	0.682													8	5					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488514	108488514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:108488514G>A	uc010ywk.1	+	20	4136	c.4054G>A	c.(4054-4056)GAA>AAA	p.E1352K	RGPD4_uc002tdu.2_Missense_Mutation_p.E539K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1352	RanBD1 2.				intracellular transport		binding			skin(2)	2						CAGTGGTGAGGAAAATGAAAA	0.368													59	176					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108489194	108489194	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:108489194G>A	uc010ywk.1	+	20	4816	c.4734G>A	c.(4732-4734)TTG>TTA	p.L1578L	RGPD4_uc002tdu.2_Silent_p.L765L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1578					intracellular transport		binding			skin(2)	2						ATGCATCTTTGAAAAGTAACA	0.353													70	197					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	109002725	109002725	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:109002725C>T	uc002tea.1	+	6	1066	c.693C>T	c.(691-693)GTC>GTT	p.V231V	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Silent_p.V156V	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	231	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						ATAAAATTGTCCATTACACTT	0.358													8	20					0	0	1	0	0
GCC2	9648	broad.mit.edu	37	2	109092241	109092241	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:109092241C>T	uc002tec.2	+	9	3149	c.2995C>T	c.(2995-2997)CGA>TGA	p.R999*	GCC2_uc002ted.2_Nonsense_Mutation_p.R898*	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	999	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TGAATCTCTTCGATCAGAAAA	0.308													37	28					0	0	1	0	0
GCC2	9648	broad.mit.edu	37	2	109104204	109104204	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:109104204T>C	uc002tec.2	+	17	4134	c.3980T>C	c.(3979-3981)GTT>GCT	p.V1327A	GCC2_uc002ted.2_Missense_Mutation_p.V1226A	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1327	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						AAAGTCCGAGTTCATAATGTT	0.363													20	45					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109381019	109381019	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:109381019C>T	uc002tem.3	+	20	4150	c.4024C>T	c.(4024-4026)CTG>TTG	p.L1342L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1342					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TGCTGGAAACCTGAATTTTGA	0.388													18	24					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111556267	111556267	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:111556267C>T	uc002tgr.3	+	6	650	c.426C>T	c.(424-426)GTC>GTT	p.V142V	ACOXL_uc010fkc.2_Silent_p.V142V|ACOXL_uc010yxk.1_Silent_p.V142V	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	142					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						ATGCAGCTGTCTTTGCCCAGC	0.393													29	19					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111562928	111562928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:111562928C>T	uc002tgr.3	+	9	933	c.709C>T	c.(709-711)CCT>TCT	p.P237S	ACOXL_uc010fkc.2_Missense_Mutation_p.P237S|ACOXL_uc010yxk.1_Missense_Mutation_p.P237S	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	237					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AGCACTGACCCCTTCGAGATT	0.458													17	49					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113763639	113763640	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:113763639_113763640CC>TT	uc010yxr.1	+	2	99_100	c.99_100CC>TT	c.(97-102)GTCCCG>GTTTCG	p.P34S		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	34					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						TCATAGCAGTCCCGAGGAAGGA	0.51													10	22					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113764178	113764178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:113764178C>T	uc010yxr.1	+	3	128	c.128C>T	c.(127-129)ACT>ATT	p.T43I		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	43					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						TTCCCAGTCACTATTGCCTTA	0.498													70	151					0	0	1	0	0
IL1F10	84639	broad.mit.edu	37	2	113832744	113832744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:113832744G>A	uc002tiu.2	+	5	337	c.262G>A	c.(262-264)GAA>AAA	p.E88K	IL1F10_uc002tiv.2_Missense_Mutation_p.E88K|IL1F10_uc002tiw.2_Missense_Mutation_p.E80K	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	88						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						GAACATTGAGGAACTGTACAA	0.577													113	82					0	0	1	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													3	11					0	0	1	0	0
CCDC93	54520	broad.mit.edu	37	2	118753067	118753067	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:118753067G>A	uc002tlj.2	-	6	600	c.474C>T	c.(472-474)TTC>TTT	p.F158F	CCDC93_uc010fld.1_Silent_p.F158F	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	158										large_intestine(1)|ovary(1)	2						TTCTCTTTATGAAGTCATCAT	0.423													27	21					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119726773	119726773	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:119726773C>T	uc002tln.1	+	2	267	c.135C>T	c.(133-135)TCC>TCT	p.S45S	MARCO_uc010yyf.1_5'UTR	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	45	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TGAACTTCTCCCTAGCTGTGG	0.577													37	20					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119726782	119726782	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:119726782G>A	uc002tln.1	+	2	276	c.144G>A	c.(142-144)GTG>GTA	p.V48V	MARCO_uc010yyf.1_5'UTR	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	48	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CCCTAGCTGTGGTGGTCATCT	0.582													13	43					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121747145	121747145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:121747145G>A	uc010flp.2	+	13	3685	c.3655G>A	c.(3655-3657)GTA>ATA	p.V1219I	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.V891I|GLI2_uc002tmu.3_Missense_Mutation_p.V874I	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1219					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CATCCCCAGGGTAAACTACAT	0.657													4	9					0	0	1	0	0
MAP3K2	10746	broad.mit.edu	37	2	128079751	128079751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:128079751G>A	uc002toj.1	-	11	981	c.916C>T	c.(916-918)CAT>TAT	p.H306Y		NM_006609	NP_006600	Q9Y2U5	M3K2_HUMAN	mitogen-activated protein kinase kinase kinase	306					activation of JUN kinase activity|cellular response to mechanical stimulus	nucleus	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein kinase binding			lung(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0706)		CTTAAGGAATGATCAGTAGGA	0.423													16	12					0	0	1	0	0
IWS1	55677	broad.mit.edu	37	2	128262588	128262588	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:128262588G>A	uc002ton.2	-	3	1194	c.891C>T	c.(889-891)CCC>CCT	p.P297P	IWS1_uc010yzl.1_RNA|uc002too.1_5'Flank|IWS1_uc010fma.2_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	297	Glu-rich.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		CACTGACTCGGGGTTTGGGTA	0.532													43	123					0	0	1	0	0
IWS1	55677	broad.mit.edu	37	2	128262908	128262908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:128262908G>A	uc002ton.2	-	3	874	c.571C>T	c.(571-573)CCA>TCA	p.P191S	IWS1_uc010yzl.1_RNA|IWS1_uc010fma.2_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	191	Glu-rich.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		TGGTGCCTTGGGGGTTCCTCA	0.483													57	121					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128380870	128380870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:128380870G>A	uc002top.2	+	28	3714	c.3661G>A	c.(3661-3663)GAA>AAA	p.E1221K	MYO7B_uc002toq.1_Missense_Mutation_p.E74K|MYO7B_uc002tor.1_Missense_Mutation_p.E74K	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1221	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CACATCTCGGGAAATGTGCAT	0.607													6	17					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128775341	128775341	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:128775341G>A	uc002tpp.2	-	3	471	c.339C>T	c.(337-339)GTC>GTT	p.V113V	SAP130_uc002tpo.2_5'Flank|SAP130_uc010fmd.2_Silent_p.V113V|SAP130_uc002tpq.1_Silent_p.V87V	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	113					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TGGCTGATGCGACAGCATGGT	0.572													30	57					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132200660	132200660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:132200660C>T	uc002tst.2	-	1	1808	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TGCCAGGCTTCCACTGCCTGC	0.612													8	4					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290316	132290316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:132290316C>T	uc002tta.2	+	5	890	c.838C>T	c.(838-840)CGC>TGC	p.R280C	CCDC74A_uc002ttb.2_Missense_Mutation_p.R214C	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	280										skin(1)	1						AGTGCTCATCCGCGAGCTGTG	0.672													40	34					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543111	133543111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:133543111C>T	uc002ttp.2	-	14	1647	c.1273G>A	c.(1273-1275)GGT>AGT	p.G425S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	425							protein binding				0						TCTTTATAACCCCATTTGGTT	0.438													51	24					0	0	1	0	0
MGAT5	4249	broad.mit.edu	37	2	135095839	135095839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:135095839C>T	uc002ttv.1	+	6	800	c.655C>T	c.(655-657)CGT>TGT	p.R219C		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	219	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		GGCGGAAATTCGTACAGATTT	0.368													8	31					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135738420	135738420	+	Silent	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:135738420T>A	uc002tue.1	-	9	3922	c.3891A>T	c.(3889-3891)GCA>GCT	p.A1297A	YSK4_uc002tuf.1_Silent_p.A479A|YSK4_uc010fnc.1_Silent_p.A431A|YSK4_uc010fnd.1_Silent_p.A1184A|YSK4_uc010zbg.1_Silent_p.A429A|YSK4_uc002tuh.3_Silent_p.A1025A|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1297	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAAGTCTGCTGCATTTTCTG	0.512													7	21					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135738474	135738474	+	Silent	SNP	G	A	A	rs149473090		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:135738474G>A	uc002tue.1	-	9	3868	c.3837C>T	c.(3835-3837)ATC>ATT	p.I1279I	YSK4_uc002tuf.1_Silent_p.I461I|YSK4_uc010fnc.1_Silent_p.I413I|YSK4_uc010fnd.1_Silent_p.I1166I|YSK4_uc010zbg.1_Silent_p.I411I|YSK4_uc002tuh.3_Silent_p.I1007I|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1279	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GGTGTGCTCCGATGTAAAACA	0.507													9	24					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745462	135745462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:135745462C>T	uc002tue.1	-	7	1011	c.980G>A	c.(979-981)GGG>GAG	p.G327E	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.G214E|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.G55E|YSK4_uc002tui.3_Missense_Mutation_p.G344E	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	327							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAAGACTGCCCTTTTTCAAA	0.398													21	10					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136567205	136567205	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:136567205C>T	uc002tuu.1	-	8	2723	c.2712G>A	c.(2710-2712)CGG>CGA	p.R904R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	904	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAAAGTCATCCCGAAACGTCC	0.522													25	66					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136567238	136567238	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:136567238G>A	uc002tuu.1	-	8	2690	c.2679C>T	c.(2677-2679)TTC>TTT	p.F893F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	893	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AATCTCTTTCGAACTTGGGTT	0.522													31	78					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136570120	136570120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:136570120G>A	uc002tuu.1	-	7	2125	c.2114C>T	c.(2113-2115)ACC>ATC	p.T705I		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	705	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCCTCCAATGGTATCATAGCT	0.547													18	39					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137852460	137852460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:137852460C>T	uc002tva.1	+	3	875	c.875C>T	c.(874-876)TCC>TTC	p.S292F	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.S182F	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTTCAAGATTCCTTCCCATTG	0.448													25	78					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137872754	137872754	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:137872754G>A	uc002tva.1	+	4	1167	c.1167G>A	c.(1165-1167)CAG>CAA	p.Q389Q	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.Q279Q	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TCGAGCAGCAGGATCCCCACT	0.537													6	19					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137988663	137988663	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:137988663G>A	uc002tva.1	+	7	1680	c.1680G>A	c.(1678-1680)AGG>AGA	p.R560R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.R450R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTCCTGAGAGGAAGTCTTGTG	0.483													30	14					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138208523	138208523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:138208523G>A	uc002tva.1	+	14	2975	c.2975G>A	c.(2974-2976)CGA>CAA	p.R992Q	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGAGAATTCGATCCAAATGG	0.413													18	10					0	0	1	0	0
NXPH2	11249	broad.mit.edu	37	2	139428493	139428493	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:139428493C>T	uc002tvi.2	-	2	794	c.794G>A	c.(793-795)TGA>TAA	p.*265*		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	265					neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		GCAGGAAGATCAGCCAGAAGA	0.388													10	33					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141055433	141055433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141055433C>T	uc002tvj.1	-	84	13883	c.12911G>A	c.(12910-12912)GGA>GAA	p.G4304E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4304	Extracellular (Potential).|EGF-like 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGCTGGTTTCCAGCAGTCAC	0.498										TSP Lung(27;0.18)			45	117					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141072564	141072564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141072564C>T	uc002tvj.1	-	83	13717	c.12745G>A	c.(12745-12747)GAA>AAA	p.E4249K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4249	Extracellular (Potential).|EGF-like 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGGTTGACTTCACATCTTTCT	0.378										TSP Lung(27;0.18)			16	31					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141079576	141079576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141079576C>T	uc002tvj.1	-	82	13568	c.12596G>A	c.(12595-12597)GGA>GAA	p.G4199E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4199	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAAATATTTTCCTTCTGGACA	0.358										TSP Lung(27;0.18)			11	43					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141130635	141130635	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141130635C>T	uc002tvj.1	-	69	11682	c.10710G>A	c.(10708-10710)TGG>TGA	p.W3570*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3570	Extracellular (Potential).|LDL-receptor class A 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATCACATTTCCATTTTGCTG	0.358										TSP Lung(27;0.18)			28	64					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141459360	141459360	+	Silent	SNP	C	T	T	rs139951414	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141459360C>T	uc002tvj.1	-	40	7329	c.6357G>A	c.(6355-6357)ACG>ACA	p.T2119T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2119	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATGGTTATCGTTTCTGTGG	0.413										TSP Lung(27;0.18)			15	33					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141598489	141598489	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141598489C>T	uc002tvj.1	-	30	6084	c.5112G>A	c.(5110-5112)AGG>AGA	p.R1704R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1704	Extracellular (Potential).|LDL-receptor class B 15.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TACTTTACCCCCTGACTGGGT	0.338										TSP Lung(27;0.18)			4	29					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141773305	141773305	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141773305T>A	uc002tvj.1	-	13	3122	c.2150A>T	c.(2149-2151)GAT>GTT	p.D717V	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	717	Extracellular (Potential).|LDL-receptor class B 8.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCAATATGATCGTAATAGGC	0.388										TSP Lung(27;0.18)			15	10					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141986872	141986872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:141986872C>T	uc002tvj.1	-	6	1702	c.730G>A	c.(730-732)GAA>AAA	p.E244K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	244	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATCATATCTTCATTATAAATA	0.303										TSP Lung(27;0.18)			10	20					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	142012121	142012121	+	Missense_Mutation	SNP	C	T	T	rs145092192		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:142012121C>T	uc002tvj.1	-	4	1405	c.433G>A	c.(433-435)GAA>AAA	p.E145K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	145	Extracellular (Potential).|EGF-like 1.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.E145K(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTGTTATTTCGAATCCATCC	0.343										TSP Lung(27;0.18)			27	15					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149240932	149240932	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:149240932C>T	uc002twm.3	+	10	3760	c.2772C>T	c.(2770-2772)ATC>ATT	p.I924I	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.I924I|MBD5_uc002two.2_5'Flank|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	924						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CTCTACCTATCTCTTTGCCAG	0.478													44	101					0	0	1	0	0
KIF5C	3800	broad.mit.edu	37	2	149864535	149864535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:149864535C>T	uc010zbu.1	+	23	2872	c.2504C>T	c.(2503-2505)TCC>TTC	p.S835F	KIF5C_uc002tws.1_RNA|KIF5C_uc002twu.1_Missense_Mutation_p.S117F	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	835					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		CAGAAAATTTCCTTCTTGGAG	0.542													9	43					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152404231	152404231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:152404231G>A	uc010fnx.2	-	104	15267	c.15076C>T	c.(15076-15078)CAC>TAC	p.H5026Y	NEB_uc002txr.2_Missense_Mutation_p.H1449Y	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5026	Nebulin 137.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTCAGTTTGTGGTACAATTCC	0.438													6	17					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152404847	152404847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:152404847C>T	uc010fnx.2	-	103	15220	c.15029G>A	c.(15028-15030)CGG>CAG	p.R5010Q	NEB_uc002txr.2_Missense_Mutation_p.R1433Q	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5010	Nebulin 137.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTTGACTCTCCGGACGTGGAC	0.423													12	44					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152420431	152420431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:152420431C>T	uc010fnx.2	-	90	13573	c.13382G>A	c.(13381-13383)GGG>GAG	p.G4461E	NEB_uc002txr.2_Missense_Mutation_p.G884E	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4461	Nebulin 122.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCCCACGCCCCTTTATACAG	0.438													6	11					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152471012	152471012	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:152471012G>A	uc010fnx.2	-	73	10841	c.10650C>T	c.(10648-10650)ATC>ATT	p.I3550I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3550	Nebulin 97.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGGCCACATGGATGGACCACA	0.507													34	103					0	0	1	0	0
FMNL2	114793	broad.mit.edu	37	2	153481956	153481956	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:153481956G>A	uc002tye.2	+	16	2209	c.1842G>A	c.(1840-1842)GTG>GTA	p.V614V	FMNL2_uc010fob.2_Silent_p.V70V|FMNL2_uc002tyf.2_Silent_p.V63V	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	614					actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						CTTTAGCTGTGAAAATTAAGA	0.418													5	16					0	0	1	0	0
GALNT13	114805	broad.mit.edu	37	2	155115612	155115612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:155115612G>A	uc002tyr.3	+	8	1503	c.936G>A	c.(934-936)ATG>ATA	p.M312I	GALNT13_uc002tyt.3_Missense_Mutation_p.M312I|GALNT13_uc010foc.1_Missense_Mutation_p.M131I|GALNT13_uc010fod.2_Missense_Mutation_p.M65I	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	312	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATGCAGGAATGGATATCTGGG	0.368													21	55					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160676372	160676372	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:160676372T>C	uc002ubc.3	-	29	4087	c.4018A>G	c.(4018-4020)AGA>GGA	p.R1340G	LY75_uc002ubb.3_Missense_Mutation_p.R1340G|LY75_uc010fos.2_Missense_Mutation_p.R1340G	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1340	Extracellular (Potential).|C-type lectin 8.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ATAGTTGGTCTTCCTGCTCTC	0.343													20	43					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160798372	160798372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:160798372G>A	uc002ube.1	-	30	4516	c.4309C>T	c.(4309-4311)CCT>TCT	p.P1437S	PLA2R1_uc010zcp.1_Missense_Mutation_p.P1435S	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1437	Endocytosis signal.|Cytoplasmic (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GGATAGTAAGGATTCCGAAAC	0.388													14	9					0	0	1	0	0
ITGB6	3694	broad.mit.edu	37	2	160994664	160994665	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:160994664_160994665CC>TT	uc002ubh.2	-	9	1169_1170	c.1153_1154GG>AA	c.(1153-1155)GGA>AAA	p.G385K	ITGB6_uc010fou.2_Missense_Mutation_p.G385K|ITGB6_uc010zcq.1_Missense_Mutation_p.G343K|ITGB6_uc010fov.1_Missense_Mutation_p.G385K	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	385	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						CAAGTTGAGTCCTTCAGTGTCT	0.436													26	66					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162661050	162661050	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:162661050G>A	uc002ubx.3	+	3	406	c.222G>A	c.(220-222)AAG>AAA	p.K74K	SLC4A10_uc010fpa.1_Silent_p.K86K|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.K74K|SLC4A10_uc010zcs.1_Silent_p.K85K	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	74	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						AACACAGAAAGAGAGACAGAG	0.393													7	3					0	0	1	0	0
DPP4	1803	broad.mit.edu	37	2	162873347	162873347	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:162873347A>G	uc002ubz.2	-	18	2059	c.1498T>C	c.(1498-1500)TTG>CTG	p.L500L	DPP4_uc010fpb.2_Silent_p.L176L	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	500	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	ATTTTATCCAAAGCTGAATTG	0.353													12	32					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163256735	163256735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:163256735C>T	uc002uch.1	-	10	2583	c.2371G>A	c.(2371-2373)GAA>AAA	p.E791K		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	791	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTGAGAATTTCAATGGAGCCT	0.428													18	41					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163292019	163292020	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:163292019_163292020CC>TT	uc002uch.1	-	8	1854_1855	c.1642_1643GG>AA	c.(1642-1644)GGC>AAC	p.G548N	KCNH7_uc002uci.2_Missense_Mutation_p.G541N	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	548	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AACAGCAGCGCCATATTCTGAA	0.46													14	32					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163374271	163374271	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:163374271C>T	uc002uch.1	-	4	1073	c.861G>A	c.(859-861)AAG>AAA	p.K287K	KCNH7_uc002uci.2_Silent_p.K287K	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	287	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TAAATATGTTCTTGGGGTGGA	0.383													13	32					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163374308	163374308	+	Missense_Mutation	SNP	G	A	A	rs139430414		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:163374308G>A	uc002uch.1	-	4	1036	c.824C>T	c.(823-825)TCG>TTG	p.S275L	KCNH7_uc002uci.2_Missense_Mutation_p.S275L	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	275	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ATCATGGACCGAAGATGCTCT	0.453													13	29					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165551680	165551680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:165551680G>A	uc010zcw.1	-	15	2661	c.2537C>T	c.(2536-2538)TCC>TTC	p.S846F	COBLL1_uc002ucp.2_Missense_Mutation_p.S779F|COBLL1_uc002ucq.2_Missense_Mutation_p.S741F|COBLL1_uc010zcx.1_Missense_Mutation_p.S787F|COBLL1_uc002ucn.2_Missense_Mutation_p.S207F|COBLL1_uc002uco.2_Missense_Mutation_p.S510F	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	817										ovary(2)|pancreas(1)	3						TATTTCCAAGGATTTGGGAGG	0.378													29	83					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166201246	166201246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:166201246C>T	uc002udc.2	+	16	3034	c.2744C>T	c.(2743-2745)TCC>TTC	p.S915F	SCN2A_uc002udd.2_Missense_Mutation_p.S915F|SCN2A_uc002ude.2_Missense_Mutation_p.S915F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	915	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGCAAGATTTCCAATGATTGT	0.488													38	89					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166245525	166245525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:166245525C>T	uc002udc.2	+	27	5499	c.5209C>T	c.(5209-5211)CAC>TAC	p.H1737Y	SCN2A_uc002udd.2_Missense_Mutation_p.H1737Y|SCN2A_uc002ude.2_Missense_Mutation_p.H1737Y	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1737	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGACAAAGATCACCCTGGAAG	0.453													57	117					0	0	1	0	0
GALNT3	2591	broad.mit.edu	37	2	166606258	166606258	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:166606258G>A	uc010fph.1	-	10	2160	c.1773C>T	c.(1771-1773)ATC>ATT	p.I591I		NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	591	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						GTACCTTCTGGATCTCCCATA	0.393													47	82					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166848847	166848847	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:166848847G>A	uc010zcz.1	-	26	4923	c.4905C>T	c.(4903-4905)ATC>ATT	p.I1635I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1646	Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCAGACGTAGGATTCGGCCAA	0.478													21	58					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166892614	166892614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:166892614C>T	uc010zcz.1	-	16	3358	c.3340G>A	c.(3340-3342)GAA>AAA	p.E1114K	SCN1A_uc002udo.3_Missense_Mutation_p.E994K|SCN1A_uc010fpk.2_Missense_Mutation_p.E966K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1125						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTTAAATTTTCAAAGTCAGAT	0.333													25	71					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167145070	167145070	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:167145070G>A	uc010fpl.2	-	10	1532	c.1191C>T	c.(1189-1191)ATC>ATT	p.I397I	uc002udp.2_Intron|SCN9A_uc002udr.1_Silent_p.I268I|SCN9A_uc002uds.1_Silent_p.I268I|SCN9A_uc002udt.1_Silent_p.I268I	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	397	I.|Helical; Name=S6 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCACAGCCAGGATCAAGTTTA	0.408													27	44					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167163561	167163562	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:167163561_167163562CC>TT	uc010fpl.2	-	3	622_623	c.281_282GG>AA	c.(280-282)GGG>GAA	p.G94E	SCN9A_uc002udr.1_5'Flank|SCN9A_uc002uds.1_5'Flank|SCN9A_uc002udt.1_5'Flank	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	94						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AGATTGTTTTCCCTTTGTTCAA	0.327													6	10					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099166	168099166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168099166G>A	uc002udx.2	+	8	1282	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E247K|XIRP2_uc010fpq.2_Missense_Mutation_p.E200K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	247					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAGAGGAAGGAAACATCAAC	0.423													16	29					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099963	168099963	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168099963G>A	uc002udx.2	+	8	2079	c.2061G>A	c.(2059-2061)GGG>GGA	p.G687G	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.G512G|XIRP2_uc010fpq.2_Silent_p.G465G|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	512	Xin 5.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAACTGGGGGGGATGTCAAGA	0.418													16	22					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100393	168100393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168100393G>A	uc002udx.2	+	8	2509	c.2491G>A	c.(2491-2493)GAA>AAA	p.E831K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E656K|XIRP2_uc010fpq.2_Missense_Mutation_p.E609K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	656					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CATTGAAAAGGAAAAAATAAT	0.388													15	56					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168101472	168101472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168101472G>A	uc002udx.2	+	8	3588	c.3570G>A	c.(3568-3570)ATG>ATA	p.M1190I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.M1015I|XIRP2_uc010fpq.2_Missense_Mutation_p.M968I|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1015					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTGTTGAAATGGATATACAAG	0.368													6	28					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168103908	168103908	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168103908G>A	uc002udx.2	+	8	6024	c.6006G>A	c.(6004-6006)GGG>GGA	p.G2002G	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.G1827G|XIRP2_uc010fpq.2_Silent_p.G1780G|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1827					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAACTATGGGGAAATCTTGCC	0.448													16	37					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168108428	168108428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:168108428C>T	uc002udx.2	+	8	10544	c.10526C>T	c.(10525-10527)ACC>ATC	p.T3509I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.T3334I|XIRP2_uc010fpq.2_Missense_Mutation_p.T3287I|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3334					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATGAGAACCACCTTCCAAGAG	0.388													6	31					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169780291	169780292	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169780291_169780292GG>AA	uc002ueo.1	-	28	3932_3933	c.3806_3807CC>TT	c.(3805-3807)ACC>ATT	p.T1269I	ABCB11_uc010zda.1_Missense_Mutation_p.T687I|ABCB11_uc010zdb.1_Missense_Mutation_p.T745I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1269	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TGACAATGCAGGTCCGACCCTC	0.525													26	16					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169783671	169783671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169783671G>A	uc002ueo.1	-	26	3739	c.3613C>T	c.(3613-3615)CCA>TCA	p.P1205S	ABCB11_uc010zda.1_Missense_Mutation_p.P623S|ABCB11_uc010zdb.1_Missense_Mutation_p.P681S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1205	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTCACCTCTGGGAGTGACATG	0.398													37	96					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169787182	169787182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169787182C>T	uc002ueo.1	-	25	3530	c.3404G>A	c.(3403-3405)GGG>GAG	p.G1135E	ABCB11_uc010zda.1_Missense_Mutation_p.G577E|ABCB11_uc010zdb.1_Missense_Mutation_p.G611E	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1135	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TACCACCTTCCCTTGATCAGG	0.473													11	18					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169825938	169825938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169825938C>T	uc002ueo.1	-	16	2059	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	ABCB11_uc010zda.1_Missense_Mutation_p.E87K|ABCB11_uc010zdb.1_Missense_Mutation_p.E121K	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	645	Cytoplasmic (Potential).|ABC transporter 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CCTTTCCTTTCCAGTAATTCT	0.438													8	14					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169828506	169828506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169828506G>A	uc002ueo.1	-	14	1615	c.1489C>T	c.(1489-1491)CAG>TAG	p.Q497*	ABCB11_uc010zda.1_5'UTR|ABCB11_uc010zdb.1_5'UTR	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	497	Cytoplasmic (Potential).|ABC transporter 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ATCCCAATCTGATCTCTAAGC	0.458													6	28					0	0	1	0	0
DHRS9	10170	broad.mit.edu	37	2	169938249	169938249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:169938249G>A	uc002uep.2	+	5	1662	c.158G>A	c.(157-159)GGA>GAA	p.G53E	DHRS9_uc002ueq.2_Missense_Mutation_p.G53E|DHRS9_uc010zdc.1_Missense_Mutation_p.G113E|DHRS9_uc002uer.1_Missense_Mutation_p.G53E|DHRS9_uc010zdd.1_Missense_Mutation_p.G53E|DHRS9_uc010zde.1_Missense_Mutation_p.G53E	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	53	NAD (By similarity).				9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						GATAAAAAGGGATTTCATGTA	0.423													21	33					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170100032	170100032	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170100032T>C	uc002ues.2	-	23	3644	c.3431A>G	c.(3430-3432)AAT>AGT	p.N1144S	LRP2_uc010zdf.1_Missense_Mutation_p.N1007S	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1144	LDL-receptor class A 10.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTCTGTCGAATCTAATGTCAT	0.388													33	15					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170103275	170103275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170103275G>A	uc002ues.2	-	21	3343	c.3130C>T	c.(3130-3132)CTC>TTC	p.L1044F	LRP2_uc010zdf.1_Missense_Mutation_p.L907F	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1044	LDL-receptor class A 8.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCATCACAGAGATAGTAATTG	0.458													39	96					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170136018	170136018	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170136018C>A	uc002ues.2	-	12	1642	c.1429G>T	c.(1429-1431)GTT>TTT	p.V477F	LRP2_uc010zdf.1_Missense_Mutation_p.V477F	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	477	LDL-receptor class B 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTATTATTAACCCAGTCCACA	0.378													14	42					1.5842e-08	1.59312e-08	1	1	0
LRP2	4036	broad.mit.edu	37	2	170151129	170151129	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170151129G>A	uc002ues.2	-	5	732	c.519C>T	c.(517-519)TCC>TCT	p.S173S	LRP2_uc010zdf.1_Silent_p.S173S	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	173	LDL-receptor class A 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTTCATCTGAGGAGTCCCTGC	0.308													14	36					0	0	1	0	0
C2orf77	129881	broad.mit.edu	37	2	170518913	170518913	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170518913C>T	uc002ufe.2	-	5	790	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	232	Potential.										0						CATATTTTTTCCTTCTTTCCT	0.274													26	13					0	0	1	0	0
PHOSPHO2	493911	broad.mit.edu	37	2	170557699	170557699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:170557699C>T	uc002ufg.2	+	4	606	c.218C>T	c.(217-219)CCT>CTT	p.P73L	KLHL23_uc002ufh.1_Intron	NM_001008489	NP_001008489	Q8TCD6	PHOP2_HUMAN	phosphatase, orphan 2	73							metal ion binding|pyridoxal phosphatase activity			skin(1)	1						ACATCATTGCCTTTCACTCCA	0.353													21	37					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171056792	171056792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:171056792G>A	uc002ufy.2	+	3	462	c.319G>A	c.(319-321)GAG>AAG	p.E107K	MYO3B_uc002ufv.2_Missense_Mutation_p.E94K|MYO3B_uc010fqb.1_Missense_Mutation_p.E94K|MYO3B_uc002ufz.2_Missense_Mutation_p.E107K|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.E94K	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	107	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCTGGTCCTGGAGGTAAGAGG	0.453													10	31					0	0	1	0	0
ITGA6	3655	broad.mit.edu	37	2	173355752	173355752	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:173355752G>C	uc002uhp.1	+	21	2883	c.2680G>C	c.(2680-2682)GAG>CAG	p.E894Q	ITGA6_uc010zdy.1_Missense_Mutation_p.E775Q|ITGA6_uc002uho.1_Missense_Mutation_p.E894Q|ITGA6_uc010fqm.1_Missense_Mutation_p.E525Q	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	933	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TTTTTTTCAGGAGTCTCACAA	0.328													68	43					0	0	1	0	0
RBM45	129831	broad.mit.edu	37	2	178977483	178977483	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:178977483C>T	uc002ulv.2	+	1	302	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	70	RRM 1.				cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			GCATTGCTTTCGTCAAGTTCG	0.627													19	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179396239	179396239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179396239C>T	uc010zfg.1	-	307	97623	c.97399G>A	c.(97399-97401)GAT>AAT	p.D32467N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D26162N|TTN_uc010zfi.1_Missense_Mutation_p.D26095N|TTN_uc010zfj.1_Missense_Mutation_p.D25970N|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33394							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGTATAATCCCCTCCTGTC	0.493													34	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179397432	179397432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179397432C>T	uc010zfg.1	-	307	96430	c.96206G>A	c.(96205-96207)CGG>CAG	p.R32069Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R25764Q|TTN_uc010zfi.1_Missense_Mutation_p.R25697Q|TTN_uc010zfj.1_Missense_Mutation_p.R25572Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32996							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTGTACGCCGGCGGGCTGG	0.458													25	17					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179397749	179397749	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179397749C>T	uc010zfg.1	-	307	96113	c.95889G>A	c.(95887-95889)AAG>AAA	p.K31963K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K25658K|TTN_uc010zfi.1_Silent_p.K25591K|TTN_uc010zfj.1_Silent_p.K25466K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32890							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTCTCCTCCTTCTTTTCTT	0.458													48	144					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179404419	179404419	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179404419C>T	uc010zfg.1	-	301	90893	c.90669G>A	c.(90667-90669)AGG>AGA	p.R30223R	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R23918R|TTN_uc010zfi.1_Silent_p.R23851R|TTN_uc010zfj.1_Silent_p.R23726R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31150							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTATCACCCTGACCTTGA	0.502													42	20					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179404579	179404579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179404579C>T	uc010zfg.1	-	301	90733	c.90509G>A	c.(90508-90510)TGG>TAG	p.W30170*	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W23865*|TTN_uc010zfi.1_Nonsense_Mutation_p.W23798*|TTN_uc010zfj.1_Nonsense_Mutation_p.W23673*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31097							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTTGGTCCATTTACATAT	0.433													36	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179404885	179404885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179404885C>T	uc010zfg.1	-	300	90528	c.90304G>A	c.(90304-90306)GAA>AAA	p.E30102K	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23797K|TTN_uc010zfi.1_Missense_Mutation_p.E23730K|TTN_uc010zfj.1_Missense_Mutation_p.E23605K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31029							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACCTGTATTCTGCACCCTGA	0.463													116	60					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179407982	179407982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179407982C>T	uc010zfg.1	-	296	89238	c.89014G>A	c.(89014-89016)GAG>AAG	p.E29672K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23367K|TTN_uc010zfi.1_Missense_Mutation_p.E23300K|TTN_uc010zfj.1_Missense_Mutation_p.E23175K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30599							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGCAGGCCTCGAGAACATAT	0.473													69	40					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179413974	179413974	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179413974G>A	uc010zfg.1	-	288	84899	c.84675C>T	c.(84673-84675)TTC>TTT	p.F28225F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F21920F|TTN_uc010zfi.1_Silent_p.F21853F|TTN_uc010zfj.1_Silent_p.F21728F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29152							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATGACATGGAATTCATACT	0.453													35	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179422801	179422801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179422801C>T	uc010zfg.1	-	277	79800	c.79576G>A	c.(79576-79578)GAA>AAA	p.E26526K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E20221K|TTN_uc010zfi.1_Missense_Mutation_p.E20154K|TTN_uc010zfj.1_Missense_Mutation_p.E20029K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27453							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGTAATTTCGGTATTAAAT	0.428													26	63					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179430272	179430272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179430272C>T	uc010zfg.1	-	275	73107	c.72883G>A	c.(72883-72885)GAT>AAT	p.D24295N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D17990N|TTN_uc010zfi.1_Missense_Mutation_p.D17923N|TTN_uc010zfj.1_Missense_Mutation_p.D17798N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25222							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCTTGGATCGCTTTTTCCT	0.403													33	87					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179431872	179431872	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179431872G>A	uc010zfg.1	-	275	71507	c.71283C>T	c.(71281-71283)ACC>ACT	p.T23761T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T17456T|TTN_uc010zfi.1_Silent_p.T17389T|TTN_uc010zfj.1_Silent_p.T17264T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24688							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAGTCGACTGGTTTCTCGCT	0.403													40	61					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179434655	179434655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179434655G>A	uc010zfg.1	-	275	68724	c.68500C>T	c.(68500-68502)CCT>TCT	p.P22834S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P16529S|TTN_uc010zfi.1_Missense_Mutation_p.P16462S|TTN_uc010zfj.1_Missense_Mutation_p.P16337S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23761							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATAAATAGGATCACAAGCC	0.423													13	32					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179438979	179438979	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179438979G>A	uc010zfg.1	-	275	64400	c.64176C>T	c.(64174-64176)ATC>ATT	p.I21392I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I15087I|TTN_uc010zfi.1_Silent_p.I15020I|TTN_uc010zfj.1_Silent_p.I14895I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22319							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTTCAACGATATAACTGG	0.413													14	34					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179441054	179441054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179441054C>T	uc010zfg.1	-	275	62325	c.62101G>A	c.(62101-62103)GGA>AGA	p.G20701R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G14396R|TTN_uc010zfi.1_Missense_Mutation_p.G14329R|TTN_uc010zfj.1_Missense_Mutation_p.G14204R|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21628							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTCAAGTCCACCATCATAA	0.473													6	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179453500	179453500	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179453500C>T	uc010zfg.1	-	253	55472	c.55248G>A	c.(55246-55248)TGG>TGA	p.W18416*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W12111*|TTN_uc010zfi.1_Nonsense_Mutation_p.W12044*|TTN_uc010zfj.1_Nonsense_Mutation_p.W11919*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19343							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGTGGATTCCAAACCACAG	0.418													15	37					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179454532	179454532	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179454532G>A	uc010zfg.1	-	253	54440	c.54216C>T	c.(54214-54216)TTC>TTT	p.F18072F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F11767F|TTN_uc010zfi.1_Silent_p.F11700F|TTN_uc010zfj.1_Silent_p.F11575F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18999							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACAAACTCGGAAATAGTATT	0.413													68	63					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179454770	179454770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179454770G>A	uc010zfg.1	-	253	54202	c.53978C>T	c.(53977-53979)TCA>TTA	p.S17993L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S11688L|TTN_uc010zfi.1_Missense_Mutation_p.S11621L|TTN_uc010zfj.1_Missense_Mutation_p.S11496L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18920							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACGATGGCTGAACCTTGGGC	0.433													36	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179456953	179456953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179456953G>A	uc010zfg.1	-	251	52198	c.51974C>T	c.(51973-51975)TCA>TTA	p.S17325L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S11020L|TTN_uc010zfi.1_Missense_Mutation_p.S10953L|TTN_uc010zfj.1_Missense_Mutation_p.S10828L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18252							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGTAACATGAATCTTTCCT	0.388													19	6					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179474049	179474049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179474049C>T	uc010zfg.1	-	222	44508	c.44284G>A	c.(44284-44286)GGA>AGA	p.G14762R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8457R|TTN_uc010zfi.1_Missense_Mutation_p.G8390R|TTN_uc010zfj.1_Missense_Mutation_p.G8265R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15689							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGATTCTCCCTTTTTGCTG	0.463													24	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179474868	179474868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179474868C>T	uc010zfg.1	-	220	43905	c.43681G>A	c.(43681-43683)GGA>AGA	p.G14561R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8256R|TTN_uc010zfi.1_Missense_Mutation_p.G8189R|TTN_uc010zfj.1_Missense_Mutation_p.G8064R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15488							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTCTCCTCCACCAACCTTG	0.403													39	40					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179484381	179484381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179484381C>T	uc010zfg.1	-	199	39183	c.38959G>A	c.(38959-38961)GAC>AAC	p.D12987N	TTN_uc010zfh.1_Missense_Mutation_p.D6682N|TTN_uc010zfi.1_Missense_Mutation_p.D6615N|TTN_uc010zfj.1_Missense_Mutation_p.D6490N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13914							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTCTTTGTCTTTGGCAATA	0.388													28	52					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179495008	179495008	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179495008T>C	uc010zfg.1	-	188	36761	c.36537A>G	c.(36535-36537)CAA>CAG	p.Q12179Q	TTN_uc010zfh.1_Silent_p.Q5874Q|TTN_uc010zfi.1_Silent_p.Q5807Q|TTN_uc010zfj.1_Silent_p.Q5682Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13106							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTGGCAGCTTGGAAATCCA	0.398													34	20					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179504809	179504809	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179504809G>A	uc010zfg.1	-	171	33272	c.33048C>T	c.(33046-33048)CTC>CTT	p.L11016L	TTN_uc010zfh.1_Silent_p.L4711L|TTN_uc010zfi.1_Silent_p.L4644L|TTN_uc010zfj.1_Silent_p.L4519L|TTN_uc010fre.1_Silent_p.L894L|TTN_uc002umw.1_RNA|TTN_uc002umx.1_Silent_p.L231L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11943							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGTGCAGGGAGAGGTATTG	0.388													26	74					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179532236	179532236	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179532236C>T	uc010zfk.1	-	7	716	c.168G>A	c.(166-168)AAG>AAA	p.K56K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11250							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACAACTTTCTTGGGTGGCT	0.308													5	12					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179535837	179535837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179535837C>T	uc010zfg.1	-	151	31609	c.31385G>A	c.(31384-31386)CGA>CAA	p.R10462Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R7123Q|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11389							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGCTCTTTTCGAGGAACAAC	0.363													9	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542465	179542465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179542465G>A	uc010zfg.1	-	143	30666	c.30442C>T	c.(30442-30444)CCA>TCA	p.P10148S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6809S|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11075							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAGGTGGAATTTCCTCT	0.438													28	56					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542485	179542485	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179542485A>G	uc010zfg.1	-	143	30646	c.30422T>C	c.(30421-30423)CTA>CCA	p.L10141P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L6802P|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11068							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTCAGGTAGAACTTCCTC	0.423													53	49					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179566899	179566899	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179566899C>T	uc010zfg.1	-	105	26999	c.26775G>A	c.(26773-26775)ACG>ACA	p.T8925T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.T5586T|TTN_uc010fre.1_Silent_p.T36T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9852							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCACCTTTCGTCGTTAGGT	0.458													12	18					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179578750	179578750	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179578750T>C	uc010zfg.1	-	89	23127	c.22903A>G	c.(22903-22905)AGC>GGC	p.S7635G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4296G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8562							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGAAGAAGCTTATTTTGTAT	0.443													9	18					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179582526	179582526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179582526G>A	uc010zfg.1	-	84	21567	c.21343C>T	c.(21343-21345)CCA>TCA	p.P7115S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P3776S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8042							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGAAAGGTGGAAGTTTGCGC	0.388													7	15					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179583222	179583222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179583222C>T	uc010zfg.1	-	82	21103	c.20879G>A	c.(20878-20880)TGG>TAG	p.W6960*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.W3621*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7887							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCCTTTATCCAGCTCACTGA	0.428													12	32					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584073	179584073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179584073G>A	uc010zfg.1	-	80	20536	c.20312C>T	c.(20311-20313)TCA>TTA	p.S6771L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3432L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7698							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGCCAACTGAAATCGGGGC	0.502													21	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179587193	179587193	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179587193G>A	uc010zfg.1	-	74	18813	c.18589C>T	c.(18589-18591)CGA>TGA	p.R6197*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R2858*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7124							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATTTAATCGACAAGTGAGT	0.418													28	56					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179587274	179587274	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179587274C>T	uc010zfg.1	-	74	18733	c.18509_splice	c.e74-1	p.E6170_splice	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Splice_Site_p.E2831_splice	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTGGCGCTCTGTAGGGAGA	0.373													34	60					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179587617	179587617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179587617C>T	uc010zfg.1	-	73	18501	c.18277G>A	c.(18277-18279)GGA>AGA	p.G6093R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2754R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7020							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCGAATCTCCAACTGCTGCC	0.423													4	15					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179589021	179589021	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179589021C>T	uc010zfg.1	-	69	17573	c.17349G>A	c.(17347-17349)GGG>GGA	p.G5783G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2444G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6710							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTGCTTTTCCCAACATTAT	0.383													16	24					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594115	179594115	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179594115G>A	uc010zfg.1	-	61	15260	c.15036C>T	c.(15034-15036)CTC>CTT	p.L5012L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L1673L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5939							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTTATATGGAGGTTAAACA	0.468													25	68					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594165	179594165	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179594165G>A	uc010zfg.1	-	61	15210	c.14986C>T	c.(14986-14988)CGA>TGA	p.R4996*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R1657*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5923							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGCTGCTTCGAATTTCCCTG	0.453													20	53					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604892	179604892	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179604892G>A	uc010zfh.1	-	46	12779	c.12555C>T	c.(12553-12555)ATC>ATT	p.I4185I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I4118I|TTN_uc010zfj.1_Silent_p.I3993I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGACTCAATGATTTGGTCTG	0.458													48	28					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179605373	179605373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179605373G>A	uc010zfh.1	-	46	12298	c.12074C>T	c.(12073-12075)TCA>TTA	p.S4025L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S3958L|TTN_uc010zfj.1_Missense_Mutation_p.S3833L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTGTTAATGAATTAATTTG	0.393													18	45					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179606592	179606592	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179606592G>A	uc010zfh.1	-	46	11079	c.10855C>T	c.(10855-10857)CAA>TAA	p.Q3619*	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Nonsense_Mutation_p.Q3552*|TTN_uc010zfj.1_Nonsense_Mutation_p.Q3427*|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGATAATTGAAGTTCGGCG	0.328													5	4					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179612958	179612958	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179612958G>A	uc002unb.2	-	46	14393	c.14169C>T	c.(14167-14169)TCC>TCT	p.S4723S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCAGAAAAGGATTTAAGAG	0.323													18	28					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615326	179615326	+	Missense_Mutation	SNP	G	A	A	rs142848087		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179615326G>A	uc002unb.2	-	46	12025	c.11801C>T	c.(11800-11802)TCT>TTT	p.S3934F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9751							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTCGAAAAGAATTTTCAAA	0.338													9	19					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179636172	179636172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179636172C>T	uc010zfg.1	-	34	8106	c.7882G>A	c.(7882-7884)GAT>AAT	p.D2628N	TTN_uc010zfh.1_Missense_Mutation_p.D2582N|TTN_uc010zfi.1_Missense_Mutation_p.D2582N|TTN_uc010zfj.1_Missense_Mutation_p.D2582N|TTN_uc002unb.2_Missense_Mutation_p.D2628N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2628							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGGTCTGATCTGTGAGTGGC	0.453													10	38					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640473	179640473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179640473G>A	uc010zfg.1	-	28	6342	c.6118C>T	c.(6118-6120)CAC>TAC	p.H2040Y	TTN_uc010zfh.1_Missense_Mutation_p.H1994Y|TTN_uc010zfi.1_Missense_Mutation_p.H1994Y|TTN_uc010zfj.1_Missense_Mutation_p.H1994Y|TTN_uc002unb.2_Missense_Mutation_p.H2040Y|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2040							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGTCCAGTGGAGAAGTTCA	0.428													68	41					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179641161	179641161	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179641161C>T	uc010zfg.1	-	28	5654	c.5430G>A	c.(5428-5430)AGG>AGA	p.R1810R	TTN_uc010zfh.1_Silent_p.R1764R|TTN_uc010zfi.1_Silent_p.R1764R|TTN_uc010zfj.1_Silent_p.R1764R|TTN_uc002unb.2_Silent_p.R1810R|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1810							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAAGCCTTTCCTCCCCTCAG	0.413													24	64					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179647313	179647313	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179647313T>A	uc010zfg.1	-	19	3341	c.3117A>T	c.(3115-3117)GAA>GAT	p.E1039D	TTN_uc010zfh.1_Missense_Mutation_p.E993D|TTN_uc010zfi.1_Missense_Mutation_p.E993D|TTN_uc010zfj.1_Missense_Mutation_p.E993D|TTN_uc002unb.2_Missense_Mutation_p.E1039D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1039							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTTTCCTTTTCAAATTCTT	0.358													7	14					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179648797	179648797	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179648797C>T	uc010zfg.1	-	16	2999	c.2775G>A	c.(2773-2775)AAG>AAA	p.K925K	TTN_uc010zfh.1_Silent_p.K879K|TTN_uc010zfi.1_Silent_p.K879K|TTN_uc010zfj.1_Silent_p.K879K|TTN_uc002unb.2_Silent_p.K925K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	925							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGACCAACCTTGGCTTCGC	0.547													21	37					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179721055	179721055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179721055C>T	uc002unf.1	-	8	1126	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	357	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CGAGATTTTTCATTTTTCTTA	0.289													10	33					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179733900	179733900	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:179733900G>A	uc002unf.1	-	5	670	c.613C>T	c.(613-615)CAG>TAG	p.Q205*		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	205	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCGTAATCCTGGATTCTCTCT	0.418													13	38					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183104926	183104927	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:183104926_183104927CC>TT	uc002uos.2	-	4	392_393	c.308_309GG>AA	c.(307-309)CGG>CAA	p.R103Q	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.R103Q|PDE1A_uc010zfq.1_Missense_Mutation_p.R103Q|PDE1A_uc002uor.2_Missense_Mutation_p.R87Q|PDE1A_uc002uou.2_Missense_Mutation_p.R69Q	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	103					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCCCCATTTTCCGTGTAAAGGT	0.421													15	46					0	0	1	0	0
NUP35	129401	broad.mit.edu	37	2	183995214	183995214	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:183995214A>G	uc002upf.2	+	3	383	c.280A>G	c.(280-282)ATA>GTA	p.I94V	NUP35_uc010zfs.1_Missense_Mutation_p.I76V|NUP35_uc010zft.1_5'UTR|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	94					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						AGTTAGAAGTATATATGATGA	0.378													24	59					0	0	1	0	0
NUP35	129401	broad.mit.edu	37	2	184025781	184025781	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:184025781G>A	uc002upf.2	+	9	1007	c.904_splice	c.e9-1	p.V302_splice	NUP35_uc010zfs.1_Splice_Site_p.V284_splice|NUP35_uc010zft.1_Splice_Site_p.V184_splice|NUP35_uc002upg.2_Splice_Site	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa						carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						TTTTTTAATAGGTTATTTCTG	0.353													4	12					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801717	185801717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:185801717C>T	uc002uph.2	+	4	2188	c.1594C>T	c.(1594-1596)CTC>TTC	p.L532F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	532						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGATGATATTCTCTCCAGTAG	0.343													9	23					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802161	185802161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:185802161G>A	uc002uph.2	+	4	2632	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	680						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATGGAATACTGAATACAACAC	0.313													11	44					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802432	185802432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:185802432G>A	uc002uph.2	+	4	2903	c.2309G>A	c.(2308-2310)CGA>CAA	p.R770Q		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	770						intracellular	zinc ion binding	p.R770Q(1)		ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AGATTCTATCGAAAACGTAGA	0.333													10	33					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187455095	187455095	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:187455095C>T	uc002upq.2	+	1	306	c.30C>T	c.(28-30)CGC>CGT	p.R10R	ITGAV_uc010frs.2_Silent_p.R10R	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	10					angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		GACGGCTGCGCCTCGGTCCCC	0.716													6	22					0	0	1	0	0
TFPI	7035	broad.mit.edu	37	2	188368424	188368424	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:188368424G>T	uc002upx.2	-	2	105	c.72C>A	c.(70-72)GCC>GCA	p.A24A	TFPI_uc002upy.2_Silent_p.A24A|TFPI_uc002upz.2_Silent_p.A20A|TFPI_uc002uqa.2_Silent_p.A24A|TFPI_uc002uqb.2_Silent_p.A24A	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	24					blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	CATTAAGAGGGGCAGGGGCAA	0.363													18	43					2.5808e-16	2.60658e-16	1	1	0
COL3A1	1281	broad.mit.edu	37	2	189869012	189869012	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:189869012G>A	uc002uqj.1	+	40	2970	c.2853G>A	c.(2851-2853)GGG>GGA	p.G951G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	951	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGATTGCTGGGATCACTGGAG	0.493													5	18					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189874904	189874904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:189874904G>A	uc002uqj.1	+	49	3941	c.3824G>A	c.(3823-3825)GGA>GAA	p.G1275E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1275	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GACTATTCAGGAGAATACTGG	0.358													11	25					0	0	1	0	0
MSTN	2660	broad.mit.edu	37	2	190925138	190925138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:190925138C>T	uc002urp.2	-	2	530	c.397G>A	c.(397-399)GGA>AGA	p.G133R		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	133					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTGGGTTTTCCATCCACTTGC	0.328													6	23					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701074	192701074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:192701074C>T	uc002utb.2	-	2	1183	c.853G>A	c.(853-855)GGA>AGA	p.G285R		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	285						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GAGCTTTTTCCTGAGGATATT	0.458													49	143					0	0	1	0	0
TMEFF2	23671	broad.mit.edu	37	2	192818516	192818516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:192818516C>T	uc002utc.2	-	9	1311	c.917G>A	c.(916-918)AGT>AAT	p.S306N		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	306	Required for shedding.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			GTATAGAACACTGTAGTCCTT	0.428													40	13					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196661399	196661399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196661399C>T	uc002utj.3	-	56	10517	c.10416G>A	c.(10414-10416)ATG>ATA	p.M3472I	DNAH7_uc002uti.3_5'Flank	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3472	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTAACATCTTCATAGCAATGG	0.428													16	7					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196673456	196673456	+	Nonsense_Mutation	SNP	T	A	A	rs138256384	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196673456T>A	uc002utj.3	-	53	10134	c.10033A>T	c.(10033-10035)AGA>TGA	p.R3345*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3345					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATAAACTCTCTACGAATGGTT	0.368													32	25					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196729521	196729521	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196729521G>A	uc002utj.3	-	41	6959	c.6858C>T	c.(6856-6858)ATC>ATT	p.I2286I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2286					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCACATCTGCGATTTCTCTGT	0.378													29	67					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196729541	196729541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196729541C>T	uc002utj.3	-	41	6939	c.6838G>A	c.(6838-6840)GAT>AAT	p.D2280N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2280					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAGTTGGTATCCTCCCTCTTG	0.383													25	73					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196759738	196759738	+	Missense_Mutation	SNP	G	A	A	rs142469040		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196759738G>A	uc002utj.3	-	30	4959	c.4858C>T	c.(4858-4860)CGT>TGT	p.R1620C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1620	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.R1620C(1)		skin(10)|ovary(2)	12						GCTAAGACACGATATGCACTA	0.323													11	15					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196801428	196801428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:196801428C>T	uc002utj.3	-	20	3268	c.3167G>A	c.(3166-3168)GGA>GAA	p.G1056E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1056	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTCATTAAGTCCTTTAAGAAT	0.333													12	36					0	0	1	0	0
C2orf66	401027	broad.mit.edu	37	2	197673972	197673972	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:197673972C>T	uc002utv.2	-	1	1029	c.140G>A	c.(139-141)TGG>TAG	p.W47*		NM_213608	NP_998773	Q6UXQ4	CB066_HUMAN	hypothetical protein LOC401027 precursor	47						extracellular region					0						GAGTGGCTTCCATTTGTCCTC	0.498													57	144					0	0	1	0	0
ORC2L	4999	broad.mit.edu	37	2	201785741	201785741	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:201785741G>A	uc002uwr.2	-	14	1526	c.1269C>T	c.(1267-1269)TCC>TCT	p.S423S	ORC2L_uc010zhj.1_Silent_p.S423S	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	423					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						GGTGGTCAATGGATGCTATAA	0.353													12	14					0	0	1	0	0
CFLAR	8837	broad.mit.edu	37	2	202025520	202025520	+	Missense_Mutation	SNP	G	C	C	rs77962008	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:202025520G>C	uc002uxb.3	+	9	1611	c.1159G>C	c.(1159-1161)GCT>CCT	p.A387P	CFLAR_uc010zhk.1_Missense_Mutation_p.A291P|CFLAR_uc002uxc.3_Missense_Mutation_p.A352P|CFLAR_uc010zhl.1_Missense_Mutation_p.A291P|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Missense_Mutation_p.A387P|CFLAR_uc002uxf.2_Missense_Mutation_p.A387P|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_Intron|CFLAR_uc010zhm.1_Missense_Mutation_p.A291P|CFLAR_uc010fsz.2_Missense_Mutation_p.A142P|CFLAR_uc002uxg.2_Missense_Mutation_p.A142P	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	387	Interaction with caspase-8.|Interaction with caspase-3.|Interaction with TRAF1 and TRAF2.|Not proteolytically processed and involved in apoptosis inhibition.|Interaction with caspase-8 subunits p18 and p10.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						GGAATTCAAGGCTCAGAAGCG	0.542													19	11					0	0	1	0	0
STRADB	55437	broad.mit.edu	37	2	202343136	202343136	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:202343136C>T	uc002uyd.3	+	10	1247	c.882C>T	c.(880-882)TTC>TTT	p.F294F		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	294	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						TCAGTATTTTCCCTCAATCAG	0.398													16	32					0	0	1	0	0
STRADB	55437	broad.mit.edu	37	2	202344248	202344248	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:202344248C>A	uc002uyd.3	+	11	1472	c.1107C>A	c.(1105-1107)TTC>TTA	p.F369L		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	369	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						ATGTTTTCTTCAAACAGGTGA	0.303													7	24					1.76689e-08	1.77617e-08	1	1	0
MPP4	58538	broad.mit.edu	37	2	202557634	202557634	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:202557634T>C	uc002uyk.3	-	3	406	c.198A>G	c.(196-198)CTA>CTG	p.L66L	MPP4_uc010ftj.2_Silent_p.L66L|MPP4_uc010zhq.1_Silent_p.L66L|MPP4_uc010zhr.1_Silent_p.L66L|MPP4_uc010zhs.1_Silent_p.L66L|MPP4_uc002uyj.3_Silent_p.L66L|MPP4_uc010zht.1_Silent_p.L66L|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Silent_p.L66L|MPP4_uc002uym.1_Silent_p.L79L|MPP4_uc002uyn.2_Silent_p.L66L	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	66	L27 1.					cytoplasm	protein binding				0						CACTCACCTTTAGCAGAGCCT	0.517													5	5					0	0	1	0	0
BMPR2	659	broad.mit.edu	37	2	203242220	203242220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:203242220C>T	uc002uzf.3	+	1	1171	c.23C>T	c.(22-24)CCC>CTC	p.P8L	BMPR2_uc010ftr.2_Missense_Mutation_p.P8L|BMPR2_uc002uze.2_Missense_Mutation_p.P8L	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	8					anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						CTGCAGCGGCCCTGGCGGGTG	0.652													19	53					0	0	1	0	0
ICA1L	130026	broad.mit.edu	37	2	203682187	203682187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:203682187C>T	uc002uzh.1	-	7	802	c.638G>A	c.(637-639)GGA>GAA	p.G213E	ICA1L_uc002uzi.1_Missense_Mutation_p.G213E	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	213	AH.										0						GCGACTAGCTCCAAGTAAATC	0.403													118	81					0	0	1	0	0
NBEAL1	65065	broad.mit.edu	37	2	203991366	203991366	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:203991366C>T	uc002uzt.3	+	21	3318	c.2985C>T	c.(2983-2985)CTC>CTT	p.L995L		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	995							binding			ovary(1)|skin(1)	2						ATATGCAGCTCCTGCAACAAA	0.383													92	204					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206166306	206166306	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:206166306G>A	uc002var.1	+	18	2718	c.2511G>A	c.(2509-2511)ACG>ACA	p.T837T	PARD3B_uc010fub.1_Silent_p.T837T|PARD3B_uc002vao.1_Silent_p.T837T|PARD3B_uc002vap.1_Silent_p.T775T|PARD3B_uc002vaq.1_Silent_p.T768T	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	837	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TCAAAAAAACgaaagagaagg	0.244													9	30					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206305094	206305094	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:206305094G>A	uc002var.1	+	20	2949	c.2742G>A	c.(2740-2742)AGG>AGA	p.R914R	PARD3B_uc002vao.1_Intron|PARD3B_uc002vap.1_Silent_p.R852R|PARD3B_uc002vaq.1_Silent_p.R845R	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	914					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TATTTTTCAGGATTGGAGCAA	0.363													5	34					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170116	207170116	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:207170116C>T	uc002vbp.2	+	5	1114	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	288							nucleic acid binding|zinc ion binding			ovary(3)	3						GCTTGAAATTCCATGAACGCA	0.358													6	21					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209188919	209188919	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:209188919C>T	uc002vcz.2	+	18	2402	c.2244C>T	c.(2242-2244)ACC>ACT	p.T748T	PIKFYVE_uc010fun.1_Silent_p.T429T|PIKFYVE_uc002vcy.1_Silent_p.T692T	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	748					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TTCGACCCACCTTGGTTCTTG	0.373													19	37					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210560569	210560569	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:210560569C>T	uc002vde.1	+	7	3923	c.3675C>T	c.(3673-3675)ATC>ATT	p.I1225I	MAP2_uc002vdc.1_Silent_p.I1225I|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.I1221I	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1225					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	ATGAAACGATCGTATCTGAAC	0.453													4	33					0	0	1	0	0
UNC80	285175	broad.mit.edu	37	2	210642244	210642244	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:210642244C>T	uc010zjc.1	+	4	641	c.561C>T	c.(559-561)CTC>CTT	p.L187L	UNC80_uc002vdj.1_Silent_p.L187L	NM_032504	NP_115893	Q8N2C7	UNC80_HUMAN	chromosome 2 open reading frame 21 isoform 1	187						integral to membrane					0						CTGTGGAGCTCTTCGTGTTTC	0.507													22	51					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211179661	211179661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:211179661C>T	uc002vec.2	-	1	235	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	36					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TCAATTTTTTCTTCTTTGGGT	0.328													44	121					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212426674	212426674	+	Missense_Mutation	SNP	T	G	G	rs112196222		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:212426674T>G	uc002veg.1	-	20	2539	c.2441A>C	c.(2440-2442)AAC>ACC	p.N814T	ERBB4_uc002veh.1_Missense_Mutation_p.N814T|ERBB4_uc010zji.1_Missense_Mutation_p.N804T|ERBB4_uc010zjj.1_Missense_Mutation_p.N804T|ERBB4_uc010fut.1_Missense_Mutation_p.N814T	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	814	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGATCCAATGTTATCCTTGTG	0.453										TSP Lung(8;0.080)			22	74					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212812235	212812235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:212812235C>T	uc002veg.1	-	3	439	c.341G>A	c.(340-342)CGA>CAA	p.R114Q	ERBB4_uc002veh.1_Missense_Mutation_p.R114Q|ERBB4_uc010zji.1_Missense_Mutation_p.R114Q|ERBB4_uc010zjj.1_Missense_Mutation_p.R114Q|ERBB4_uc010fut.1_Missense_Mutation_p.R114Q	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	114	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAAGGCATATCGATCCTCATA	0.378										TSP Lung(8;0.080)			12	25					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213878550	213878550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:213878550C>T	uc002vem.2	-	7	990	c.821G>A	c.(820-822)GGA>GAA	p.G274E	IKZF2_uc010fuu.2_Missense_Mutation_p.G129E|IKZF2_uc002vej.2_Missense_Mutation_p.G221E|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Intron|IKZF2_uc002vel.2_Missense_Mutation_p.G195E|IKZF2_uc010fuw.2_Missense_Mutation_p.G48E|IKZF2_uc010fux.2_Missense_Mutation_p.G48E|IKZF2_uc010fuy.2_Missense_Mutation_p.G202E|IKZF2_uc002ven.2_Missense_Mutation_p.G248E|IKZF2_uc002vei.2_Missense_Mutation_p.G52E	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	274					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		TTTACGTTTTCCCATATTCCC	0.403													20	38					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215813426	215813426	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:215813426A>G	uc002vew.2	-	47	7218	c.6998T>C	c.(6997-6999)GTT>GCT	p.V2333A	ABCA12_uc002vev.2_Missense_Mutation_p.V2015A|ABCA12_uc010zjn.1_Missense_Mutation_p.V1260A	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2333	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ACAGTAGCCAACTAATGAGCT	0.403													7	23					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215818600	215818600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:215818600C>T	uc002vew.2	-	44	6845	c.6625G>A	c.(6625-6627)GAA>AAA	p.E2209K	ABCA12_uc002vev.2_Missense_Mutation_p.E1891K|ABCA12_uc010zjn.1_Missense_Mutation_p.E1136K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2209					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ATCAGGGATTCGTTGATTAAG	0.348													6	17					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215884085	215884085	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:215884085G>T	uc002vew.2	-	13	1852	c.1632C>A	c.(1630-1632)AAC>AAA	p.N544K	ABCA12_uc002vev.2_Missense_Mutation_p.N226K|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	544					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CATCTGCACTGTTATTGACAT	0.388													22	18					2.32416e-17	2.34826e-17	1	1	0
ABCA12	26154	broad.mit.edu	37	2	215890473	215890473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:215890473C>T	uc002vew.2	-	11	1431	c.1211G>A	c.(1210-1212)CGA>CAA	p.R404Q	ABCA12_uc002vev.2_Missense_Mutation_p.R86Q|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	404					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTTTTTAAATCGTATTGTGGA	0.343													13	25					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216226319	216226319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:216226319G>A	uc002vfa.2	-	46	7659	c.7393C>T	c.(7393-7395)CCT>TCT	p.P2465S	FN1_uc002vfb.2_Missense_Mutation_p.P2253S|FN1_uc002vfc.2_Missense_Mutation_p.P2228S|FN1_uc002vfd.2_Missense_Mutation_p.P2409S|FN1_uc002vfe.2_Missense_Mutation_p.P2343S|FN1_uc002vff.2_Missense_Mutation_p.P2318S|FN1_uc002vfg.2_Missense_Mutation_p.P2284S|FN1_uc002vfh.2_Missense_Mutation_p.P2164S|FN1_uc002vfi.2_Missense_Mutation_p.P2434S|FN1_uc002vfj.2_Missense_Mutation_p.P2255S|FN1_uc002vez.2_Missense_Mutation_p.P628S|FN1_uc010zjp.1_Missense_Mutation_p.P1002S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	2374					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACATCTAAAGGCATGAAGCAC	0.383													36	82					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218696248	218696248	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:218696248G>A	uc002vgt.2	-	20	3326	c.2928C>T	c.(2926-2928)GCC>GCT	p.A976A	TNS1_uc002vgr.2_Silent_p.A976A|TNS1_uc002vgs.2_Silent_p.A976A|TNS1_uc010zjv.1_Silent_p.A976A	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	976						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GGGGTGTCTTGGCCAGACCCG	0.647													8	8					0	0	1	0	0
PNKD	25953	broad.mit.edu	37	2	219204827	219204827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:219204827C>T	uc002vhn.2	+	4	572	c.428C>T	c.(427-429)GCT>GTT	p.A143V	PNKD_uc002vhq.2_Missense_Mutation_p.A119V	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	143						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCCAGCTGGCTGTGGCTGTG	0.637													25	54					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219251363	219251363	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:219251363C>T	uc002vhv.2	+	5	739	c.399C>T	c.(397-399)CCC>CCT	p.P133P	SLC11A1_uc010zkb.1_Missense_Mutation_p.P158L|SLC11A1_uc010fvp.1_Silent_p.P133P|SLC11A1_uc010fvq.1_Silent_p.P66P|SLC11A1_uc010zkc.1_Silent_p.P66P|SLC11A1_uc002vhu.1_5'UTR|SLC11A1_uc002vhw.2_Silent_p.P15P|SLC11A1_uc010fvr.2_5'UTR	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	133	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CATAGGTGCCCCGCACCGTCC	0.537													6	11					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219296840	219296840	+	Silent	SNP	C	T	T	rs145595044	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:219296840C>T	uc002via.2	+	12	1340	c.1275C>T	c.(1273-1275)GAC>GAT	p.D425D	VIL1_uc010zke.1_Silent_p.D114D|VIL1_uc002vib.2_Silent_p.D425D	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	425	Gelsolin-like 4.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATGGGGGCGACTGCTACCTGC	0.592													23	14					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219873831	219873832	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:219873831_219873832CC>TT	uc002vjl.1	-	29	4695_4696	c.4611_4612GG>AA	c.(4609-4614)CAGGAG>CAAAAG	p.E1538K		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1538	Potential.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCCTTCCACTCCTGCAGCTCCT	0.559													15	37					0	0	1	0	0
IHH	3549	broad.mit.edu	37	2	219920526	219920526	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:219920526C>T	uc002vjo.1	-	3	639	c.639G>A	c.(637-639)GAG>GAA	p.E213E		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	213					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCGCCCCACTCTCCAGGCGTA	0.652													6	22					0	0	1	0	0
ATG9A	79065	broad.mit.edu	37	2	220089208	220089208	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:220089208G>A	uc002vke.1	-	8	1071	c.885C>T	c.(883-885)ATC>ATT	p.I295I	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Silent_p.I295I	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	295	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAAGTTAGCGATGCCAATCC	0.587													4	14					0	0	1	0	0
DES	1674	broad.mit.edu	37	2	220285375	220285375	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:220285375G>A	uc002vll.2	+	4	980	c.894G>A	c.(892-894)TCG>TCA	p.S298S		NM_001927	NP_001918	P17661	DESM_HUMAN	desmin	298	Rod.|Coil 2B.				cytoskeleton organization|muscle filament sliding|regulation of heart contraction	cytosol|Z disc	protein binding|structural constituent of cytoskeleton			central_nervous_system(2)	2		Renal(207;0.0183)		Epithelial(149;5.25e-07)|all cancers(144;0.000103)|Lung(261;0.00533)|LUSC - Lung squamous cell carcinoma(224;0.008)		GGTACAAGTCGAAGGTGGGTG	0.602													10	44					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220354280	220354280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:220354280G>A	uc010fwg.2	+	36	8540	c.8540G>A	c.(8539-8541)CGA>CAA	p.R2847Q		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2847	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		ACCCCTCCACGAAGACACAGG	0.662													12	39					0	0	1	0	0
STK11IP	114790	broad.mit.edu	37	2	220466087	220466087	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:220466087C>T	uc002vml.2	+	3	268	c.225C>T	c.(223-225)TCC>TCT	p.S75S	STK11IP_uc010zlj.1_Silent_p.S64S|STK11IP_uc010zlk.1_Silent_p.S64S|STK11IP_uc010zll.1_Silent_p.S64S|STK11IP_uc002vmm.1_Silent_p.S64S	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	75					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTCTGCCCTCCCATCCTGCCG	0.567													8	26					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222347194	222347194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:222347194G>A	uc002vmq.2	-	5	1238	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	EPHA4_uc002vmr.2_Missense_Mutation_p.S399F|EPHA4_uc010zlm.1_Missense_Mutation_p.S340F|EPHA4_uc010zln.1_Missense_Mutation_p.S399F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	399	Extracellular (Potential).|Fibronectin type-III 1.		S -> F (in a metastatic melanoma sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.S399F(1)		lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GTCAGTGATGGAGACTTTGGT	0.502													54	106					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222347308	222347308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:222347308G>A	uc002vmq.2	-	5	1124	c.1082C>T	c.(1081-1083)TCC>TTC	p.S361F	EPHA4_uc002vmr.2_Missense_Mutation_p.S361F|EPHA4_uc010zlm.1_Missense_Mutation_p.S302F|EPHA4_uc010zln.1_Missense_Mutation_p.S361F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	361	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CACATTATAGGAAATGTCCTG	0.517													51	65					0	0	1	0	0
ACSL3	2181	broad.mit.edu	37	2	223773638	223773638	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:223773638G>T	uc002vni.2	+	4	599	c.148G>T	c.(148-150)GAA>TAA	p.E50*	ACSL3_uc002vnj.2_Nonsense_Mutation_p.E50*	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	50	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	GTCAAGACAAGAAAAATCAAA	0.299			T	ETV1	prostate								15	29					2.32078e-09	2.33473e-09	1	1	0
COL4A4	1286	broad.mit.edu	37	2	227924863	227924863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:227924863G>A	uc010zlt.1	-	27	2807	c.2153C>T	c.(2152-2154)CCA>CTA	p.P718L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	718	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGGTGGACCTGGTATTTCCGC	0.443													20	24					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228124588	228124588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228124588C>T	uc002vom.1	+	19	1271	c.1109C>T	c.(1108-1110)CCA>CTA	p.P370L	COL4A3_uc002von.1_Missense_Mutation_p.P370L|COL4A3_uc002voo.1_Missense_Mutation_p.P370L|COL4A3_uc002vop.1_Missense_Mutation_p.P370L|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	370	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GCTCGTGGCCCACAAGGTAAG	0.423													21	36					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228147231	228147231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228147231G>A	uc002vom.1	+	32	2801	c.2639G>A	c.(2638-2640)GGA>GAA	p.G880E	COL4A3_uc002von.1_Missense_Mutation_p.G880E|COL4A3_uc002voo.1_Missense_Mutation_p.G880E|COL4A3_uc002vop.1_Missense_Mutation_p.G880E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	880	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGAAATCCGGGAATTTTAGGG	0.433													13	19					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881455	228881455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228881455C>T	uc002vpq.2	-	7	4162	c.4115G>A	c.(4114-4116)AGG>AAG	p.R1372K	SPHKAP_uc002vpp.2_Missense_Mutation_p.R1372K|SPHKAP_uc010zlx.1_Missense_Mutation_p.R1372K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1372						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGAGTCTTTCCTCGGGCAATC	0.478													16	20					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882684	228882684	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228882684C>T	uc002vpq.2	-	7	2933	c.2886G>A	c.(2884-2886)TGG>TGA	p.W962*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.W962*|SPHKAP_uc010zlx.1_Nonsense_Mutation_p.W962*	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	962						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCCCTCTTTTCCATGCACAAA	0.512													23	32					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882884	228882884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228882884C>T	uc002vpq.2	-	7	2733	c.2686G>A	c.(2686-2688)GAA>AAA	p.E896K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E896K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E896K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	896						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACTTGAACTTCGTTGATGCGA	0.502													34	62					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883992	228883992	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228883992C>T	uc002vpq.2	-	7	1625	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	SPHKAP_uc002vpp.2_Silent_p.S526S|SPHKAP_uc010zlx.1_Silent_p.S526S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	526						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGGAAAGTTCGAGACCACTT	0.502													15	11					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884529	228884529	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228884529G>A	uc002vpq.2	-	7	1088	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	SPHKAP_uc002vpp.2_Silent_p.S347S|SPHKAP_uc010zlx.1_Silent_p.S347S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	347						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TATCCATCATGGAGAAATAAG	0.423													14	44					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884786	228884786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228884786C>T	uc002vpq.2	-	7	831	c.784G>A	c.(784-786)GAA>AAA	p.E262K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E262K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E262K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	262						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGCCACTTTTCCTTGTTGCAA	0.378													40	44					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886490	228886490	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:228886490C>A	uc002vpq.2	-	6	681	c.634G>T	c.(634-636)GAA>TAA	p.E212*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.E212*|SPHKAP_uc010zlx.1_Nonsense_Mutation_p.E212*	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	212						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGAAAGTCTTCCTCGATTGAA	0.478													20	24					8.00594e-06	8.02991e-06	1	1	0
TRIP12	9320	broad.mit.edu	37	2	230643656	230643656	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:230643656C>A	uc002vpw.1	-	34	5029	c.4920G>T	c.(4918-4920)CAG>CAT	p.Q1640H	TRIP12_uc002vpx.1_Missense_Mutation_p.Q1688H|TRIP12_uc002vpy.1_Missense_Mutation_p.Q1370H	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1640					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TCTGTAGTTCCTGAGATACAA	0.398													4	126					0.150653	0.150682	1	1	0
SP140	11262	broad.mit.edu	37	2	231102957	231102957	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:231102957C>T	uc002vql.2	+	3	382	c.267C>T	c.(265-267)GTC>GTT	p.V89V	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Silent_p.V89V|SP140_uc002vqk.2_Silent_p.V89V|SP140_uc002vqn.2_Silent_p.V89V|SP140_uc002vqm.2_Silent_p.V89V|SP140_uc010fxl.2_Silent_p.V89V	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	89	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAAACCTGGTCCCAGTGACAA	0.378													8	28					0	0	1	0	0
SP100	6672	broad.mit.edu	37	2	231314937	231314937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:231314937G>A	uc002vqt.2	+	8	928	c.787G>A	c.(787-789)GAG>AAG	p.E263K	SP100_uc002vqs.2_Missense_Mutation_p.E263K|SP100_uc002vqu.1_Missense_Mutation_p.E263K|SP100_uc010zmb.1_Missense_Mutation_p.E263K|SP100_uc002vqq.1_Missense_Mutation_p.E263K|SP100_uc002vqr.1_Missense_Mutation_p.E238K|SP100_uc010zmc.1_Missense_Mutation_p.E238K|SP100_uc002vqv.1_Missense_Mutation_p.E227K	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	263					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TGCTGGAAGGGAGATGCCCTG	0.423													23	46					0	0	1	0	0
ITM2C	81618	broad.mit.edu	37	2	231741646	231741646	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:231741646C>T	uc002vqz.2	+	4	645	c.525C>T	c.(523-525)CCC>CCT	p.P175P	ITM2C_uc002vra.2_Silent_p.P128P|ITM2C_uc002vrb.2_Intron|ITM2C_uc002vrc.2_Silent_p.P64P|ITM2C_uc002vrd.2_Intron	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	175	BRICHOS.				negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		TTGTGCTGCCCCCTCGCAACT	0.582													22	65					0	0	1	0	0
GPR55	9290	broad.mit.edu	37	2	231775372	231775372	+	Silent	SNP	G	A	A	rs144507378		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:231775372G>A	uc002vrg.2	-	2	499	c.306C>T	c.(304-306)TTC>TTT	p.F102F	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Silent_p.F102F	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	102	Helical; Name=3; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		ACATGCTGACGAAGTAAAGGC	0.592													14	21					0	0	1	0	0
NCL	4691	broad.mit.edu	37	2	232320841	232320841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:232320841G>A	uc002vru.2	-	12	1853	c.1712C>T	c.(1711-1713)TCC>TTC	p.S571F	SNORA75_uc002vrv.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	571					angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		CAGAGTTTTGGATGGCTCTGG	0.433													10	23					0	0	1	0	0
ALPI	248	broad.mit.edu	37	2	233322373	233322373	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:233322373G>A	uc002vst.3	+	6	824	c.747G>A	c.(745-747)GGG>GGA	p.G249G	ALPI_uc002vsu.3_Silent_p.G160G	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	249					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGCTGGACGGGAAGAACCTGG	0.627													10	35					0	0	1	0	0
NGEF	25791	broad.mit.edu	37	2	233839559	233839559	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:233839559C>T	uc002vts.2	-	2	290	c.42G>A	c.(40-42)AGG>AGA	p.R14R		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	14	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TTGCTGATTTCCTCCGGGTCT	0.458													25	59					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234346084	234346084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:234346084C>T	uc002vui.1	+	8	893	c.881C>T	c.(880-882)TCA>TTA	p.S294L	DGKD_uc002vuj.1_Missense_Mutation_p.S250L|DGKD_uc010fyh.1_Missense_Mutation_p.S161L|DGKD_uc010fyi.1_5'Flank|DGKD_uc002vuk.1_Missense_Mutation_p.S161L	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	294					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TGCAAAGTGTCAGTCATCCCA	0.552													6	14					0	0	1	0	0
DGKD	8527	broad.mit.edu	37	2	234355427	234355427	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:234355427C>T	uc002vui.1	+	12	1416	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	DGKD_uc002vuj.1_Silent_p.F424F|DGKD_uc010fyh.1_Silent_p.F335F|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	468					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	CCGAAGACTTCAGCGAGGATT	0.597													26	16					0	0	1	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545403	234545403	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:234545403A>G	uc002vur.2	+	1	281	c.235A>G	c.(235-237)ACC>GCC	p.T79A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.T79A	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	79					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		GACTTACTCAACCTCGTACAC	0.453													12	53					0	0	1	0	0
UGT1A6	54578	broad.mit.edu	37	2	234602022	234602022	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:234602022C>T	uc002vuv.3	+	1	511	c.372C>T	c.(370-372)ATC>ATT	p.I124I	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Silent_p.I124I	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	124					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		TGTACTTCATCAACTGCCAGA	0.468													9	27					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237240144	237240144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:237240144C>T	uc002vvz.1	-	18	2413	c.2231G>A	c.(2230-2232)GGA>GAA	p.G744E	IQCA1_uc002vwb.2_Missense_Mutation_p.G752E|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.G703E	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	744							ATP binding			ovary(1)	1						GACTATATGTCCTTGGGTGAA	0.493													15	56					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237285828	237285828	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:237285828C>T	uc002vvz.1	-	13	1661	c.1479G>A	c.(1477-1479)AGG>AGA	p.R493R	IQCA1_uc002vwb.2_Silent_p.R501R|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.R452R	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	493							ATP binding			ovary(1)	1						ACTCGATGGTCCTGGGGAGAA	0.448													25	22					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489334	237489334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:237489334G>A	uc010fyq.2	+	3	456	c.226G>A	c.(226-228)GGC>AGC	p.G76S	CXCR7_uc002vwd.2_Missense_Mutation_p.G76S	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	76	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		CAAGACCACAGGCTATGACAC	0.537													14	15					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238249665	238249665	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238249665G>A	uc002vwl.2	-	38	8179	c.7894C>T	c.(7894-7896)CTG>TTG	p.L2632L	COL6A3_uc002vwo.2_Silent_p.L2426L|COL6A3_uc010znj.1_Silent_p.L2025L|COL6A3_uc002vwj.2_Silent_p.L13L	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2632	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AACTGGAACAGGGTGGTGGTC	0.552													51	108					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238258824	238258824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238258824C>T	uc002vwl.2	-	28	7130	c.6845G>A	c.(6844-6846)GGA>GAA	p.G2282E	COL6A3_uc002vwo.2_Missense_Mutation_p.G2076E|COL6A3_uc010znj.1_Missense_Mutation_p.G1675E|COL6A3_uc002vwp.1_Missense_Mutation_p.G103E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2282	Triple-helical region.|Collagen-like 4.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCCGATTCCTCCTTTTGGTCC	0.607													8	32					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238287747	238287747	+	Missense_Mutation	SNP	G	A	A	rs137923508		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238287747G>A	uc002vwl.2	-	6	2314	c.2029C>T	c.(2029-2031)CGT>TGT	p.R677C	COL6A3_uc002vwo.2_Missense_Mutation_p.R471C|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.R471C|COL6A3_uc002vwr.2_Missense_Mutation_p.R270C|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	677	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AAACCAACACGAATATTGTCA	0.413													9	24					0	0	1	0	0
MLPH	79083	broad.mit.edu	37	2	238449159	238449159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238449159C>T	uc002vwt.2	+	10	1500	c.1273C>T	c.(1273-1275)CCC>TCC	p.P425S	MLPH_uc002vws.2_Missense_Mutation_p.P282S|MLPH_uc010fyt.1_Missense_Mutation_p.P397S|MLPH_uc002vwu.2_Missense_Mutation_p.P397S|MLPH_uc002vwv.2_Missense_Mutation_p.P357S|MLPH_uc002vww.2_Missense_Mutation_p.P373S|MLPH_uc002vwx.2_Missense_Mutation_p.P281S|MLPH_uc010fyu.2_Missense_Mutation_p.P177S	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	425	Potential.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		TGGGCCTCTCCCCCAGGCGGA	0.632													3	9					0	0	1	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238657942	238657942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238657942C>T	uc002vxe.2	+	6	678	c.386C>T	c.(385-387)ACC>ATC	p.T129I	LRRFIP1_uc002vxc.2_Missense_Mutation_p.T257I|LRRFIP1_uc010znm.1_Missense_Mutation_p.T97I|LRRFIP1_uc002vxd.2_Missense_Mutation_p.T129I|LRRFIP1_uc002vxf.2_Missense_Mutation_p.T97I	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	129	Potential.				negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		TCCATCGACACCGAGGCATCC	0.498													10	18					0	0	1	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238672098	238672098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:238672098C>T	uc002vxe.2	+	11	2034	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	LRRFIP1_uc002vxc.2_Intron|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Missense_Mutation_p.S557F|LRRFIP1_uc002vxf.2_Missense_Mutation_p.S525F	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	581	DNA-binding.|Lys-rich.				negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		aagaaaaaATCCCCAGTACCC	0.323													10	18					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239176773	239176773	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:239176773C>T	uc002vyc.2	-	8	1128	c.891G>A	c.(889-891)AAG>AAA	p.K297K	PER2_uc010znv.1_Silent_p.K297K|PER2_uc010znw.1_Silent_p.K297K|PER2_uc010fyx.1_Silent_p.K297K	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	297					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GGTCCCGCACCTTGACCAGGT	0.572													11	25					0	0	1	0	0
OR6B2	389090	broad.mit.edu	37	2	240969754	240969754	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:240969754G>A	uc002vyr.2	-	2	139	c.93C>T	c.(91-93)TTC>TTT	p.F31F	OR6B2_uc010zoc.1_Silent_p.F31F	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		AGGTGAGCAGGAAGAGGAGGA	0.587													11	96					0	0	1	0	0
OR6B3	150681	broad.mit.edu	37	2	240985397	240985397	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:240985397G>A	uc010zoe.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		AGGTGAGCAGGAAGAGGAGGA	0.597													14	32					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241706377	241706377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:241706377C>T	uc002vzy.2	-	18	1758	c.1612G>A	c.(1612-1614)GAG>AAG	p.E538K	KIF1A_uc010fzk.2_Missense_Mutation_p.E547K|KIF1A_uc002vzz.1_Missense_Mutation_p.E547K	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	538	FHA.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CAGTGCTCCTCCTTGATGAAG	0.647													5	7					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241813430	241813430	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:241813430C>T	uc002waa.3	+	6	752	c.631C>T	c.(631-633)CTG>TTG	p.L211L	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	211					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CCAGAAGGCCCTGAACGCCCC	0.632													13	67					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242065957	242065957	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:242065957G>A	uc002wao.1	-	10	2465	c.2373C>T	c.(2371-2373)GTC>GTT	p.V791V	PASK_uc010zol.1_Silent_p.V605V|PASK_uc010zom.1_Silent_p.V756V|PASK_uc010fzl.1_Silent_p.V791V|PASK_uc010zon.1_Silent_p.V572V|PASK_uc002wap.2_Silent_p.V334V|PASK_uc002waq.2_Silent_p.V791V	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	791					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		TGTCATCCAGGACACACGACC	0.567													13	41					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814492	242814492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:242814492C>T	uc010fzu.1	+	2	808	c.785C>T	c.(784-786)CCG>CTG	p.P262L		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	262						integral to membrane				ovary(1)	1						AAAGGCTTCCCGGTGGCCATT	0.652													10	37					0	0	1	0	0
SNPH	9751	broad.mit.edu	37	20	1286066	1286066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:1286066C>T	uc002wes.2	+	6	1089	c.853C>T	c.(853-855)CCC>TCC	p.P285S	SNPH_uc002wet.2_Missense_Mutation_p.P329S	NM_014723	NP_055538	O15079	SNPH_HUMAN	syntaphilin	285					synaptic vesicle docking involved in exocytosis	cell junction|integral to membrane|synapse|synaptosome	syntaxin-1 binding			ovary(2)	2						CGGCCTGGGCCCCCGCTTCCC	0.657													10	46					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1616239	1616239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:1616239G>A	uc002wfm.1	-	4	820	c.755C>T	c.(754-756)CCC>CTC	p.P252L	SIRPG_uc002wfn.1_Intron|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	252	Extracellular (Potential).|Ig-like C1-type 2.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						CTCCAAGGTGGGTGGAACTGA	0.557													29	29					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2293603	2293603	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:2293603C>T	uc002wfx.3	+	5	697	c.600C>T	c.(598-600)CGC>CGT	p.R200R		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	200					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGAATTTCCGCCGTGACGCTG	0.463													17	87					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2597926	2597926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:2597926C>T	uc002wgf.1	+	16	2164	c.2149C>T	c.(2149-2151)CTC>TTC	p.L717F	TMC2_uc002wgg.1_Missense_Mutation_p.L701F	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	717	Extracellular (Potential).					integral to membrane				ovary(3)	3						CATCATGTCCCTCCCACCCTC	0.637													10	39					0	0	1	0	0
CPXM1	56265	broad.mit.edu	37	20	2776459	2776459	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:2776459G>A	uc002wgu.2	-	11	1570	c.1506C>T	c.(1504-1506)CTC>CTT	p.L502L	CPXM1_uc010gas.2_Intron	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	502					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						AGGACACCACGAGCTCACCCC	0.607													22	73					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3529819	3529819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:3529819C>T	uc002wim.2	+	6	1036	c.946C>T	c.(946-948)CCT>TCT	p.P316S	ATRN_uc002wil.2_Missense_Mutation_p.P316S	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	316	Extracellular (Potential).				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						TTTATTAGGTCCTGGATGTTC	0.333													31	34					0	0	1	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3677342	3677342	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:3677342G>A	uc002wja.2	-	10	2574	c.2574C>T	c.(2572-2574)TCC>TCT	p.S858S	SIGLEC1_uc002wiz.3_Silent_p.S858S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	858	Ig-like C2-type 8.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CTAACTTCAGGGAGTTGGCCT	0.592													27	73					0	0	1	0	0
PRND	23627	broad.mit.edu	37	20	4705644	4705644	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:4705644G>A	uc002wkz.2	+	2	518	c.447G>A	c.(445-447)TTG>TTA	p.L149L		NM_012409	NP_036541	Q9UKY0	PRND_HUMAN	prion-like protein doppel preproprotein	149	Globular.		L -> S.		protein homooligomerization	anchored to membrane|plasma membrane					0						AGTTTTGGTTGGAGAGGGGCG	0.597													23	22					0	0	1	0	0
SLC23A2	9962	broad.mit.edu	37	20	4848512	4848512	+	Silent	SNP	G	A	A	rs72552221	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:4848512G>A	uc002wlg.1	-	13	1635	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	SLC23A2_uc010zqr.1_Silent_p.F305F|SLC23A2_uc002wlh.1_Silent_p.F420F	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	420				GIFVEGL -> YVPEKTS (in Ref. 10).	L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GGCCTTCCACGAAAATTCCCC	0.403													21	29					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5283061	5283061	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:5283061C>T	uc010zqw.1	-	2	780	c.780G>A	c.(778-780)ACG>ACA	p.T260T	PROKR2_uc010zqx.1_Silent_p.T260T|PROKR2_uc010zqy.1_Silent_p.T260T	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	260	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAATCTGCTCCGTCTGGAACC	0.607										HNSCC(71;0.22)			21	20					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903689	5903689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:5903689C>T	uc002wmg.2	+	4	1205	c.899C>T	c.(898-900)CCC>CTC	p.P300L	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	300						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GGGAGTCTTCCCTCTGAGGAA	0.587													13	16					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5904101	5904101	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:5904101G>A	uc002wmg.2	+	4	1617	c.1311G>A	c.(1309-1311)GAG>GAA	p.E437E	CHGB_uc010zqz.1_Silent_p.E120E	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	437						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCAGAGAAGAGAAAAGGTTCT	0.542													19	101					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6060173	6060173	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:6060173C>T	uc002wmr.2	-	14	2559	c.1770G>A	c.(1768-1770)TTG>TTA	p.L590L	FERMT1_uc002wmq.2_Silent_p.L143L|FERMT1_uc010gbt.2_Silent_p.L333L	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	590	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						CAATTTTAATCAACCTGTTAT	0.363													29	63					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6077561	6077561	+	Silent	SNP	C	T	T	rs34569233	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:6077561C>T	uc002wmr.2	-	8	1866	c.1077G>A	c.(1075-1077)GCG>GCA	p.A359A	FERMT1_uc002wmq.2_5'Flank|FERMT1_uc010gbt.2_Silent_p.A102A|FERMT1_uc002wms.2_Silent_p.A359A|FERMT1_uc002wmt.2_Silent_p.A102A	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	359	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						AAAGGCTGTCCGCTTTTCCAC	0.403													36	146					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6078200	6078200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:6078200C>T	uc002wmr.2	-	7	1717	c.928G>A	c.(928-930)GAA>AAA	p.E310K	FERMT1_uc010gbt.2_Missense_Mutation_p.E53K|FERMT1_uc002wms.2_Missense_Mutation_p.E310K|FERMT1_uc002wmt.2_Missense_Mutation_p.E53K	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	310	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						AACATTTCTTCCTCTGTGCAA	0.418													9	59					0	0	1	0	0
FERMT1	55612	broad.mit.edu	37	20	6088216	6088216	+	Missense_Mutation	SNP	C	T	T	rs144791466		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:6088216C>T	uc002wmr.2	-	6	1601	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	FERMT1_uc010gbt.2_Missense_Mutation_p.R14Q|FERMT1_uc002wms.2_Missense_Mutation_p.R271Q|FERMT1_uc002wmt.2_Missense_Mutation_p.R14Q	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	271	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						ATATTTAAATCGTAAGAGCAG	0.373													5	27					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8862399	8862399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:8862399C>T	uc002wnb.2	+	32	3557	c.3554C>T	c.(3553-3555)TCC>TTC	p.S1185F	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1185					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GCCCCTCTCTCCCTGTCCTCA	0.493													46	142					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9434098	9434098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:9434098G>A	uc002wnf.2	+	31	3085	c.2949G>A	c.(2947-2949)ATG>ATA	p.M983I	PLCB4_uc010gbw.1_Missense_Mutation_p.M983I|PLCB4_uc010gbx.2_Missense_Mutation_p.M995I|PLCB4_uc002wne.2_Missense_Mutation_p.M983I|PLCB4_uc002wnh.2_Missense_Mutation_p.M830I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	983					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGAAGGCAATGAAGAAGAAGG	0.388													17	20					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9438107	9438107	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:9438107C>T	uc002wnf.2	+	32	3143	c.3007C>T	c.(3007-3009)CAG>TAG	p.Q1003*	PLCB4_uc010gbw.1_Nonsense_Mutation_p.Q1003*|PLCB4_uc010gbx.2_Nonsense_Mutation_p.Q1015*|PLCB4_uc002wne.2_Nonsense_Mutation_p.Q1003*|PLCB4_uc002wnh.2_Nonsense_Mutation_p.Q850*	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1003					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AATCAAAATTCAGACGCTGAC	0.353													26	33					0	0	1	0	0
C20orf103	24141	broad.mit.edu	37	20	9510454	9510454	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:9510454A>G	uc002wni.1	+	6	1059	c.830A>G	c.(829-831)AAG>AGG	p.K277R	C20orf103_uc010zrc.1_Missense_Mutation_p.K233R	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	277	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			TCCCAGTATAAGCACATGGGC	0.522													16	74					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9538327	9538327	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:9538327G>A	uc002wnl.2	-	8	2216	c.1671C>T	c.(1669-1671)TCC>TCT	p.S557S	PAK7_uc002wnk.2_Silent_p.S557S|PAK7_uc002wnj.2_Silent_p.S557S|PAK7_uc010gby.1_Silent_p.S557S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	557	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TATGAAGGTAGGAGAGAGCTC	0.438													19	26					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	15967379	15967379	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:15967379G>A	uc002wou.2	+	14	1257	c.993G>A	c.(991-993)GAG>GAA	p.E331E	MACROD2_uc002wot.2_Silent_p.E331E|MACROD2_uc002woz.2_Silent_p.E96E|MACROD2_uc002wpb.2_Silent_p.E96E|MACROD2_uc002wpd.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	331	Glu-rich.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				CAGGACAAGAGAATGATTCAA	0.333													8	24					0	0	1	0	0
RRBP1	6238	broad.mit.edu	37	20	17623740	17623740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:17623740G>A	uc002wpv.1	-	5	1000	c.646C>T	c.(646-648)CCC>TCC	p.P216S	RRBP1_uc002wpu.2_5'UTR|RRBP1_uc002wpw.1_Missense_Mutation_p.P216S|RRBP1_uc010gcl.1_5'UTR	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	649	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						GTCTTGTAGGGGAGGTAGAGA	0.602													18	22					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19261652	19261652	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:19261652G>A	uc002wrl.2	+	2	389	c.192G>A	c.(190-192)GCG>GCA	p.A64A	LOC100130264_uc010zsd.1_Intron	NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	64	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGATGATGGCGAGGAAGCTGA	0.522													20	15					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566125	19566125	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:19566125C>T	uc002wrl.2	+	6	746	c.549C>T	c.(547-549)ATC>ATT	p.I183I		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	183	Alpha-1.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TTGGCACCATCGTGGGCTCAG	0.542													78	123					0	0	1	0	0
PAX1	5075	broad.mit.edu	37	20	21689273	21689273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:21689273C>T	uc002wsj.2	+	3	1048	c.994C>T	c.(994-996)CCC>TCC	p.P332S	PAX1_uc010zsl.1_Missense_Mutation_p.P332S|PAX1_uc010zsm.1_Missense_Mutation_p.P308S	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	332					regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						CACGGCCTTCCCCGCCACCCC	0.602													30	81					0	0	1	0	0
FOXA2	3170	broad.mit.edu	37	20	22563527	22563527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:22563527G>A	uc002wsn.2	-	3	525	c.335C>T	c.(334-336)CCG>CTG	p.P112L	FOXA2_uc002wsm.2_Missense_Mutation_p.P118L	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	112	Nuclear localization signal (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					CCCCCCGAGCGGGCTCAGGCT	0.786													8	11					0	0	1	0	0
THBD	7056	broad.mit.edu	37	20	23029960	23029960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23029960G>A	uc002wss.2	-	1	342	c.182C>T	c.(181-183)ACA>ATA	p.T61I	THBD_uc002wst.1_5'Flank|THBD_uc002wsu.1_Missense_Mutation_p.T2I	NM_000361	NP_000352	P07204	TRBM_HUMAN	thrombomodulin precursor	61	C-type lectin.|Extracellular (Potential).				blood coagulation|leukocyte migration|negative regulation of fibrinolysis|negative regulation of platelet activation	cell surface|integral to plasma membrane	calcium ion binding|protein binding|transmembrane receptor activity				0	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)				Drotrecogin alfa(DB00055)	GGAGCGCACTGTCATTAGGTG	0.672													4	11					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23065889	23065889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23065889C>T	uc002wsv.2	-	1	1089	c.941G>A	c.(940-942)GGG>GAG	p.G314E		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	314	EGF-like 2.|Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GCACGTGGCCCCCCCACGACA	0.642													13	55					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23066251	23066251	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23066251C>T	uc002wsv.2	-	1	727	c.579G>A	c.(577-579)CTG>CTA	p.L193L		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	193	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CTGGGCCCCCCAGGGCCAGAG	0.642													15	72					0	0	1	0	0
CSTL1	128817	broad.mit.edu	37	20	23420929	23420929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23420929C>T	uc002wte.2	+	2	271	c.25C>T	c.(25-27)CCC>TCC	p.P9S	CSTL1_uc010zsu.1_RNA|CSTL1_uc010zsv.1_RNA	NM_138283	NP_612140	Q9H114	CST1L_HUMAN	cystatin-like 1 precursor	9						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0993)|Lung NSC(19;0.235)					CTGGAGAAACCCCCTGCTGCT	0.552													28	30					0	0	1	0	0
CST11	140880	broad.mit.edu	37	20	23432486	23432486	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23432486C>T	uc002wtf.1	-	2	334	c.300G>A	c.(298-300)ACG>ACA	p.T100T	CST11_uc002wtg.1_Intron	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	100					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					GGACACAGTTCGTGGTCTCTG	0.522													18	51					0	0	1	0	0
CST9	128822	broad.mit.edu	37	20	23584153	23584153	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:23584153C>T	uc002wtl.2	-	2	583	c.474G>A	c.(472-474)GGG>GGA	p.G158G		NM_001008693	NP_001008693	Q5W186	CST9_HUMAN	cystatin 9 precursor	158						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Colorectal(13;0.0993)					GGGCTCACTTCCCTTTGTCCC	0.602													19	16					0	0	1	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524174	24524174	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:24524174C>T	uc002wtw.1	+	2	1074	c.441C>T	c.(439-441)TCC>TCT	p.S147S		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	147	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						ACACCCTGTCCTACGATGTGG	0.547													65	64					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25188027	25188027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:25188027C>T	uc002wuj.2	+	3	550	c.370C>T	c.(370-372)CCC>TCC	p.P124S	ENTPD6_uc010zsy.1_Missense_Mutation_p.P124S|ENTPD6_uc010gdj.1_Missense_Mutation_p.P96S|ENTPD6_uc010zsz.1_Intron|ENTPD6_uc002wum.2_Missense_Mutation_p.P107S|ENTPD6_uc010zta.1_Missense_Mutation_p.P124S|ENTPD6_uc002wun.2_Missense_Mutation_p.P124S|ENTPD6_uc002wuk.2_Missense_Mutation_p.P123S|ENTPD6_uc002wul.2_Missense_Mutation_p.P123S|ENTPD6_uc010ztb.1_Missense_Mutation_p.P96S|ENTPD6_uc010ztc.1_Missense_Mutation_p.P96S|ENTPD6_uc002wuo.2_Intron|ENTPD6_uc010ztd.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	124	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						CACCCGGCCCCCCAGAGGTAC	0.552													9	24					0	0	1	0	0
ASXL1	171023	broad.mit.edu	37	20	31024690	31024690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:31024690C>T	uc002wxs.2	+	12	4601	c.4175C>T	c.(4174-4176)CCC>CTC	p.P1392L	ASXL1_uc010geb.2_Missense_Mutation_p.P1283L	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1392					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GGGCATAGTCCCCTGGAACTG	0.542			F|N|Mis		MDS|CMML								55	64					0	0	1	0	0
DNMT3B	1789	broad.mit.edu	37	20	31395680	31395680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:31395680C>T	uc002wyc.2	+	23	2854	c.2533C>T	c.(2533-2535)CCT>TCT	p.P845S	DNMT3B_uc002wyd.2_Missense_Mutation_p.P825S|DNMT3B_uc002wye.2_Missense_Mutation_p.P762S|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.P720S|DNMT3B_uc010zua.1_Missense_Mutation_p.P686S|DNMT3B_uc002wyf.2_Missense_Mutation_p.P837S|DNMT3B_uc002wyg.2_Missense_Mutation_p.P481S|DNMT3B_uc010geg.2_Missense_Mutation_p.P104L|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	845					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						CCTCTTCGCCCCTCTGAAGGA	0.607													34	69					0	0	1	0	0
E2F1	1869	broad.mit.edu	37	20	32265097	32265097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:32265097C>T	uc002wzu.3	-	6	1020	c.880G>A	c.(880-882)GAT>AAT	p.D294N	NECAB3_uc002wzm.3_5'Flank|NECAB3_uc002wzn.3_5'Flank|NECAB3_uc002wzo.3_5'Flank|NECAB3_uc002wzp.3_5'Flank|NECAB3_uc002wzq.3_5'Flank|NECAB3_uc002wzr.3_5'Flank|NECAB3_uc010geo.2_5'Flank	NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	294	Required for interaction with TRIM28.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						AGGAAAACATCGATCGGGCCT	0.527													11	46					0	0	1	0	0
PIGU	128869	broad.mit.edu	37	20	33222506	33222506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:33222506G>A	uc002xas.2	-	6	642	c.442C>T	c.(442-444)CCT>TCT	p.P148S	PIGU_uc010zul.1_Missense_Mutation_p.P148S|PIGU_uc002xat.2_Missense_Mutation_p.P128S|PIGU_uc010gev.1_RNA	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	148					attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						ATCGTGTAAGGATTTAAGAGA	0.413													12	28					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33577937	33577937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:33577937G>A	uc002xbi.1	+	19	2106	c.2014G>A	c.(2014-2016)GGC>AGC	p.G672S	MIR499_hsa-mir-499|MI0003183_5'Flank	NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	630	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GAATTATGCGGGCTCCTGCTC	0.547													21	86					0	0	1	0	0
MMP24	10893	broad.mit.edu	37	20	33862257	33862257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:33862257G>A	uc002xbu.2	+	9	1786	c.1783G>A	c.(1783-1785)GAT>AAT	p.D595N	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	595	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GACCATCAACGATGTGCCGGG	0.617													28	90					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34025151	34025151	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:34025151C>T	uc002xck.1	-	1	877	c.558G>A	c.(556-558)AAG>AAA	p.K186K	GDF5_uc010gfc.1_Silent_p.K186K|GDF5_uc010zvc.1_Silent_p.K186K	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	186					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			TGTTGCCTCCCTTTCTGTCAG	0.632													21	58					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35064744	35064744	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35064744A>G	uc002xff.2	+	4	1667	c.1232A>G	c.(1231-1233)AAC>AGC	p.N411S	DLGAP4_uc010zvp.1_Missense_Mutation_p.N411S	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	411					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GAGCAGAGCAACCCCCGCAGG	0.687													4	19					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35128791	35128791	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35128791C>T	uc002xff.2	+	10	2715	c.2280C>T	c.(2278-2280)TCC>TCT	p.S760S	DLGAP4_uc010zvp.1_Silent_p.S760S|DLGAP4_uc002xfg.2_Silent_p.S56S|DLGAP4_uc002xfh.2_Silent_p.S224S|DLGAP4_uc002xfi.2_Silent_p.S69S|DLGAP4_uc002xfj.2_Silent_p.S56S	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	763					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GCAACCTCTCCTATGGAGACA	0.667													24	29					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35504603	35504603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35504603C>T	uc002xgg.1	+	1	34	c.26C>T	c.(25-27)ACT>ATT	p.T9I		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	9											0		Myeloproliferative disorder(115;0.00874)				TGGCGTTACACTCGGCTGGTA	0.632													27	82					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35731208	35731208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35731208G>A	uc010zvu.1	-	26	3132	c.3041C>T	c.(3040-3042)CCC>CTC	p.P1014L	C20orf132_uc002xgk.2_Missense_Mutation_p.P636L	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				GCACAGCGAGGGCTCAGGGTC	0.517													42	149					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35776243	35776243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35776243C>T	uc010zvu.1	-	12	1265	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	C20orf132_uc002xgk.2_Missense_Mutation_p.E65K|C20orf132_uc002xgm.2_Missense_Mutation_p.E392K|C20orf132_uc002xgn.2_Missense_Mutation_p.E357K	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	267											0		Myeloproliferative disorder(115;0.00878)				GCCACCTTTTCCTGTGGGTCC	0.527													6	24					0	0	1	0	0
RPN2	6185	broad.mit.edu	37	20	35854136	35854136	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:35854136C>T	uc002xgp.2	+	11	1534	c.1230C>T	c.(1228-1230)AGC>AGT	p.S410S	RPN2_uc002xgo.3_Silent_p.S410S|RPN2_uc010gfw.2_Silent_p.S253S|RPN2_uc002xgq.2_Silent_p.S378S	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	410	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TCGCAGACAGCCACCAGAACT	0.488													21	34					0	0	1	0	0
FAM83D	81610	broad.mit.edu	37	20	37570699	37570699	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:37570699T>C	uc002xjg.2	+	2	712	c.671T>C	c.(670-672)CTG>CCG	p.L224P	FAM83D_uc002xjf.2_Missense_Mutation_p.L224P	NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	194					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				TATATCCTTCTGGACCAGGCT	0.448													31	45					0	0	1	0	0
TOP1	7150	broad.mit.edu	37	20	39729898	39729898	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:39729898C>A	uc002xjl.2	+	13	1459	c.1213C>A	c.(1213-1215)CGG>AGG	p.R405R	uc002xjn.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	405					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	GAAAGAAGTCCGGCATGATAA	0.423			T	NUP98	AML*								27	34					1.50538e-07	1.51244e-07	1	1	0
PLCG1	5335	broad.mit.edu	37	20	39792092	39792092	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:39792092C>T	uc002xjp.1	+	9	985	c.864C>T	c.(862-864)ATC>ATT	p.I288I	PLCG1_uc002xjo.1_Silent_p.I288I|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	288					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TACGAGAGATCGAGGAGCCAT	0.577													15	50					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40050714	40050714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40050714G>A	uc002xka.1	-	31	4739	c.4561C>T	c.(4561-4563)CCA>TCA	p.P1521S		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1521					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GTGGTATCTGGGGGACCTGGA	0.517													18	61					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40714396	40714396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40714396C>T	uc002xkg.2	-	28	4128	c.3944G>A	c.(3943-3945)AGA>AAA	p.R1315K	PTPRT_uc010ggj.2_Missense_Mutation_p.R1334K|PTPRT_uc010ggi.2_Missense_Mutation_p.R518K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1315	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCGGAATATTCTGTGGATGAT	0.577													55	46					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40727061	40727061	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40727061C>T	uc002xkg.2	-	27	4030	c.3846G>A	c.(3844-3846)CAG>CAA	p.Q1282Q	PTPRT_uc010ggj.2_Silent_p.Q1301Q|PTPRT_uc010ggi.2_Silent_p.Q485Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1282	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CTCCTCCTACCTGGGCAGTGT	0.602													17	68					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40730916	40730916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40730916G>A	uc002xkg.2	-	26	3746	c.3562C>T	c.(3562-3564)CGT>TGT	p.R1188C	PTPRT_uc010ggj.2_Missense_Mutation_p.R1207C|PTPRT_uc010ggi.2_Missense_Mutation_p.R391C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1188	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCCGCACACGGGGTGTCACA	0.567													7	49					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40739032	40739032	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40739032G>A	uc002xkg.2	-	23	3379	c.3195C>T	c.(3193-3195)TTC>TTT	p.F1065F	PTPRT_uc010ggj.2_Silent_p.F1084F|PTPRT_uc010ggi.2_Silent_p.F268F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1065	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCTGGCGGACGAAGCCCAGAA	0.532													9	53					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40877386	40877386	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:40877386G>A	uc002xkg.2	-	14	2437	c.2253C>T	c.(2251-2253)ATC>ATT	p.I751I	PTPRT_uc010ggj.2_Silent_p.I770I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	751	Helical; (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGAGGCCAGCGATCACGCCAG	0.552													14	49					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306627	41306627	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:41306627G>A	uc002xkg.2	-	7	1216	c.1032C>T	c.(1030-1032)AAC>AAT	p.N344N	PTPRT_uc010ggj.2_Silent_p.N344N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	344	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACAGCTTATAGTTGGGAGAGT	0.592													23	96					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42143764	42143764	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42143764C>T	uc010zwh.1	+	5	598	c.552C>T	c.(550-552)TCC>TCT	p.S184S	L3MBTL_uc010ggk.1_Silent_p.S116S|L3MBTL_uc002xkl.2_Silent_p.S116S|L3MBTL_uc002xkm.2_Silent_p.S116S|L3MBTL_uc010ggl.2_Silent_p.S116S	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	116					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ATCTTGGTTCCTCTAATGATG	0.592													17	79					0	0	1	0	0
L3MBTL	26013	broad.mit.edu	37	20	42168820	42168820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42168820C>T	uc010zwh.1	+	20	2183	c.2137C>T	c.(2137-2139)CTC>TTC	p.L713F	L3MBTL_uc002xkl.2_Missense_Mutation_p.L645F|L3MBTL_uc002xkm.2_Missense_Mutation_p.L645F|L3MBTL_uc010ggl.2_Missense_Mutation_p.L650F|L3MBTL_uc002xkn.1_Missense_Mutation_p.L404F|L3MBTL_uc002xko.2_Missense_Mutation_p.L297F|L3MBTL_uc002xkp.2_Missense_Mutation_p.L33F|SGK2_uc002xkq.1_5'UTR	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	645					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GCACCAGTCCCTCTTCATGTC	0.622													17	19					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42602052	42602052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42602052G>A	uc002xlf.3	+	2	189	c.172G>A	c.(172-174)GAG>AAG	p.E58K	TOX2_uc010ggo.2_Missense_Mutation_p.E49K|TOX2_uc002xle.3_Missense_Mutation_p.E7K|TOX2_uc010ggp.2_Missense_Mutation_p.E7K|TOX2_uc002xlg.2_Missense_Mutation_p.E7K	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CGGAAACCCAGAGCTCCTGTC	0.542													30	34					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42694575	42694576	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42694575_42694576CC>TT	uc002xlf.3	+	6	1147_1148	c.1130_1131CC>TT	c.(1129-1131)TCC>TTT	p.S377F	TOX2_uc010ggo.2_Missense_Mutation_p.S395F|TOX2_uc002xle.3_Missense_Mutation_p.S353F|TOX2_uc010ggp.2_Missense_Mutation_p.S353F|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Missense_Mutation_p.S273F	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	377	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CCGCCACCCTCCTTCCCGCTCA	0.723													14	26					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42697295	42697295	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42697295T>A	uc002xlf.3	+	8	1453	c.1436T>A	c.(1435-1437)CTC>CAC	p.L479H	TOX2_uc010ggo.2_Missense_Mutation_p.L497H|TOX2_uc002xle.3_Missense_Mutation_p.L455H|TOX2_uc010ggp.2_Missense_Mutation_p.L455H|TOX2_uc002xlg.2_Missense_Mutation_p.L296H|TOX2_uc010zwk.1_Missense_Mutation_p.L375H	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	479					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CACAGCCTGCTCCCCAGGGAC	0.642													23	28					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42744370	42744370	+	Missense_Mutation	SNP	C	T	T	rs146641400		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42744370C>T	uc002xli.1	-	4	2818	c.1945G>A	c.(1945-1947)GGG>AGG	p.G649R		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	649	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TTCTTGGCCCCCGCCTTGGTC	0.642													18	25					0	0	1	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42885818	42885818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:42885818G>A	uc002xlq.2	+	2	273	c.206G>A	c.(205-207)GGC>GAC	p.G69D	GDAP1L1_uc002xlp.1_Missense_Mutation_p.G69D|GDAP1L1_uc010zwl.1_Missense_Mutation_p.G69D|GDAP1L1_uc010zwm.1_Missense_Mutation_p.G69D|GDAP1L1_uc010zwn.1_Intron	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	69	GST N-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GCCGAGAAGGGCCTGGTGTGC	0.697													3	7					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43057118	43057118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43057118G>A	uc002xma.2	+	9	1362	c.1273G>A	c.(1273-1275)GGA>AGA	p.G425R	HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Missense_Mutation_p.G403R|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Missense_Mutation_p.G418R	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	425					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCGACCCAGGGGACAGGCAGG	0.542													51	199					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836332	43836332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43836332G>A	uc002xni.2	+	2	451	c.394G>A	c.(394-396)GGA>AGA	p.G132R	SEMG1_uc002xnj.2_Missense_Mutation_p.G132R|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.G132R	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	132					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				ACACCATAAAGGAGGCAAAGC	0.408													19	28					0	0	1	0	0
SEMG2	6407	broad.mit.edu	37	20	43851398	43851398	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43851398G>A	uc010ggz.2	+	2	1182	c.1125G>A	c.(1123-1125)TCG>TCA	p.S375S	SEMG2_uc002xnk.2_Silent_p.S375S|SEMG2_uc002xnl.2_Silent_p.S375S	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	375	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCAGTATTTCGATCCAAACTG	0.373													6	36					0	0	1	0	0
MATN4	8785	broad.mit.edu	37	20	43933079	43933079	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43933079G>A	uc002xnn.2	-	3	619	c.432C>T	c.(430-432)ATC>ATT	p.I144I	MATN4_uc002xno.2_Silent_p.I144I|MATN4_uc002xnp.2_Silent_p.I144I|MATN4_uc010zwr.1_Silent_p.I92I|MATN4_uc002xnr.1_Silent_p.I144I|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	144	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				CGTCTGTCACGATGACAGCGA	0.711													3	10					0	0	1	0	0
RBPJL	11317	broad.mit.edu	37	20	43943151	43943151	+	Silent	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43943151A>C	uc002xns.2	+	9	1038	c.966A>C	c.(964-966)CCA>CCC	p.P322P	RBPJL_uc002xnt.2_Silent_p.P322P	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	322	By similarity.				signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCAGTCCCCCAGGAGGGGGTG	0.522													26	90					0	0	1	0	0
SDC4	6385	broad.mit.edu	37	20	43959098	43959098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:43959098G>A	uc002xnu.2	-	4	393	c.353C>T	c.(352-354)CCC>CTC	p.P118L	SDC4_uc010zws.1_Missense_Mutation_p.P46L	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor	118	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				CTCTTCAACGGGTGAGATTCT	0.527													37	35					0	0	1	0	0
WFDC6	140870	broad.mit.edu	37	20	44163121	44163121	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:44163121C>T	uc002xos.1	-	3	334	c.246G>A	c.(244-246)AAG>AAA	p.K82K		NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	Error:Variant_position_missing_in_Q9BQY6_after_alignment						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CAAGCTCCTCCTTATGGTATA	0.478													27	69					0	0	1	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44506773	44506773	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:44506773A>G	uc002xqd.2	+	2	1779	c.1576A>G	c.(1576-1578)ATG>GTG	p.M526V	ZSWIM3_uc010zxg.1_Missense_Mutation_p.M520V	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	526							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				CCTGGTGGACATGGCTGGCTC	0.542													16	26					0	0	1	0	0
ZSWIM1	90204	broad.mit.edu	37	20	44511960	44511961	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:44511960_44511961CC>TT	uc010ghi.2	+	2	842_843	c.729_730CC>TT	c.(727-732)CACCGC>CATTGC	p.R244C	ZSWIM1_uc010zxh.1_Missense_Mutation_p.R117C	NM_080603	NP_542170	Q9BR11	ZSWM1_HUMAN	zinc finger, SWIM-type containing 1	244							zinc ion binding			skin(1)	1		Myeloproliferative disorder(115;0.028)				GGCTGGCTCACCGCTGGAGAAG	0.569													16	39					0	0	1	0	0
ELMO2	63916	broad.mit.edu	37	20	45004421	45004421	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:45004421G>A	uc002xrt.1	-	12	1026	c.816C>T	c.(814-816)ATC>ATT	p.I272I	ELMO2_uc010zxq.1_Silent_p.I4I|ELMO2_uc002xrs.1_Silent_p.I19I|ELMO2_uc002xru.1_Silent_p.I272I|ELMO2_uc010zxr.1_Silent_p.I284I|ELMO2_uc010zxs.1_Silent_p.I89I|ELMO2_uc002xrv.1_5'UTR|ELMO2_uc002xrw.2_Silent_p.I89I|ELMO2_uc002xrx.1_Silent_p.I272I	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	272					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGTTCCCTCGGATCACATGCT	0.473													9	38					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45130973	45130973	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:45130973G>A	uc002xsc.2	-	5	1189	c.1005C>T	c.(1003-1005)GCC>GCT	p.A335A	ZNF334_uc002xsa.2_Silent_p.A358A|ZNF334_uc002xsb.2_Silent_p.A297A|ZNF334_uc002xsd.2_Silent_p.A297A|ZNF334_uc010ghl.2_Silent_p.A334A	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	335	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GTTCAGCCAGGGCTGACTTCC	0.423													18	96					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354767	45354767	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:45354767G>A	uc002xsl.2	+	2	1189	c.1092G>A	c.(1090-1092)AGG>AGA	p.R364R		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	364	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGGACCAAAGGGAGCCAATCT	0.622													27	43					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45808448	45808448	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:45808448T>C	uc002xsm.2	+	13	1575	c.1201T>C	c.(1201-1203)TTG>CTG	p.L401L	EYA2_uc010ghp.2_Intron|EYA2_uc002xsn.2_Silent_p.L406L|EYA2_uc002xso.2_Silent_p.L401L|EYA2_uc002xsp.2_Silent_p.L401L|EYA2_uc002xsq.2_Silent_p.L371L	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	401					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GTCCACAGGGTTGATAGGCAC	0.502													4	16					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46268361	46268361	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:46268361C>T	uc002xtk.2	+	15	2953	c.2748C>T	c.(2746-2748)TCC>TCT	p.S916S	NCOA3_uc010ght.1_Intron|NCOA3_uc002xtl.2_Silent_p.S916S|NCOA3_uc002xtm.2_Silent_p.S916S|NCOA3_uc002xtn.2_Silent_p.S916S|NCOA3_uc010zyc.1_Silent_p.S711S	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	916					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						AGACTCCTTCCTCAGGAGACT	0.428													37	116					0	0	1	0	0
SPATA2	9825	broad.mit.edu	37	20	48522672	48522672	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:48522672C>T	uc010gie.2	-	3	1397	c.1047G>A	c.(1045-1047)CGG>CGA	p.R349R	SPATA2_uc002xuw.2_Silent_p.R349R|SPATA2_uc010zyn.1_Silent_p.R212R	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	349					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			GAGCATCCTGCCGACGGTAGG	0.637													25	117					0	0	1	0	0
PARD6B	84612	broad.mit.edu	37	20	49366359	49366359	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:49366359C>T	uc002xvo.2	+	3	696	c.453C>T	c.(451-453)CTC>CTT	p.L151L		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	151	Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						TGGATATTCTCCCAGAAACGC	0.458													37	28					0	0	1	0	0
BCAS4	55653	broad.mit.edu	37	20	49458422	49458422	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:49458422C>T	uc002xvq.2	+	4	538	c.474C>T	c.(472-474)CTC>CTT	p.L158L	BCAS4_uc002xvr.2_Silent_p.L158L|BCAS4_uc002xvs.2_Intron	NM_017843	NP_060313	Q8TDM0	BCAS4_HUMAN	breast carcinoma amplified sequence 4 isoform a	158						cytoplasm					0						CCGCAGGGCTCCCCTCCTTCA	0.672													5	56					0	0	1	0	0
DPM1	8813	broad.mit.edu	37	20	49575052	49575052	+	Silent	SNP	G	A	A	rs150509150	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:49575052G>A	uc002xvw.1	-	1	9	c.9C>T	c.(7-9)TCC>TCT	p.S3S	DPM1_uc002xvx.1_RNA|MOCS3_uc002xvy.1_5'Flank	NM_003859	NP_003850	O60762	DPM1_HUMAN	dolichyl-phosphate mannosyltransferase 1	3					C-terminal protein lipidation|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|protein N-linked glycosylation via asparagine|protein O-linked mannosylation	dolichol-phosphate-mannose synthase complex|endoplasmic reticulum membrane|membrane fraction	dolichyl-phosphate beta-D-mannosyltransferase activity|dolichyl-phosphate-mannose-protein mannosyltransferase activity|protein binding			ovary(1)	1						TGACTTCCAAGGAGGCCATGG	0.572													10	86					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870721	51870721	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:51870721G>C	uc002xwo.2	+	2	1680	c.724G>C	c.(724-726)GAT>CAT	p.D242H		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	242					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CCACTATCAAGATGACAACCG	0.522													14	52					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872519	51872519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:51872519G>A	uc002xwo.2	+	2	3478	c.2522G>A	c.(2521-2523)AGA>AAA	p.R841K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	841	Homeobox; atypical.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TTGCATAAAAGAAAAGGCCGG	0.527													12	100					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52591931	52591931	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:52591931C>T	uc002xws.2	-	8	1517	c.1179G>A	c.(1177-1179)GAG>GAA	p.E393E	BCAS1_uc010zza.1_Intron|BCAS1_uc010zzb.1_Silent_p.E341E|BCAS1_uc010gim.2_Intron|BCAS1_uc002xwt.2_Intron|BCAS1_uc010gil.1_Silent_p.E393E	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	393						cytoplasm	protein binding	p.E393D(1)		ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			AACTTACATTCTCCTCCGCAC	0.413													36	23					0	0	1	0	0
CBLN4	140689	broad.mit.edu	37	20	54573733	54573733	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:54573733C>T	uc002xxa.2	-	3	1271	c.486G>A	c.(484-486)ACG>ACA	p.T162T		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	162	C1q.					cell junction|extracellular region|synapse		p.T162M(1)		ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			GGACACCATTCGTGGCAGCTT	0.403													5	71					0	0	1	0	0
MC3R	4159	broad.mit.edu	37	20	54824049	54824049	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:54824049C>T	uc002xxb.2	+	1	262	c.150C>T	c.(148-150)ATC>ATT	p.I50I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	87	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CTCTGGGCATCGTCAGTCTGC	0.587													94	49					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55012585	55012585	+	Silent	SNP	C	T	T	rs143359198	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:55012585C>T	uc002xxp.2	+	3	627	c.402C>T	c.(400-402)CCC>CCT	p.P134P	CASS4_uc002xxq.3_Silent_p.P134P|CASS4_uc002xxr.2_Silent_p.P134P|CASS4_uc010zze.1_Intron|CASS4_uc010gio.2_Silent_p.P134P	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	134					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						ATGAATTCCCCGACCCTCCCA	0.572													30	209					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55027196	55027196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:55027196C>T	uc002xxp.2	+	6	1189	c.964C>T	c.(964-966)CCT>TCT	p.P322S	CASS4_uc002xxq.3_Missense_Mutation_p.P322S|CASS4_uc002xxr.2_Missense_Mutation_p.P322S|CASS4_uc010zze.1_Missense_Mutation_p.P268S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	322					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGGCACATTTCCTTTGGATGA	0.448													29	53					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55028054	55028054	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:55028054T>A	uc002xxp.2	+	6	2047	c.1822T>A	c.(1822-1824)TGT>AGT	p.C608S	CASS4_uc002xxq.3_Missense_Mutation_p.C608S|CASS4_uc002xxr.2_Missense_Mutation_p.C608S|CASS4_uc010zze.1_Missense_Mutation_p.C554S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	608					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGAATTTAAGTGTGAAAAATA	0.433													8	58					0	0	1	0	0
BMP7	655	broad.mit.edu	37	20	55777658	55777658	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:55777658G>A	uc010gip.1	-	3	1162	c.633C>T	c.(631-633)CTC>CTT	p.L211L	BMP7_uc010giq.1_Silent_p.L211L|BMP7_uc002xyc.2_Silent_p.L211L	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	211					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			TACGGCTGTCGAGCAGGAAGA	0.622													13	64					0	0	1	0	0
RAE1	8480	broad.mit.edu	37	20	55948608	55948608	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:55948608T>C	uc002xyg.2	+	9	1061	c.720T>C	c.(718-720)GTT>GTC	p.V240V	RAE1_uc010gis.1_Silent_p.V193V|RAE1_uc010git.1_Silent_p.V240V|RAE1_uc002xyh.2_Silent_p.V240V|RAE1_uc002xyi.2_Silent_p.V240V	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	240					carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			AGGGGAGAGTTGCTATTCACT	0.413													23	117					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56099122	56099122	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:56099122A>C	uc010gix.1	-	1	802	c.140T>G	c.(139-141)TTG>TGG	p.L47W	CTCFL_uc010giw.1_Missense_Mutation_p.L47W|CTCFL_uc002xym.2_Missense_Mutation_p.L47W|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Missense_Mutation_p.L47W|CTCFL_uc010gjb.1_Missense_Mutation_p.L47W|CTCFL_uc010gjc.1_Missense_Mutation_p.L47W|CTCFL_uc010gjd.1_Missense_Mutation_p.L47W|CTCFL_uc010gje.2_Missense_Mutation_p.L47W|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Missense_Mutation_p.L47W|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Missense_Mutation_p.L47W|CTCFL_uc010gjk.1_Missense_Mutation_p.L47W|CTCFL_uc010gjl.1_Missense_Mutation_p.L47W	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	47					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CTCGGCCTCCAACTCACTAGG	0.572													93	285					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56140624	56140624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:56140624G>A	uc002xyn.3	+	10	1796	c.1633G>A	c.(1633-1635)GAT>AAT	p.D545N	PCK1_uc010zzm.1_Missense_Mutation_p.D228N	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	545					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CAACCGGATCGATGGAAAAGC	0.542													23	69					0	0	1	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227472	56227472	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:56227472G>A	uc002xyq.2	-	4	894	c.501C>T	c.(499-501)CTC>CTT	p.L167L	PMEPA1_uc002xyr.2_Silent_p.L117L|PMEPA1_uc002xys.2_Silent_p.L132L|PMEPA1_uc002xyt.2_Silent_p.L117L	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	167	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						CCCGAAGCTGGAGGGTGCAGG	0.642													16	99					0	0	1	0	0
STX16	8675	broad.mit.edu	37	20	57245658	57245658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:57245658G>A	uc002xzi.2	+	6	1382	c.647G>A	c.(646-648)CGG>CAG	p.R216Q	STX16_uc010zzq.1_Missense_Mutation_p.R30Q|STX16_uc002xzk.2_Missense_Mutation_p.R199Q|STX16_uc002xzm.2_Missense_Mutation_p.R212Q|STX16_uc002xzj.2_Missense_Mutation_p.R195Q|STX16_uc002xzl.2_Missense_Mutation_p.R30Q	NM_001001433	NP_001001433	O14662	STX16_HUMAN	syntaxin 16 isoform a	216	Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|microsome|SNARE complex	SNAP receptor activity			ovary(1)	1	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;3.73e-09)|Epithelial(14;8.54e-06)|all cancers(14;6.89e-05)			CTTTACCATCGGGTACGTGAA	0.473													30	90					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57415733	57415733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:57415733G>A	uc002xzt.2	+	1	939	c.572G>A	c.(571-573)GGG>GAG	p.G191E	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CCCAGGGAAGGGGAGGAGCTC	0.662			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	20					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57415882	57415882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:57415882C>T	uc002xzt.2	+	1	1088	c.721C>T	c.(721-723)CCC>TCC	p.P241S	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GGGACCCATCCCCATCCGGCG	0.612			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			4	41					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57769065	57769065	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:57769065C>T	uc002yan.2	+	1	2991	c.2991C>T	c.(2989-2991)TCC>TCT	p.S997S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	997						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CAGGCCCCTCCCCAGGTGAGG	0.637													22	41					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57829230	57829230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:57829230C>T	uc002yan.2	+	5	4466	c.4466C>T	c.(4465-4467)TCT>TTT	p.S1489F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1489						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATTGCTACCTCTGTGGCTGCC	0.493													25	136					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58322815	58322815	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:58322815C>T	uc002yau.2	+	3	750	c.283C>T	c.(283-285)CTG>TTG	p.L95L	PHACTR3_uc002yat.2_Silent_p.L92L|PHACTR3_uc010zzw.1_Silent_p.L54L|PHACTR3_uc002yav.2_Silent_p.L54L|PHACTR3_uc002yaw.2_Silent_p.L54L|PHACTR3_uc002yax.2_Silent_p.L54L	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	95	RPEL 1.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			TTGGGCAGCGCTGGAGAAGAA	0.582													47	133					0	0	1	0	0
SYCP2	10388	broad.mit.edu	37	20	58450426	58450426	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:58450426C>T	uc002yaz.2	-	33	3388	c.3249G>A	c.(3247-3249)TGG>TGA	p.W1083*		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1083					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			ATGAGTTTTTCCATTGTTTTG	0.368													9	57					0	0	1	0	0
CDH26	60437	broad.mit.edu	37	20	58571079	58571079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:58571079C>T	uc002ybe.2	+	12	2158	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	CDH26_uc002ybf.1_Missense_Mutation_p.P200S|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_Missense_Mutation_p.P134S|CDH26_uc002ybh.2_5'Flank|CDH26_uc002ybi.2_5'Flank	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	620	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GGCCCTGTTCCCTGTCTGTGC	0.597													9	46					0	0	1	0	0
MIR646	693231	broad.mit.edu	37	20	58883535	58883535	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:58883535C>T	hsa-mir-646|MI0003661	+			c.4C>T			uc002ybl.2_Intron|uc010gjw.1_Intron																	0						gcctggagatcaggagtctgc	0													16	81					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60448873	60448873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:60448873C>T	uc002ybn.1	+	7	981	c.967C>T	c.(967-969)CCA>TCA	p.P323S	CDH4_uc002ybp.1_Missense_Mutation_p.P249S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	323	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GACCCAGACCCCACAGAGCCC	0.627													83	60					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60485528	60485528	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:60485528C>T	uc002ybn.1	+	9	1253	c.1239C>T	c.(1237-1239)CTC>CTT	p.L413L	CDH4_uc002ybp.1_Silent_p.L339L	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	413	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			TCGCAAACCTCACGGTGATGG	0.532													12	56					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60503447	60503447	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:60503447C>T	uc002ybn.1	+	12	1985	c.1971C>T	c.(1969-1971)GCC>GCT	p.A657A	CDH4_uc002ybp.1_Silent_p.A583A	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	657	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			TCCCGGCGGCCGTGCGGAAGA	0.667													30	100					0	0	1	0	0
OSBPL2	9885	broad.mit.edu	37	20	60847299	60847299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:60847299C>T	uc002yck.1	+	5	579	c.377C>T	c.(376-378)CCC>CTC	p.P126L	OSBPL2_uc002ycl.1_Missense_Mutation_p.P114L|OSBPL2_uc011aah.1_Missense_Mutation_p.P34L	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	126					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			CAGCCCCAGCCCCTGGAGAGG	0.607													17	81					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60886128	60886128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:60886128G>A	uc002ycq.2	-	74	10178	c.10111C>T	c.(10111-10113)CTC>TTC	p.L3371F		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3371	Laminin G-like 4.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTTCGCGGGAGGACGTGCATG	0.682													13	45					0	0	1	0	0
C20orf200	253868	broad.mit.edu	37	20	61143649	61143649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61143649C>T	uc002ycz.1	-	3	690	c.199G>A	c.(199-201)GGA>AGA	p.G67R	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			GGCTGGAATCCAGAATCAGAT	0.667													10	85					0	0	1	0	0
COL9A3	1299	broad.mit.edu	37	20	61468541	61468541	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61468541C>T	uc002ydm.2	+	30	1713	c.1710C>T	c.(1708-1710)TCC>TCT	p.S570S	COL9A3_uc002ydn.2_Silent_p.S64S	NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	570	Triple-helical region 2 (COL2).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CCCCAGGCTCCATTGGTCACC	0.687													24	156					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511758	61511759	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61511758_61511759CC>TT	uc002ydr.1	-	16	5813_5814	c.5549_5550GG>AA	c.(5548-5550)GGG>GAA	p.G1850E	DIDO1_uc002yds.1_Missense_Mutation_p.G1850E	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1850	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CCCTCTTCTCCCCATGGGGATC	0.609													75	82					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61512325	61512325	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61512325G>A	uc002ydr.1	-	16	5247	c.4983C>T	c.(4981-4983)CCC>CCT	p.P1661P	DIDO1_uc002yds.1_Silent_p.P1661P	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1661					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AAGGCGGTGTGGGCAGCAGCA	0.731													5	32					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61513160	61513160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61513160C>T	uc002ydr.1	-	16	4412	c.4148G>A	c.(4147-4149)AGG>AAG	p.R1383K	DIDO1_uc002yds.1_Missense_Mutation_p.R1383K	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1383					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTCGTATGGCCTGTCGTCCTC	0.607													37	151					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61542779	61542780	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61542779_61542780CC>TT	uc002ydr.1	-	3	449_450	c.185_186GG>AA	c.(184-186)CGG>CAA	p.R62Q	DIDO1_uc002yds.1_Missense_Mutation_p.R62Q|DIDO1_uc002ydt.1_Missense_Mutation_p.R62Q|DIDO1_uc002ydu.1_Missense_Mutation_p.R62Q|DIDO1_uc002ydv.1_Missense_Mutation_p.R62Q|DIDO1_uc002ydw.1_Missense_Mutation_p.R62Q|DIDO1_uc002ydx.1_Missense_Mutation_p.R62Q|DIDO1_uc011aao.1_Missense_Mutation_p.R62Q	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	62					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCCCACTGCGCCGCAGGGACAG	0.688													5	26					0	0	1	0	0
YTHDF1	54915	broad.mit.edu	37	20	61835086	61835086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61835086G>A	uc002yeh.2	-	4	500	c.206C>T	c.(205-207)TCC>TTC	p.S69F	YTHDF1_uc011aaq.1_Missense_Mutation_p.S19F	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	69										ovary(2)	2						CTCATTGAGGGAGTAAGGAAA	0.512													10	89					0	0	1	0	0
YTHDF1	54915	broad.mit.edu	37	20	61835093	61835093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61835093G>A	uc002yeh.2	-	4	493	c.199C>T	c.(199-201)CCT>TCT	p.P67S	YTHDF1_uc011aaq.1_Missense_Mutation_p.P17S	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	67										ovary(2)	2						AGGGAGTAAGGAAATCCAATG	0.512													28	61					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61944500	61944500	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61944500T>C	uc011aau.1	+	17	2208	c.2108T>C	c.(2107-2109)GTC>GCC	p.V703A	COL20A1_uc011aav.1_Missense_Mutation_p.V524A	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	703	Fibronectin type-III 5.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GGCACGGCCGTCCTGCCTGGC	0.672													13	24					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61946784	61946784	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61946784C>T	uc011aau.1	+	20	2617	c.2517C>T	c.(2515-2517)TCC>TCT	p.S839S	COL20A1_uc011aav.1_Silent_p.S660S	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	839					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CTGACGGCTCCCTCCCAGGTG	0.701													3	8					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61982185	61982185	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:61982185T>C	uc002yes.2	-	5	756	c.578A>G	c.(577-579)AAC>AGC	p.N193S	CHRNA4_uc002yet.1_Missense_Mutation_p.N17S|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.N122S|CHRNA4_uc002yev.1_Missense_Mutation_p.N17S|CHRNA4_uc010gkf.1_Missense_Mutation_p.N17S	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	193	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GCTGTGCATGTTCACCAGGTC	0.582													16	78					0	0	1	0	0
EEF1A2	1917	broad.mit.edu	37	20	62126156	62126156	+	Splice_Site	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62126156A>C	uc002yfd.1	-	3	722	c.621_splice	c.e3+1	p.N207_splice	EEF1A2_uc002yfe.1_Splice_Site_p.N207_splice|EEF1A2_uc010gkg.1_Splice_Site_p.N207_splice	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha							nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			GCCGCCACTCACGTTGGGGGA	0.701													4	29					0	0	1	0	0
PTK6	5753	broad.mit.edu	37	20	62161532	62161533	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62161532_62161533GG>AA	uc002yfg.2	-	7	1106_1107	c.1066_1067CC>TT	c.(1066-1068)CCT>TTT	p.P356F	PTK6_uc011aay.1_Missense_Mutation_p.P255F|PTK6_uc011aaz.1_Missense_Mutation_p.P118F	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	356	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			GAGCGCTTCAGGGGCCGTCCAC	0.604													10	93					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62196116	62196116	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62196116G>A	uc002yfm.2	-	9	4951	c.4059C>T	c.(4057-4059)CTC>CTT	p.L1353L	PRIC285_uc002yfl.1_Silent_p.L784L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1353					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGGCATCATCGAGGTTGCAGG	0.657													25	30					0	0	1	0	0
STMN3	50861	broad.mit.edu	37	20	62275112	62275112	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62275112C>T	uc002yfr.1	-	3	370	c.288G>A	c.(286-288)AGG>AGA	p.R96R	STMN3_uc011abb.1_Silent_p.R96R	NM_015894	NP_056978	Q9NZ72	STMN3_HUMAN	SCG10-like-protein	96	Potential.				cytoplasmic microtubule organization|intracellular signal transduction|negative regulation of Rac protein signal transduction|neuron projection development|regulation of cytoskeleton organization|regulation of Rac GTPase activity	cytoplasm	protein domain specific binding				0	all_cancers(38;2.31e-11)|all_epithelial(29;7.76e-13)		Epithelial(9;1.9e-09)|all cancers(9;1.22e-08)|BRCA - Breast invasive adenocarcinoma(10;8.86e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.00559)			TCCTTGCCTTCCTCCGCTCCT	0.657													38	51					0	0	1	0	0
RTEL1	51750	broad.mit.edu	37	20	62293945	62293946	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62293945_62293946CC>TT	uc002yfu.1	+	5	785_786	c.442_443CC>TT	c.(442-444)CCT>TTT	p.P148F	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Missense_Mutation_p.P148F|RTEL1_uc011abd.1_Missense_Mutation_p.P172F|RTEL1_uc002yfv.2_Missense_Mutation_p.P198F|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	148	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			GTGCATCCATCCTGAGGTGAAG	0.624													50	39					0	0	1	0	0
ZGPAT	84619	broad.mit.edu	37	20	62367163	62367163	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62367163G>A	uc002ygk.2	+	7	1666	c.1488G>A	c.(1486-1488)GAG>GAA	p.E496E	ZGPAT_uc002ygi.2_Silent_p.E476E|ZGPAT_uc002ygj.2_Silent_p.E476E|ZGPAT_uc010gkk.1_Silent_p.E53E|ZGPAT_uc010gkl.1_Silent_p.E476E|ZGPAT_uc002ygm.2_Silent_p.E467E|ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_5'UTR|LIME1_uc002ygp.3_5'Flank	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	496					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					AGCTGCAGGAGAAGCTGGCAG	0.667													3	26					0	0	1	0	0
ZBTB46	140685	broad.mit.edu	37	20	62378480	62378480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62378480C>T	uc002ygv.1	-	5	1774	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	525					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					AACAGCGCCTCTGGAGAGCCC	0.736													4	30					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62838965	62838965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62838965C>T	uc002yii.2	+	7	780	c.416C>T	c.(415-417)TCC>TTC	p.S139F	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	139					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CCCGTCAAGTCCCATTTTGGA	0.577													35	145					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62839557	62839557	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62839557C>T	uc002yii.2	+	7	1372	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	336					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CACCCAGTCCCAAGCCTGAGT	0.542													30	220					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62851143	62851143	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr20:62851143C>T	uc002yii.2	+	13	2413	c.2049C>T	c.(2047-2049)TTC>TTT	p.F683F	MYT1_uc002yih.2_Silent_p.F385F|MYT1_uc002yij.2_Silent_p.F342F	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	683					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AAAATGCTTTCCCcagcagca	0.498													11	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	21	9769013	9769013	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:9769013C>T	uc011abu.1	+	10		c.988C>T								Homo sapiens, clone IMAGE:4720764, mRNA.																		CAAACGCTGCCCTTGAAAAGT	0.333													3	39					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10920104	10920104	+	Missense_Mutation	SNP	C	T	T	rs142165446		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:10920104C>T	uc002yip.1	-	19	1518	c.1150G>A	c.(1150-1152)GGA>AGA	p.G384R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G366R|TPTE_uc002yir.1_Missense_Mutation_p.G346R|TPTE_uc010gkv.1_Missense_Mutation_p.G246R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	384	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTTTTTACTCCCTGAAATTTT	0.378													8	50					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10942740	10942740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:10942740C>T	uc002yip.1	-	13	1069	c.701G>A	c.(700-702)GGA>GAA	p.G234E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G216E|TPTE_uc002yir.1_Missense_Mutation_p.G196E|TPTE_uc010gkv.1_Missense_Mutation_p.G96E	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	234	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TAGGTCAAATCCATCCCTTGT	0.318													21	338					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10944671	10944672	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:10944671_10944672GG>AA	uc002yip.1	-	11	930_931	c.562_563CC>TT	c.(562-564)CCC>TTC	p.P188F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P170F|TPTE_uc002yir.1_Missense_Mutation_p.P150F|TPTE_uc010gkv.1_Missense_Mutation_p.P50F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	188					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTCATACCTGGGAATATTCCTA	0.287													18	255					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10951333	10951333	+	Missense_Mutation	SNP	G	A	A	rs148393004		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:10951333G>A	uc002yip.1	-	10	747	c.379C>T	c.(379-381)CGT>TGT	p.R127C	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R109C|TPTE_uc002yir.1_Missense_Mutation_p.R89C|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	127					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GAAATAGAACGATACTCCAAA	0.338													10	66					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10973731	10973731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:10973731C>T	uc002yip.1	-	4	371	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.M1I|TPTE_uc002yir.1_Missense_Mutation_p.M1I|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	1					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACCTTTCATTCATACGTGCCT	0.353													10	49					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058254	11058254	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:11058254G>A	uc002yit.1	-	3	394	c.186C>T	c.(184-186)ATC>ATT	p.I62I	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAAGGATAATGATACATCTGG	0.428													8	96					0	0	1	0	0
LIPI	149998	broad.mit.edu	37	21	15537625	15537625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:15537625G>A	uc002yjm.2	-	6	893	c.883C>T	c.(883-885)CCT>TCT	p.P295S	LIPI_uc010gkw.1_Missense_Mutation_p.P198S	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	274					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GAACGACAAGGAAATGAAATA	0.353													7	31					0	0	1	0	0
HSPA13	6782	broad.mit.edu	37	21	15753598	15753598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:15753598C>T	uc002yjt.2	-	2	361	c.292G>A	c.(292-294)GAT>AAT	p.D98N	HSPA13_uc011abx.1_5'UTR	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	98						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						CTTTTGGCATCATATATTGTG	0.368													12	63					0	0	1	0	0
SAMSN1	64092	broad.mit.edu	37	21	15873009	15873009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:15873009C>T	uc002yju.1	-	6	691	c.609G>A	c.(607-609)TGG>TGA	p.W203*	SAMSN1_uc010gky.1_Nonsense_Mutation_p.W35*|SAMSN1_uc002yjv.1_Nonsense_Mutation_p.W271*	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	203	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		ACATTCCTGTCCACATCCCCA	0.388													26	101					0	0	1	0	0
SAMSN1	64092	broad.mit.edu	37	21	15893519	15893519	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:15893519G>A	uc002yju.1	-	2	163	c.81C>T	c.(79-81)TTC>TTT	p.F27F	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.F95F	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	27					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GAAAACGATCGAAATTCCCAA	0.289													4	17					0	0	1	0	0
CHODL	140578	broad.mit.edu	37	21	19629035	19629035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:19629035G>A	uc002ykv.2	+	2	680	c.289G>A	c.(289-291)GGT>AGT	p.G97S	CHODL_uc002ykr.2_Missense_Mutation_p.G56S|CHODL_uc002yks.2_Missense_Mutation_p.G56S|CHODL_uc002ykt.2_Missense_Mutation_p.G56S|CHODL_uc002yku.2_Missense_Mutation_p.G56S	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	97	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		GATTTCTGATGGTGATTTCTG	0.498													27	80					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19726083	19726083	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:19726083G>A	uc002ykw.2	-	9	1009	c.978C>T	c.(976-978)GGC>GGT	p.G326G		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	326	Extracellular (Potential).|CUB 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TTGCATTAAAGCCAACATAAT	0.303													37	50					0	0	1	0	0
JAM2	58494	broad.mit.edu	37	21	27071148	27071148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:27071148G>A	uc002ylp.1	+	5	1099	c.554G>A	c.(553-555)AGC>AAC	p.S185N	JAM2_uc011ace.1_Missense_Mutation_p.S185N|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Missense_Mutation_p.S149N|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.S185N|JAM2_uc010gli.1_Missense_Mutation_p.S185N	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	185	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						GGCTCCCAAAGCACCAACAGC	0.398													9	29					0	0	1	0	0
APP	351	broad.mit.edu	37	21	27394171	27394171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:27394171C>T	uc002ylz.2	-	6	1050	c.850G>A	c.(850-852)GAA>AAA	p.E284K	APP_uc010glk.2_Missense_Mutation_p.E279K|APP_uc002yma.2_Missense_Mutation_p.E284K|APP_uc011ach.1_Missense_Mutation_p.E228K|APP_uc002ymb.2_Missense_Mutation_p.E284K|APP_uc010glj.2_Missense_Mutation_p.E228K|APP_uc011aci.1_Missense_Mutation_p.E249K|APP_uc011acj.1_Missense_Mutation_p.E284K	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	284	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				ACCACCTCTTCCACAGACTCT	0.338													18	19					0	0	1	0	0
KRTAP19-4	337971	broad.mit.edu	37	21	31869245	31869245	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:31869245G>A	uc011acz.1	-	1	184	c.184C>T	c.(184-186)CTA>TTA	p.L62L		NM_181610	NP_853641	Q3LI73	KR194_HUMAN	keratin associated protein 19-4	62						intermediate filament				ovary(2)	2						GATTTCAGTAGAATTGAGAAT	0.453													39	100					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32554740	32554740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:32554740G>A	uc002yow.1	-	16	3357	c.2885C>T	c.(2884-2886)CCA>CTA	p.P962L	TIAM1_uc011adk.1_Missense_Mutation_p.P962L|TIAM1_uc011adl.1_Missense_Mutation_p.P902L	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	962					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						AGCCATACCTGGGTTGCTGGT	0.637													9	12					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32638597	32638597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:32638597G>A	uc002yow.1	-	5	1164	c.692C>T	c.(691-693)TCC>TTC	p.S231F	TIAM1_uc011adk.1_Missense_Mutation_p.S231F|TIAM1_uc011adl.1_Missense_Mutation_p.S231F|TIAM1_uc002yox.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	231					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GTCACCCAAGGAATTGGCTCT	0.562													24	84					0	0	1	0	0
HUNK	30811	broad.mit.edu	37	21	33331204	33331204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:33331204G>A	uc002yph.2	+	5	1156	c.796G>A	c.(796-798)GAG>AAG	p.E266K		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	266	Protein kinase.				multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						TTTCACGGTGGAGCCTTTCAG	0.537													30	83					0	0	1	0	0
GCFC1	94104	broad.mit.edu	37	21	34117202	34117202	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:34117202G>A	uc002yqn.2	-	13	2281	c.2091C>T	c.(2089-2091)GAC>GAT	p.D697D	GCFC1_uc002yql.2_Silent_p.D206D|GCFC1_uc002yqm.2_Silent_p.D191D|GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Silent_p.D697D	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	697				Missing (in Ref. 5; AAD34617).		cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TAGAAAAAGGGTCCCACATAT	0.333													38	64					0	0	1	0	0
SON	6651	broad.mit.edu	37	21	34922706	34922706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:34922706C>T	uc002yse.1	+	3	1218	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	SON_uc002ysb.1_Missense_Mutation_p.S390F|SON_uc002ysc.2_Missense_Mutation_p.S390F|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	390					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CCTGCGACCTCCATGCCGGAG	0.662													26	60					0	0	1	0	0
KCNE1	3753	broad.mit.edu	37	21	35821767	35821767	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:35821767A>G	uc010gmp.2	-	2	596	c.166T>C	c.(166-168)TTC>CTC	p.F56L	KCNE1_uc002ytz.2_Missense_Mutation_p.F56L|KCNE1_uc010gmq.2_Missense_Mutation_p.F56L|KCNE1_uc010gmr.2_Missense_Mutation_p.F56L|KCNE1_uc010gms.2_Missense_Mutation_p.F56L|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	56	Helical; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	AGGGTGAAGAAGCCGAAGAAT	0.607													189	294					0	0	1	0	0
KCNE1	3753	broad.mit.edu	37	21	35821771	35821771	+	Silent	SNP	G	A	A	rs17173508		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:35821771G>A	uc010gmp.2	-	2	592	c.162C>T	c.(160-162)TTC>TTT	p.F54F	KCNE1_uc002ytz.2_Silent_p.F54F|KCNE1_uc010gmq.2_Silent_p.F54F|KCNE1_uc010gmr.2_Silent_p.F54F|KCNE1_uc010gms.2_Silent_p.F54F|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	54	Helical; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	TGAAGAAGCCGAAGAATCCCA	0.607													198	285					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37581099	37581099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:37581099C>T	uc002yvg.2	+	5	657	c.578C>T	c.(577-579)CCG>CTG	p.P193L	DOPEY2_uc011aeb.1_Missense_Mutation_p.P193L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	193					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CTGGCCAGCCCGTCCATCCGC	0.612													16	48					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37603281	37603281	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:37603281G>A	uc002yvg.2	+	14	2278	c.2199G>A	c.(2197-2199)GAG>GAA	p.E733E	DOPEY2_uc011aeb.1_Silent_p.E733E	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	733					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GGGATGTTGAGAAGGTGGTCA	0.582													21	60					0	0	1	0	0
HLCS	3141	broad.mit.edu	37	21	38302620	38302620	+	Silent	SNP	G	A	A	rs138442090		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:38302620G>A	uc010gnb.2	-	5	2311	c.1110C>T	c.(1108-1110)ACC>ACT	p.T370T	HLCS_uc002yvs.2_Silent_p.T370T|HLCS_uc010gnc.1_Silent_p.T517T	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	370					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TGAGGCCAAGGGTTGTCAGAA	0.483													20	27					0	0	1	0	0
HLCS	3141	broad.mit.edu	37	21	38309472	38309472	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:38309472C>T	uc010gnb.2	-	4	1474	c.273G>A	c.(271-273)AGG>AGA	p.R91R	HLCS_uc002yvs.2_Silent_p.R91R|HLCS_uc010gnc.1_Silent_p.R238R	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	91					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	GGCCCCCTCCCCTGTCACTGT	0.547													16	51					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38538480	38538480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:38538480C>T	uc002yvz.2	+	33	4069	c.3964C>T	c.(3964-3966)CCT>TCT	p.P1322S	TTC3_uc011aee.1_Missense_Mutation_p.P1012S|TTC3_uc002ywa.2_Missense_Mutation_p.P1322S|TTC3_uc002ywb.2_Missense_Mutation_p.P1322S|TTC3_uc010gnf.2_Missense_Mutation_p.P1087S|TTC3_uc002ywc.2_Missense_Mutation_p.P1012S|TTC3_uc002ywd.1_Missense_Mutation_p.P386S	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1322					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TACGTATCTTCCTTTCCAGAG	0.478													83	94					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39672093	39672093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:39672093G>A	uc002ywv.2	+	4	1212	c.910G>A	c.(910-912)GAA>AAA	p.E304K	KCNJ15_uc002yww.2_Missense_Mutation_p.E304K|KCNJ15_uc002ywx.2_Missense_Mutation_p.E304K	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	304	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TATCCCAGAGGAAATCTACTG	0.463													22	34					0	0	1	0	0
LCA5L	150082	broad.mit.edu	37	21	40795021	40795021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:40795021C>T	uc002yxu.2	-	5	1031	c.718G>A	c.(718-720)GAT>AAT	p.D240N	LCA5L_uc002yxv.2_Missense_Mutation_p.D240N|LCA5L_uc002yxw.1_Missense_Mutation_p.D240N|LCA5L_uc002yxx.1_Missense_Mutation_p.D102N|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	240	Potential.										0		Prostate(19;1.2e-06)				TGCAAGATATCTTTAGTCTTC	0.363													38	46					0	0	1	0	0
B3GALT5	10317	broad.mit.edu	37	21	41033056	41033056	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:41033056C>T	uc002yyb.1	+	5	1162	c.570C>T	c.(568-570)CCC>CCT	p.P190P	B3GALT5_uc002yye.2_Silent_p.P190P|B3GALT5_uc002yyi.1_Silent_p.P190P|B3GALT5_uc002yyj.1_Silent_p.P190P|B3GALT5_uc002yyk.1_Silent_p.P190P|B3GALT5_uc002yyl.1_Silent_p.P190P|B3GALT5_uc002yym.1_Silent_p.P190P	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	190	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				ATGAGTTTCCCATCAGGCAGC	0.463													19	54					0	0	1	0	0
PCP4	5121	broad.mit.edu	37	21	41300978	41300978	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:41300978T>G	uc002yyp.2	+	3	212	c.131T>G	c.(130-132)GTG>GGG	p.V44G		NM_006198	NP_006189	P48539	PCP4_HUMAN	Purkinje cell protein 4	44	IQ.				central nervous system development	cytosol|nucleus				large_intestine(1)	1		Prostate(19;2.65e-06)|all_epithelial(19;0.138)				CGTGCAGCGGTGGCCATTCAG	0.463													27	30					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41725530	41725530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:41725530C>T	uc002yyq.1	-	5	1248	c.796G>A	c.(796-798)GAA>AAA	p.E266K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	266	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTGAAAGTTCCAGGGGCATG	0.577													24	30					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080619	42080619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:42080619C>T	uc002yyq.1	-	2	574	c.122G>A	c.(121-123)GGG>GAG	p.G41E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	41	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACCAGAGTCCCCGTGGTGCT	0.572													30	118					0	0	1	0	0
MX2	4600	broad.mit.edu	37	21	42762578	42762578	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:42762578G>A	uc002yzf.1	+	6	923	c.819G>A	c.(817-819)ACG>ACA	p.T273T	MX2_uc011aer.1_Intron|MX2_uc002yzg.1_5'UTR	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	273					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				TTGCCACCACGGAGGCGCTGA	0.468													60	70					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42804074	42804074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:42804074C>T	uc002yzh.2	+	7	1024	c.77C>T	c.(76-78)GCT>GTT	p.A26V	MX1_uc002yzi.2_Missense_Mutation_p.A26V|MX1_uc010goq.2_Missense_Mutation_p.A26V	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	26					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				AATGGAGATGCTACTGTGGCC	0.488													11	65					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42813676	42813676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:42813676G>A	uc002yzh.2	+	12	1711	c.764G>A	c.(763-765)GGA>GAA	p.G255E	MX1_uc002yzi.2_Missense_Mutation_p.G255E|MX1_uc010goq.2_Missense_Mutation_p.G255E	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	255					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				GTGGACAAAGGAACTGAAGAC	0.542													21	81					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42824580	42824580	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:42824580G>A	uc002yzh.2	+	18	2489	c.1542G>A	c.(1540-1542)GAG>GAA	p.E514E	MX1_uc002yzi.2_Silent_p.E514E|MX1_uc010goq.2_Silent_p.E514E	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	514					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				CAGAACAAGAGAGAGAAGGTG	0.433													22	82					0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43221841	43221841	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43221841C>T	uc002yzq.1	-	31	4194	c.4083G>A	c.(4081-4083)TCG>TCA	p.S1361S	PRDM15_uc002yzo.2_Silent_p.S1032S|PRDM15_uc002yzp.2_Silent_p.S1052S|PRDM15_uc002yzr.1_Silent_p.S1052S	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1361					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGACTGAGCTCGATGGTGTGG	0.542													25	50					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43339046	43339046	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43339046C>T	uc002yzw.2	-	4	758	c.516G>A	c.(514-516)AAG>AAA	p.K172K	C2CD2_uc002yzu.2_Silent_p.K4K|C2CD2_uc002yzv.2_Silent_p.K17K|C2CD2_uc002yzx.1_Silent_p.K17K	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	172						cytosol|extracellular region|nucleus				ovary(1)	1						GGTCCTCTCTCTTCTCCTTCA	0.418													19	51					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43504285	43504285	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43504285C>T	uc002zaf.1	+	3	411	c.411C>T	c.(409-411)ATC>ATT	p.I137I	UMODL1_uc002zad.1_Silent_p.I65I|UMODL1_uc002zae.1_Silent_p.I65I|UMODL1_uc002zag.1_Silent_p.I137I|UMODL1_uc010gow.1_5'Flank|UMODL1_uc002zai.1_5'Flank|UMODL1_uc010gox.1_5'Flank|UMODL1_uc010goy.1_5'Flank|UMODL1_uc002zaj.1_5'Flank|UMODL1_uc010goz.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	137	Extracellular (Potential).|WAP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GCTTGGACATCGACTGTCCTG	0.642													30	116					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43508457	43508457	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43508457C>T	uc002zaf.1	+	5	657	c.657C>T	c.(655-657)GCC>GCT	p.A219A	UMODL1_uc002zad.1_Silent_p.A147A|UMODL1_uc002zae.1_Silent_p.A147A|UMODL1_uc002zag.1_Silent_p.A219A|UMODL1_uc010gow.1_Silent_p.A11A|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Intron|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Silent_p.A11A	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	219	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGCACTCAGCCCCTGGGAACG	0.612													14	14					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43539310	43539310	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43539310C>T	uc002zaf.1	+	15	2565	c.2565C>T	c.(2563-2565)ATC>ATT	p.I855I	UMODL1_uc002zad.1_Silent_p.I783I|UMODL1_uc002zae.1_Silent_p.I911I|UMODL1_uc002zag.1_Silent_p.I983I|UMODL1_uc002zal.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	855	Extracellular (Potential).|SEA 2.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						ACGGCAGCATCGTGGTGGAGT	0.597													66	199					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43543182	43543182	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43543182C>T	uc002zaf.1	+	17	3069	c.3069C>T	c.(3067-3069)TCC>TCT	p.S1023S	UMODL1_uc002zad.1_Silent_p.S951S|UMODL1_uc002zae.1_Silent_p.S1079S|UMODL1_uc002zag.1_Silent_p.S1151S|UMODL1_uc002zal.1_5'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1023	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GCCACCCCTCCTGCAACGTGA	0.617													7	38					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547329	43547329	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43547329C>T	uc002zaf.1	+	19	3507	c.3507C>T	c.(3505-3507)ATC>ATT	p.I1169I	UMODL1_uc002zad.1_Silent_p.I1097I|UMODL1_uc002zae.1_Silent_p.I1225I|UMODL1_uc002zag.1_Silent_p.I1297I|UMODL1_uc002zal.1_Silent_p.I119I|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1169	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGGACCCCATCACCTTCAGCT	0.557													10	47					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43704778	43704778	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43704778C>T	uc002zaq.2	+	7	949	c.843C>T	c.(841-843)TTC>TTT	p.F281F	ABCG1_uc002zan.2_Silent_p.F283F|ABCG1_uc002zam.2_Silent_p.F259F|ABCG1_uc002zao.2_Silent_p.F278F|ABCG1_uc002zap.2_Silent_p.F281F|ABCG1_uc002zar.2_Silent_p.F292F|ABCG1_uc011aev.1_Silent_p.F292F|ABCG1_uc010gpb.1_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	281	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	CCAAACTCTTCGAGCTGTTCG	0.627													14	56					0	0	1	0	0
UBASH3A	53347	broad.mit.edu	37	21	43864744	43864744	+	Silent	SNP	C	T	T	rs61735848		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:43864744C>T	uc002zbe.2	+	14	1875	c.1839C>T	c.(1837-1839)CTC>CTT	p.L613L	UBASH3A_uc002zbf.2_Silent_p.L575L|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	613	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						TTGCCCAACTCGTGAGAAAGG	0.557													70	64					0	0	1	0	0
SIK1	150094	broad.mit.edu	37	21	44837539	44837539	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:44837539G>A	uc002zdf.2	-	13	1987	c.1860C>T	c.(1858-1860)GCC>GCT	p.A620A		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	620					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						CGCCCCTGCTGGCCCGGCTGG	0.716													4	14					0	0	1	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45518270	45518271	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45518270_45518271CC>TT	uc002zea.2	+	21	3370_3371	c.3201_3202CC>TT	c.(3199-3204)CCCCCT>CCTTCT	p.P1068S	TRAPPC10_uc010gpo.2_Missense_Mutation_p.P779S|TRAPPC10_uc011afa.1_Missense_Mutation_p.P446S|TRAPPC10_uc011afb.1_Missense_Mutation_p.P173S	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1068					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						AGATCTTTCCCCCTTCGGGAAT	0.485													65	73					0	0	1	0	0
DNMT3L	29947	broad.mit.edu	37	21	45670779	45670779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45670779C>T	uc002zeg.1	-	10	1307	c.823G>A	c.(823-825)GGC>AGC	p.G275S	DNMT3L_uc002zeh.1_Missense_Mutation_p.G275S	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	275					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CTGGGGCTGCCTGGCTTGGGC	0.662													6	26					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45773598	45773598	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45773598C>T	uc002zet.1	+	2	228	c.15C>T	c.(13-15)GCC>GCT	p.A5A	TRPM2_uc002zeu.1_Silent_p.A5A|TRPM2_uc002zew.1_Silent_p.A5A|TRPM2_uc010gpt.1_Silent_p.A5A	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	5	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCCCTCAGCCCTGAGGAAAG	0.632													7	2					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45786747	45786747	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45786747G>A	uc002zet.1	+	5	747	c.534G>A	c.(532-534)AAG>AAA	p.K178K	TRPM2_uc002zeu.1_Silent_p.K178K|TRPM2_uc002zew.1_Silent_p.K178K|TRPM2_uc010gpt.1_Silent_p.K178K|TRPM2_uc002zex.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	178	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGGGGGCCAAGAACTTCAACA	0.617													17	41					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45833925	45833925	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45833925C>T	uc002zet.1	+	21	3327	c.3114C>T	c.(3112-3114)ATC>ATT	p.I1038I	TRPM2_uc002zeu.1_Silent_p.I1038I|TRPM2_uc002zew.1_Silent_p.I1038I|TRPM2_uc010gpt.1_Silent_p.I1038I|TRPM2_uc002zex.1_Silent_p.I824I|TRPM2_uc002zey.1_Silent_p.I551I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1038	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCACCAACATCCTGCTGCTCA	0.657													122	162					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45861608	45861608	+	Nonsense_Mutation	SNP	C	T	T	rs138426423		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45861608C>T	uc002zet.1	+	33	4633	c.4420C>T	c.(4420-4422)CGA>TGA	p.R1474*	TRPM2_uc002zeu.1_Nonsense_Mutation_p.R1474*|TRPM2_uc002zew.1_Nonsense_Mutation_p.R1474*|TRPM2_uc010gpt.1_Nonsense_Mutation_p.R1524*|TRPM2_uc002zex.1_Nonsense_Mutation_p.R1260*|TRPM2_uc002zey.1_Nonsense_Mutation_p.R953*|TRPM2_uc011aff.1_Nonsense_Mutation_p.R155*	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1474	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGCCTCCATCCGATGGCAGGT	0.652													14	23					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959630	45959630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45959630G>A	uc002zfh.1	-	1	449	c.404C>T	c.(403-405)TCC>TTC	p.S135F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	135	Poly-Ser.|11.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						CTGGCTGGAGGAAGAGGCACA	0.453													21	109					0	0	1	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45970796	45970796	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45970796G>A	uc002zfi.1	-	1	593	c.546C>T	c.(544-546)TGC>TGT	p.C182C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	182	16.|22 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)	1						CGGACACACAGCAGGACTGCT	0.612													24	98					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45987722	45987722	+	Missense_Mutation	SNP	G	A	A	rs140976669		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:45987722G>A	uc002zfe.1	-	2	316	c.250C>T	c.(250-252)CCT>TCT	p.P84S	C21orf29_uc010gpv.1_Missense_Mutation_p.P16S	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	84	TSP N-terminal.				cell adhesion	extracellular region	structural molecule activity				0						AATTCTTCAGGGAAGAGGTCA	0.517													35	37					0	0	1	0	0
PCBP3	54039	broad.mit.edu	37	21	47360066	47360066	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:47360066G>A	uc002zhq.1	+	13	1157	c.1032G>A	c.(1030-1032)ACG>ACA	p.T344T	PCBP3_uc002zhp.1_Silent_p.T324T|PCBP3_uc002zhs.1_Silent_p.T318T|PCBP3_uc002zhr.1_Silent_p.T343T|PCBP3_uc002zht.1_Silent_p.T334T	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	344	KH 3.				mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		TCACCATCACGGGGACCCCGG	0.577													14	45					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47410319	47410319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:47410319G>A	uc002zhu.1	+	13	1087	c.985G>A	c.(985-987)GGG>AGG	p.G329R		NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	329	Triple-helical region.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	TGGCATCGACGGGGTGGACGG	0.438													23	21					0	0	1	0	0
COL6A1	1291	broad.mit.edu	37	21	47423852	47423852	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr21:47423852C>T	uc002zhu.1	+	35	3114	c.3012C>T	c.(3010-3012)TTC>TTT	p.F1004F	COL6A1_uc010gqd.1_Silent_p.F335F|COL6A1_uc002zhv.1_Silent_p.F335F|COL6A1_uc002zhw.1_Silent_p.F98F	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	1004	C-terminal globular domain.|VWFA 3.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	GCCACCTGTTCCGTGTCCCCA	0.677													20	75					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													32	458					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287388	16287388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:16287388C>T	uc010gqp.2	-	1	550	c.498G>A	c.(496-498)ATG>ATA	p.M166I	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_5'UTR|POTEH_uc002zlj.1_Missense_Mutation_p.M1I	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	166										skin(1)	1						ACCTCGGCTCCATGAAAGCGC	0.592													28	172					0	0	1	0	0
HSFYL1	27437	broad.mit.edu	37	22	17308801	17308801	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:17308801C>T	uc010gqr.1	+	1		c.438C>T				NR_003607				Homo sapiens Cat Eye Syndrome critical region 8 mRNA sequence.												0						AATAAAGGCTCCTTACAGAAT	0.303													2	1					0	0	1	0	0
CECR2	27443	broad.mit.edu	37	22	17983972	17983972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:17983972C>T	uc010gqw.1	+	6	794	c.668C>T	c.(667-669)TCC>TTC	p.S223F	CECR2_uc010gqv.1_Missense_Mutation_p.S102F|CECR2_uc002zml.2_Missense_Mutation_p.S102F|CECR2_uc002zmm.1_Missense_Mutation_p.S102F	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	265					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GAGAGGACCTCCCTTCGAGAA	0.572													30	55					0	0	1	0	0
SLC25A18	83733	broad.mit.edu	37	22	18066229	18066229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:18066229G>A	uc002zmp.1	+	7	832	c.338G>A	c.(337-339)GGG>GAG	p.G113E	SLC25A18_uc010gqx.2_Missense_Mutation_p.G113E|SLC25A18_uc002zmq.1_Missense_Mutation_p.G113E	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	113	Helical; Name=3; (Potential).|Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	TGTGGGGCTGGGATGTGCCAG	0.622													10	192					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18301668	18301668	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:18301668G>A	uc002zng.3	-	26	4112	c.3759C>T	c.(3757-3759)CCC>CCT	p.P1253P	MICAL3_uc011agl.1_Silent_p.P1169P	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1253	Pro-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GGCTGGGTGGGGGCGTGGAGG	0.692													19	71					0	0	1	0	0
PEX26	55670	broad.mit.edu	37	22	18566338	18566338	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:18566338G>A	uc002znp.3	+	4	716	c.507G>A	c.(505-507)CTG>CTA	p.L169L	TUBA8_uc002znr.2_Intron|PEX26_uc002znq.3_Silent_p.L169L|PEX26_uc002znt.2_Silent_p.L169L	NM_017929	NP_060399	Q7Z412	PEX26_HUMAN	peroxisome biogenesis factor 26	169	Cytoplasmic (Potential).				protein import into peroxisome matrix|protein import into peroxisome membrane	integral to peroxisomal membrane	protein C-terminus binding|protein complex binding			skin(1)	1						GGGTGCTGCTGCCTCTGGGCT	0.582													30	105					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18846126	18846126	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:18846126G>A	uc002zoe.2	+	5		c.2488G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		ACTGGCGCACGATGTAGGGCA	0.617													27	42					0	0	1	0	0
HIRA	7290	broad.mit.edu	37	22	19385519	19385519	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:19385519G>A	uc002zpf.1	-	6	709	c.489C>T	c.(487-489)TTC>TTT	p.F163F	HIRA_uc011agx.1_Silent_p.F29F|HIRA_uc010grn.1_Silent_p.F163F|HIRA_uc010gro.1_Silent_p.F119F|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	163	WD 3.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					CCAGACCTGGGAACTTTACAG	0.532													15	48					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	20293997	20293997	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:20293997C>T	uc002zrw.1	+	1		c.2437C>T								Homo sapiens mRNA for KIAA1653 protein, partial cds.																		GACAGGACAGCTGGAGCCCCT	0.622													13	57					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21107308	21107308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:21107308G>A	uc002zsz.3	-	25	2927	c.2696C>T	c.(2695-2697)ACC>ATC	p.T899I		NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	899					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GTTCTCCTTGGTCTTGGCCTA	0.532													23	254					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23006960	23006961	+	RNA	DNP	CC	AT	AT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23006960_23006961CC>AT	uc011aim.1	+	119		c.7563_7564CC>AT								Parts of antibodies, mostly variable regions.												0						GGGCTCTGCTCCTCCTCACCCT	0.629													3	3					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23029744	23029744	+	RNA	SNP	C	T	T	rs113957669		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23029744C>T	uc011aim.1	+	128		c.8383C>T								Parts of antibodies, mostly variable regions.												0						TGGTACTTATCCCACAGTGAC	0.522													8	49					0	0	1	0	0
RTDR1	27156	broad.mit.edu	37	22	23404098	23404098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23404098C>T	uc002zwt.2	-	6	837	c.679G>A	c.(679-681)GTG>ATG	p.V227M		NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	227							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		AAATGACACACCTGTTTCTTG	0.582													14	24					0	0	1	0	0
RAB36	9609	broad.mit.edu	37	22	23498191	23498191	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23498191C>T	uc002zwv.1	+	6	604	c.564C>T	c.(562-564)ATC>ATT	p.I188I	RAB36_uc010gtw.1_Silent_p.I166I	NM_004914	NP_004905	O95755	RAB36_HUMAN	RAB36, member RAS oncogene family	188					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.155)		TCAAGTGCATCGCATCTGCCT	0.592													10	10					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23523165	23523166	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23523165_23523166CT>TC	uc002zww.2	+	1	614_615	c.18_19CT>TC	c.(16-21)GGCTTC>GGTCTC	p.F7L	BCR_uc002zwx.2_Missense_Mutation_p.F7L	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	7	Kinase.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						ACCCGGTGGGCTTCGCGGAGGC	0.485			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								10	12					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23596140	23596140	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:23596140C>T	uc002zww.2	+	2	2030	c.1434C>T	c.(1432-1434)GTC>GTT	p.V478V	BCR_uc002zwx.2_Silent_p.V478V|BCR_uc011aiy.1_Silent_p.V67V|BCR_uc010gtx.1_5'UTR	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	478					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						ATGCGCTGGTCTCGGGAGCCC	0.667			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								6	22					0	0	1	0	0
SUSD2	56241	broad.mit.edu	37	22	24579086	24579086	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:24579086G>A	uc002zzn.1	+	2	182	c.138G>A	c.(136-138)CCG>CCA	p.P46P		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	46	Extracellular (Potential).|SMB.				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCTGCCACCCGACGTGCTCTG	0.632													50	269					0	0	1	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659644	24659644	+	RNA	SNP	T	C	C	rs28539511	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:24659644T>C	uc002zzs.3	+	7		c.3376T>C			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						GCCGGACACGTGGTAGATGCC	0.652													20	18					0	0	1	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659734	24659734	+	RNA	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:24659734T>C	uc002zzs.3	+	7		c.3466T>C			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CTCTCTCCTGTGGGAGGGGGG	0.632													3	16					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25145419	25145419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:25145419G>A	uc003abd.1	-	11	1703	c.1286C>T	c.(1285-1287)CCA>CTA	p.P429L	PIWIL3_uc011ajx.1_Missense_Mutation_p.P320L|PIWIL3_uc011ajy.1_Missense_Mutation_p.P320L|PIWIL3_uc010gut.1_Missense_Mutation_p.P429L	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	429					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						CCTTCTTCTTGGACTCAATCT	0.353													20	19					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25152461	25152461	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:25152461C>T	uc003abd.1	-	5	984	c.567G>A	c.(565-567)GAG>GAA	p.E189E	PIWIL3_uc011ajx.1_Silent_p.E80E|PIWIL3_uc011ajy.1_Silent_p.E80E|PIWIL3_uc010gut.1_Silent_p.E189E	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	189					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						ACTTAACCCGCTCTTTTAGTG	0.328													7	14					0	0	1	0	0
TMEM211	255349	broad.mit.edu	37	22	25331387	25331387	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:25331387C>T	uc003abk.1	-	3	328	c.303G>A	c.(301-303)TGG>TGA	p.W101*		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	172						integral to membrane					0						TTGTGTGGGGCCAGCTGATGA	0.527													29	44					0	0	1	0	0
TMEM211	255349	broad.mit.edu	37	22	25334156	25334156	+	Silent	SNP	C	T	T	rs138723870		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:25334156C>T	uc003abk.1	-	2	112	c.87G>A	c.(85-87)AGG>AGA	p.R29R		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	100						integral to membrane					0						CACTGCTTCTCCTTGGGCACA	0.512													19	50					0	0	1	0	0
CRYBB3	1417	broad.mit.edu	37	22	25603033	25603033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:25603033C>T	uc003abo.1	+	6	562	c.490C>T	c.(490-492)CCC>TCC	p.P164S		NM_004076	NP_004067	P26998	CRBB3_HUMAN	crystallin, beta B3	164	Beta/gamma crystallin 'Greek key' 4.				visual perception		protein binding|structural constituent of eye lens				0						CTATGAGTTCCCCGGCTACCG	0.592													14	68					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26176129	26176129	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26176129C>T	uc003abz.1	+	9	2425	c.2175C>T	c.(2173-2175)TTC>TTT	p.F725F	MYO18B_uc003aca.1_Silent_p.F606F|MYO18B_uc010guy.1_Silent_p.F606F|MYO18B_uc010guz.1_Silent_p.F606F|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Silent_p.F238F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	725	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGCTGGACTTCAACGCTACAG	0.642													10	3					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26224745	26224745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26224745C>T	uc003abz.1	+	15	3039	c.2789C>T	c.(2788-2790)TCC>TTC	p.S930F	MYO18B_uc003aca.1_Missense_Mutation_p.S811F|MYO18B_uc010guy.1_Missense_Mutation_p.S811F|MYO18B_uc010guz.1_Missense_Mutation_p.S811F|MYO18B_uc011aka.1_Missense_Mutation_p.S84F|MYO18B_uc011akb.1_Missense_Mutation_p.S443F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	930	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTCCCTAGATCCTTTTCCTCC	0.443													16	45					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26348357	26348357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26348357G>A	uc003abz.1	+	38	6188	c.5938G>A	c.(5938-5940)GAG>AAG	p.E1980K	MYO18B_uc003aca.1_Missense_Mutation_p.E1861K|MYO18B_uc010guy.1_Missense_Mutation_p.E1862K|MYO18B_uc010guz.1_Missense_Mutation_p.E1860K|MYO18B_uc011aka.1_Missense_Mutation_p.E1134K|MYO18B_uc011akb.1_Missense_Mutation_p.E1493K|MYO18B_uc010gva.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1980	Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAACAAGACAGAGTTCCAGAA	0.512													7	11					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26423531	26423531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26423531C>T	uc003abz.1	+	43	7841	c.7591C>T	c.(7591-7593)CCA>TCA	p.P2531S	MYO18B_uc003aca.1_Missense_Mutation_p.P2412S|MYO18B_uc010guy.1_Missense_Mutation_p.P2413S|MYO18B_uc010guz.1_Missense_Mutation_p.P2411S|MYO18B_uc011aka.1_Missense_Mutation_p.P1685S|MYO18B_uc011akb.1_Missense_Mutation_p.P2044S|MYO18B_uc010gva.1_Missense_Mutation_p.P514S|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2531						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACCAGGAATCCCACGACTTGC	0.582													9	23					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26692917	26692917	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26692917C>T	uc003acb.2	+	4	1189	c.1033C>T	c.(1033-1035)CTG>TTG	p.L345L	SEZ6L_uc003acc.2_Silent_p.L345L|SEZ6L_uc011akc.1_Silent_p.L345L|SEZ6L_uc003acd.2_Silent_p.L345L|SEZ6L_uc011akd.1_Silent_p.L345L|SEZ6L_uc003ace.2_Silent_p.L345L|SEZ6L_uc003acf.1_Silent_p.L118L|SEZ6L_uc010gvc.1_Silent_p.L118L	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	345	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CGGCCCTACCCTGACCGTCCT	0.612													11	27					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26709787	26709787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26709787C>T	uc003acb.2	+	9	2090	c.1934C>T	c.(1933-1935)CCC>CTC	p.P645L	SEZ6L_uc003acc.2_Missense_Mutation_p.P645L|SEZ6L_uc011akc.1_Missense_Mutation_p.P645L|SEZ6L_uc003acd.2_Missense_Mutation_p.P645L|SEZ6L_uc011akd.1_Missense_Mutation_p.P645L|SEZ6L_uc003ace.2_Missense_Mutation_p.P645L|SEZ6L_uc003acf.1_Missense_Mutation_p.P418L|SEZ6L_uc010gvc.1_Missense_Mutation_p.P418L	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	645	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CCAAACTGGCCCGAGCCCTAC	0.483													21	71					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26736439	26736439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26736439G>A	uc003acb.2	+	10	2209	c.2053G>A	c.(2053-2055)GAT>AAT	p.D685N	SEZ6L_uc003acc.2_Missense_Mutation_p.D685N|SEZ6L_uc011akc.1_Missense_Mutation_p.D685N|SEZ6L_uc003acd.2_Missense_Mutation_p.D685N|SEZ6L_uc011akd.1_Missense_Mutation_p.D685N|SEZ6L_uc003ace.2_Missense_Mutation_p.D685N|SEZ6L_uc003acf.1_Missense_Mutation_p.D458N|SEZ6L_uc010gvc.1_Missense_Mutation_p.D458N	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	685	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GACCATCTACGATGGCGACGA	0.517													121	65					0	0	1	0	0
HPS4	89781	broad.mit.edu	37	22	26875323	26875323	+	Splice_Site	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26875323T>C	uc003acl.2	-	3	701	c.42_splice	c.e3-1	p.W14_splice	HPS4_uc003aci.2_Missense_Mutation_p.R9G|HPS4_uc003acj.2_5'UTR|HPS4_uc003ack.2_Splice_Site|HPS4_uc003acn.2_Splice_Site|HPS4_uc010gvd.1_Splice_Site_p.W14_splice|HPS4_uc003aco.1_Missense_Mutation_p.R9G	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a						lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						TAATTCCACCTGGCAAGAGAA	0.438									Hermansky-Pudlak_syndrome				6	11					0	0	1	0	0
TPST2	8459	broad.mit.edu	37	22	26937305	26937305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:26937305C>T	uc003acv.2	-	2	460	c.292G>A	c.(292-294)GAG>AAG	p.E98K	TPST2_uc003acw.2_Missense_Mutation_p.E98K|TPST2_uc003acx.2_Missense_Mutation_p.E98K|TPST2_uc011akf.1_Missense_Mutation_p.E98K	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	98	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						CGGGTCTCCTCGCCGCAGCGC	0.692													10	17					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28195179	28195179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:28195179C>T	uc003adj.2	-	1	2308	c.1353G>A	c.(1351-1353)ATG>ATA	p.M451I		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	451							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						TGGCCACGTTCATGTAGGGGG	0.637			T	ETV6	AML|meningioma								16	13					0	0	1	0	0
C22orf31	25770	broad.mit.edu	37	22	29454859	29454860	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:29454859_29454860CC>TT	uc003aej.1	-	3	870_871	c.743_744GG>AA	c.(742-744)TGG>TAA	p.W248*		NM_015370	NP_056185	O95567	CV031_HUMAN	hypothetical protein LOC25770	248											0						AAAGAGCCTCCCAGAGCTTTTG	0.584													25	68					0	0	1	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656481	29656481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:29656481C>T	uc003aeq.1	-	6	1189	c.817G>A	c.(817-819)GCA>ACA	p.A273T	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	273						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						TCCAGGCCTGCCTCTGAGGAG	0.667													11	8					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30888114	30888114	+	Silent	SNP	G	A	A	rs145343277	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:30888114G>A	uc003aid.2	-	9	793	c.693C>T	c.(691-693)TTC>TTT	p.F231F	SEC14L4_uc011akz.1_Silent_p.F231F|SEC14L4_uc003aie.2_Silent_p.F216F|SEC14L4_uc003aif.2_Silent_p.F177F	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	231	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CGGGGCTGATGAATTTTGTCA	0.592													13	27					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31532914	31532914	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:31532914G>A	uc003aka.2	-	5	1308	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	393					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						AGTTGCAGTGGAAGAGGGGCT	0.682													3	6					0	0	1	0	0
LIMK2	3985	broad.mit.edu	37	22	31655934	31655934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:31655934C>T	uc003akh.2	+	5	567	c.422C>T	c.(421-423)TCT>TTT	p.S141F	LIMK2_uc003akg.2_Missense_Mutation_p.S58F|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.S120F|LIMK2_uc003akk.2_Missense_Mutation_p.S120F|LIMK2_uc011aln.1_Missense_Mutation_p.S58F	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	141						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						TCCACAGAGTCTGTTCAGGAG	0.607													21	51					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32275641	32275641	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:32275641C>T	uc003als.2	+	37	3985	c.3843C>T	c.(3841-3843)CTC>CTT	p.L1281L	DEPDC5_uc011als.1_Silent_p.L1212L|DEPDC5_uc011alu.1_Silent_p.L1312L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.L1303L|DEPDC5_uc003alu.2_Silent_p.L730L|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.L579L|DEPDC5_uc011alx.1_Silent_p.L129L|DEPDC5_uc010gwk.2_Silent_p.L307L|DEPDC5_uc011aly.1_Silent_p.L129L	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1281					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CTGCCTTTCTCCTGCCCTGGC	0.582													17	42					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	33673202	33673202	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:33673202G>A	uc003and.3	-	15	2496	c.1917C>T	c.(1915-1917)TTC>TTT	p.F639F	LARGE_uc011amd.1_Silent_p.F438F|LARGE_uc003ane.3_Silent_p.F639F|LARGE_uc010gwp.2_Silent_p.F587F|LARGE_uc011ame.1_Silent_p.F571F|LARGE_uc011amf.1_Silent_p.F590F	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	639	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				GCCACTTGGCGAAGTTTGTGG	0.582													5	36					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	34046486	34046486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:34046486G>A	uc003and.3	-	4	854	c.275C>T	c.(274-276)TCC>TTC	p.S92F	LARGE_uc003ane.3_Missense_Mutation_p.S92F|LARGE_uc010gwp.2_Missense_Mutation_p.S92F|LARGE_uc011ame.1_Missense_Mutation_p.S24F|LARGE_uc011amf.1_Missense_Mutation_p.S92F	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	92	Lumenal (Potential).|Potential.				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TCGGCGATGGGATGGGGCTCG	0.687													39	49					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36691047	36691047	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:36691047G>A	uc003apg.2	-	27	3792	c.3561C>T	c.(3559-3561)ATC>ATT	p.I1187I		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1187	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TCATCTCCTGGATCTGGGCCT	0.622			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				53	116					0	0	1	0	0
NCF4	4689	broad.mit.edu	37	22	37268389	37268389	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:37268389A>G	uc003apy.3	+	7	733	c.549A>G	c.(547-549)GGA>GGG	p.G183G	NCF4_uc003apz.3_Silent_p.G183G	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	183	SH3.				cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						ACTTCACTGGAAACAGCAAAC	0.363													29	67					0	0	1	0	0
MPST	4357	broad.mit.edu	37	22	37420837	37420837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:37420837C>T	uc003aqj.2	+	3	993	c.581C>T	c.(580-582)CCC>CTC	p.P194L	MPST_uc003aqi.1_Missense_Mutation_p.P194L|MPST_uc003aqm.2_Missense_Mutation_p.P194L|MPST_uc011amu.1_Missense_Mutation_p.P214L|MPST_uc003aql.2_Missense_Mutation_p.P194L|MPST_uc003aqn.2_Missense_Mutation_p.P194L|MPST_uc003aqo.2_Missense_Mutation_p.P194L	NM_001130517	NP_001123989	P25325	THTM_HUMAN	mercaptopyruvate sulfurtransferase isoform 2	194	Rhodanese 2.				cyanate catabolic process|response to toxin		3-mercaptopyruvate sulfurtransferase activity|thiosulfate sulfurtransferase activity				0						GGCACCGAGCCCGAGCCCCGA	0.647													12	8					0	0	1	0	0
SH3BP1	23616	broad.mit.edu	37	22	38049839	38049839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:38049839C>T	uc003ati.2	+	17	1763	c.1652C>T	c.(1651-1653)CCC>CTC	p.P551L	SH3BP1_uc003atg.1_RNA|SH3BP1_uc003ath.1_Missense_Mutation_p.P551L|SH3BP1_uc003atj.1_Missense_Mutation_p.P487L|SH3BP1_uc003atk.1_Missense_Mutation_p.P465L|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	551					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ACCAGGAGTCCCCCGGAGACA	0.662													11	15					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121819	38121819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:38121819C>T	uc003atr.2	+	7	3527	c.3256C>T	c.(3256-3258)CCC>TCC	p.P1086S	TRIOBP_uc003atu.2_Missense_Mutation_p.P914S|TRIOBP_uc003atq.1_Missense_Mutation_p.P1086S|TRIOBP_uc003ats.1_Missense_Mutation_p.P914S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1086					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TGACCCCTTCCCCTTCCTCCC	0.622													48	29					0	0	1	0	0
TAB1	10454	broad.mit.edu	37	22	39772134	39772135	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:39772134_39772135CC>TT	uc003axr.2	+	2	1975_1976	c.193_194CC>TT	c.(193-195)CCA>TTA	p.P65L	SYNGR1_uc003axo.3_Missense_Mutation_p.P139L|SYNGR1_uc003axp.3_Missense_Mutation_p.P105L|SYNGR1_uc003axq.3_Missense_Mutation_p.P139L|SYNGR1_uc003axs.3_Missense_Mutation_p.P140L	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	Error:Variant_position_missing_in_Q15750_after_alignment					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CAAGGACAACCCACTGAACGAA	0.634													26	106					0	0	1	0	0
TAB1	10454	broad.mit.edu	37	22	39812855	39812855	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:39812855G>A	uc003axt.2	+	4	433	c.384G>A	c.(382-384)AAG>AAA	p.K128K	TAB1_uc003axr.2_Silent_p.K204K|TAB1_uc011aok.1_5'UTR|TAB1_uc003axu.1_Silent_p.K128K	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	128	PP2C-like.				activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						TGGCTGAGAAGGCAAGCCTCC	0.572													20	42					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40073416	40073416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:40073416G>A	uc003ayc.2	+	30	4925	c.4925G>A	c.(4924-4926)GGG>GAG	p.G1642E	CACNA1I_uc003ayd.2_Missense_Mutation_p.G1607E|CACNA1I_uc003aye.2_Missense_Mutation_p.G1557E|CACNA1I_uc003ayf.2_Missense_Mutation_p.G1522E	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1642	Helical; Name=S5 of repeat IV; (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GAGCTCTTTGGGAAGCTGGGT	0.677													3	6					0	0	1	0	0
SGSM3	27352	broad.mit.edu	37	22	40803046	40803047	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:40803046_40803047GG>AA	uc003ayu.1	+	11	1420_1421	c.1211_1212GG>AA	c.(1210-1212)AGG>AAA	p.R404K	SGSM3_uc011aos.1_Missense_Mutation_p.R337K|SGSM3_uc011aot.1_Missense_Mutation_p.R341K|SGSM3_uc010gyd.1_Missense_Mutation_p.R404K	NM_015705	NP_056520	Q96HU1	SGSM3_HUMAN	small G protein signaling modulator 3	404					cell cycle arrest|Rap protein signal transduction	cytoplasm	Rab GTPase activator activity|Rab GTPase binding			ovary(2)	2						ACCCAGCGGAGGAAGTCCACCA	0.629													4	1					0	0	1	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257813	41257813	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:41257813C>T	uc003azj.2	-	1	318	c.186G>A	c.(184-186)CGG>CGA	p.R62R	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_RNA|XPNPEP3_uc003azf.1_RNA|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	62	J.				protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						CATAAATGTCCCGTTTCTCAT	0.378													39	127					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41573875	41573875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:41573875C>T	uc003azl.3	+	31	6555	c.6160C>T	c.(6160-6162)CTT>TTT	p.L2054F		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2054	Interaction with HTLV-1 Tax.|Interaction with NCOA2.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CTTACAAAACCTTTTGCGGAC	0.537			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				28	73					0	0	1	0	0
MEI1	150365	broad.mit.edu	37	22	42150007	42150007	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:42150007C>T	uc003baz.1	+	17	1933	c.1908C>T	c.(1906-1908)AAC>AAT	p.N636N	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Silent_p.N4N|MEI1_uc003bbc.1_Silent_p.N4N|MEI1_uc010gym.1_Silent_p.N4N	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	636							binding			central_nervous_system(1)|skin(1)	2						TGTGCCTCAACCTTCTCTCAG	0.453													27	57					0	0	1	0	0
SREBF2	6721	broad.mit.edu	37	22	42267008	42267008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:42267008C>T	uc003bbi.2	+	4	1005	c.836C>T	c.(835-837)ACC>ATC	p.T279I	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	279	Interaction with LMNA (By similarity).|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						GCCCTCACCACCCCTATCCAG	0.562													34	90					0	0	1	0	0
WBP2NL	164684	broad.mit.edu	37	22	42415784	42415784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:42415784G>A	uc011ape.1	+	4	306	c.290G>A	c.(289-291)GGA>GAA	p.G97E	WBP2NL_uc003bbt.2_Missense_Mutation_p.G97E|WBP2NL_uc011apk.1_Intron|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	97					egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						TTCATTAAGGGAACTATTCAG	0.388													33	108					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42608391	42608391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:42608391G>A	uc003bcj.1	-	1	3055	c.2921C>T	c.(2920-2922)TCC>TTC	p.S974F	TCF20_uc003bck.1_Missense_Mutation_p.S974F|TCF20_uc003bnt.2_Missense_Mutation_p.S974F	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	974					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GTCTGAAAGGGAATCATGGGT	0.582													21	91					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43619153	43619153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:43619153C>T	uc003bdt.1	-	11	1365	c.1277G>A	c.(1276-1278)GGT>GAT	p.G426D		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	426					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GCTCTCCACACCGCCTGCCTT	0.627													38	114					0	0	1	0	0
PNPLA5	150379	broad.mit.edu	37	22	44285212	44285212	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:44285212G>A	uc003beg.2	-	4	796	c.699C>T	c.(697-699)CTC>CTT	p.L233L	PNPLA5_uc011aqc.1_Silent_p.L93L|PNPLA5_uc003beh.2_Silent_p.L119L	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	233					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				GACCTACCTCGAGGCTGGGGG	0.582													29	50					0	0	1	0	0
PNPLA3	80339	broad.mit.edu	37	22	44328958	44328958	+	Silent	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:44328958G>C	uc003bei.1	+	4	860	c.687G>C	c.(685-687)CCG>CCC	p.P229P	PNPLA3_uc010gzm.1_RNA	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	229	Lumenal (Potential).				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				TTGTCCCCCCGGATCTCAAGG	0.537													36	28					0	0	1	0	0
PNPLA3	80339	broad.mit.edu	37	22	44328960	44328960	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:44328960A>G	uc003bei.1	+	4	862	c.689A>G	c.(688-690)GAT>GGT	p.D230G	PNPLA3_uc010gzm.1_RNA	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	230	Lumenal (Potential).				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				GTCCCCCCGGATCTCAAGGTG	0.542													34	28					0	0	1	0	0
NUP50	10762	broad.mit.edu	37	22	45574414	45574414	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:45574414T>C	uc003bfr.2	+	5	1098	c.636T>C	c.(634-636)TCT>TCC	p.S212S	NUP50_uc003bfs.2_Silent_p.S184S|NUP50_uc011aqn.1_5'UTR|NUP50_uc003bft.2_Silent_p.S184S|NUP50_uc011aqo.1_5'UTR	NM_007172	NP_009103	Q9UKX7	NUP50_HUMAN	nucleoporin 50kDa isoform b	212	5 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|intracellular transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore|nucleoplasm	protein binding				0		Ovarian(80;0.00965)|all_neural(38;0.0244)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		AAAGTGAATCTAACAAAGTGG	0.393													10	34					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46760421	46760421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:46760421C>T	uc003bhw.1	-	33	8767	c.8767G>A	c.(8767-8769)GAG>AAG	p.E2923K		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2923	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TTCCTCTGCTCTGGGGGCTGG	0.701													13	30					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46932242	46932242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:46932242C>T	uc003bhw.1	-	1	826	c.826G>A	c.(826-828)GAG>AAG	p.E276K		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	276	Extracellular (Potential).|Cadherin 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CGCTCCTCCTCGCCCTCGATG	0.632													26	42					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50553640	50553640	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50553640G>A	uc003bjj.2	+	8	1307	c.1224G>A	c.(1222-1224)GGG>GGA	p.G408G	MOV10L1_uc003bjk.3_Silent_p.G408G|MOV10L1_uc011arp.1_Silent_p.G388G|MOV10L1_uc011arq.1_Silent_p.G169G|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	408					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TCCCTCCAGGGGGAAAAACCT	0.493													53	118					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50599144	50599144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50599144G>A	uc003bjj.2	+	25	3435	c.3352G>A	c.(3352-3354)GAT>AAT	p.D1118N	MOV10L1_uc003bjk.3_Intron|MOV10L1_uc011arp.1_Missense_Mutation_p.D1098N|MOV10L1_uc003bjl.2_Missense_Mutation_p.D245N	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1118					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TAGATTTGAAGATGATCGATA	0.383													18	26					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50717035	50717035	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50717035A>G	uc003bkv.3	-	29	4743	c.4637T>C	c.(4636-4638)ATG>ACG	p.M1546T	PLXNB2_uc003bkt.1_Missense_Mutation_p.M338T|PLXNB2_uc003bku.1_Missense_Mutation_p.M531T	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1546	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ATTGTAGTGCATAAGGGTGTT	0.677													8	9					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50724519	50724519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50724519G>A	uc003bkv.3	-	10	1992	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	629	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCTCACGCAGGAGATGCACCT	0.667													20	42					0	0	1	0	0
SBF1	6305	broad.mit.edu	37	22	50893737	50893737	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50893737G>A	uc003blh.2	-	33	4665	c.4470C>T	c.(4468-4470)TTC>TTT	p.F1490F	SBF1_uc003ble.2_5'UTR|SBF1_uc003blf.2_5'UTR|SBF1_uc011arx.1_Silent_p.F1128F	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1464	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CACGGTGGCTGAAGCGATGGC	0.642													28	19					0	0	1	0	0
SBF1	6305	broad.mit.edu	37	22	50901136	50901136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:50901136G>A	uc003blh.2	-	18	2174	c.1979C>T	c.(1978-1980)CCG>CTG	p.P660L	SBF1_uc011arx.1_Missense_Mutation_p.P324L|SBF1_uc003bli.2_Missense_Mutation_p.P661L	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	660					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CGTCACCCCCGGGCTCAGCTT	0.632													9	16					0	0	1	0	0
ARSA	410	broad.mit.edu	37	22	51063801	51063801	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr22:51063801G>A	uc003bnb.3	-	9	1549	c.1296C>T	c.(1294-1296)TCC>TCT	p.S432S	ARSA_uc003bna.3_Silent_p.S348S|ARSA_uc003bnc.3_Silent_p.S432S|ARSA_uc003bnd.3_Silent_p.S432S|ARSA_uc003bmz.3_Silent_p.S432S	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	432						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	CAGGGTCCTTGGACAGGTCAT	0.637													38	98					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	382482	382482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:382482C>T	uc003bou.2	+	6	662	c.391C>T	c.(391-393)CCA>TCA	p.P131S	CHL1_uc003bot.2_Missense_Mutation_p.P131S|CHL1_uc003bow.1_Missense_Mutation_p.P131S|CHL1_uc011asi.1_Missense_Mutation_p.P131S	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	131	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ACCAGGTGTTCCAAAATTCCC	0.338													4	26					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	382592	382592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:382592G>A	uc003bou.2	+	6	772	c.501G>A	c.(499-501)ATG>ATA	p.M167I	CHL1_uc003bot.2_Missense_Mutation_p.M167I|CHL1_uc003bow.1_Missense_Mutation_p.M167I|CHL1_uc011asi.1_Missense_Mutation_p.M167I	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	167	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTTATTGGATGAATATTGGTA	0.368													17	26					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	404985	404985	+	Missense_Mutation	SNP	G	A	A	rs143674187		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:404985G>A	uc003bou.2	+	13	1727	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K	CHL1_uc003bot.2_Missense_Mutation_p.E502K|CHL1_uc003bow.1_Missense_Mutation_p.E486K|CHL1_uc011asi.1_Missense_Mutation_p.E502K	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	486	Ig-like C2-type 5.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAGAACCACCGAAGAAGATGC	0.413													19	35					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1443140	1443140	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:1443140A>T	uc003boz.2	+	21	2995	c.2728A>T	c.(2728-2730)ATT>TTT	p.I910F	CNTN6_uc011asj.1_Missense_Mutation_p.I838F|CNTN6_uc003bpa.2_Missense_Mutation_p.I910F	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	910	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		ACCAGCAAACATTGCCTGGAA	0.373													20	6					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2924882	2924882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:2924882C>T	uc003bpc.2	+	8	927	c.706C>T	c.(706-708)CCG>TCG	p.P236S	CNTN4_uc003bpb.1_Intron|CNTN4_uc003bpd.1_Missense_Mutation_p.P236S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	236	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGAAACAGTTCCGACTGCAAA	0.433													11	12					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2942398	2942398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:2942398G>A	uc003bpc.2	+	10	1191	c.970G>A	c.(970-972)GAT>AAT	p.D324N	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.D324N|CNTN4_uc003bpe.2_5'UTR|CNTN4_uc003bpf.2_5'UTR	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	324	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAAAATAAATGATATTCACGT	0.353													13	49					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3030152	3030152	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:3030152G>A	uc003bpc.2	+	13	1703	c.1482G>A	c.(1480-1482)GTG>GTA	p.V494V	CNTN4_uc003bpb.1_Silent_p.V166V|CNTN4_uc003bpd.1_Silent_p.V494V|CNTN4_uc003bpe.2_Silent_p.V166V|CNTN4_uc003bpf.2_Silent_p.V166V	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	494					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ACTTGGTAGTGAAAGGTAATG	0.373													14	38					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3085292	3085292	+	Silent	SNP	C	T	T	rs144260163	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:3085292C>T	uc003bpc.2	+	22	2936	c.2715C>T	c.(2713-2715)CCC>CCT	p.P905P	CNTN4_uc003bpe.2_Silent_p.P577P|CNTN4_uc003bpf.2_Silent_p.P576P|CNTN4_uc003bpg.2_Silent_p.P161P	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	905	Fibronectin type-III 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GTCAACCCCCCGGAAACATCA	0.373													5	22					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3139681	3139681	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:3139681G>A	uc011ask.1	-	8	1226	c.582C>T	c.(580-582)ATC>ATT	p.I194I	IL5RA_uc010hbq.2_Silent_p.I194I|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Silent_p.I194I|IL5RA_uc011asl.1_Silent_p.I194I|IL5RA_uc011asm.1_Silent_p.I194I|IL5RA_uc010hbt.2_Silent_p.I194I|IL5RA_uc011asn.1_Silent_p.I194I|IL5RA_uc010hbu.2_Silent_p.I194I	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	194	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		ACCAGCATGCGATATTTCTCC	0.483													23	55					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7348333	7348333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:7348333G>A	uc003bqm.2	+	4	1301	c.1027G>A	c.(1027-1029)GTG>ATG	p.V343M	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.V343M|GRM7_uc003bql.2_Missense_Mutation_p.V343M|GRM7_uc003bqn.1_Translation_Start_Site	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	343	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GCGAGCCACGGTGGAAGGTAT	0.502													30	20					0	0	1	0	0
LMCD1	29995	broad.mit.edu	37	3	8609134	8609134	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:8609134C>T	uc003bqq.2	+	6	1062	c.948C>T	c.(946-948)TTC>TTT	p.F316F	LMCD1_uc011atd.1_Silent_p.F243F|LMCD1_uc011ate.1_Silent_p.F204F	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	316	LIM zinc-binding 2.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		AGATAATATTCGCTGAGGACT	0.532													101	173					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9074426	9074426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:9074426G>A	uc003brf.1	-	12	2123	c.1447C>T	c.(1447-1449)CTT>TTT	p.L483F	SRGAP3_uc003brg.1_Intron|SRGAP3_uc003bri.1_RNA	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	483	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TTAGGGGGAAGACAGGGGGGC	0.443			T	RAF1	pilocytic astrocytoma								42	20					0	0	1	0	0
ARPC4	10093	broad.mit.edu	37	3	9845661	9845661	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:9845661C>T	uc003bsz.1	+	5	1044	c.465C>T	c.(463-465)GCC>GCT	p.A155A	ARPC4_uc003bta.1_Silent_p.A65A|ARPC4_uc003btb.1_Silent_p.A65A|ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_Intron	NM_005718	NP_005709	P59998	ARPC4_HUMAN	actin related protein 2/3 complex subunit 4	155					actin filament polymerization|actin nucleation	Arp2/3 protein complex|cell projection|cytoplasm	actin binding				0	Medulloblastoma(99;0.227)					CAGTCAATGCCCGTGCCCGCA	0.488													40	65					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10105572	10105572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:10105572G>A	uc003buw.2	+	21	2002	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K	FANCD2_uc003bux.1_Missense_Mutation_p.E642K|FANCD2_uc003buy.1_Missense_Mutation_p.E642K|FANCD2_uc010hcw.1_RNA	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	642					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		GATCCAACATGAAAAGCTGGA	0.443			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				4	51					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10258730	10258730	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:10258730C>T	uc003bve.1	+	7	977	c.901C>T	c.(901-903)CAG>TAG	p.Q301*		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	301	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						ACTGCAGGGTCAGGTAAGGGA	0.547													53	27					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10387101	10387101	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:10387101C>T	uc003bvt.2	-	18	3109	c.2670G>A	c.(2668-2670)GTG>GTA	p.V890V	ATP2B2_uc003bvv.2_Silent_p.V845V|ATP2B2_uc003bvw.2_Silent_p.V845V|ATP2B2_uc010hdo.2_Silent_p.V595V	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	890	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGCCACAATCACGGCCACCA	0.617													25	23					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10443912	10443912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:10443912C>T	uc003bvt.2	-	4	957	c.518G>A	c.(517-519)TGG>TAG	p.W173*	ATP2B2_uc003bvv.2_Nonsense_Mutation_p.W173*|ATP2B2_uc003bvw.2_Nonsense_Mutation_p.W173*|ATP2B2_uc010hdp.2_Nonsense_Mutation_p.W173*|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	173	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTCTTTGCTCCAGTCATTGAA	0.597													52	136					0	0	1	0	0
ATG7	10533	broad.mit.edu	37	3	11389371	11389371	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:11389371C>T	uc003bwc.2	+	12	1263	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	ATG7_uc003bwd.2_Silent_p.I382I|ATG7_uc011aum.1_Silent_p.I343I	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	382					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						TGAGACACATCACATTTGTGG	0.478													11	46					0	0	1	0	0
PPARG	5468	broad.mit.edu	37	3	12422909	12422909	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:12422909C>T	uc003bwx.2	+	3	490	c.399C>T	c.(397-399)TCC>TCT	p.S133S	PPARG_uc003bwr.2_Silent_p.S105S|PPARG_uc003bws.2_Silent_p.S105S|PPARG_uc003bwu.2_Silent_p.S105S|PPARG_uc003bwv.2_Silent_p.S105S|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Silent_p.S105S|PPARG_uc003bwt.1_Silent_p.S105S|PPARG_uc003bww.1_Silent_p.S133S	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	133					activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CTTCCAACTCCCTCATGGCAA	0.423			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						90	287					0	0	1	0	0
CAND2	23066	broad.mit.edu	37	3	12856863	12856863	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:12856863G>A	uc003bxk.2	+	8	1279	c.1230G>A	c.(1228-1230)CCG>CCA	p.P410P	CAND2_uc003bxj.2_Silent_p.P317P	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	410					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						CACAGCCCCCGAAGGGATGGC	0.617													18	48					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13417045	13417045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:13417045G>A	uc003bxv.1	-	11	1473	c.1390C>T	c.(1390-1392)CCG>TCG	p.P464S	NUP210_uc003bxx.2_Missense_Mutation_p.P136S	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	464	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGTTGCCACGGAAATGTCAAG	0.527													34	102					0	0	1	0	0
WNT7A	7476	broad.mit.edu	37	3	13896136	13896136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:13896136C>T	uc003bye.1	-	3	768	c.463G>A	c.(463-465)GAC>AAC	p.D155N		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	155					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						TAGCGGATGTCGGCAGAGCAG	0.607													115	36					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14862731	14862731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:14862731C>T	uc003bzc.2	+	1	2263	c.2153C>T	c.(2152-2154)TCC>TTC	p.S718F	FGD5_uc011avk.1_Missense_Mutation_p.S718F	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	718					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCTTCTGAATCCCCCTCCTCC	0.577													11	52					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17053522	17053522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:17053522C>T	uc011awc.1	+	5	2765	c.2660C>T	c.(2659-2661)TCT>TTT	p.S887F	PLCL2_uc011awd.1_Missense_Mutation_p.S769F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	895					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGGGGCCTTTCTGTGAGAAAA	0.463													25	59					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17084422	17084422	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:17084422C>T	uc011awc.1	+	7	3156	c.3051C>T	c.(3049-3051)ATC>ATT	p.I1017I	PLCL2_uc011awd.1_Silent_p.I899I	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1025					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						ATGAAAAGATCGTACATTGTC	0.368													23	68					0	0	1	0	0
TBC1D5	9779	broad.mit.edu	37	3	17279834	17279834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:17279834G>A	uc003cbf.2	-	17	3074	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F	TBC1D5_uc010heu.2_Missense_Mutation_p.S57F|TBC1D5_uc010hev.2_Missense_Mutation_p.S470F|TBC1D5_uc003cbe.2_Missense_Mutation_p.S470F|TBC1D5_uc010hew.1_Missense_Mutation_p.S422F	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	470						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CATTGCTGGGGAAATCAACTT	0.473													12	22					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19491679	19491679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:19491679G>A	uc003cbk.1	+	9	1652	c.1457G>A	c.(1456-1458)AGA>AAA	p.R486K	KCNH8_uc011awe.1_Missense_Mutation_p.R486K|KCNH8_uc010hex.1_5'UTR|KCNH8_uc011awf.1_Missense_Mutation_p.R145K	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	486	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TATCACACTAGAACTAAGGAT	0.443													14	43					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19575316	19575316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:19575316G>A	uc003cbk.1	+	16	3244	c.3049G>A	c.(3049-3051)GAT>AAT	p.D1017N	KCNH8_uc010hex.1_Missense_Mutation_p.D478N	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	1017	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TCCACATTCAGATTCTACGTT	0.443													70	120					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21552411	21552411	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:21552411T>C	uc003cce.2	-	4	789	c.381A>G	c.(379-381)GCA>GCG	p.A127A	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	127						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AGGTAGTCTTTGCGCTGTCCT	0.468													66	24					0	0	1	0	0
NR1D2	9975	broad.mit.edu	37	3	24009368	24009368	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:24009368G>T	uc003ccs.2	+	7	1716	c.1397G>T	c.(1396-1398)GGA>GTA	p.G466V	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.G391V	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	466					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						TTTTTAAGTGGAAAGAAATAT	0.368													12	54					3.27435e-08	3.29093e-08	1	1	0
NEK10	152110	broad.mit.edu	37	3	27215978	27215978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:27215978C>T	uc010hfk.2	-	7	893	c.664G>A	c.(664-666)GAT>AAT	p.D222N	NEK10_uc003cds.1_Missense_Mutation_p.D307N|NEK10_uc010hfj.2_Missense_Mutation_p.D222N			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	910							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CTGGAGTTATCCGAAATGTCC	0.383													28	56					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32915324	32915324	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:32915324C>T	uc003cff.2	+	2	930	c.867C>T	c.(865-867)TAC>TAT	p.Y289Y		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	289	B box-type 2.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						TGCACCTGTACTGTGACACTT	0.597													95	319					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33058209	33058209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:33058209C>T	uc003cfi.1	-	14	1588	c.1471G>A	c.(1471-1473)GAT>AAT	p.D491N	GLB1_uc003cfh.1_Missense_Mutation_p.D461N|GLB1_uc003cfj.1_Missense_Mutation_p.D360N|GLB1_uc011axk.1_Missense_Mutation_p.D539N	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	491			D -> Y (in GM1G1).|D -> N (in GM1G1).		carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				ACCTTAAAATCGTTGATATAT	0.353													53	107					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35770831	35770831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:35770831C>T	uc003cgb.2	+	15	1526	c.1262C>T	c.(1261-1263)TCG>TTG	p.S421L	ARPP21_uc003cga.2_Missense_Mutation_p.S367L|ARPP21_uc011axy.1_Missense_Mutation_p.S387L|ARPP21_uc003cgf.2_Missense_Mutation_p.S222L|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	421	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TCCTCAGGATCGCTGTCCCGC	0.537													14	53					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35835204	35835204	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:35835204C>T	uc003cgb.2	+	20	2457	c.2193C>T	c.(2191-2193)ACC>ACT	p.T731T	ARPP21_uc003cga.2_Silent_p.T712T|ARPP21_uc011axy.1_Silent_p.T732T|ARPP21_uc003cgf.2_Silent_p.T567T|ARPP21_uc003cgg.2_Silent_p.T254T	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	731	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TGCCAATGACCCAGGGTTCTC	0.413													17	56					0	0	1	0	0
STAC	6769	broad.mit.edu	37	3	36422171	36422171	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:36422171G>A	uc003cgh.1	+	1	75	c.36G>A	c.(34-36)GTG>GTA	p.V12V	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Silent_p.V12V	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	12					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						AGGACGGCGTGGACGGGCTGC	0.701													6	16					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874177	36874177	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:36874177G>A	uc003cgj.2	-	12	5417	c.5115C>T	c.(5113-5115)TCC>TCT	p.S1705S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2255					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGAACCGGAAGGATTTGTAAT	0.453													53	31					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36875033	36875033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:36875033C>T	uc003cgj.2	-	12	4561	c.4259G>A	c.(4258-4260)AGA>AAA	p.R1420K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1970					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAGTGCTTCTCTCAGAATGTC	0.552													13	16					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36896877	36896877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:36896877C>T	uc003cgj.2	-	3	2856	c.2554G>A	c.(2554-2556)GAG>AAG	p.E852K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1402					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGCGCCAGCTCGGCCTGGGTA	0.557													61	104					0	0	1	0	0
OXSR1	9943	broad.mit.edu	37	3	38266089	38266089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38266089C>T	uc003chy.2	+	8	1072	c.730C>T	c.(730-732)CCT>TCT	p.P244S	OXSR1_uc010hhb.2_Missense_Mutation_p.P178S|OXSR1_uc010hha.1_Missense_Mutation_p.P176S	NM_005109	NP_005100	O95747	OXSR1_HUMAN	oxidative-stress responsive 1	244	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GCAGAACGATCCTCCTTCTTT	0.313													24	12					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38596027	38596027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38596027C>T	uc003cio.2	-	27	4750	c.4556G>A	c.(4555-4557)GGC>GAC	p.G1519D	SCN5A_uc003cin.2_Missense_Mutation_p.G1518D|SCN5A_uc003cil.3_Missense_Mutation_p.G1519D|SCN5A_uc010hhi.2_Missense_Mutation_p.G1501D|SCN5A_uc010hhk.2_Missense_Mutation_p.G1518D|SCN5A_uc011ayr.1_Missense_Mutation_p.G1465D	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1519					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GAATATGAAGCCCTGGTACTT	0.512													14	75					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38647555	38647555	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38647555G>A	uc003cio.2	-	10	1419	c.1225C>T	c.(1225-1227)CTG>TTG	p.L409L	SCN5A_uc003cin.2_Silent_p.L409L|SCN5A_uc003cil.3_Silent_p.L409L|SCN5A_uc010hhi.2_Silent_p.L409L|SCN5A_uc010hhk.2_Silent_p.L409L|SCN5A_uc011ayr.1_Silent_p.L409L|SCN5A_uc010hhj.1_Silent_p.L20L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	409	Helical; Name=S6 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACCACGGCCAGGATCAGGTTC	0.557													16	36					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38647622	38647622	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38647622C>T	uc003cio.2	-	10	1352	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	SCN5A_uc003cin.2_Silent_p.G386G|SCN5A_uc003cil.3_Silent_p.G386G|SCN5A_uc010hhi.2_Silent_p.G386G|SCN5A_uc010hhk.2_Silent_p.G386G|SCN5A_uc011ayr.1_Silent_p.G386G|SCN5A_uc010hhj.1_5'UTR	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	386					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGTAGATCTTCCCTGCGGACC	0.557													8	25					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38941395	38941395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38941395G>A	uc011ays.1	-	13	2211	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	671	Helical; Voltage-sensor; Name=S4 of repeat II; (By similarity).|II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CACTCTGAAGGAACGCAAGAA	0.413													6	20					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38991720	38991720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:38991720C>T	uc011ays.1	-	1	333	c.134G>A	c.(133-135)GGA>GAA	p.G45E		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	45					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGGTACTTCTCCTGTCTGGTC	0.527													108	60					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39225806	39225806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39225806G>A	uc003cjk.1	-	2	5352	c.5131C>T	c.(5131-5133)CAC>TAC	p.H1711Y	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.H394Y	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1711	Interaction with FLNC.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCTTTCTGGTGGAGCAGGGCC	0.572													40	66					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39226590	39226590	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39226590G>T	uc003cjk.1	-	2	4568	c.4347C>A	c.(4345-4347)CCC>CCA	p.P1449P	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Silent_p.P132P	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1449							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AACCTTCCATGGGCTGCTCTC	0.627													69	45					5.21738e-30	5.29244e-30	1	1	0
XIRP1	165904	broad.mit.edu	37	3	39227957	39227957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39227957G>A	uc003cjk.1	-	2	3201	c.2980C>T	c.(2980-2982)CCT>TCT	p.P994S	XIRP1_uc003cji.2_Missense_Mutation_p.P994S|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	994							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCCTGAGGAGGGCAAGGGGTG	0.602													16	51					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39230591	39230591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39230591C>T	uc003cjk.1	-	2	567	c.346G>A	c.(346-348)GAG>AAG	p.E116K	XIRP1_uc003cji.2_Missense_Mutation_p.E116K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	116							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AGCACGGGCTCCTTGGCAGCT	0.607													24	56					0	0	1	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307401	39307401	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39307401G>A	uc003cjl.2	-	2	692	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	200	Helical; Name=5; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GGGGGAGTAGGAAGCCAAGAA	0.463													33	80					0	0	1	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307821	39307821	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39307821C>T	uc003cjl.2	-	2	272	c.180G>A	c.(178-180)AAG>AAA	p.K60K		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	60	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TCTTGGGCTTCTTGCTGTTGG	0.478													16	64					0	0	1	0	0
RPSA	3921	broad.mit.edu	37	3	39452312	39452312	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:39452312C>G	uc003cjp.2	+	4	405	c.320C>G	c.(319-321)ACC>AGC	p.T107S	RPSA_uc003cjq.2_Missense_Mutation_p.T112S|RPSA_uc003cjr.2_Missense_Mutation_p.T107S|RPSA_uc003cjt.2_RNA|SNORA62_uc010hhs.2_5'Flank	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	107	Interaction with PPP1R16B.				cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		ACTCCTGGAACCTTCACTAAC	0.537													12	32					0	0	1	0	0
MYRIP	25924	broad.mit.edu	37	3	40251394	40251394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:40251394C>T	uc003cka.2	+	11	1850	c.1715C>T	c.(1714-1716)CCC>CTC	p.P572L	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Missense_Mutation_p.P572L|MYRIP_uc010hhw.2_Missense_Mutation_p.P483L|MYRIP_uc011ayz.1_Missense_Mutation_p.P385L|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	572	Actin-binding.				intracellular protein transport		actin binding|zinc ion binding	p.P572S(1)		ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		GCTCGGGATCCCCAGACTCTC	0.483													60	27					0	0	1	0	0
ENTPD3	956	broad.mit.edu	37	3	40457329	40457329	+	Splice_Site	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:40457329A>T	uc003ckd.3	+	7	690	c.598_splice	c.e7-2	p.K200_splice	ENTPD3_uc010hhy.2_Splice_Site_p.K200_splice|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase							integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		CCCACTGTGCAGAAGAACCTG	0.537													20	10					0	0	1	0	0
LYZL4	131375	broad.mit.edu	37	3	42445549	42445549	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:42445549C>T	uc003cle.2	-	4	609	c.360G>A	c.(358-360)GGG>GGA	p.G120G		NM_144634	NP_653235	Q96KX0	LYZL4_HUMAN	lysozyme-like 4 precursor	120					cell wall macromolecule catabolic process	extracellular region	lysozyme activity			central_nervous_system(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.222)		ATGCTCCCATCCCTTCTTTTC	0.378													12	24					0	0	1	0	0
ZNF197	10168	broad.mit.edu	37	3	44685638	44685638	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:44685638A>G	uc003cnm.2	+	6	3222	c.3016A>G	c.(3016-3018)AAA>GAA	p.K1006E	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	1006					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		TCTTCAACAGAAAATCCATAC	0.358													22	7					0	0	1	0	0
KIF15	56992	broad.mit.edu	37	3	44842958	44842958	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:44842958C>G	uc003cnx.3	+	12	1388	c.1239C>G	c.(1237-1239)AAC>AAG	p.N413K	KIF15_uc010hiq.2_Missense_Mutation_p.N316K|KIF15_uc003cny.1_Missense_Mutation_p.N48K	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	413	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AGAAGACTAACTATATGGAGT	0.303													15	67					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45153916	45153916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:45153916G>A	uc003com.2	-	3	449	c.314C>T	c.(313-315)CCT>CTT	p.P105L	CDCP1_uc003con.2_Missense_Mutation_p.P105L	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	105	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CTCCCCAAAAGGACATGGGCC	0.507													117	77					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46495814	46495814	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:46495814G>A	uc003cpq.2	-	6	722	c.684C>T	c.(682-684)ATC>ATT	p.I228I	LTF_uc003fzr.2_Silent_p.I184I|LTF_uc010hjh.2_Silent_p.I228I|LTF_uc003cpr.2_Silent_p.I215I	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	228	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TGCTCTCTCTGATAAAAGCCA	0.493													44	159					0	0	1	0	0
RTP3	83597	broad.mit.edu	37	3	46542359	46542359	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:46542359C>T	uc003cps.1	+	2	737	c.669C>T	c.(667-669)ATC>ATT	p.I223I		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	223	Helical; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TCATTGTTATCGTGGTGATTG	0.269													32	11					0	0	1	0	0
LRRC2	79442	broad.mit.edu	37	3	46574278	46574278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:46574278C>T	uc010hji.2	-	5	976	c.612G>A	c.(610-612)ATG>ATA	p.M204I	LRRC2_uc003cpu.3_Missense_Mutation_p.M204I	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	204	LRR 4.									ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		AGGGCAGCTCCATTAATTCTA	0.348													12	58					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46713055	46713055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:46713055C>T	uc003cqa.1	-	25	2894	c.2704G>A	c.(2704-2706)GAG>AAG	p.E902K	ALS2CL_uc003cpx.1_Missense_Mutation_p.E249K|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Missense_Mutation_p.E417K|ALS2CL_uc003cqb.1_Missense_Mutation_p.E902K|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	902	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		AGGTGGATCTCGGCTCCCAGG	0.537													11	48					0	0	1	0	0
PRSS42	339906	broad.mit.edu	37	3	46871983	46871983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:46871983C>T	uc011bap.1	-	5	793	c.793G>A	c.(793-795)GGA>AGA	p.G265R	PRSS42_uc003cqj.2_Missense_Mutation_p.G92E	NM_182702	NP_874361	Q7Z5A4	PRS42_HUMAN	testis serine protease 2 precursor	265	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			pancreas(1)	1						CCAGAATCTCCCTAGAGAAAG	0.502													4	9					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47030212	47030212	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47030212G>A	uc003cqp.2	+	2	284	c.105G>A	c.(103-105)AAG>AAA	p.K35K	NBEAL2_uc003cqq.1_Silent_p.K28K	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	35							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GTGCCTTCAAGAAGAGCATCT	0.597													38	92					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47030424	47030424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47030424C>T	uc003cqp.2	+	3	412	c.233C>T	c.(232-234)GCC>GTC	p.A78V	NBEAL2_uc003cqq.1_Missense_Mutation_p.A71V	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	78							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CTGGAGCAAGCCCTCCTGCTG	0.602													15	29					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47162137	47162137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47162137G>A	uc003cqs.2	-	3	4042	c.3989C>T	c.(3988-3990)TCC>TTC	p.S1330F	SETD2_uc003cqv.2_Missense_Mutation_p.S1319F	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1330					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		ATCTGTTAGGGAATCTGGTAC	0.453			N|F|S|Mis		clear cell renal carcinoma								19	55					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47162162	47162162	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47162162G>A	uc003cqs.2	-	3	4017	c.3964C>T	c.(3964-3966)CGA>TGA	p.R1322*	SETD2_uc003cqv.2_Nonsense_Mutation_p.R1311*	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CCTTGAGTTCGATCATACACA	0.463			N|F|S|Mis		clear cell renal carcinoma								37	21					0	0	1	0	0
DHX30	22907	broad.mit.edu	37	3	47887899	47887900	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47887899_47887900CC>TT	uc003cru.2	+	11	1763_1764	c.1337_1338CC>TT	c.(1336-1338)GCC>GTT	p.A446V	DHX30_uc003crt.2_Missense_Mutation_p.A407V	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	446	Helicase ATP-binding.					mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		ATCCTCAACGCCATTGAGCAGC	0.663													38	56					0	0	1	0	0
MAP4	4134	broad.mit.edu	37	3	47969824	47969824	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:47969824G>A	uc003csb.2	-	4	835	c.309C>T	c.(307-309)TTC>TTT	p.F103F	MAP4_uc003csc.3_Silent_p.F103F|MAP4_uc011bbf.1_Silent_p.F80F|MAP4_uc003csf.3_Silent_p.F120F	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	103					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TCTCTTCAAGGAATTCAGTTG	0.398													38	25					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48422237	48422237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:48422237C>T	uc003csr.2	+	8	1006	c.820C>T	c.(820-822)CCT>TCT	p.P274S	FBXW12_uc010hjv.2_Missense_Mutation_p.P255S|FBXW12_uc003css.2_Missense_Mutation_p.P204S|FBXW12_uc010hjw.2_Missense_Mutation_p.P173S	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	274											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGCAGTGTTCCTCTGTCTAC	0.483													13	82					0	0	1	0	0
ATRIP	84126	broad.mit.edu	37	3	48501565	48501565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:48501565C>T	uc003ctf.1	+	8	1144	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	ATRIP_uc011bbj.1_Missense_Mutation_p.S244F|ATRIP_uc003ctg.1_Missense_Mutation_p.S371F|TREX1_uc010hjy.2_5'UTR	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	371					DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGTCATTTTCCCTCTCAGCC	0.512								Other_conserved_DNA_damage_response_genes					47	25					0	0	1	0	0
PFKFB4	5210	broad.mit.edu	37	3	48561233	48561233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:48561233G>A	uc003ctv.2	-	11	1140	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	PFKFB4_uc003ctw.2_Missense_Mutation_p.P184S|PFKFB4_uc010hkc.2_Missense_Mutation_p.P340S|PFKFB4_uc003ctx.2_Missense_Mutation_p.P332S|PFKFB4_uc010hkb.2_Missense_Mutation_p.P368S|PFKFB4_uc011bbm.1_Missense_Mutation_p.P364S	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	375	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		ATGATGACAGGCTCCAGTCTC	0.617													16	60					0	0	1	0	0
APEH	327	broad.mit.edu	37	3	49720298	49720298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:49720298C>T	uc003cxf.2	+	20	2306	c.1906C>T	c.(1906-1908)CCT>TCT	p.P636S	APEH_uc010hkw.1_Missense_Mutation_p.P641S	NM_001640	NP_001631	P13798	ACPH_HUMAN	N-acylaminoacyl-peptide hydrolase	636					proteolysis	cytoplasm|nuclear membrane	serine-type endopeptidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GGCTGGCTTTCCTTTCAGCAG	0.587													16	34					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49736478	49736478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:49736478C>T	uc003cxh.2	+	10	790	c.704C>T	c.(703-705)CCA>CTA	p.P235L	RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	235	B30.2/SPRY.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GCCTACTTCCCAGCCATCAGC	0.562													36	64					0	0	1	0	0
MST1R	4486	broad.mit.edu	37	3	49928020	49928020	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:49928020C>T	uc003cxy.3	-	18	3972	c.3708G>A	c.(3706-3708)AGG>AGA	p.R1236R	MST1R_uc011bdc.1_Silent_p.R115R	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	1236	Cytoplasmic (Potential).|Protein kinase.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		TATAGTACTCCCTGTCCAGGA	0.547													8	26					0	0	1	0	0
RASSF1	11186	broad.mit.edu	37	3	50369288	50369288	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:50369288C>T	uc003dad.1	-	4	606	c.475_splice	c.e4-1	p.N159_splice	RASSF1_uc003daa.1_Splice_Site_p.N4_splice|RASSF1_uc003dab.1_Splice_Site_p.N85_splice|RASSF1_uc003dac.2_Splice_Site_p.N4_splice|RASSF1_uc003dae.1_Splice_Site_p.N155_splice|RASSF1_uc010hlk.1_Splice_Site|RASSF1_uc003daf.1_Splice_Site_p.N4_splice	NM_170714	NP_733832	Q9NS23	RASF1_HUMAN	Ras association domain family 1 isoform D						cell cycle arrest|negative regulation of cell cycle arrest|positive regulation of protein ubiquitination|protein stabilization|Ras protein signal transduction|response to DNA damage stimulus	microtubule|microtubule cytoskeleton|microtubule organizing center|nucleus|spindle pole	identical protein binding|protein binding|protein N-terminus binding|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000278)|OV - Ovarian serous cystadenocarcinoma(275;0.0015)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CGTCCTTGTTCTAAAGAAATA	0.507													14	28					0	0	1	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50683618	50683618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:50683618C>T	uc003day.1	+	10	1348	c.752C>T	c.(751-753)TCC>TTC	p.S251F	MAPKAPK3_uc003daz.1_Missense_Mutation_p.S251F|MAPKAPK3_uc003dba.1_Missense_Mutation_p.S251F|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.S251F	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	251	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		CAGGCCATCTCCCCGGGGATG	0.597													49	133					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51352496	51352496	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:51352496C>T	uc011bds.1	+	32	3362	c.3339C>T	c.(3337-3339)ATC>ATT	p.I1113I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1113						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TACGGAATATCATGATTCCCA	0.448													24	13					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51413195	51413195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:51413195G>A	uc011bds.1	+	51	5452	c.5429G>A	c.(5428-5430)CGA>CAA	p.R1810Q		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1810						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AATTTCCAGCGAGCCCTGTTC	0.527													26	75					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51749974	51749974	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:51749974T>C	uc010hlv.2	+	4	2424	c.2185T>C	c.(2185-2187)TTG>CTG	p.L729L	GRM2_uc003dbo.3_Silent_p.L111L|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	729	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	TGCAAGTATGTTGGGCTCGCT	0.612													15	48					0	0	1	0	0
PARP3	10039	broad.mit.edu	37	3	51979198	51979198	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:51979198C>T	uc003dby.2	+	6	1190	c.819C>T	c.(817-819)ATC>ATT	p.I273I	PARP3_uc003dbz.2_Silent_p.I280I	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	273	PARP alpha-helical.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CCCCGCCCATCAATTCCCCTG	0.627													32	51					0	0	1	0	0
WDR82	80335	broad.mit.edu	37	3	52293735	52293735	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52293735C>A	uc003ddl.2	-	6	979	c.697G>T	c.(697-699)GGG>TGG	p.G233W	WDR82_uc003ddk.2_Missense_Mutation_p.G158W	NM_025222	NP_079498	Q6UXN9	WDR82_HUMAN	WD repeat domain 82	233					histone H3-K4 methylation	chromatin|PTW/PP1 phosphatase complex|Set1C/COMPASS complex	protein binding				0				BRCA - Breast invasive adenocarcinoma(193;2.67e-05)|Kidney(197;0.00198)|KIRC - Kidney renal clear cell carcinoma(197;0.00223)|OV - Ovarian serous cystadenocarcinoma(275;0.246)		CAGCTCACCCCAAATGTGTGC	0.448													5	237					0.217242	0.217242	1	1	0
GLYCTK	132158	broad.mit.edu	37	3	52327106	52327106	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52327106C>T	uc003ddo.2	+	5	1632	c.1536C>T	c.(1534-1536)GTC>GTT	p.V512V	GLYCTK_uc003ddm.2_RNA|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Missense_Mutation_p.H354Y|GLYCTK_uc003ddr.2_Silent_p.V176V	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	512					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		GTACCAATGTCATGGACACCC	0.557													6	35					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52425239	52425239	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52425239C>T	uc011bef.1	+	62	10047	c.9786C>T	c.(9784-9786)GAC>GAT	p.D3262D	DNAH1_uc003ddv.2_Silent_p.D120D	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3327	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTGACCGCGACTTCCTGCGCA	0.592													6	18					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52430761	52430761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52430761G>A	uc011bef.1	+	72	11819	c.11558G>A	c.(11557-11559)TGC>TAC	p.C3853Y	DNAH1_uc003ddv.2_Missense_Mutation_p.C711Y	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3918	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGCGCATCTGCATCAGCCAG	0.582													41	140					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52470034	52470034	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52470034A>G	uc003dea.1	-	16	1934	c.1934T>C	c.(1933-1935)CTT>CCT	p.L645P		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	645	Ig-like C2-type.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GAAACGGCTAAGCCTGCGGAA	0.642													31	20					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475896	52475896	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52475896C>T	uc003dea.1	-	5	489	c.489G>A	c.(487-489)GTG>GTA	p.V163V		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	163	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GGCCACTTTCCACACTGCCAG	0.577													4	4					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52812994	52812994	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52812994G>A	uc003dfs.2	+	4	366	c.342G>A	c.(340-342)AAG>AAA	p.K114K	ITIH1_uc010hmn.1_RNA	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	114	VIT.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GAGACATAAAGGACAAGGTGA	0.542													17	50					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52817048	52817048	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52817048C>T	uc003dfs.2	+	9	1030	c.1006C>T	c.(1006-1008)CGA>TGA	p.R336*	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	336	VWFA.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TTTTGGGACTCGAGTACAATC	0.532													58	31					0	0	1	0	0
ITIH3	3699	broad.mit.edu	37	3	52842610	52842610	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52842610G>A	uc003dfv.2	+	22	2622	c.2586G>A	c.(2584-2586)ACG>ACA	p.T862T	ITIH3_uc011bek.1_Silent_p.T670T	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	862					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GCATCGGCACGAAGGTTGTCT	0.527													14	27					0	0	1	0	0
RFT1	91869	broad.mit.edu	37	3	53159945	53159945	+	Silent	SNP	G	A	A	rs148510042		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:53159945G>A	uc003dgj.2	-	2	183	c.129C>T	c.(127-129)ATC>ATT	p.I43I	RFT1_uc003dgk.2_Silent_p.I43I	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	43	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity	p.I43I(1)		skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		CTACGCCAACGATTTCCTTTG	0.408													17	20					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53844083	53844083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:53844083C>T	uc003dgv.3	+	47	6113	c.5950C>T	c.(5950-5952)CCT>TCT	p.P1984S	CACNA1D_uc003dgu.3_Missense_Mutation_p.P2004S|CACNA1D_uc003dgy.3_Missense_Mutation_p.P1960S|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1651S|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1984	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GTGGGCCACCCCTCCAGCAAC	0.617													15	52					0	0	1	0	0
CHDH	55349	broad.mit.edu	37	3	53853678	53853678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:53853678C>T	uc003dgz.2	-	7	1584	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	382					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CCACCTGTTTCCAGATGGGCA	0.642													4	22					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537588	54537588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:54537588G>A	uc003dhf.2	+	5	499	c.451G>A	c.(451-453)GAA>AAA	p.E151K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E57K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	151	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCTGGGAAAGGAATTCATCTT	0.373													47	28					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604108	54604108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:54604108G>A	uc003dhf.2	+	8	913	c.865G>A	c.(865-867)GAT>AAT	p.D289N	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.D195N|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.D23N	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	289	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACTTGGGGATGATGACTTCTT	0.443													64	103					0	0	1	0	0
WNT5A	7474	broad.mit.edu	37	3	55504257	55504257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:55504257C>T	uc003dhn.2	-	5	1324	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	WNT5A_uc003dhm.2_Missense_Mutation_p.E321K|WNT5A_uc010hmw.2_Missense_Mutation_p.E321K|WNT5A_uc010hmx.2_Missense_Mutation_p.E247K	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	336					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CACATGAGCTCGCAGCCATCC	0.637													27	54					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56330287	56330287	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:56330287G>A	uc003dhr.1	-	3	1090	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	278	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCCTCAAAAGGAACAGCTCCT	0.493													185	102					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468694	56468694	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:56468694G>A	uc003dhr.1	-	2	598	c.342C>T	c.(340-342)GTC>GTT	p.V114V		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	114						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TGTATGAAAGGACATCTGTGT	0.522													33	107					0	0	1	0	0
SLMAP	7871	broad.mit.edu	37	3	57847687	57847687	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:57847687T>G	uc003dje.1	+	9	1045	c.840T>G	c.(838-840)AGT>AGG	p.S280R	SLMAP_uc003djc.1_Missense_Mutation_p.S280R|SLMAP_uc003djd.1_Missense_Mutation_p.S280R|SLMAP_uc003djf.1_Missense_Mutation_p.S280R|SLMAP_uc003djg.1_5'Flank	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	280	Potential.|Cytoplasmic (Potential).				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		GAAGTCTGAGTAATACTGAAG	0.294													15	69					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58109198	58109198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:58109198G>A	uc003djj.2	+	21	3670	c.3505G>A	c.(3505-3507)GAA>AAA	p.E1169K	FLNB_uc010hne.2_Missense_Mutation_p.E1169K|FLNB_uc003djk.2_Missense_Mutation_p.E1169K|FLNB_uc010hnf.2_Missense_Mutation_p.E1169K|FLNB_uc003djl.2_Missense_Mutation_p.E1000K|FLNB_uc003djm.2_Missense_Mutation_p.E1000K	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1169	Interaction with FBLP1.|Filamin 10.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCTGGGCCTGGAAGCTGTCTC	0.627													40	60					0	0	1	0	0
ACOX2	8309	broad.mit.edu	37	3	58510269	58510269	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:58510269G>A	uc003dkl.2	-	11	1585	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	470					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CAGATGGAGAGAGAGATCTCT	0.627													46	28					0	0	1	0	0
C3orf14	57415	broad.mit.edu	37	3	62319002	62319002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:62319002C>T	uc003dlf.2	+	6	469	c.325C>T	c.(325-327)CCT>TCT	p.P109S	C3orf14_uc010hnq.2_Missense_Mutation_p.P109S|C3orf14_uc003dlg.2_Missense_Mutation_p.P109S	NM_020685	NP_065736	Q9HBI5	CC014_HUMAN	hypothetical protein LOC57415	109										central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.00023)|KIRC - Kidney renal clear cell carcinoma(15;0.00877)|Kidney(15;0.0101)		AGCACCATATCCTTTTGCTGT	0.333													29	12					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62385095	62385095	+	Missense_Mutation	SNP	C	T	T	rs147103435		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:62385095C>T	uc003dll.2	-	30	4408	c.4048G>A	c.(4048-4050)GAA>AAA	p.E1350K	CADPS_uc003dlj.1_Missense_Mutation_p.E305K|CADPS_uc003dlk.1_Missense_Mutation_p.E798K|CADPS_uc003dlm.2_Missense_Mutation_p.E1311K|CADPS_uc003dln.2_Missense_Mutation_p.E1271K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1350	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TCGTCTTCTTCGTCTTCCTCA	0.498													19	72					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62459937	62459937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:62459937C>T	uc003dll.2	-	24	3748	c.3388G>A	c.(3388-3390)GTC>ATC	p.V1130I	CADPS_uc003dlj.1_Missense_Mutation_p.V80I|CADPS_uc003dlk.1_Missense_Mutation_p.V578I|CADPS_uc003dlm.2_Missense_Mutation_p.V1091I|CADPS_uc003dln.2_Missense_Mutation_p.V1051I	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1130					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GACTGTGGGACTCGAAAATCT	0.373													31	51					0	0	1	0	0
SYNPR	132204	broad.mit.edu	37	3	63542241	63542241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:63542241G>A	uc003dlq.2	+	3	541	c.172G>A	c.(172-174)GTG>ATG	p.V58M	SYNPR_uc003dlp.2_Missense_Mutation_p.V78M|SYNPR_uc011bfk.1_RNA|SYNPR_uc011bfl.1_Intron|SYNPR_uc010hnt.2_Missense_Mutation_p.V67M|SYNPR_uc011bfm.1_Intron	NM_144642	NP_653243	Q8TBG9	SYNPR_HUMAN	synaptoporin isoform 2	58	MARVEL.|Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	transporter activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000918)|KIRC - Kidney renal clear cell carcinoma(15;0.0658)|Kidney(15;0.0904)		GACGTTTGAGGTGCCCACCTG	0.463													9	12					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64601751	64601751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:64601751C>T	uc003dmg.2	-	20	2941	c.2909G>A	c.(2908-2910)GGG>GAG	p.G970E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G942E|ADAMTS9_uc003dmh.1_Missense_Mutation_p.G799E|ADAMTS9_uc003dmk.1_Missense_Mutation_p.G970E|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	970	TSP type-1 3.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CTCAGTCTTCCCATCCAGCCT	0.512													182	368					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64619401	64619401	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:64619401C>A	uc003dmg.2	-	13	2043	c.2011G>T	c.(2011-2013)GTG>TTG	p.V671L	ADAMTS9_uc011bfo.1_Missense_Mutation_p.V643L|ADAMTS9_uc003dmh.1_Missense_Mutation_p.V500L|ADAMTS9_uc003dmk.1_Missense_Mutation_p.V671L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	671	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		ACCCAGCGCACATTGGGAAGC	0.512													321	177					1.31532e-140	1.33601e-140	1	1	0
LRIG1	26018	broad.mit.edu	37	3	66430726	66430726	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:66430726C>T	uc003dmx.2	-	19	3257	c.3243G>A	c.(3241-3243)GGG>GGA	p.G1081G	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_Silent_p.G701G|LRIG1_uc003dmw.2_Silent_p.G747G|LRIG1_uc010hnz.2_Silent_p.G797G|LRIG1_uc010hoa.2_Silent_p.G1058G	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	1081	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CCCTCTGTTTCCCGGGGAGCT	0.557													43	9					0	0	1	0	0
LRIG1	26018	broad.mit.edu	37	3	66431055	66431055	+	Missense_Mutation	SNP	C	T	T	rs146580942	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:66431055C>T	uc003dmx.2	-	18	3015	c.3001G>A	c.(3001-3003)GAT>AAT	p.D1001N	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_Missense_Mutation_p.D621N|LRIG1_uc003dmw.2_Missense_Mutation_p.D667N|LRIG1_uc010hnz.2_Missense_Mutation_p.D717N|LRIG1_uc010hoa.2_Missense_Mutation_p.D978N	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	1001	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		AGCATTCTATCGTGGTTACTG	0.537													51	148					0	0	1	0	0
FAM19A1	407738	broad.mit.edu	37	3	68055862	68055862	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:68055862C>T	uc003dnd.2	+	2	309	c.93C>T	c.(91-93)TTC>TTT	p.F31F	FAM19A1_uc003dne.2_Silent_p.F31F|FAM19A1_uc003dng.2_Silent_p.F31F|FAM19A1_uc003dnf.1_RNA	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	31						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		AGCACACTTTCCAGCAGCATC	0.498													25	91					0	0	1	0	0
FAM19A1	407738	broad.mit.edu	37	3	68466432	68466432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:68466432G>A	uc003dnd.2	+	3	337	c.121G>A	c.(121-123)GGA>AGA	p.G41R	FAM19A1_uc003dne.2_Missense_Mutation_p.G41R|FAM19A1_uc003dng.2_Missense_Mutation_p.G41R	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	41						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		CTTGCCAGAAGGAGGGACGTG	0.468													31	11					0	0	1	0	0
TMF1	7110	broad.mit.edu	37	3	69079079	69079079	+	Silent	SNP	C	T	T	rs61737463		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:69079079C>T	uc003dnn.2	-	11	2728	c.2481G>A	c.(2479-2481)CAG>CAA	p.Q827Q	TMF1_uc011bfx.1_Silent_p.Q830Q	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	827	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		TGGAAGACATCTGAATTTTGT	0.428													38	76					0	0	1	0	0
UBA3	9039	broad.mit.edu	37	3	69112140	69112140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:69112140G>A	uc003dno.2	-	9	706	c.686C>T	c.(685-687)CCA>CTA	p.P229L	UBA3_uc003dnq.2_Missense_Mutation_p.P215L|UBA3_uc011bfy.1_Missense_Mutation_p.P52L|UBA3_uc011bfz.1_Missense_Mutation_p.P52L	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	229	Interaction with NEDD8.				protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		TACCTGTGGTGGATAAAGTTC	0.388													20	54					0	0	1	0	0
FOXP1	27086	broad.mit.edu	37	3	71021714	71021714	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:71021714C>T	uc003dol.2	-	14	1967	c.1644G>A	c.(1642-1644)AAG>AAA	p.K548K	FOXP1_uc003dom.2_Silent_p.K472K|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.K547K|FOXP1_uc003dop.2_Silent_p.K548K|FOXP1_uc003doq.1_Intron|FOXP1_uc003doi.2_Silent_p.K448K|FOXP1_uc003doj.2_Silent_p.K448K|FOXP1_uc003dok.2_Silent_p.K361K|FOXP1_uc003dor.1_Silent_p.K325K	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	548	Fork-head.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		ACCCACTGATCTTTTGTGGCC	0.423			T	PAX5	ALL								26	76					0	0	1	0	0
GBE1	2632	broad.mit.edu	37	3	81548268	81548268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:81548268G>A	uc003dqg.2	-	16	2328	c.2045C>T	c.(2044-2046)TCT>TTT	p.S682F		NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	682					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		TACCAAAAGAGAATAGGGACG	0.358									Glycogen_Storage_Disease_type_IV				4	6					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	85932477	85932477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:85932477C>T	uc003dqj.2	+	3	874	c.248C>T	c.(247-249)TCC>TTC	p.S83F	CADM2_uc003dqk.2_Missense_Mutation_p.S92F|CADM2_uc003dql.2_Missense_Mutation_p.S85F	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	83	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GTTCGCGCTTCCTGGCATGAA	0.388													11	20					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	85961590	85961590	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:85961590C>T	uc003dqj.2	+	5	1196	c.570C>T	c.(568-570)TTC>TTT	p.F190F	CADM2_uc003dqk.2_Silent_p.F199F|CADM2_uc003dql.2_Silent_p.F192F	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	190	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CACTGGACTTCCGAGTGGACC	0.433													18	11					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86010691	86010691	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:86010691G>A	uc003dqj.2	+	7	1463	c.837G>A	c.(835-837)AGG>AGA	p.R279R	CADM2_uc003dqk.2_Silent_p.R288R|CADM2_uc003dql.2_Silent_p.R281R	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	279	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TGAGTGGTAGGGAGCTAAACA	0.433													15	57					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86028341	86028341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:86028341C>T	uc003dqj.2	+	8	1597	c.971C>T	c.(970-972)ACT>ATT	p.T324I	CADM2_uc003dqk.2_Intron|CADM2_uc003dql.2_Missense_Mutation_p.T326I	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	324	Thr-rich.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CTTCCCACTACTATCATCCCC	0.408													37	118					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86114794	86114794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:86114794C>T	uc003dqj.2	+	9	1729	c.1103C>T	c.(1102-1104)GCT>GTT	p.A368V	CADM2_uc003dqk.2_Missense_Mutation_p.A337V|CADM2_uc003dql.2_Missense_Mutation_p.A370V	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	368	Helical; (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CCTGACCATGCTCTCATAGGA	0.393													11	37					0	0	1	0	0
VGLL3	389136	broad.mit.edu	37	3	87027862	87027862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:87027862C>T	uc003dqn.2	-	2	581	c.217G>A	c.(217-219)GAG>AAG	p.E73K		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	73					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		tctttctcctcctcctcctcc	0.398													15	17					0	0	1	0	0
PROS1	5627	broad.mit.edu	37	3	93598108	93598108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:93598108G>A	uc003drb.3	-	13	1884	c.1543C>T	c.(1543-1545)CGT>TGT	p.R515C	PROS1_uc010hoo.2_Missense_Mutation_p.R384C|PROS1_uc003dqz.3_Missense_Mutation_p.R384C	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	515	Laminin G-like 2.		R -> P (in PROS1D).|R -> C (in PROS1D; secretion of the mutant markedly decreased compared with that of the wild-type; intracellular degradation and impaired secretion of the mutant).	R->K: No change in secretion of the mutant.|R->A,E: Markedly reduced secretion of the mutant.	leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	GTGGATGGACGAATATTCAAG	0.433													31	78					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96945167	96945167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:96945167C>T	uc010how.1	+	4	1217	c.1174C>T	c.(1174-1176)CCA>TCA	p.P392S	EPHA6_uc003drp.1_Missense_Mutation_p.P392S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	297	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TAAATGTCCTCCACACAGTTT	0.373													60	31					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96963065	96963065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:96963065G>A	uc010how.1	+	5	1583	c.1540G>A	c.(1540-1542)GGA>AGA	p.G514R	EPHA6_uc003drp.1_Missense_Mutation_p.G514R	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	419	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGCAATGAATGGAGTTTCTGA	0.433													27	66					0	0	1	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806208	97806208	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:97806208C>T	uc011bgs.1	+	1	192	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTACTTATTCCTTGGTGGTT	0.433													46	136					0	0	1	0	0
OR5H1	26341	broad.mit.edu	37	3	97852246	97852246	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:97852246G>A	uc011bgt.1	+	1	705	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AAGGTGTAAGGAAAGCCTTTT	0.408													22	72					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983880	97983880	+	Missense_Mutation	SNP	G	A	A	rs145676438	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:97983880G>A	uc003dsi.1	+	1	752	c.752G>A	c.(751-753)CGA>CAA	p.R251Q		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	251	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						AAAGGGATACGAAAAGCTGTC	0.398													12	29					0	0	1	0	0
OR5K4	403278	broad.mit.edu	37	3	98072718	98072718	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:98072718C>T	uc011bgv.1	+	1	21	c.21C>T	c.(19-21)TCC>TCT	p.S7S		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAAATCACTCCTTAGCAGCTG	0.408													19	31					0	0	1	0	0
OR5K2	402135	broad.mit.edu	37	3	98217005	98217005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:98217005G>A	uc011bgx.1	+	1	481	c.481G>A	c.(481-483)GGG>AGG	p.G161R		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GATTCATGTAGGGCTTGTATT	0.428													30	98					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513594	99513594	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:99513594G>A	uc003dtg.1	+	5	1094	c.849G>A	c.(847-849)CAG>CAA	p.Q283Q	COL8A1_uc003dth.1_Silent_p.Q283Q|COL8A1_uc003dti.1_Silent_p.Q284Q	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	283	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						CTGGGCCCCAGGGCCCCCTGG	0.662													15	29					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101044921	101044921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101044921G>A	uc003dut.2	-	24	3130	c.3019C>T	c.(3019-3021)CCT>TCT	p.P1007S	SENP7_uc003duu.2_Missense_Mutation_p.P942S|SENP7_uc003duv.2_Missense_Mutation_p.P974S|SENP7_uc003duw.2_Missense_Mutation_p.P941S|SENP7_uc003dux.2_Missense_Mutation_p.P843S|SENP7_uc003dus.2_Missense_Mutation_p.P195S	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	1007	Protease.				proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						TTAACAATAGGATCCTAATGA	0.308													12	5					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101044924	101044924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101044924C>T	uc003dut.2	-	24	3127	c.3016G>A	c.(3016-3018)GAT>AAT	p.D1006N	SENP7_uc003duu.2_Missense_Mutation_p.D941N|SENP7_uc003duv.2_Missense_Mutation_p.D973N|SENP7_uc003duw.2_Missense_Mutation_p.D940N|SENP7_uc003dux.2_Missense_Mutation_p.D842N|SENP7_uc003dus.2_Missense_Mutation_p.D194N	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	1006	Protease.			D -> N (in Ref. 1; AAL25651).	proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						ACAATAGGATCCTAATGAGAG	0.303													7	10					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101062675	101062676	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101062675_101062676GG>AA	uc003dut.2	-	14	2071_2072	c.1960_1961CC>TT	c.(1960-1962)CCG>TTG	p.P654L	SENP7_uc003duu.2_Missense_Mutation_p.P589L|SENP7_uc003duv.2_Missense_Mutation_p.P621L|SENP7_uc003duw.2_Missense_Mutation_p.P588L|SENP7_uc003dux.2_Missense_Mutation_p.P490L	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	654					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						CCAAGACAACGGGTAAGAAAGC	0.356													8	31					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101219918	101219918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101219918G>A	uc003dut.2	-	2	197	c.86C>T	c.(85-87)TCG>TTG	p.S29L	SENP7_uc003duu.2_Missense_Mutation_p.S29L|SENP7_uc003duv.2_Intron|SENP7_uc003duw.2_Missense_Mutation_p.S29L|SENP7_uc003dux.2_Intron	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	29					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						GCATACCTCCGATAAATCAGA	0.279													14	28					0	0	1	0	0
RG9MTD1	54931	broad.mit.edu	37	3	101284528	101284528	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101284528C>T	uc003duz.2	+	2	1051	c.903C>T	c.(901-903)TTC>TTT	p.F301F		NM_017819	NP_060289	Q7L0Y3	MRRP1_HUMAN	RNA (guanine-9-) methyltransferase domain	301					tRNA processing	mitochondrion	methyltransferase activity|protein binding			ovary(1)	1						TGACTACTTTCAGGCATGACA	0.378													11	35					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101483990	101483990	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101483990C>T	uc003dvk.1	+	11	2220	c.2193C>T	c.(2191-2193)TCC>TCT	p.S731S	CEP97_uc011bhf.1_Silent_p.S672S|CEP97_uc003dvl.1_Silent_p.S453S|CEP97_uc003dvm.1_Silent_p.S569S	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	731	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						GTGAAAGCTCCATAATGGGGA	0.388													11	37					0	0	1	0	0
FAM55C	91775	broad.mit.edu	37	3	101540541	101540541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:101540541C>T	uc003dvn.2	+	8	2060	c.1423C>T	c.(1423-1425)CCA>TCA	p.P475S	FAM55C_uc010hpn.2_Missense_Mutation_p.P475S	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	475						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						CGATCGAAGCCCAAAGACCGT	0.567													27	71					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108117930	108117930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:108117930G>A	uc003dxa.1	-	35	5038	c.4981C>T	c.(4981-4983)CAA>TAA	p.Q1661*		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1661	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ACCTTGATTTGAATCTGAAGC	0.453													11	28					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108124234	108124234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:108124234C>T	uc003dxa.1	-	34	4804	c.4747G>A	c.(4747-4749)GAA>AAA	p.E1583K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1583	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTTTCAAGTTCTGCTTTAGCT	0.318													5	18					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108147647	108147647	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:108147647T>G	uc003dxa.1	-	28	3511	c.3454A>C	c.(3454-3456)ACC>CCC	p.T1152P		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1152	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGGTCTTGGGTGAGGTCAGCT	0.443													24	92					0	0	1	0	0
KIAA1524	57650	broad.mit.edu	37	3	108272529	108272529	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:108272529C>T	uc003dxb.3	-	19	2642	c.2373G>A	c.(2371-2373)CAG>CAA	p.Q791Q		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	791	Potential.					cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						CTAGCTGATTCTGTACTTCTT	0.284													5	14					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108474705	108474705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:108474705C>T	uc003dxh.2	-	3	354	c.256G>A	c.(256-258)GAT>AAT	p.D86N		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	86					cell proliferation	extracellular region	hormone activity			skin(1)	1						AGCTGAACATCCCACGAACCA	0.572													47	23					0	0	1	0	0
DPPA2	151871	broad.mit.edu	37	3	109027097	109027097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:109027097G>A	uc003dxo.2	-	6	687	c.440C>T	c.(439-441)TCG>TTG	p.S147L		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	147						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						GCGTTTCCTCGAACATCGCTG	0.428													12	39					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113299474	113299474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:113299474C>T	uc003eak.2	+	5	1232	c.581C>T	c.(580-582)CCC>CTC	p.P194L	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.P194L|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	194	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						TACAAGTTTCCCAAAGACGTG	0.338													21	69					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113303604	113303604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:113303604C>T	uc003eak.2	+	8	1546	c.895C>T	c.(895-897)CCT>TCT	p.P299S	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.P299S|SIDT1_uc011big.1_Missense_Mutation_p.P52S	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	299	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						GACCATTGTCCCTTCCATTAA	0.358													13	49					0	0	1	0	0
KIAA2018	205717	broad.mit.edu	37	3	113374804	113374804	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:113374804G>A	uc003eam.2	-	7	6136	c.5725C>T	c.(5725-5727)CGA>TGA	p.R1909*	KIAA2018_uc003eal.2_Nonsense_Mutation_p.R1853*	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1909					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CTTGTGTTTCGACCTTGAATA	0.448													14	38					0	0	1	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113619950	113619950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:113619950G>A	uc003eaq.3	+	7	689	c.613G>A	c.(613-615)GAG>AAG	p.E205K	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.E38K|GRAMD1C_uc003eas.2_5'UTR	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	205						integral to membrane				ovary(2)|skin(1)	3						AAATGCTGAGGAGATGGAAAA	0.393													18	44					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118866229	118866229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:118866229G>A	uc003ecb.1	+	1	1233	c.1193G>A	c.(1192-1194)AGC>AAC	p.S398N	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.S398N	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	398										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TTTGAGGATAGCCAAGTAGAC	0.463													18	43					0	0	1	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119121009	119121009	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:119121009C>T	uc003ecj.3	+	10	1942	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	470					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						CCAGCAGCCTCTTCCAGATGG	0.582													52	24					0	0	1	0	0
C3orf1	51300	broad.mit.edu	37	3	119236139	119236139	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:119236139C>T	uc003ecn.2	+	6	897	c.684C>T	c.(682-684)CTC>CTT	p.L228L	C3orf1_uc003eco.2_RNA|C3orf1_uc003ecp.2_RNA	NM_016589	NP_057673	Q9NPL8	TIDC1_HUMAN	hypothetical protein LOC51300	228						integral to membrane|mitochondrial inner membrane	protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.186)		GAAAGGCACTCCATGAGCTAA	0.468													27	64					0	0	1	0	0
NR1I2	8856	broad.mit.edu	37	3	119526231	119526231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:119526231G>A	uc003edj.2	+	2	1973	c.134G>A	c.(133-135)GGG>GAG	p.G45E	NR1I2_uc003edi.2_Missense_Mutation_p.G45E|NR1I2_uc003edk.2_Missense_Mutation_p.G84E	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	45	Nuclear receptor.|NR C4-type.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	CGTGTATGTGGGGACAAGGCC	0.522													20	79					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120760552	120760552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:120760552G>A	uc003eec.3	+	4	433	c.293G>A	c.(292-294)GGG>GAG	p.G98E	STXBP5L_uc011bji.1_Missense_Mutation_p.G98E	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	98	WD 1.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ATTAGACTCGGGAGACCTGGT	0.338													12	26					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126206	121126206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121126206G>A	uc003eec.3	+	24	2916	c.2776G>A	c.(2776-2778)GAA>AAA	p.E926K	STXBP5L_uc011bji.1_Missense_Mutation_p.E902K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	926	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGATGAAAATGAAAAATCTTG	0.398													14	35					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121354633	121354633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121354633C>T	uc003eeh.3	-	9	765	c.640G>A	c.(640-642)GAA>AAA	p.E214K	HCLS1_uc011bjj.1_Missense_Mutation_p.E177K|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	214					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		GCCTCCATTTCATTGAAGCCG	0.567													27	61					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121631883	121631883	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121631883C>T	uc003eep.2	+	5	597	c.444C>T	c.(442-444)ATC>ATT	p.I148I	SLC15A2_uc011bjn.1_Silent_p.I117I	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	148	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TATCATTGATCGGCCTGAGTC	0.448													124	218					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121712496	121712496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121712496C>T	uc003ees.2	-	7	1206	c.1100G>A	c.(1099-1101)GGG>GAG	p.G367E	ILDR1_uc003eeq.2_Missense_Mutation_p.G335E|ILDR1_uc003eer.2_Missense_Mutation_p.G323E|ILDR1_uc010hrg.2_Missense_Mutation_p.G278E	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	367	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GTGGCTTCTCCCCTCCCTCAG	0.592													23	29					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121725944	121725944	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121725944G>A	uc003ees.2	-	2	229	c.123C>T	c.(121-123)ATC>ATT	p.I41I	ILDR1_uc003eeq.2_Silent_p.I53I|ILDR1_uc003eer.2_Silent_p.I41I|ILDR1_uc010hrg.2_Silent_p.I41I	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	41	Extracellular (Potential).|Ig-like V-type.					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		ATTTGAGGATGATAGAGGCAA	0.522													16	51					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121994834	121994834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:121994834G>A	uc003eev.3	+	5	1925	c.1553G>A	c.(1552-1554)GGA>GAA	p.G518E	CASR_uc003eew.3_Missense_Mutation_p.G518E	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	518	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCCAAGAAGGGAGAAAGACTC	0.517													67	41					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122642521	122642521	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:122642521G>A	uc003efz.1	-	10	1519	c.1215C>T	c.(1213-1215)TAC>TAT	p.Y405Y	SEMA5B_uc011bju.1_Silent_p.Y347Y|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.Y405Y|SEMA5B_uc010hro.1_Silent_p.Y347Y|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	405	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GGTTCTCCTGGTAGCGAAATG	0.557													27	78					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124165034	124165034	+	Missense_Mutation	SNP	G	A	A	rs77832285		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124165034G>A	uc003ehg.2	+	20	3461	c.3334G>A	c.(3334-3336)GAG>AAG	p.E1112K	KALRN_uc010hrv.1_Missense_Mutation_p.E1103K|KALRN_uc003ehf.1_Missense_Mutation_p.E1112K|KALRN_uc011bjy.1_Missense_Mutation_p.E1103K|KALRN_uc003ehh.1_Missense_Mutation_p.E458K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1112					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCTGCAGAGGGAGAATCGCGT	0.567													10	35					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124209662	124209662	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124209662C>T	uc003ehg.2	+	30	4639	c.4512C>T	c.(4510-4512)TCC>TCT	p.S1504S	KALRN_uc010hrv.1_Silent_p.S1495S|KALRN_uc003ehf.1_Silent_p.S1504S|KALRN_uc011bjy.1_Silent_p.S1495S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1504	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTGAGATCTCCTTGGTTTTTA	0.507													24	61					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124413284	124413284	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124413284G>A	uc003ehg.2	+	53	7638	c.7511G>A	c.(7510-7512)TGG>TAG	p.W2504*	KALRN_uc003ehk.2_Nonsense_Mutation_p.W807*	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2503	Ig-like C2-type.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACCATCACTTGGAAGGGTCCA	0.537													21	84					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124437846	124437846	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124437846G>A	uc003ehg.2	+	60	8617	c.8490G>A	c.(8488-8490)CAG>CAA	p.Q2830Q	KALRN_uc003ehk.2_Silent_p.Q1133Q	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2829	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ATGCTGTCCAGATCTCGGGTC	0.552													36	21					0	0	1	0	0
MUC13	56667	broad.mit.edu	37	3	124642454	124642454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124642454G>A	uc003ehq.1	-	3	578	c.554C>T	c.(553-555)TCG>TTG	p.S185L		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	185	EGF-like 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						AACACATAACGAATTATCTGC	0.383													18	27					0	0	1	0	0
MUC13	56667	broad.mit.edu	37	3	124646631	124646631	+	Missense_Mutation	SNP	G	A	A	rs148320577		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:124646631G>A	uc003ehq.1	-	2	283	c.259C>T	c.(259-261)CCC>TCC	p.P87S		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	87	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						CTAATTATGGGGGGAGCAGGT	0.438													52	174					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125876293	125876293	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:125876293G>A	uc003eim.1	-	4	611	c.421C>T	c.(421-423)CTG>TTG	p.L141L	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Intron|ALDH1L1_uc003eio.2_5'Flank|ALDH1L1_uc010hsf.1_Silent_p.L167L|ALDH1L1_uc003eip.1_Silent_p.L50L|ALDH1L1_uc011bkj.1_5'UTR	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	141	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCGGTGTCCAGACCATCATCC	0.562													18	69					0	0	1	0	0
ABTB1	80325	broad.mit.edu	37	3	127396527	127396527	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:127396527C>T	uc003ejt.2	+	10	958	c.870C>T	c.(868-870)TTC>TTT	p.F290F	ABTB1_uc003ejr.2_Silent_p.F148F|ABTB1_uc003ejs.2_Silent_p.F265F|ABTB1_uc003eju.2_Silent_p.F148F|ABTB1_uc010hsm.2_Silent_p.F17F	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	290	BTB 2.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						AGGCCTTTTTCTGTGGCCGCA	0.682													3	6					0	0	1	0	0
RAB43	339122	broad.mit.edu	37	3	128852947	128852947	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:128852947C>T	uc003elo.1	-	9	844	c.633G>A	c.(631-633)GAG>GAA	p.E211E	ISY1_uc010hsz.1_Intron|ISY1_uc003elp.1_Silent_p.E211E|ISY1_uc010hta.1_Silent_p.E233E	NM_020701	NP_065752	Q86YS6	RAB43_HUMAN	ISY1 splicing factor homolog	Error:Variant_position_missing_in_Q86YS6_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						AGATGTTGATctcttcctcct	0.458													41	21					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129286603	129286603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:129286603C>T	uc003emx.2	-	21	4011	c.3911G>A	c.(3910-3912)TGG>TAG	p.W1304*	PLXND1_uc011blb.1_5'Flank	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1304	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CGTCTTCTGCCAGTAACGCTC	0.587													18	8					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131404723	131404723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:131404723G>A	uc003eok.2	-	6	1022	c.587C>T	c.(586-588)ACT>ATT	p.T196I	CPNE4_uc011blq.1_Missense_Mutation_p.T214I|CPNE4_uc003eol.2_Missense_Mutation_p.T214I|CPNE4_uc003eom.2_Missense_Mutation_p.T196I	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	196	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCTTACCTCAGTTCGGTGCAC	0.373													5	18					0	0	1	0	0
ACPP	55	broad.mit.edu	37	3	132047123	132047123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:132047123G>A	uc010htp.2	+	2	223	c.133G>A	c.(133-135)GGA>AGA	p.G45R	ACPP_uc003eon.3_Missense_Mutation_p.G45R|ACPP_uc003eop.3_Missense_Mutation_p.G45R	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	45						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						GTTTCGGCATGGAGACCGAAG	0.433													13	49					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132196696	132196696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:132196696G>A	uc003eor.2	+	23	2574	c.2509G>A	c.(2509-2511)GAG>AAG	p.E837K		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	837							heat shock protein binding			ovary(1)|breast(1)	2						ATTACTATTGGAGGAAGATGA	0.343													45	89					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132196698	132196698	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:132196698G>A	uc003eor.2	+	23	2576	c.2511G>A	c.(2509-2511)GAG>GAA	p.E837E		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	837							heat shock protein binding			ovary(1)|breast(1)	2						TACTATTGGAGGAAGATGAGA	0.343													44	88					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132207172	132207172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:132207172G>A	uc003eor.2	+	30	3363	c.3298G>A	c.(3298-3300)GAG>AAG	p.E1100K		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1100							heat shock protein binding			ovary(1)|breast(1)	2						TATCCTTGTTGAGAAGGTTGC	0.348													16	37					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133487006	133487006	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:133487006C>T	uc003epu.1	+	18	3348	c.1620C>T	c.(1618-1620)TTC>TTT	p.F540F	TF_uc011blt.1_Silent_p.F413F|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.F540F	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	540	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	CAGGCGCTTTCAGGTGAGTCT	0.423													31	10					0	0	1	0	0
RAB6B	51560	broad.mit.edu	37	3	133557034	133557034	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:133557034C>T	uc003epy.2	-	6	852	c.471G>A	c.(469-471)GCG>GCA	p.A157A	RAB6B_uc011blu.1_Silent_p.A144A	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	157					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						AGCCAGTCTTCGCACTGGTCT	0.478													32	122					0	0	1	0	0
C3orf36	80111	broad.mit.edu	37	3	133647335	133647335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:133647335G>A	uc003epz.1	-	1	1322	c.313C>T	c.(313-315)CCT>TCT	p.P105S		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	105										ovary(1)	1						GGTGAGCAAGGTGGGGGCCCC	0.682													20	4					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134898711	134898711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:134898711G>A	uc003eqt.2	+	10	1989	c.1769G>A	c.(1768-1770)GGG>GAG	p.G590E	EPHB1_uc003equ.2_Missense_Mutation_p.G151E	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	590	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GGCTCCCCAGGGATGAAGATC	0.483													52	118					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134911659	134911659	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:134911659C>T	uc003eqt.2	+	11	2344	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	EPHB1_uc003equ.2_Silent_p.F269F	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	708	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TGGATTCTTTCCTCAGGGTAA	0.507													12	20					0	0	1	0	0
PIK3CB	5291	broad.mit.edu	37	3	138461459	138461459	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:138461459A>G	uc011bmq.1	-	3	562	c.562T>C	c.(562-564)TTA>CTA	p.L188L		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	188	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TTATCTTCTAAGTTTTCAGGG	0.348													110	304					0	0	1	0	0
FOXL2	668	broad.mit.edu	37	3	138665125	138665125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:138665125C>T	uc003esw.2	-	1	858	c.440G>A	c.(439-441)CGC>CAC	p.R147H	uc003esv.1_5'Flank|C3orf72_uc003esx.1_5'Flank|C3orf72_uc011bmr.1_5'Flank	NM_023067	NP_075555	P58012	FOXL2_HUMAN	forkhead box L2	147	Fork-head.				convergent extension|DNA fragmentation involved in apoptotic nuclear change|embryonic eye morphogenesis|extraocular skeletal muscle development|female somatic sex determination|induction of apoptosis|menstruation|negative regulation of transcription, DNA-dependent|ovarian follicle development|pattern specification process|positive regulation of caspase activity|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	caspase regulator activity|DNA bending activity|double-stranded DNA binding|estrogen receptor binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin conjugating enzyme binding			ovary(266)|large_intestine(1)|skin(1)	268						CTTCATGCGGCGGCGGCGCCG	0.572			Mis		granulosa-cell tumour of the ovary		Blepharophimosis|ptosis and epicanthus inversus Types I|II; Premature ovarian failure type III						3	15					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738946	138738946	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:138738946G>A	uc003esy.1	-	1	823	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	186										breast(1)	1						GGTAGGGGATGAACATACTTC	0.637													12	65					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277670	140277670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:140277670C>T	uc003etn.2	+	12	2202	c.2012C>T	c.(2011-2013)ACC>ATC	p.T671I		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	671	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TTCGCCAAAACCGAAGCCCCC	0.522										HNSCC(16;0.037)			7	33					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277683	140277683	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:140277683G>A	uc003etn.2	+	12	2215	c.2025G>A	c.(2023-2025)GGG>GGA	p.G675G		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	675	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						AAGCCCCCGGGGACGTGAAAA	0.498										HNSCC(16;0.037)			25	8					0	0	1	0	0
RASA2	5922	broad.mit.edu	37	3	141304936	141304936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:141304936G>A	uc003etz.1	+	18	1822	c.1822G>A	c.(1822-1824)GAA>AAA	p.E608K	RASA2_uc010huq.1_Missense_Mutation_p.E608K|RASA2_uc003eua.1_Missense_Mutation_p.E608K|RASA2_uc011bnc.1_Missense_Mutation_p.E200K	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	608	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GCACCTGAAAGAAGGGTAATT	0.279													9	15					0	0	1	0	0
C3orf58	205428	broad.mit.edu	37	3	143704391	143704391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:143704391C>T	uc003evo.2	+	2	1199	c.664C>T	c.(664-666)CCG>TCG	p.P222S	C3orf58_uc011bnl.1_Missense_Mutation_p.P13S	NM_173552	NP_775823	Q8NDZ4	CC058_HUMAN	hypothetical protein LOC205428 isoform a	222						COPI vesicle coat|extracellular region				ovary(1)	1						GTAGAGTTTTCCGTCTGATGA	0.368													30	55					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147113783	147113783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:147113783C>T	uc003ewd.1	-	3	817	c.544G>A	c.(544-546)GGA>AGA	p.G182R	ZIC4_uc003ewc.1_Missense_Mutation_p.G112R|ZIC4_uc011bno.1_Missense_Mutation_p.G232R	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	182	C2H2-type 2; atypical.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAGGGCTTTCCCTGGCGCGGA	0.597													113	64					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147114146	147114146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:147114146C>T	uc003ewd.1	-	3	454	c.181G>A	c.(181-183)GGA>AGA	p.G61R	ZIC4_uc003ewc.1_5'UTR|ZIC4_uc011bno.1_Missense_Mutation_p.G111R	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	61						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CGCAGGAGTCCATTCAAAGGA	0.736													4	27					0	0	1	0	0
ZIC1	7545	broad.mit.edu	37	3	147130363	147130363	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:147130363C>G	uc003ewe.2	+	2	1760	c.1041C>G	c.(1039-1041)AGC>AGG	p.S347R		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	347	C2H2-type 4.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CTAACAGCAGCGACCGCAAGA	0.532													16	45					0	0	1	0	0
AGTR1	185	broad.mit.edu	37	3	148459760	148459760	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:148459760T>G	uc003ewg.2	+	4	1384	c.938T>G	c.(937-939)TTT>TGT	p.F313C	AGTR1_uc003ewh.2_Missense_Mutation_p.F313C|AGTR1_uc003ewi.2_Missense_Mutation_p.F313C|AGTR1_uc003ewj.2_Missense_Mutation_p.F313C|AGTR1_uc003ewk.2_Missense_Mutation_p.F313C	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	313	Cytoplasmic (Potential).			RYF -> KDI (in Ref. 6; BAA02968).	calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	AAAAGATATTTTCTCCAGCTT	0.388													10	17					0	0	1	0	0
TM4SF1	4071	broad.mit.edu	37	3	149095243	149095243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:149095243G>A	uc003exb.1	-	1	326	c.92C>T	c.(91-93)CCC>CTC	p.P31L	TM4SF1_uc003exc.1_5'Flank	NM_014220	NP_055035	P30408	T4S1_HUMAN	transmembrane 4 superfamily member 1	31	Extracellular (Probable).					integral to plasma membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TTCCCCATTGGGAAAGTAAAG	0.527													16	43					0	0	1	0	0
FAM194A	131831	broad.mit.edu	37	3	150421572	150421572	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:150421572C>T	uc003eyg.2	-	1	171	c.114G>A	c.(112-114)GAG>GAA	p.E38E	FAM194A_uc003eyh.2_Intron	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	38	Glu-rich.									skin(2)|ovary(1)	3						ccacctcttcctcctcctcct	0.209													3	19					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151165712	151165712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:151165712G>A	uc011bod.1	-	4	2057	c.2057C>T	c.(2056-2058)CCT>CTT	p.P686L		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	686					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATGAGCAATAGGATTGGACTC	0.463													17	45					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154147202	154147202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:154147202G>A	uc003faa.2	-	1	303	c.203C>T	c.(202-204)TCC>TTC	p.S68F		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	68	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CACAAGCATGGACACAACAGT	0.468													28	61					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155199680	155199680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:155199680G>A	uc011bok.1	-	23	4436	c.4159C>T	c.(4159-4161)CCT>TCT	p.P1387S	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.P1349S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1387					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGTTTTAAAGGAGAAGCAAGT	0.438													18	42					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155200747	155200747	+	Missense_Mutation	SNP	G	A	A	rs145911919		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:155200747G>A	uc011bok.1	-	23	3369	c.3092C>T	c.(3091-3093)GCT>GTT	p.A1031V	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.A993V	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1031					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTGGAGCAGAGCACTGGAGGA	0.453													25	54					0	0	1	0	0
TIPARP	25976	broad.mit.edu	37	3	156395752	156395752	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:156395752T>G	uc003fav.2	+	2	514	c.266T>G	c.(265-267)ATG>AGG	p.M89R	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Missense_Mutation_p.M89R	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	89							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CATGAACCTATGATGAAGAAA	0.408													59	35					0	0	1	0	0
CCNL1	57018	broad.mit.edu	37	3	156866176	156866176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:156866176G>A	uc003fbf.2	-	11	2034	c.1435C>T	c.(1435-1437)CGG>TGG	p.R479W	CCNL1_uc003fbd.1_Intron|CCNL1_uc003fbe.2_Missense_Mutation_p.R273W|CCNL1_uc003fbg.2_RNA|CCNL1_uc011bor.1_RNA	NM_020307	NP_064703	Q9UK58	CCNL1_HUMAN	cyclin L1	479					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			lung(3)|breast(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(72;0.0295)|Lung(72;0.0308)			GAGTGATCCCGAGACTTGCTC	0.453													27	89					0	0	1	0	0
OTOL1	131149	broad.mit.edu	37	3	161214886	161214886	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:161214886C>T	uc011bpb.1	+	1	291	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	97						collagen					0						CAGCTGATTTCTTTTTGAATT	0.443													89	40					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164714397	164714397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:164714397G>A	uc003fei.2	-	40	4680	c.4618C>T	c.(4618-4620)CAT>TAT	p.H1540Y		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1540	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTACAGAGATGATATTCTGAG	0.299										HNSCC(35;0.089)			23	15					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164767591	164767591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:164767591G>A	uc003fei.2	-	14	1647	c.1585C>T	c.(1585-1587)CCG>TCG	p.P529S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	529	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGAGTAAACGGTGGATAATTC	0.274										HNSCC(35;0.089)			10	41					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167035383	167035383	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:167035383G>T	uc003fep.2	-	13	1309	c.986C>A	c.(985-987)ACT>AAT	p.T329N	ZBBX_uc011bpc.1_Missense_Mutation_p.T329N|ZBBX_uc003feq.2_Missense_Mutation_p.T300N	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	329						intracellular	zinc ion binding			ovary(2)	2						CTCTTGTGGAGTTCTACAAAA	0.343													20	33					1.33834e-09	1.34663e-09	1	1	0
SERPINI2	5276	broad.mit.edu	37	3	167184936	167184936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:167184936C>T	uc003fer.1	-	2	443	c.385G>A	c.(385-387)GAA>AAA	p.E129K	SERPINI2_uc003fes.1_Missense_Mutation_p.E139K|SERPINI2_uc003fet.1_Missense_Mutation_p.E129K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	129					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TGAAAAAATTCCTTGTTGCCA	0.373													9	37					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167246928	167246928	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:167246928A>G	uc003fev.1	-	10	1568	c.1262T>C	c.(1261-1263)GTT>GCT	p.V421A	WDR49_uc003feu.1_Missense_Mutation_p.V246A|WDR49_uc011bpd.1_Missense_Mutation_p.V485A|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	421	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						AATCGATCCAACTCCACTATG	0.378													46	11					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	169099072	169099072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169099072C>T	uc011bpj.1	-	2	681	c.278G>A	c.(277-279)GGA>GAA	p.G93E	MECOM_uc003ffl.2_Missense_Mutation_p.G65E|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.G93E|MECOM_uc011bpl.1_Missense_Mutation_p.G93E	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGTCCATATTCCTAGTCCTGC	0.483													23	72					0	0	1	0	0
LRRC34	151827	broad.mit.edu	37	3	169514631	169514631	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169514631T>C	uc003ffx.2	-	7	690	c.675A>G	c.(673-675)GCA>GCG	p.A225A	LRRC34_uc003ffy.2_Silent_p.A257A|LRRC34_uc011bpn.1_Silent_p.A257A|LRRC34_uc003ffz.2_Silent_p.A209A|LRRC34_uc003fga.3_Silent_p.A209A	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	225											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			ACATGTGTAGTGCAACAAGAC	0.368													34	14					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169555381	169555381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169555381G>A	uc003fgb.2	+	5	1645	c.1645G>A	c.(1645-1647)GAT>AAT	p.D549N		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	549											0						AGGAAAGAAGGATGTAAAAGG	0.358													14	4					0	0	1	0	0
LRRC31	79782	broad.mit.edu	37	3	169579558	169579558	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169579558C>T	uc003fgc.1	-	2	296	c.219G>A	c.(217-219)GAG>GAA	p.E73E	LRRC31_uc010hwp.1_Silent_p.E73E	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	73										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			GCTCATTTTTCTCCATACTGG	0.383													65	27					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644594	169644594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169644594C>T	uc003fgd.2	+	6	811	c.544C>T	c.(544-546)CGT>TGT	p.R182C	SAMD7_uc003fge.2_Missense_Mutation_p.R182C|SAMD7_uc011bpo.1_Missense_Mutation_p.R83C	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	182										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GCAGAGATGTCGTCGACTCAG	0.483													12	63					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169654139	169654139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169654139C>T	uc003fgd.2	+	8	1321	c.1054C>T	c.(1054-1056)CAT>TAT	p.H352Y	SAMD7_uc003fge.2_Missense_Mutation_p.H352Y|SAMD7_uc011bpo.1_Missense_Mutation_p.H253Y	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	352	SAM.									skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			ATTTAAAGATCATGCAATTGA	0.358													9	18					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664489	169664489	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169664489C>T	uc011bpp.1	-	2		c.3314G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CATACTTTTTCCTCTGCAAGG	0.522													14	50					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664574	169664574	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:169664574G>A	uc011bpp.1	-	2		c.3229C>T				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CCTCACTTTGGATGTGTGACA	0.527													17	3					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170802051	170802051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:170802051G>A	uc003fhh.2	-	26	3407	c.3062C>T	c.(3061-3063)TCG>TTG	p.S1021L	TNIK_uc003fhi.2_Missense_Mutation_p.S966L|TNIK_uc003fhj.2_Missense_Mutation_p.S992L|TNIK_uc003fhk.2_Missense_Mutation_p.S1013L|TNIK_uc003fhl.2_Missense_Mutation_p.S937L|TNIK_uc003fhm.2_Missense_Mutation_p.S958L|TNIK_uc003fhn.2_Missense_Mutation_p.S984L|TNIK_uc003fho.2_Missense_Mutation_p.S929L|TNIK_uc003fhg.2_Missense_Mutation_p.S199L|TNIK_uc003fhp.2_5'Flank	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	1021	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			ATTTACCACCGAAATCTTTCT	0.398													36	53					0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170802934	170802934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:170802934C>T	uc003fhh.2	-	25	3316	c.2971G>A	c.(2971-2973)GAA>AAA	p.E991K	TNIK_uc003fhi.2_Missense_Mutation_p.E936K|TNIK_uc003fhj.2_Missense_Mutation_p.E962K|TNIK_uc003fhk.2_Missense_Mutation_p.E983K|TNIK_uc003fhl.2_Missense_Mutation_p.E907K|TNIK_uc003fhm.2_Missense_Mutation_p.E928K|TNIK_uc003fhn.2_Missense_Mutation_p.E954K|TNIK_uc003fho.2_Missense_Mutation_p.E899K|TNIK_uc003fhg.2_Missense_Mutation_p.E169K|TNIK_uc003fhp.2_5'Flank	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	991	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TCATCCTCTTCATCTTCATCA	0.473													3	16					0	0	1	0	0
TNFSF10	8743	broad.mit.edu	37	3	172224669	172224669	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:172224669G>A	uc003fid.2	-	5	554	c.459C>T	c.(457-459)TCC>TCT	p.S153S	TNFSF10_uc003fie.2_3'UTR	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	153	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			ATGATTCCCAGGAGTTTATTT	0.433													7	22					0	0	1	0	0
ECT2	1894	broad.mit.edu	37	3	172537976	172537976	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:172537976C>T	uc003fii.2	+	24	2739	c.2601C>T	c.(2599-2601)TTC>TTT	p.F867F	ECT2_uc003fih.2_Silent_p.F866F|ECT2_uc003fij.1_Silent_p.F867F|ECT2_uc003fik.1_Silent_p.F867F|ECT2_uc003fil.1_Silent_p.F898F|ECT2_uc003fim.1_3'UTR	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	867					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTCCTTCCTTCTTTGAAAGGA	0.318													11	39					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	174814907	174814908	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:174814907_174814908AC>GT	uc003fit.2	+	2	458_459	c.371_372AC>GT	c.(370-372)CAC>CGT	p.H124R	NAALADL2_uc003fiu.1_Missense_Mutation_p.H117R	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	124	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		AACTTTTGCCACGTCTTAAAAA	0.386													64	52					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	175473076	175473076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:175473076C>T	uc003fit.2	+	13	2146	c.2059C>T	c.(2059-2061)CAG>TAG	p.Q687*		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	687	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		TGAACTTTTTCAGTCTGATGA	0.488													10	22					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	175520890	175520890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:175520890C>T	uc003fit.2	+	14	2374	c.2287C>T	c.(2287-2289)CAA>TAA	p.Q763*		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	763	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		TGAGACCCTTCAAGAAGCCCT	0.438													8	24					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179616033	179616033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:179616033C>T	uc003fki.1	-	3	225	c.95G>A	c.(94-96)GGA>GAA	p.G32E	PEX5L_uc011bqd.1_5'UTR|PEX5L_uc011bqe.1_Intron|PEX5L_uc011bqf.1_5'UTR|PEX5L_uc003fkj.1_Intron|PEX5L_uc010hxd.1_Missense_Mutation_p.G30E|PEX5L_uc011bqg.1_Missense_Mutation_p.G8E|PEX5L_uc011bqh.1_Intron	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	32					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			AGAGCCTTTTCCCTATAACAG	0.398													24	50					0	0	1	0	0
CCDC39	339829	broad.mit.edu	37	3	180372715	180372715	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:180372715C>T	uc010hxe.2	-	7	880	c.765G>A	c.(763-765)ACG>ACA	p.T255T	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	255	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CTTTTTCTCTCGTTTCCTGCT	0.289													5	9					0	0	1	0	0
KLHL24	54800	broad.mit.edu	37	3	183381248	183381248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:183381248C>T	uc003flv.2	+	4	1218	c.923C>T	c.(922-924)TCC>TTC	p.S308F	KLHL24_uc003flw.2_Missense_Mutation_p.S308F|KLHL24_uc003flx.2_Missense_Mutation_p.S308F	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	308						axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			TATTTTAGGTCCACTGGCTAT	0.333													14	37					0	0	1	0	0
DVL3	1857	broad.mit.edu	37	3	183883230	183883230	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:183883230C>T	uc003fms.2	+	7	854	c.714C>T	c.(712-714)ATC>ATT	p.I238I	DVL3_uc011bqw.1_Silent_p.I238I|DVL3_uc003fmt.2_5'UTR|DVL3_uc003fmu.2_Silent_p.I70I	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	238					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			TCAGCAGCATCACGGACTCCA	0.478													8	28					0	0	1	0	0
ALG3	10195	broad.mit.edu	37	3	183963139	183963139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:183963139G>A	uc003fne.2	-	4	483	c.452C>T	c.(451-453)CCC>CTC	p.P151L	ALG3_uc011brc.1_Missense_Mutation_p.P116L|ALG3_uc011brd.1_Missense_Mutation_p.P95L|ALG3_uc011bre.1_Missense_Mutation_p.P103L|ALG3_uc003fnf.1_Missense_Mutation_p.P111L|ALG3_uc011brf.1_Missense_Mutation_p.P43L	NM_005787	NP_005778	Q92685	ALG3_HUMAN	alpha-1,3-mannosyltransferase ALG3 isoform a	151	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity				0	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AAAGACGAAGGGAGGTACCTA	0.572													3	11					0	0	1	0	0
ECE2	9718	broad.mit.edu	37	3	183975477	183975477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:183975477C>T	uc003fni.3	+	2	451	c.413C>T	c.(412-414)GCT>GTT	p.A138V	ECE2_uc003fnh.3_Missense_Mutation_p.A138V	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	138	Cytoplasmic (Potential).|Methyltransferase-like region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCCTGCTGGCTGGGGAACGA	0.587													21	45					0	0	1	0	0
ECE2	9718	broad.mit.edu	37	3	184008852	184008852	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184008852A>G	uc003fni.3	+	17	2251	c.2213A>G	c.(2212-2214)AAC>AGC	p.N738S	ECE2_uc011brh.1_Missense_Mutation_p.N591S|ECE2_uc003fnl.3_Missense_Mutation_p.N666S|ECE2_uc003fnm.3_Missense_Mutation_p.N620S|ECE2_uc003fnk.3_Missense_Mutation_p.N591S|ECE2_uc011bri.1_Missense_Mutation_p.N653S|ECE2_uc010hxv.2_3'UTR	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	738	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AAAGAAGGGAACCTGCGGCCC	0.597													29	86					0	0	1	0	0
CLCN2	1181	broad.mit.edu	37	3	184064779	184064779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184064779C>T	uc003foi.2	-	23	2570	c.2446G>A	c.(2446-2448)GAC>AAC	p.D816N	CLCN2_uc003foh.2_Missense_Mutation_p.D305N|CLCN2_uc010hya.1_Missense_Mutation_p.D799N|CLCN2_uc011brl.1_Intron|CLCN2_uc011brm.1_Missense_Mutation_p.D772N	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	816	CBS 2.|Cytoplasmic (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	TAAGCATGGTCCACTCCCAGC	0.512													37	125					0	0	1	0	0
THPO	7066	broad.mit.edu	37	3	184091292	184091292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184091292C>T	uc003fol.1	-	5	522	c.307G>A	c.(307-309)GGA>AGA	p.G103R	THPO_uc003fom.1_Missense_Mutation_p.G103R|THPO_uc003fon.2_Missense_Mutation_p.G103R|THPO_uc011bro.1_Missense_Mutation_p.G103R|THPO_uc003fop.2_Missense_Mutation_p.G103R|THPO_uc011brp.1_Missense_Mutation_p.G103R|THPO_uc011brq.1_Missense_Mutation_p.G103R|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA|THPO_uc003fot.1_Missense_Mutation_p.G103R|THPO_uc003fou.1_Missense_Mutation_p.G103R	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	103					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CAAGTGGGTCCCAGTTGTCCC	0.602													8	31					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184103932	184103932	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184103932G>A	uc003fov.2	+	15	2163	c.1917G>A	c.(1915-1917)GGG>GGA	p.G639G	CHRD_uc003fow.2_Silent_p.G269G|CHRD_uc003fox.2_Silent_p.G639G|CHRD_uc003foy.2_Silent_p.G269G|CHRD_uc010hyc.2_Silent_p.G229G|CHRD_uc011brr.1_Silent_p.G269G	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	639	CHRD 4.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCCCAGAGGGGAGCTCCGAG	0.642													16	41					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184290679	184290679	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184290679C>T	uc003foz.2	+	3	1008	c.571C>T	c.(571-573)CTG>TTG	p.L191L		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	191	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TGGCTTCTACCTGGCCTTCCA	0.622													22	22					0	0	1	0	0
VPS8	23355	broad.mit.edu	37	3	184542543	184542543	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184542543G>T	uc003fpb.1	+	2	294	c.123G>T	c.(121-123)ATG>ATT	p.M41I	VPS8_uc010hyd.1_Missense_Mutation_p.M41I|VPS8_uc003fpc.1_Missense_Mutation_p.M41I	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	41							zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			ACATAGATATGGACAAGGAAC	0.368													22	6					2.89027e-11	2.912e-11	1	1	0
EHHADH	1962	broad.mit.edu	37	3	184910279	184910279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:184910279C>T	uc003fpf.2	-	7	1934	c.1907G>A	c.(1906-1908)GGA>GAA	p.G636E	EHHADH_uc011brs.1_Missense_Mutation_p.G540E	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	636						peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	TATCCCTTCTCCCAAGATACG	0.453													17	74					0	0	1	0	0
DGKG	1608	broad.mit.edu	37	3	185882805	185882805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:185882805G>A	uc003fqa.2	-	23	2635	c.2098C>T	c.(2098-2100)CTC>TTC	p.L700F	DGKG_uc003fqb.2_Missense_Mutation_p.L661F|DGKG_uc003fqc.2_Missense_Mutation_p.L675F|DGKG_uc011brx.1_Missense_Mutation_p.L641F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	700					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	TGGTCACTGAGGTCTGCAGAG	0.557													17	50					0	0	1	0	0
RTP1	132112	broad.mit.edu	37	3	186917391	186917391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:186917391C>T	uc003frg.2	+	2	355	c.325C>T	c.(325-327)CTC>TTC	p.L109F		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	109	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		CGTGGTCATCCTCTTCCACAT	0.662													14	55					0	0	1	0	0
MASP1	5648	broad.mit.edu	37	3	186968109	186968109	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:186968109C>T	uc003frh.1	-	8	1352	c.1020G>A	c.(1018-1020)GTG>GTA	p.V340V	MASP1_uc003fri.2_Silent_p.V340V|MASP1_uc003frj.2_Silent_p.V309V|MASP1_uc003frk.1_Silent_p.V340V|MASP1_uc011bse.1_Silent_p.V314V	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	340	Sushi 1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		TGTCCATCTCCACATTATCCT	0.448													48	89					0	0	1	0	0
BCL6	604	broad.mit.edu	37	3	187447775	187447775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:187447775G>A	uc003frp.3	-	5	875	c.418C>T	c.(418-420)CGT>TGT	p.R140C	BCL6_uc011bsf.1_Missense_Mutation_p.R140C|BCL6_uc010hza.2_Missense_Mutation_p.R38C|BCL6_uc003frq.1_Missense_Mutation_p.R140C	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	140					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		AACTCTTCACGAGGAGGCTTG	0.522			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								20	54					0	0	1	0	0
IL1RAP	3556	broad.mit.edu	37	3	190347254	190347254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:190347254G>A	uc003fsm.1	+	9	1224	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	IL1RAP_uc003fsk.2_Missense_Mutation_p.E340K|IL1RAP_uc003fsl.2_Missense_Mutation_p.E340K|IL1RAP_uc010hzf.2_Missense_Mutation_p.E199K|IL1RAP_uc010hzg.1_Missense_Mutation_p.E340K|IL1RAP_uc003fsn.1_Intron|IL1RAP_uc003fso.1_Missense_Mutation_p.E340K|IL1RAP_uc003fsp.1_Intron|IL1RAP_uc003fsq.2_Missense_Mutation_p.E340K	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	340	Extracellular (Potential).|Ig-like C2-type 3.				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		TGCCAAAGGCGAAGTTGCCAA	0.428													6	18					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193031840	193031840	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:193031840C>T	uc011bsq.1	-	19	2301	c.2301G>A	c.(2299-2301)GAG>GAA	p.E767E		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	767					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAGGTCCAGTCTCTTGGTTCT	0.527													18	76					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193061825	193061825	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:193061825G>A	uc011bsq.1	-	9	834	c.834C>T	c.(832-834)TCC>TCT	p.S278S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	278					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CCAAGAGACGGGATTCCAGCT	0.418													12	15					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193156317	193156317	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:193156317G>A	uc003ftd.2	-	23	2727	c.2619C>T	c.(2617-2619)GCC>GCT	p.A873A	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	873	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGAAAGGTGAGGCCACAGATG	0.448													20	23					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193158366	193158366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:193158366C>T	uc003ftd.2	-	21	2608	c.2500G>A	c.(2500-2502)GAA>AAA	p.E834K	ATP13A4_uc003fte.1_Missense_Mutation_p.E834K|ATP13A4_uc011bsr.1_Missense_Mutation_p.E305K|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	834	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGAAATTCTTCCACCAGACTG	0.458													28	49					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193182888	193182888	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:193182888G>A	uc003ftd.2	-	12	1410	c.1302C>T	c.(1300-1302)GCC>GCT	p.A434A	ATP13A4_uc003fte.1_Silent_p.A434A|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.A140A	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	434	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGACGTCAAGGGCTTTCCTCA	0.388													10	38					0	0	1	0	0
LRRC15	131578	broad.mit.edu	37	3	194080301	194080301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:194080301G>A	uc003ftu.2	-	2	1558	c.1472C>T	c.(1471-1473)CCA>CTA	p.P491L	LRRC15_uc003ftt.2_Missense_Mutation_p.P497L	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	491	Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		GGGTGTGTCTGGGTACCATGG	0.517													11	19					0	0	1	0	0
TMEM44	93109	broad.mit.edu	37	3	194346632	194346632	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:194346632T>A	uc010hzn.2	-	3	521	c.352A>T	c.(352-354)AAT>TAT	p.N118Y	TMEM44_uc003fue.2_Missense_Mutation_p.N118Y|TMEM44_uc003fud.2_Missense_Mutation_p.N118Y|TMEM44_uc003fuf.2_Missense_Mutation_p.N118Y|TMEM44_uc011bsv.1_Missense_Mutation_p.N118Y|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	118	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		TCACCTGAATTAGACTTGAAT	0.473													28	70					0	0	1	0	0
TMEM44	93109	broad.mit.edu	37	3	194346634	194346634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:194346634G>A	uc010hzn.2	-	3	519	c.350C>T	c.(349-351)TCT>TTT	p.S117F	TMEM44_uc003fue.2_Missense_Mutation_p.S117F|TMEM44_uc003fud.2_Missense_Mutation_p.S117F|TMEM44_uc003fuf.2_Missense_Mutation_p.S117F|TMEM44_uc011bsv.1_Missense_Mutation_p.S117F|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	117	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		ACCTGAATTAGACTTGAATTT	0.478													28	70					0	0	1	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400716	195400716	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:195400716C>T	uc003fuw.2	+	9	1206	c.12C>T	c.(10-12)ATC>ATT	p.I4I	SDHAP2_uc011btb.1_Nonsense_Mutation_p.Q152*|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						TGGCCAGGATCAGATTGTGCC	0.587													21	2					0	0	1	0	0
MUC20	200958	broad.mit.edu	37	3	195451910	195451910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:195451910G>A	uc010hzo.2	+	2	562	c.436G>A	c.(436-438)GAT>AAT	p.D146N	MUC20_uc010hzp.2_Missense_Mutation_p.D111N|MUC20_uc011bte.1_5'Flank	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CCTTTGCACCGATGACAGCTC	0.557													77	130					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195517463	195517463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:195517463C>T	uc011bto.1	-	2	1448	c.988G>A	c.(988-990)GTG>ATG	p.V330M	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.V212M	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	335					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTGGTCTCCACGCTCTGAGTC	0.453													37	159					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195518009	195518009	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:195518009G>T	uc011bto.1	-	2	902	c.442C>A	c.(442-444)CTT>ATT	p.L148I	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.L30I	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	153					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTGTTTCCAAGAGTGGAGTCT	0.458													37	66					6.97489e-18	7.0512e-18	1	1	0
MIR922	100126321	broad.mit.edu	37	3	197401435	197401435	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:197401435G>A	hsa-mir-922|MI0005714	-			c.13G>A			KIAA0226_uc003fyc.2_3'UTR|KIAA0226_uc003fyd.3_3'UTR																	0						GACAGGGAGAGGGAAAACGCC	0.512													14	8					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	648658	648658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:648658G>A	uc003gap.2	+	6	1026	c.973G>A	c.(973-975)GAG>AAG	p.E325K	PDE6B_uc003gao.3_Missense_Mutation_p.E325K|PDE6B_uc011buy.1_Missense_Mutation_p.E46K|uc003gaq.1_Intron	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	325	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CCACGGCAAGGAGGAGATCAA	0.607													37	9					0	0	1	0	0
KIAA1530	57654	broad.mit.edu	37	4	1348913	1348913	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:1348913C>T	uc003gde.3	+	7	1503	c.1056C>T	c.(1054-1056)ACC>ACT	p.T352T		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	352											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			AGCGCTTCACCCGCGTCGGGA	0.622													9	11					0	0	1	0	0
NOP14	8602	broad.mit.edu	37	4	2952880	2952880	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:2952880G>A	uc003ggj.1	-	7	1035	c.963C>T	c.(961-963)TTC>TTT	p.F321F	C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Silent_p.F67F|NOP14_uc003ggk.3_Silent_p.F321F|NOP14_uc003ggl.2_Silent_p.F321F|NOP14_uc010icq.1_RNA	NM_003703	NP_003694	P78316	NOP14_HUMAN	probable nucleolar complex protein 14	321					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	mitochondrion|Noc4p-Nop14p complex|small-subunit processome	snoRNA binding			pancreas(1)	1						TATCTAGCACGAAGCCATCAT	0.358													69	14					0	0	1	0	0
STK32B	55351	broad.mit.edu	37	4	5458575	5458575	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:5458575C>T	uc003gih.1	+	8	772	c.708C>T	c.(706-708)ATC>ATT	p.I236I	STK32B_uc010ida.1_Silent_p.I189I	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	236	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TCGATGAAATCCTCAACATGT	0.572													6	2					0	0	1	0	0
WFS1	7466	broad.mit.edu	37	4	6296833	6296833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:6296833C>T	uc003giy.2	+	7	944	c.778C>T	c.(778-780)CCC>TCC	p.P260S	WFS1_uc003gix.2_Missense_Mutation_p.P260S|WFS1_uc003giz.2_Missense_Mutation_p.P78S	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	260					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GGGCGTCATCCCCAGCAGCCT	0.577													86	108					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7730138	7730139	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:7730138_7730139CC>TT	uc003gkb.3	+	22	2931_2932	c.2931_2932CC>TT	c.(2929-2934)ACCCCT>ACTTCT	p.P978S	SORCS2_uc011bwi.1_Missense_Mutation_p.P806S	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	978	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						ACCCCAACACCCCTGAGTGGAG	0.589													8	9					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8021970	8021971	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:8021970_8021971GG>AA	uc003gko.2	-	12	1371_1372	c.1228_1229CC>TT	c.(1228-1230)CCC>TTC	p.P410F	ABLIM2_uc003gkk.2_Missense_Mutation_p.P73F|ABLIM2_uc003gkl.2_Intron|ABLIM2_uc003gkj.3_Missense_Mutation_p.P443F|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Missense_Mutation_p.P410F|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	410					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						GTAGGTGGAGGGGGGCGGCTTG	0.629													10	9					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8221201	8221201	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:8221201G>A	uc003gkv.3	+	9	1157	c.1056G>A	c.(1054-1056)TCG>TCA	p.S352S	SH3TC1_uc003gkw.3_Silent_p.S276S|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	352	SH3.						binding			large_intestine(2)|pancreas(1)	3						ACGCAGCCTCGGGCCGGGTGG	0.697													15	2					0	0	1	0	0
GPR78	27201	broad.mit.edu	37	4	8583242	8583242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:8583242C>T	uc003glk.2	+	1	952	c.533C>T	c.(532-534)GCC>GTC	p.A178V	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	178	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						ACGCTCCATGCCGTGGGCTTC	0.697													5	6					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8616138	8616138	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:8616138G>A	uc003glm.2	+	9	1542	c.1416G>A	c.(1414-1416)GAG>GAA	p.E472E	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Silent_p.E335E|CPZ_uc003glo.2_Silent_p.E461E|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	472		Nucleophile (By similarity).			proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						TCACGGTAGAGCTGGGCTGTG	0.572													17	15					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9828063	9828063	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:9828063G>A	uc003gmc.2	-	12	1642	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	SLC2A9_uc003gmd.2_Silent_p.I498I	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	527	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CAGCTGAGTCGATTTTCTCTT	0.423													35	38					0	0	1	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446595	10446595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:10446595G>A	uc003gmn.2	-	3	1845	c.1358C>T	c.(1357-1359)TCC>TTC	p.S453F		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	453					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						ATTAATGAAGGATTTTCCATT	0.323													19	5					0	0	1	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400794	11400794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:11400794G>A	uc003gmq.2	-	2	1159	c.836C>T	c.(835-837)CCC>CTC	p.P279L		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	279						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GAGTAGTTTGGGATCGACTTG	0.483													38	9					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20552460	20552460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:20552460G>A	uc003gpr.1	+	25	2704	c.2500G>A	c.(2500-2502)GGA>AGA	p.G834R	SLIT2_uc003gps.1_Missense_Mutation_p.G826R	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	834	LRR 20.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TTCTCTACATGGAAATGACAT	0.328													9	20					0	0	1	0	0
KCNIP4	80333	broad.mit.edu	37	4	21305491	21305491	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:21305491G>A	uc003gqf.1	-	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I	KCNIP4_uc003gqg.1_Intron|KCNIP4_uc003gqh.1_Intron|KCNIP4_uc003gqi.1_Intron	NM_147183	NP_671712	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 4	Error:Variant_position_missing_in_Q6PIL6_after_alignment						plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				GCACAATGACGATCAGAACTG	0.433													9	14					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815590	23815590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:23815590C>T	uc003gqs.2	-	8	1636	c.1516G>A	c.(1516-1518)GCC>ACC	p.A506T	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	506					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				CCATCCATGGCTAGTCCTGAA	0.428													24	23					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25665839	25665839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:25665839G>A	uc003grr.2	+	4	347	c.266G>A	c.(265-267)GGG>GAG	p.G89E	SLC34A2_uc003grs.2_Missense_Mutation_p.G88E|SLC34A2_uc010iev.2_Missense_Mutation_p.G88E	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	89	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GACACCAAAGGGAAGATTCTC	0.468													27	29					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678327	25678327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:25678327G>A	uc003grr.2	+	13	2110	c.2029G>A	c.(2029-2031)GAG>AAG	p.E677K	SLC34A2_uc003grs.2_Missense_Mutation_p.E676K|SLC34A2_uc010iev.2_Missense_Mutation_p.E676K	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	677	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GGCTCAGGGTGAGGTCCCTGC	0.557													13	28					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25835180	25835180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:25835180G>A	uc003gru.3	-	4	1024	c.872C>T	c.(871-873)TCA>TTA	p.S291L		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	291						integral to membrane	binding				0						AAGCCACAATGAAACAGTAAA	0.368													5	6					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36069761	36069761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:36069761C>T	uc003gsq.1	-	33	5221	c.4883G>A	c.(4882-4884)CGA>CAA	p.R1628Q	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1628					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCGATGTTTTCGGGGTCGATT	0.507													25	46					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36093595	36093595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:36093595C>T	uc003gsq.1	-	28	4671	c.4333G>A	c.(4333-4335)GAA>AAA	p.E1445K		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1445	PH 5.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GATGGTTCTTCTTTGATTTTC	0.353													24	36					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36122927	36122927	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:36122927G>C	uc003gsq.1	-	23	4106	c.3768C>G	c.(3766-3768)ATC>ATG	p.I1256M		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1256	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCATGTGATTGATTTCTGAGC	0.343													15	11					0	0	1	0	0
LOC344967	344967	broad.mit.edu	37	4	40045341	40045341	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:40045341C>T	uc011byr.1	-	3	809	c.315G>A	c.(313-315)CGG>CGA	p.R105R		NR_027277				RecName: Full=Cytosolic acyl coenzyme A thioester hydrolase-like;          EC=3.1.2.2; AltName: Full=Acyl-CoA thioesterase 7-like;												0						CCTGCTCCTGCCGGAAATACA	0.587													12	0					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40350962	40350962	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:40350962C>T	uc003gva.1	+	4	445	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	143	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	ATGGGCTGATCACCTGGGATG	0.507													26	31					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440320	40440320	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:40440320G>A	uc003gvc.2	-	4	1301	c.591C>T	c.(589-591)GCC>GCT	p.A197A	RBM47_uc003gvd.2_Silent_p.A197A|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.A159A|RBM47_uc003gvg.1_Silent_p.A197A	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	197	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						ACTCCACGAAGGCGAAGCCGC	0.662													11	32					0	0	1	0	0
APBB2	323	broad.mit.edu	37	4	40946957	40946957	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:40946957G>A	uc003gvl.2	-	7	1596	c.966C>T	c.(964-966)TCC>TCT	p.S322S	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Silent_p.S322S|APBB2_uc003gvn.2_Silent_p.S323S|APBB2_uc011byt.1_Silent_p.S305S	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	322	WW.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CTGCTGGGATGGAGACGGGCC	0.527													45	5					0	0	1	0	0
SLC30A9	10463	broad.mit.edu	37	4	42041011	42041011	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:42041011C>T	uc003gwl.2	+	8	824	c.678C>T	c.(676-678)TCC>TCT	p.S226S	SLC30A9_uc011byx.1_5'UTR	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	226					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						AGCCACGCTCCAGAACAGCAT	0.363													9	23					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42414941	42414941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:42414941C>T	uc003gwr.2	-	37	3719	c.3487G>A	c.(3487-3489)GAA>AAA	p.E1163K	ATP8A1_uc003gwq.2_Missense_Mutation_p.E389K|ATP8A1_uc003gws.2_Missense_Mutation_p.E1148K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1163	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	CATCACCATTCGTCGGGCCTC	0.483													5	5					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42524256	42524256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:42524256C>T	uc003gwr.2	-	22	2100	c.1868G>A	c.(1867-1869)CGA>CAA	p.R623Q	ATP8A1_uc003gws.2_Missense_Mutation_p.R608Q	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	623	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ATAGACTGCTCGCCACTCCTG	0.433													12	7					0	0	1	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895469	42895469	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:42895469G>A	uc003gwt.2	+	1	186	c.186G>A	c.(184-186)CAG>CAA	p.Q62Q		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	62					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						ATGGACAGCAGAATGGCCACA	0.483													86	13					0	0	1	0	0
GUF1	60558	broad.mit.edu	37	4	44684357	44684357	+	Nonsense_Mutation	SNP	C	T	T	rs116300982	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:44684357C>T	uc003gww.3	+	5	721	c.514C>T	c.(514-516)CAA>TAA	p.Q172*	GUF1_uc010ifz.1_RNA	NM_021927	NP_068746	Q8N442	GUF1_HUMAN	GUF1 GTPase homolog	172					translation	mitochondrial inner membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1						TCAGGGAATTCAAGCCCAAAC	0.333													59	9					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46043062	46043062	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:46043062G>A	uc003gxb.2	-	9	1493	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	447	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AAGCGGTTGGGAAAAATATTC	0.368													26	28					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46060331	46060331	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:46060331G>A	uc003gxb.2	-	7	971	c.819C>T	c.(817-819)TTC>TTT	p.F273F		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	273	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TCTGAATAGTGAAATATCCCA	0.343													14	15					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:46066470C>T	uc003gxb.2	-	5	765	c.613G>A	c.(613-615)GAA>AAA	p.E205K		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	205	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CTTGAAAATTCCAGTGGACAG	0.274													18	45					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46312248	46312248	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:46312248T>C	uc003gxc.3	-	5	1174	c.501A>G	c.(499-501)CCA>CCG	p.P167P	GABRA2_uc010igc.2_Silent_p.P167P|GABRA2_uc011bzc.1_Silent_p.P112P|GABRA2_uc003gxe.2_Silent_p.P167P	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	167	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCAAGTGCATTGGGCATTCAG	0.368													33	21					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46314659	46314659	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:46314659G>A	uc003gxc.3	-	4	1003	c.330C>T	c.(328-330)ATC>ATT	p.I110I	GABRA2_uc010igc.2_Silent_p.I110I|GABRA2_uc011bzc.1_Silent_p.I55I|GABRA2_uc003gxe.2_Silent_p.I110I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	110	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTAGTCGAAGGATATTCATAG	0.289													33	6					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47428008	47428008	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47428008C>T	uc003gxh.2	+	9	1772	c.1398C>T	c.(1396-1398)GTC>GTT	p.V466V	GABRB1_uc011bze.1_Silent_p.V396V	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	466	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTTTTAATGTCGTCTATTGGC	0.418													12	45					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47525183	47525183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47525183G>A	uc003gxk.1	+	4	804	c.640G>A	c.(640-642)GGA>AGA	p.G214R	ATP10D_uc003gxj.3_Missense_Mutation_p.G214R	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	214	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TGGTCTTGATGGAGAGAGCAA	0.433													12	42					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47647113	47647113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47647113C>T	uc003gxm.2	-	14	2035	c.1942G>A	c.(1942-1944)GAC>AAC	p.D648N	CORIN_uc011bzf.1_Missense_Mutation_p.D509N|CORIN_uc011bzg.1_Missense_Mutation_p.D581N|CORIN_uc011bzh.1_Missense_Mutation_p.D611N	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	648	Extracellular (Potential).|LDL-receptor class A 6.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TTTTTCTCGTCCATGTAATCA	0.388													22	44					0	0	1	0	0
NFXL1	152518	broad.mit.edu	37	4	47898590	47898590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47898590G>A	uc010igh.2	-	10	1456	c.1279C>T	c.(1279-1281)CAT>TAT	p.H427Y	NFXL1_uc003gxp.2_Missense_Mutation_p.H427Y|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.H427Y	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	427						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GAACATCTATGGATTCCGCAT	0.373													11	22					0	0	1	0	0
CNGA1	1259	broad.mit.edu	37	4	47939103	47939103	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47939103G>T	uc003gxt.3	-	11	1674	c.1408C>A	c.(1408-1410)CAC>AAC	p.H470N	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.H539N	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	470	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						GTGTCTAAGTGAACGTTGATG	0.398													33	68					1.22384e-17	1.23676e-17	1	1	0
CNGA1	1259	broad.mit.edu	37	4	47939241	47939241	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:47939241G>A	uc003gxt.3	-	11	1536	c.1270C>T	c.(1270-1272)CGA>TGA	p.R424*	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Nonsense_Mutation_p.R493*	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	424	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						CTTACATTTCGAAAATGCATA	0.348													35	71					0	0	1	0	0
SLC10A4	201780	broad.mit.edu	37	4	48490878	48490878	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:48490878G>A	uc003gyc.2	+	3	1455	c.1236G>A	c.(1234-1236)GAG>GAA	p.E412E	ZAR1_uc003gyd.2_5'Flank	NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	412	Extracellular (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						TAAAAGAAGAGGAAATGGCAG	0.348													9	22					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49000535	49000535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:49000535C>T	uc003gyv.2	+	6	954	c.772C>T	c.(772-774)CGT>TGT	p.R258C	CWH43_uc011bzl.1_Missense_Mutation_p.R231C	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	258					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TTTGTGGTTTCGTGGTACTGG	0.443													77	30					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49009250	49009250	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:49009250C>T	uc003gyv.2	+	8	1275	c.1093C>T	c.(1093-1095)CTA>TTA	p.L365L	CWH43_uc011bzl.1_Silent_p.L338L	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	365	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GCTGAATATGCTATTTGGTCC	0.323													17	46					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52926663	52926663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:52926663G>A	uc003gzl.2	+	2	444	c.166G>A	c.(166-168)GGG>AGG	p.G56R	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.G56R|SPATA18_uc003gzk.1_Missense_Mutation_p.G56R	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	56					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			ACAACTCTTTGGGATCCTCAC	0.453													8	23					0	0	1	0	0
SCFD2	152579	broad.mit.edu	37	4	54139995	54139995	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:54139995G>A	uc003gzu.2	-	4	1443	c.1309C>T	c.(1309-1311)CAG>TAG	p.Q437*	SCFD2_uc010igm.2_Nonsense_Mutation_p.Q437*	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	437					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CAACATACCTGAAGAAGGAGC	0.423													38	1					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54343061	54343061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:54343061G>A	uc003hag.3	-	9	2007	c.1751C>T	c.(1750-1752)TCG>TTG	p.S584L	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.S488L|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	584	PDZ 3.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GAGTACTATCGAGGATGATGT	0.522													89	9					0	0	1	0	0
KIT	3815	broad.mit.edu	37	4	55593603	55593603	+	Missense_Mutation	SNP	T	C	C	rs121913235		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:55593603T>C	uc010igr.2	+	11	1756	c.1669T>C	c.(1669-1671)TGG>CGG	p.W557R	KIT_uc010igs.2_Missense_Mutation_p.W553R|KIT_uc010igt.1_Missense_Mutation_p.W6R	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	557	Cytoplasmic (Potential).		Missing (in GIST; somatic mutation).		male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.W557_K558del(309)|p.W557R(70)|p.W557G(41)|p.W557_E561del(36)|p.K550_K558del(33)|p.W557_V559>F(29)|p.E554_K558del(26)|p.W557_V559>C(24)|p.M552_W557del(19)|p.Q556_W557del(13)|p.W557_V560>C(11)|p.Y553_K558del(11)|p.W557_V559del(11)|p.Q556_V560del(10)|p.Y553_K558>(8)|p.W557del(8)|p.W557_K558>E(8)|p.V555_V559del(8)|p.Q556_V559>H(7)|p.V555_K558del(6)|p.W557_Q575del(6)|p.Q556_V560>H(6)|p.Q556_K558del(6)|p.Q556_V559>HT(5)|p.Y553_W557del(5)|p.M552_V559>I(5)|p.Q556_D572del(5)|p.Q556_V559del(5)|p.E554_V559del(5)|p.W557_V560>F(4)|p.V555_P573del(4)|p.K550_W557del(4)|p.V555_I571del(4)|p.W557_V560del(4)|p.M552_K558del(4)|p.M552_D572del(4)|p.V555_V560del(4)|p.W557_K558>CP(3)|p.Q556_D572>H(3)|p.Y553_T574>S(3)|p.W557_K558>S(3)|p.E554_D572>A(3)|p.W557?(3)|p.Q556_L576del(3)|p.W557_E562del(3)|p.W557S(3)|p.V555_D572del(3)|p.Q556_T574del(3)|p.P551_V559del(3)|p.W557C(3)|p.E554_W557>V(3)|p.Q556_K558>R(3)|p.E554_W557del(3)|p.K550_V559del(3)|p.Y553_E561>LK(2)|p.P551_K558del(2)|p.M552_E561>K(2)|p.L548_K558>Q(2)|p.V555_E562del(2)|p.W557_P573>S(2)|p.W557_K558>CT(2)|p.E554_K558>G(2)|p.M552_K558>T(2)|p.W557_K558>F(2)|p.W557_K558>Q(2)|p.W557_T574del(2)|p.P551_V569del(2)|p.K550_K558>Q(2)|p.Y553_E561del(2)|p.K550fs*6(2)|p.Q556_K558>HT(2)|p.Q556_N564>R(2)|p.V555_Q575del(2)|p.W557_D572del(2)|p.W557_N564del(2)|p.Y547_K558>Q(2)|p.E554_K557>G(2)|p.K550_W557>IL(2)|p.W557_I571del(2)|p.K550_W557>QR(2)|p.Q556_N564>H(2)|p.P551_V559>I(1)|p.P551_W557>R(1)|p.Q556_K558>HPCR(1)|p.K550_W557>IR(1)|p.V555_Y570del(1)|p.M552_T574>TESA(1)|p.Q556_D572>PS(1)|p.Q556_I563del(1)|p.W557_I563>FP(1)|p.M552_V560del(1)|p.K550_Y568del(1)|p.M552_W557>Z(1)|p.M552_K558>NE(1)|p.V555_V559>G(1)|p.E554_N564>D(1)|p.K550_W557>FL(1)|p.Y553_W557>R(1)|p.E554_E562del(1)|p.K550_V560>L(1)|p.W557_T575>CP(1)|p.E554_Y570del(1)|p.E554_E561del(1)|p.Q556_N566>SNNLQLY(1)|p.W557_K558>C(1)|p.Q556_V559>PF(1)|p.E554_I571del(1)|p.W557_K558>Y(1)|p.V555_V560>V(1)|p.W557_E561>PS(1)|p.W557_K558>SS(1)|p.W557_K558>FP(1)|p.Q556_L576>H(1)|p.W557*(1)|p.Y553_K558>SE(1)|p.Q556_P573del(1)|p.Q556_E561>HH(1)|p.W557_K558>FQ(1)|p.P551_W557del(1)|p.Y553_P573del(1)|p.W557F(1)|p.Q556_V560>TTF(1)|p.Q556_V559>HF(1)|p.W557_I563>T(1)|p.P551_V559del>L(1)|p.E554_D572del(1)|p.W557_Y570del(1)|p.Y553_V559del(1)|p.V555_V560>H(1)|p.Q556_K558>PT(1)|p.P551_V569>L(1)|p.Q556_N564del(1)|p.E554_V560>K(1)|p.E554_V560>D(1)|p.M552_V559>IT(1)|p.Q556_W557>E(1)|p.V555_N566>D(1)|p.Q556_V560>HNLQLY(1)|p.W557_V559>I(1)|p.Q556_K558>N(1)|p.Q556_K558>T(1)|p.W557_K558>CQ(1)|p.M552_Y570del(1)|p.K550_K558>G(1)|p.V555_G565del(1)|p.Y553_K558>L(1)|p.V555_I563del(1)|p.Q556_V560>F(1)|p.M552_I563del(1)|p.V555_V560>T(1)|p.K550_W557>HR(1)|p.Q556_K558>H(1)|p.P551_E561>Q(1)|p.Q556_E561del(1)|p.V555_W557del(1)|p.V555_N564del(1)|p.Y553_L576>NCLHLYSSQ(1)|p.W557_V559>E(1)|p.E554_N564del(1)|p.Y553_V559>E(1)|p.Q556_E561>P(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TGAAGTACAGTGGAAGGTTGT	0.388		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				77	27					0	0	1	0	0
KIT	3815	broad.mit.edu	37	4	55599339	55599339	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:55599339A>T	uc010igr.2	+	17	2552	c.2465A>T	c.(2464-2466)AAT>ATT	p.N822I	KIT_uc010igs.2_Missense_Mutation_p.N818I	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	822	Protein kinase.|Cytoplasmic (Potential).		N -> K (in a germ cell tumor of the testis; somatic mutation).		male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.N822K(83)|p.N822Y(9)|p.N822H(3)|p.S821_N822>GY(1)|p.N822T(1)|p.N822S(1)|p.N822N(1)|p.N822I(1)|p.N822D(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	AATGATTCTAATTATGTGGTT	0.378		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				186	4					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62812737	62812737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:62812737C>T	uc010ihh.2	+	13	2494	c.2321C>T	c.(2320-2322)TCT>TTT	p.S774F	LPHN3_uc003hcq.3_Missense_Mutation_p.S774F|LPHN3_uc003hct.2_Missense_Mutation_p.S167F	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	761	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ACAAATCATTCTGTTATTGTC	0.393													158	15					0	0	1	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68719814	68719814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:68719814C>T	uc003hdq.2	-	3	286	c.221G>A	c.(220-222)AGG>AAG	p.R74K	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_5'UTR	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	74	SEA.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ACTCAAAGTCCTGTATTCCTG	0.284													16	34					0	0	1	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68934444	68934444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:68934444C>T	uc003hdt.1	-	7	696	c.647G>A	c.(646-648)GGG>GAG	p.G216E	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	216	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TGGCCATTCCCCTTCCATAGC	0.527													19	21					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69334625	69334625	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:69334625T>C	uc003hdz.3	+	4	351	c.287T>C	c.(286-288)TTA>TCA	p.L96S		NM_014058	NP_054777			transmembrane protease, serine 11E																		AAATCTCCATTAAGGGAAGAA	0.303													71	14					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69513019	69513019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:69513019C>T	uc011cal.1	-	6	1434	c.1396G>A	c.(1396-1398)GAG>AAG	p.E466K		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	466					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ATGACAAACTCAATCCAGAAG	0.443													30	45					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962703	69962703	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:69962703C>T	uc003heg.3	+	1	511	c.465C>T	c.(463-465)CCC>CCT	p.P155P	UGT2B7_uc010ihq.2_Silent_p.P155P	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	155					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTATTTTTCCCTGTAGTGAGC	0.353													26	35					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70152500	70152500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:70152500G>A	uc003hej.2	+	3	903	c.901G>A	c.(901-903)GAA>AAA	p.E301K	UGT2B28_uc010ihr.2_Missense_Mutation_p.E301K	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	301					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GAGCTCTGGTGAAAATGGTGT	0.413													31	39					0	0	1	0	0
UGT2A1	10941	broad.mit.edu	37	4	70513183	70513183	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:70513183G>A	uc003hem.3	-	1	243	c.180C>T	c.(178-180)TTC>TTT	p.F60F	UGT2A1_uc011caq.1_Silent_p.F60F|UGT2A1_uc010ihu.2_Silent_p.F60F|UGT2A1_uc010iht.2_Silent_p.F60F	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	60	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						TTGGTGTGATGAAAAGTGCAC	0.378													17	52					0	0	1	0	0
SULT1E1	6783	broad.mit.edu	37	4	70715264	70715264	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:70715264C>T	uc003heo.2	-	5	500	c.387G>A	c.(385-387)CGG>CGA	p.R129R	SULT1E1_uc010ihv.1_Silent_p.R129R	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	129	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						CCTTTGCATTCCGGCAAAGAT	0.333													31	23					0	0	1	0	0
C4orf7	260436	broad.mit.edu	37	4	71099752	71099752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71099752G>A	uc003hfd.2	+	4	191	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	36						extracellular region				central_nervous_system(1)	1						TGACAGCGATGAATTAGCTTC	0.363													34	154					0	0	1	0	0
C4orf35	85438	broad.mit.edu	37	4	71201725	71201725	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71201725C>T	uc003hff.2	+	1	1055	c.969C>T	c.(967-969)TTC>TTT	p.F323F		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	323						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				GATATGACTTCGTTGTCCCTG	0.413													13	57					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71346721	71346721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71346721C>T	uc011cat.1	+	4	548	c.260C>T	c.(259-261)CCT>CTT	p.P87L	MUC7_uc011cau.1_Missense_Mutation_p.P87L|MUC7_uc003hfj.2_Missense_Mutation_p.P87L|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	87						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			TTCCCAAATCCTCACCAGCCA	0.463													54	34					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71390640	71390640	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71390640C>T	uc003hfk.1	+	5	345	c.256C>T	c.(256-258)CTG>TTG	p.L86L	AMTN_uc010ihy.1_Silent_p.L85L	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	86					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			CCCATTGACCCTGGGAGGGTT	0.448													17	37					0	0	1	0	0
AMTN	401138	broad.mit.edu	37	4	71398172	71398172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71398172G>A	uc003hfk.1	+	9	709	c.620G>A	c.(619-621)GGA>GAA	p.G207E	AMTN_uc010ihy.1_Missense_Mutation_p.G206E	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	207					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			TTTCTTCCAGGAATTCAGTAA	0.294													12	25					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71472212	71472213	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71472212_71472213GG>AA	uc003hfl.2	+	13	1184_1185	c.1109_1110GG>AA	c.(1108-1110)GGG>GAA	p.G370E		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	370					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			AGCCCTTCAGGGAAGATGAAGG	0.559													11	77					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509277	71509277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71509277G>A	uc011caw.1	+	9	2415	c.2134G>A	c.(2134-2136)GAG>AAG	p.E712K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	712					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AAAACCAAGGGAGGATTTTTA	0.408													24	43					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71509961	71509961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:71509961G>A	uc011caw.1	+	9	3099	c.2818G>A	c.(2818-2820)GAA>AAA	p.E940K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	940					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGAGAAGAGGGAAAGCCAAAA	0.458													60	41					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72397811	72397811	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:72397811C>T	uc003hfy.2	+	17	2316	c.2199C>T	c.(2197-2199)ATC>ATT	p.I733I	SLC4A4_uc010iic.2_Silent_p.I733I|SLC4A4_uc010iib.2_Silent_p.I733I|SLC4A4_uc003hfz.2_Silent_p.I733I|SLC4A4_uc003hgc.3_Silent_p.I689I|SLC4A4_uc010iid.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	733	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TTGCCATTATCTTGTCCATTC	0.378													18	22					0	0	1	0	0
GC	2638	broad.mit.edu	37	4	72622457	72622457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:72622457C>T	uc003hge.2	-	8	1159	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	GC_uc003hgd.2_Missense_Mutation_p.D214N|GC_uc010iie.2_Missense_Mutation_p.D336N|GC_uc010iif.2_Missense_Mutation_p.D355N	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	336	Albumin 2.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	TTTCCTGGATCACACACATCT	0.453													12	29					0	0	1	0	0
GC	2638	broad.mit.edu	37	4	72635064	72635064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:72635064C>T	uc003hge.2	-	2	265	c.112G>A	c.(112-114)GAG>AAG	p.E38K	GC_uc003hgd.2_5'UTR|GC_uc010iie.2_Missense_Mutation_p.E38K|GC_uc010iif.2_Missense_Mutation_p.E57K	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	38	Albumin 1.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	GTGAAGTCCTCCTTTCCCAGA	0.428													17	28					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74270111	74270111	+	Missense_Mutation	SNP	C	T	T	rs80008208		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:74270111C>T	uc003hgs.3	+	1	140	c.67C>T	c.(67-69)CGT>TGT	p.R23C	ALB_uc003hgw.3_Missense_Mutation_p.R23C|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.R23C|ALB_uc010iii.2_Missense_Mutation_p.R23C|ALB_uc003hgu.3_5'UTR|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	23	Albumin 1.		R -> C (in Redhill/Malmo-I/Tradate; associated with T-344 in Redhill).|R -> H (in Fukuoka-2/Lille/Taipei/Varese/ Komagome-3).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GGGTGTGTTTCGTCGAGATGC	0.368													55	42					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74283258	74283258	+	Missense_Mutation	SNP	C	T	T	rs78575701		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:74283258C>T	uc003hgs.3	+	11	1373	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	ALB_uc003hgw.3_Missense_Mutation_p.R242C|ALB_uc011cbe.1_Missense_Mutation_p.R113C|ALB_uc003hgt.3_Missense_Mutation_p.R434C|ALB_uc010iii.2_Missense_Mutation_p.R319C|ALB_uc003hgu.3_Missense_Mutation_p.R284C|ALB_uc003hgv.3_Missense_Mutation_p.R113C|ALB_uc011cbf.1_Missense_Mutation_p.R324C|ALB_uc010iij.2_Intron|ALB_uc003hgx.3_Missense_Mutation_p.R113C	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	434	Albumin 3.		R -> C (in Liprizzi).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GCTATTAGTTCGTTACACCAA	0.403													56	41					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74352708	74352708	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:74352708G>A	uc003hhb.2	+	5	538	c.507G>A	c.(505-507)AGG>AGA	p.R169R		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	169	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTGCCAGAAGGAACCCATTTG	0.378													15	75					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75937875	75937875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:75937875C>T	uc003hih.1	+	2	524	c.284C>T	c.(283-285)TCG>TTG	p.S95L		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	95	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						AGCCCAGGTTCGAATTGGGAA	0.527													19	102					0	0	1	0	0
USO1	8615	broad.mit.edu	37	4	76730164	76730164	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:76730164A>T	uc003hiu.2	+	20	2610	c.2435A>T	c.(2434-2436)CAG>CTG	p.Q812L	USO1_uc003hiv.2_Missense_Mutation_p.Q654L|USO1_uc003hiw.2_Missense_Mutation_p.Q647L	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	812	Potential.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ACCAAACTACAGACAGAAAAG	0.333													10	9					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76797712	76797712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:76797712C>T	uc003hix.2	-	11	1405	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.E350K	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	350	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GAGCGGCTTTCGGGGAGAAAC	0.587													32	20					0	0	1	0	0
STBD1	8987	broad.mit.edu	37	4	77230699	77230699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:77230699G>A	uc003hka.2	+	2	869	c.623G>A	c.(622-624)AGG>AAG	p.R208K	STBD1_uc003hjy.2_3'UTR|STBD1_uc011cbv.1_3'UTR|STBD1_uc011cbw.1_Missense_Mutation_p.R59K	NM_003943	NP_003934	O95210	STBD1_HUMAN	starch binding domain 1	208	Cytoplasmic (Potential).				carbohydrate metabolic process|muscle contraction	integral to plasma membrane|membrane fraction	carbohydrate binding|catalytic activity|protein binding			ovary(1)	1			Lung(101;0.196)			ATGGTGCCTAGGCACTCATCT	0.498													7	41					0	0	1	0	0
CCDC158	339965	broad.mit.edu	37	4	77247083	77247083	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:77247083T>C	uc003hkb.3	-	22	3237	c.3084A>G	c.(3082-3084)TCA>TCG	p.S1028S		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	1028	Ser-rich.									skin(3)|ovary(2)|pancreas(1)	6						AACCTTCAACTGAACTAGTTA	0.383													105	85					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660517	77660517	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:77660517C>T	uc011cbx.1	+	5	2144	c.1191C>T	c.(1189-1191)CAC>CAT	p.H397H	SHROOM3_uc011cbz.1_Silent_p.H221H|SHROOM3_uc003hkf.1_Silent_p.H272H|SHROOM3_uc003hkg.2_Silent_p.H175H	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	397					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CATTTCGGCACCGTGAGCGGC	0.592													11	44					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817707	77817707	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:77817707C>T	uc003hki.2	-	1	1296	c.1296G>A	c.(1294-1296)AGG>AGA	p.R432R		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	432											0						TGAGCTTCCCCCTATCTGGGG	0.617													77	60					0	0	1	0	0
CNOT6L	246175	broad.mit.edu	37	4	78697514	78697514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:78697514G>A	uc011ccd.1	-	2	169	c.38C>T	c.(37-39)CCT>CTT	p.P13L	CNOT6L_uc003hks.2_Missense_Mutation_p.P13L|CNOT6L_uc011cce.1_Missense_Mutation_p.P13L	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	13					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						AGGATCTGGAGGATCATATTT	0.358													27	45					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79410076	79410076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:79410076G>A	uc003hlb.2	+	59	9240	c.8800G>A	c.(8800-8802)GAG>AAG	p.E2934K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2929	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAAGGAGAAGGAGGGTGTCCT	0.537													11	32					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79410210	79410210	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:79410210G>A	uc003hlb.2	+	59	9374	c.8934G>A	c.(8932-8934)CGG>CGA	p.R2978R		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2973	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACTCTTCACGGATTACATTTC	0.418													21	31					0	0	1	0	0
NAA11	84779	broad.mit.edu	37	4	80246584	80246584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:80246584C>T	uc003hlt.3	-	1	588	c.448G>A	c.(448-450)GAT>AAT	p.D150N		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	150	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						TGCGAGAGATCCCGCTTCATA	0.522													26	41					0	0	1	0	0
FGF5	2250	broad.mit.edu	37	4	81207605	81207605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:81207605G>A	uc003hmd.2	+	3	823	c.586G>A	c.(586-588)GGA>AGA	p.G196R	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	196					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GAATAAAAGAGGAAAAGCCAA	0.468													74	58					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82125844	82125844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:82125844C>T	uc003hmh.2	-	1	372	c.358G>A	c.(358-360)GGA>AGA	p.G120R	PRKG2_uc011cch.1_Missense_Mutation_p.G120R	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	120					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GCCTTTGCTCCCCTCCTGCTA	0.537													174	132					0	0	1	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82380646	82380646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:82380646G>A	uc003hmi.1	-	2	161	c.17C>T	c.(16-18)CCC>CTC	p.P6L	RASGEF1B_uc003hmj.1_Missense_Mutation_p.P6L|RASGEF1B_uc010ijq.1_Missense_Mutation_p.P6L|RASGEF1B_uc003hmk.2_Missense_Mutation_p.P6L	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	6					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						TGCTGAAAAGGGAGGAGTCTG	0.393													29	47					0	0	1	0	0
AGPAT9	84803	broad.mit.edu	37	4	84516094	84516094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:84516094C>T	uc003how.2	+	8	1053	c.835C>T	c.(835-837)CGA>TGA	p.R279*	AGPAT9_uc003hox.2_Nonsense_Mutation_p.R279*|AGPAT9_uc003hoy.2_Nonsense_Mutation_p.R279*	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	279					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				AATGAAGGATCGACACCTGGT	0.478													80	64					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85674877	85674877	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:85674877G>A	uc003hpd.2	-	35	6120	c.5712C>T	c.(5710-5712)CCC>CCT	p.P1904P		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1904						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GAATATTGAAGGGGAAGACGG	0.458													16	58					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85781645	85781645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:85781645C>T	uc003hpd.2	-	4	508	c.100G>A	c.(100-102)GAG>AAG	p.E34K	WDFY3_uc003hpf.2_Missense_Mutation_p.E34K	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	34						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TGGCACAACTCCGTGAAGAGC	0.552													36	82					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88085211	88085211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:88085211G>A	uc011cdb.1	-	9	1943	c.1558C>T	c.(1558-1560)CCT>TCT	p.P520S	KLHL8_uc003hql.1_Missense_Mutation_p.P520S|KLHL8_uc003hqm.1_Missense_Mutation_p.P444S|KLHL8_uc003hqn.1_Missense_Mutation_p.P337S|KLHL8_uc010ikj.1_Missense_Mutation_p.P169S	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	520	Kelch 5.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		GAACTCAGAGGAGAATTATCA	0.383													15	48					0	0	1	0	0
MMRN1	22915	broad.mit.edu	37	4	90874525	90874525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:90874525C>T	uc003hst.2	+	8	3714	c.3643C>T	c.(3643-3645)CCC>TCC	p.P1215S	MMRN1_uc010iku.2_Missense_Mutation_p.P518S|MMRN1_uc011cds.1_Missense_Mutation_p.P957S	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1215	C1q.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		AGCCAAGTTTCCCCCTGTTAC	0.363													30	24					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94145904	94145904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:94145904C>T	uc011cdt.1	+	7	1361	c.1103C>T	c.(1102-1104)TCC>TTC	p.S368F	GRID2_uc011cdu.1_Missense_Mutation_p.S273F|GRID2_uc010ikz.1_Missense_Mutation_p.S49F	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	368	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GGTGGGCGCTCCATGTTGGAG	0.398													5	36					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96761322	96761322	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:96761322C>T	uc003htr.3	+	1	84	c.21C>T	c.(19-21)TCC>TCT	p.S7S		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	7					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CCTTCATCTCCCGCGTGTTGA	0.567													26	19					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100134886	100134886	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:100134886A>C	uc003hup.3	-	3	233	c.139T>G	c.(139-141)TGT>GGT	p.C47G	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.C47G|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.C47G	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	47		Zinc 1; catalytic (By similarity).			ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TCTGTACCACACAGTCCGGTG	0.483													32	70					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100261799	100261799	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:100261799G>A	uc003huu.2	-	9	982	c.897C>T	c.(895-897)TCC>TCT	p.S299S		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	299					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	AGAGGTTCTGGGAATCAGGAG	0.443									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				88	149					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100266210	100266210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:100266210C>T	uc003huu.2	-	7	461	c.376G>A	c.(376-378)GAT>AAT	p.D126N		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	126					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	CTGGTGCCATCCTGCAGGGTC	0.552									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				13	43					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100341729	100341729	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:100341729C>T	uc003huv.1	-	6	921	c.822G>A	c.(820-822)GTG>GTA	p.V274V		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	274					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	AGGTGTATCCCACGTTGTTGC	0.448													11	68					0	0	1	0	0
PPP3CA	5530	broad.mit.edu	37	4	101984452	101984452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:101984452G>A	uc011cen.1	-	9	1693	c.1018C>T	c.(1018-1020)CCA>TCA	p.P340S	PPP3CA_uc003hvu.2_Missense_Mutation_p.P340S|PPP3CA_uc010ilj.2_Intron|PPP3CA_uc003hvt.2_Missense_Mutation_p.P327S|PPP3CA_uc003hvs.2_Missense_Mutation_p.P273S|PPP3CA_uc010ilk.2_Missense_Mutation_p.P108S	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	340					protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		AGCCAGTATGGATGAGGAGAA	0.363													8	36					0	0	1	0	0
BANK1	55024	broad.mit.edu	37	4	102951398	102951398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:102951398G>A	uc003hvy.3	+	10	2150	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K	BANK1_uc003hvx.3_Missense_Mutation_p.E611K|BANK1_uc010ill.2_Missense_Mutation_p.E493K|BANK1_uc003hvz.3_Missense_Mutation_p.E596K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	626					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		TCCAAAAGAGGAAACTACACC	0.398													31	57					0	0	1	0	0
CENPE	1062	broad.mit.edu	37	4	104054052	104054052	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:104054052T>C	uc003hxb.1	-	42	6812	c.6722A>G	c.(6721-6723)GAA>GGA	p.E2241G	CENPE_uc003hxc.1_Missense_Mutation_p.E2120G	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2241	Kinetochore-binding domain.|Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTTGAGAATTTCCTGTGTGAA	0.254													45	87					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104577453	104577453	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:104577453G>A	uc003hxe.1	-	3	929	c.786C>T	c.(784-786)ATC>ATT	p.I262I		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	262	Helical; Name=5; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TAATACCCATGATGAGCAATG	0.373													59	56					0	0	1	0	0
TET2	54790	broad.mit.edu	37	4	106157383	106157383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:106157383C>T	uc003hxk.2	+	3	2670	c.2284C>T	c.(2284-2286)CAC>TAC	p.H762Y	TET2_uc011cez.1_Missense_Mutation_p.H783Y|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.H762Y|TET2_uc003hxi.1_Missense_Mutation_p.H762Y	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	762	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		GACTTTTCCTCACCCCCAAAG	0.383			Mis N|F		MDS								30	18					0	0	1	0	0
TBCK	93627	broad.mit.edu	37	4	107114863	107114863	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:107114863G>A	uc010ilv.2	-	22	2327	c.1962C>T	c.(1960-1962)TTC>TTT	p.F654F	TBCK_uc003hyb.2_Silent_p.F397F|TBCK_uc003hye.2_Silent_p.F615F|TBCK_uc003hyc.2_Silent_p.F591F|TBCK_uc003hyd.2_Silent_p.F482F|TBCK_uc003hyf.2_Silent_p.F654F	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	654						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						TACAGAATGGGAAAGAGGAAT	0.368													10	64					0	0	1	0	0
AIMP1	9255	broad.mit.edu	37	4	107258161	107258161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:107258161C>T	uc011cfg.1	+	6	791	c.739C>T	c.(739-741)CCT>TCT	p.P247S	AIMP1_uc003hyg.2_Missense_Mutation_p.P247S|AIMP1_uc003hyh.2_Missense_Mutation_p.P271S	NM_001142415	NP_001135887	Q12904	AIMP1_HUMAN	small inducible cytokine subfamily E, member 1	247	tRNA-binding.				angiogenesis|apoptosis|cell adhesion|cell-cell signaling|chemotaxis|glucose metabolic process|inflammatory response|leukocyte migration|negative regulation of endothelial cell proliferation|signal transduction|tRNA aminoacylation for protein translation	aminoacyl-tRNA synthetase multienzyme complex|cytosol|endoplasmic reticulum|extracellular space|Golgi apparatus|nucleus|transport vesicle	cell surface binding|cytokine activity|protein homodimerization activity|tRNA binding				0						TGGGTCTGTTCCTGGAGACAG	0.383													51	84					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107845189	107845189	+	Silent	SNP	C	T	T	rs61757610		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:107845189C>T	uc003hyi.2	-	4	1407	c.702G>A	c.(700-702)GCG>GCA	p.A234A	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	234	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		ACAGGCCCTTCGCACAGTCGC	0.483													21	121					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107845751	107845751	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:107845751C>T	uc003hyi.2	-	3	1185	c.480G>A	c.(478-480)TTG>TTA	p.L160L	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Silent_p.L160L	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	160					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		TCTGCCATCCCAAGTCATGGT	0.423													12	97					0	0	1	0	0
CCDC109B	55013	broad.mit.edu	37	4	110605797	110605797	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:110605797C>T	uc011cfs.1	+	6	950	c.811C>T	c.(811-813)CGA>TGA	p.R271*		NM_017918	NP_060388	Q9NWR8	C109B_HUMAN	coiled-coil domain containing 109B	271						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;6.65e-06)		TATAGTCACTCGACAGGTGAG	0.368													30	38					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110880475	110880475	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:110880475A>G	uc003hzy.3	+	6	1400	c.948A>G	c.(946-948)AAA>AAG	p.K316K	EGF_uc011cfu.1_Intron|EGF_uc011cfv.1_Silent_p.K316K	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	316	EGF-like 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TAGAGCAGAAACTTTGCAAAT	0.473													27	15					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110880495	110880495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:110880495G>A	uc003hzy.3	+	6	1420	c.968G>A	c.(967-969)GGA>GAA	p.G323E	EGF_uc011cfu.1_Intron|EGF_uc011cfv.1_Missense_Mutation_p.G323E	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	323	EGF-like 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TTGAGGAAAGGAAACTGCAGC	0.473													14	34					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111431408	111431408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:111431408G>A	uc003iab.3	+	6	1544	c.1202G>A	c.(1201-1203)GGA>GAA	p.G401E		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	401	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CAGTGGTTTGGAAATATTGTG	0.378													11	46					0	0	1	0	0
LARP7	51574	broad.mit.edu	37	4	113567957	113567957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:113567957C>T	uc003iay.2	+	5	676	c.398C>T	c.(397-399)CCC>CTC	p.P133L	LARP7_uc003iaz.2_Missense_Mutation_p.P140L|LARP7_uc003iba.2_Missense_Mutation_p.P54L|LARP7_uc003ibb.2_Missense_Mutation_p.P133L	NM_016648	NP_057732	Q4G0J3	LARP7_HUMAN	La ribonucleoprotein domain family, member 7	133	RRM.				RNA processing	nucleoplasm|ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(3)	3		Ovarian(17;0.0443)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		GAGTTACTTCCCAAAAATGTT	0.289													41	47					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114117600	114117600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:114117600C>T	uc003ibe.3	+	3	363	c.263C>T	c.(262-264)TCC>TTC	p.S88F	ANK2_uc003ibd.3_Missense_Mutation_p.S67F|ANK2_uc003ibf.3_Missense_Mutation_p.S88F|ANK2_uc003ibc.2_Missense_Mutation_p.S64F|ANK2_uc011cgb.1_Missense_Mutation_p.S103F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	88	ANK 2.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GGAAGAGGGTCCTCTGTGGAT	0.418													11	59					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114277387	114277387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:114277387C>T	uc003ibe.3	+	38	7713	c.7613C>T	c.(7612-7614)CCT>CTT	p.P2538L	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.P2553L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2505					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCCCTTTCTCCTGACACCCCC	0.537													26	131					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114279695	114279695	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:114279695G>A	uc003ibe.3	+	38	10021	c.9921G>A	c.(9919-9921)AGG>AGA	p.R3307R	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Silent_p.R609R|ANK2_uc011cgb.1_Silent_p.R3322R	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3274					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TTCCTGTAAGGACTATGCCCA	0.443													23	100					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114288854	114288854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:114288854C>T	uc003ibe.3	+	42	11265	c.11165C>T	c.(11164-11166)TCC>TTC	p.S3722F	ANK2_uc003ibd.3_Missense_Mutation_p.S1628F|ANK2_uc003ibf.3_Missense_Mutation_p.S1637F|ANK2_uc011cgc.1_Missense_Mutation_p.S813F|ANK2_uc003ibg.3_Missense_Mutation_p.S621F|ANK2_uc003ibh.3_Missense_Mutation_p.S311F|ANK2_uc011cgd.1_Missense_Mutation_p.S1024F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3689					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GTTGGTTATTCCACTTTTCAG	0.493													49	46					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115767064	115767064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:115767064G>A	uc003ibu.2	-	10	2709	c.2030C>T	c.(2029-2031)CCA>CTA	p.P677L	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	677	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGCTCGTCTTGGAGCTTCTTC	0.453													59	45					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115769380	115769380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:115769380C>T	uc003ibu.2	-	9	2610	c.1931G>A	c.(1930-1932)GGA>GAA	p.G644E	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	644	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CCAGTCTATTCCTTTGTGATA	0.333													16	56					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115891693	115891693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:115891693C>T	uc003ibu.2	-	4	1793	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	372	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CAGAACTCATCCACAGACCGA	0.393													4	41					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119035961	119035961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:119035961G>A	uc003ibx.2	+	4	1473	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	NDST3_uc011cgf.1_Intron	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	357	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CCCCCTAAAGGAACTGAAGAG	0.403													9	46					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119174748	119174748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:119174748G>A	uc003ibx.2	+	13	2897	c.2494G>A	c.(2494-2496)GAT>AAT	p.D832N		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	832	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CCCTCCAATGGATTCTGATGT	0.313													62	44					0	0	1	0	0
PRSS12	8492	broad.mit.edu	37	4	119234529	119234529	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:119234529T>C	uc003ica.1	-	7	1363	c.1316A>G	c.(1315-1317)AAC>AGC	p.N439S		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	439	SRCR 3.					membrane	scavenger receptor activity			skin(1)	1						TTCAAAATGGTTGGCAGATGC	0.443													45	31					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948548	119948548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:119948548G>A	uc003icm.3	+	3	1220	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	SYNPO2_uc010ina.2_Missense_Mutation_p.E342K|SYNPO2_uc010inb.2_Missense_Mutation_p.E342K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.E270K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	342						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCCACGCTCGGAAAAAGATCA	0.562													27	21					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952058	119952058	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:119952058C>G	uc003icm.3	+	4	2324	c.2128C>G	c.(2128-2130)CTC>GTC	p.L710V	SYNPO2_uc010ina.2_Missense_Mutation_p.L710V|SYNPO2_uc010inb.2_Missense_Mutation_p.L710V|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.L638V	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	710						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AAATCCTGAACTCTTGTCACT	0.493													22	36					0	0	1	0	0
MYOZ2	51778	broad.mit.edu	37	4	120079232	120079232	+	Missense_Mutation	SNP	C	T	T	rs138061447		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:120079232C>T	uc003icp.3	+	4	515	c.302C>T	c.(301-303)TCG>TTG	p.S101L		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	101							protein phosphatase 2B binding				0						GAAGGTGGTTCGCAGCAAGCC	0.463													59	48					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958354	121958354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:121958354G>A	uc003idq.1	-	4	1299	c.772C>T	c.(772-774)CCT>TCT	p.P258S		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	258											0						TTATCAGAAGGAAATCCAAAG	0.468													27	41					0	0	1	0	0
QRFPR	84109	broad.mit.edu	37	4	122257993	122257993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:122257993C>T	uc010inj.1	-	3	909	c.530G>A	c.(529-531)GGA>GAA	p.G177E	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_Missense_Mutation_p.G177E	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	177	Helical; Name=4; (Potential).					plasma membrane	neuropeptide Y receptor activity				0						CATGGGTGATCCTACGATGAC	0.393													37	239					0	0	1	0	0
BBS7	55212	broad.mit.edu	37	4	122766756	122766756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:122766756G>A	uc003ied.2	-	11	1307	c.1133C>T	c.(1132-1134)TCC>TTC	p.S378F	BBS7_uc003iee.1_Missense_Mutation_p.S378F	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	378					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						TATACCAAAGGAAGGTACTGC	0.348									Bardet-Biedl_syndrome				20	61					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123336679	123336679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:123336679G>A	uc003ieo.2	+	11	1627	c.1395G>A	c.(1393-1395)ATG>ATA	p.M465I	ADAD1_uc003iep.2_Missense_Mutation_p.M454I|ADAD1_uc003ieq.2_Missense_Mutation_p.M447I	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	465	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						CCCTTCAAATGAACTTGGAAT	0.388													50	111					0	0	1	0	0
SPATA5	166378	broad.mit.edu	37	4	123859365	123859365	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:123859365T>C	uc003iez.3	+	8	1492	c.1419T>C	c.(1417-1419)GTT>GTC	p.V473V	SPATA5_uc003iey.2_Silent_p.V472V	NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	473					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						AAAAAAGAGTTGTGGCTTCAC	0.383													22	122					0	0	1	0	0
SPRY1	10252	broad.mit.edu	37	4	124323620	124323620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:124323620C>T	uc003ifa.2	+	2	1062	c.874C>T	c.(874-876)CGC>TGC	p.R292C	SPRY1_uc003ifb.2_Missense_Mutation_p.R292C	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	292	Cys-rich.|SPR.				epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						CTGGATCCATCGCCCAGGGTG	0.498													24	113					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126369770	126369770	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126369770A>G	uc003ifj.3	+	9	7599	c.7599A>G	c.(7597-7599)GAA>GAG	p.E2533E	FAT4_uc011cgp.1_Silent_p.E831E|FAT4_uc003ifi.1_Silent_p.E11E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2533	Extracellular (Potential).|Cadherin 24.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAGCTTCAGAAGTGACATTTT	0.428													45	28					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126370110	126370110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126370110C>T	uc003ifj.3	+	9	7939	c.7939C>T	c.(7939-7941)CCT>TCT	p.P2647S	FAT4_uc011cgp.1_Missense_Mutation_p.P945S|FAT4_uc003ifi.1_Missense_Mutation_p.P125S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2647	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						cggtggtttccctcctttctC	0.144													26	28					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126371727	126371727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126371727G>A	uc003ifj.3	+	9	9556	c.9556G>A	c.(9556-9558)GAT>AAT	p.D3186N	FAT4_uc011cgp.1_Missense_Mutation_p.D1484N|FAT4_uc003ifi.1_Missense_Mutation_p.D664N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3186	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAATGTGATTGATGTGAATGA	0.408													16	65					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126371903	126371903	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126371903C>T	uc003ifj.3	+	9	9732	c.9732C>T	c.(9730-9732)GAC>GAT	p.D3244D	FAT4_uc011cgp.1_Silent_p.D1542D|FAT4_uc003ifi.1_Silent_p.D722D	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3244	Cadherin 31.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTGTCATTGACCCTAACACAG	0.438													37	37					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372884	126372884	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126372884G>A	uc003ifj.3	+	9	10713	c.10713G>A	c.(10711-10713)GAG>GAA	p.E3571E	FAT4_uc011cgp.1_Silent_p.E1869E|FAT4_uc003ifi.1_Silent_p.E1049E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3571	Cadherin 34.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAACCAGAGAGATTGACAGAG	0.458													31	140					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373957	126373957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126373957G>A	uc003ifj.3	+	9	11786	c.11786G>A	c.(11785-11787)GGA>GAA	p.G3929E	FAT4_uc011cgp.1_Missense_Mutation_p.G2227E|FAT4_uc003ifi.1_Missense_Mutation_p.G1407E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3929	EGF-like 3; calcium-binding (Potential).|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCAAAACTGGATACACAGGT	0.383													54	39					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411518	126411518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126411518C>T	uc003ifj.3	+	17	13541	c.13541C>T	c.(13540-13542)ACC>ATC	p.T4514I	FAT4_uc011cgp.1_Missense_Mutation_p.T2755I|FAT4_uc003ifi.1_Missense_Mutation_p.T1991I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4514	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGCTGCGCAACCGTCTTGGCC	0.572													49	42					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411586	126411586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:126411586C>T	uc003ifj.3	+	17	13609	c.13609C>T	c.(13609-13611)CCC>TCC	p.P4537S	FAT4_uc011cgp.1_Missense_Mutation_p.P2778S|FAT4_uc003ifi.1_Missense_Mutation_p.P2014S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4537	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGCCAAAAATCCCAAAGAGGA	0.532													13	68					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452388	138452388	+	Silent	SNP	G	A	A	rs62330470		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:138452388G>A	uc003ihe.3	-	1	1242	c.855C>T	c.(853-855)TTC>TTT	p.F285F	PCDH18_uc003ihf.3_Silent_p.F278F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.F65F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	285	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CATGACTGCTGAAGGAATATA	0.388													30	32					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452587	138452587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:138452587G>A	uc003ihe.3	-	1	1043	c.656C>T	c.(655-657)TCA>TTA	p.S219L	PCDH18_uc003ihf.3_Missense_Mutation_p.S212L|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	219	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCCCATGTCTGAGGCAGTGAG	0.473													39	34					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141317036	141317036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:141317036C>T	uc011chi.1	-	11	1304	c.1086G>A	c.(1084-1086)ATG>ATA	p.M362I	CLGN_uc003iii.2_Missense_Mutation_p.M362I	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	362	Lumenal (Potential).|2-2.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					GGTTATCTATCATGGGAGGTT	0.423													21	55					0	0	1	0	0
GYPA	2993	broad.mit.edu	37	4	144918699	144918699	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:144918699C>T	uc003ijn.2	-	5	476	c.360G>A	c.(358-360)CTG>CTA	p.L120L	GYPB_uc011chs.1_Intron|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_Intron|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_Intron|GYPB_uc011chx.1_RNA|GYPB_uc003ijm.1_Silent_p.L88L|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA			P02724	GLPA_HUMAN	SubName: Full=Glycophorin MiX; Flags: Fragment;	117	Cytoplasmic.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					TCACCTTTATCAGTCGGCGAA	0.368													5	37					0	0	1	0	0
GYPB	2994	broad.mit.edu	37	4	144920579	144920579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:144920579G>A	uc003ijm.1	-	3	216	c.160C>T	c.(160-162)CGT>TGT	p.R54C	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_RNA|GYPB_uc011chx.1_Intron|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	54	Extracellular (Potential).		R -> H (in Mit antigen).			integral to plasma membrane					0	all_hematologic(180;0.158)					ACAGTGAAACGATGGACAAGT	0.313													12	10					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146697106	146697106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:146697106C>T	uc003ikn.2	-	10	2576	c.2528G>A	c.(2527-2529)AGA>AAA	p.R843K	ZNF827_uc003ikm.2_Missense_Mutation_p.R843K|ZNF827_uc010iox.2_Missense_Mutation_p.R493K|ZNF827_uc003ikl.2_5'UTR	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	843					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TTTGTATTTTCTTTCCTCTGG	0.463													37	46					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146807040	146807040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:146807040C>T	uc003ikn.2	-	4	1585	c.1537G>A	c.(1537-1539)GGA>AGA	p.G513R	ZNF827_uc003ikm.2_Missense_Mutation_p.G513R|ZNF827_uc010iox.2_Missense_Mutation_p.G163R	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	513					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CCAGCCCCTCCCTGGCTAGTC	0.597													18	86					0	0	1	0	0
SLC10A7	84068	broad.mit.edu	37	4	147179970	147179970	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:147179970G>A	uc010ioz.2	-	11	1121	c.867C>T	c.(865-867)ATC>ATT	p.I289I	SLC10A7_uc003ikr.2_Silent_p.I289I|SLC10A7_uc010ipa.2_Silent_p.I276I|SLC10A7_uc003iks.2_RNA	NM_001029998	NP_001025169	Q0GE19	NTCP7_HUMAN	solute carrier family 10 (sodium/bile acid	289	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity				0	all_hematologic(180;0.151)					CTGCAAACACGATCTTCAGCA	0.418													29	23					0	0	1	0	0
TTC29	83894	broad.mit.edu	37	4	147741282	147741282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:147741282C>T	uc003ikw.3	-	10	1323	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.E392K|TTC29_uc010ipd.1_Missense_Mutation_p.E366K	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	366	TPR 5.						binding				0	all_hematologic(180;0.151)					CTCACTTTTTCATTGTAGATG	0.328													28	105					0	0	1	0	0
PRSS48	345062	broad.mit.edu	37	4	152212279	152212279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:152212279G>A	uc011cif.1	+	5	661	c.661G>A	c.(661-663)GGA>AGA	p.G221R	PRSS48_uc011cig.1_Missense_Mutation_p.G78R	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	221	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GGGTGATTCTGGAGGGCCTCT	0.433													9	62					0	0	1	0	0
FBXW7	55294	broad.mit.edu	37	4	153249511	153249511	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:153249511C>A	uc003ims.2	-	9	1416	c.1267G>T	c.(1267-1269)GGA>TGA	p.G423*	FBXW7_uc011cii.1_Nonsense_Mutation_p.G423*|FBXW7_uc003imt.2_Nonsense_Mutation_p.G423*|FBXW7_uc011cih.1_Nonsense_Mutation_p.G247*|FBXW7_uc003imq.2_Nonsense_Mutation_p.G343*|FBXW7_uc003imr.2_Nonsense_Mutation_p.G305*	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	423	WD 2.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.G423V(4)|p.G423R(1)|p.G343R(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GACCATACTCCACCTGTATGT	0.373			Mis|N|D|F		colorectal|endometrial|T-ALL								89	87					2.75442e-36	2.7951e-36	1	1	0
FHDC1	85462	broad.mit.edu	37	4	153864376	153864376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:153864376C>T	uc003inf.2	+	1	242	c.167C>T	c.(166-168)TCC>TTC	p.S56F		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	56					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GAGTGTCCTTCCTCCCCTCCT	0.463													3	17					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155156308	155156308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155156308C>T	uc003inw.2	-	25	8131	c.8131G>A	c.(8131-8133)GAA>AAA	p.E2711K		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2711					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGATCTCCTTCCCCAAATGTT	0.532													29	50					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155241618	155241618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155241618C>T	uc003inw.2	-	14	3568	c.3568G>A	c.(3568-3570)GAT>AAT	p.D1190N		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1190	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCGTCTGGATCGTGAGCAGTT	0.453													72	122					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155287521	155287521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155287521G>A	uc003inw.2	-	5	535	c.535C>T	c.(535-537)CCA>TCA	p.P179S	DCHS2_uc003inx.2_Missense_Mutation_p.P773S	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	179	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TAGGTTGATGGGTTAAACACA	0.498													22	14					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155506938	155506938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155506938C>T	uc003iod.1	-	5	1701	c.1643G>A	c.(1642-1644)GGC>GAC	p.G548D	FGA_uc003ioe.1_Missense_Mutation_p.G548D|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	548	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGATTCTGAGCCCCTAGACTC	0.453													51	51					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507202	155507202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155507202G>A	uc003iod.1	-	5	1437	c.1379C>T	c.(1378-1380)TCA>TTA	p.S460L	FGA_uc003ioe.1_Missense_Mutation_p.S460L|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	460	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TTTAGAGCATGAACGACGCGT	0.468													136	129					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155719082	155719082	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:155719082C>T	uc003ioo.2	+	3	444	c.271C>T	c.(271-273)CGA>TGA	p.R91*	RBM46_uc011cim.1_Nonsense_Mutation_p.R91*|RBM46_uc003iop.1_Nonsense_Mutation_p.R91*	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	91	RRM 1.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				ATATGAATTTCGACTTATGAT	0.343													34	30					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135713	156135713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:156135713C>T	uc003ioq.2	+	2	1117	c.622C>T	c.(622-624)CCT>TCT	p.P208S	NPY2R_uc003ior.2_Missense_Mutation_p.P208S	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	208	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TGAAAAGTGGCCTGGCGAGGA	0.488													98	88					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156136012	156136012	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:156136012C>T	uc003ioq.2	+	2	1416	c.921C>T	c.(919-921)TTC>TTT	p.F307F	NPY2R_uc003ior.2_Silent_p.F307F	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	307	Helical; Name=7; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				AACTCATCTTCACAGTGTTCC	0.532													26	51					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632156	156632156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:156632156C>T	uc003iov.2	+	7	1375	c.839C>T	c.(838-840)TCG>TTG	p.S280L	GUCY1A3_uc003iou.2_Missense_Mutation_p.S280L|GUCY1A3_uc010iqc.2_Missense_Mutation_p.S280L|GUCY1A3_uc003iow.2_Missense_Mutation_p.S280L|GUCY1A3_uc010iqd.2_Missense_Mutation_p.S279L|GUCY1A3_uc003iox.2_Missense_Mutation_p.S280L|GUCY1A3_uc003ioz.2_Missense_Mutation_p.S45L|GUCY1A3_uc003ioy.2_Missense_Mutation_p.S280L|GUCY1A3_uc010iqe.2_Missense_Mutation_p.S45L|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.S280L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	280					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ATTCCCACATCGCTATTCTGC	0.463													16	84					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632249	156632249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:156632249G>A	uc003iov.2	+	7	1468	c.932G>A	c.(931-933)AGG>AAG	p.R311K	GUCY1A3_uc003iou.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqc.2_Missense_Mutation_p.R311K|GUCY1A3_uc003iow.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqd.2_Missense_Mutation_p.R310K|GUCY1A3_uc003iox.2_Missense_Mutation_p.R311K|GUCY1A3_uc003ioz.2_Missense_Mutation_p.R76K|GUCY1A3_uc003ioy.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqe.2_Missense_Mutation_p.R76K|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.R311K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	311					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTGATGAACAGGAGAGACTTT	0.383													17	38					0	0	1	0	0
PDGFC	56034	broad.mit.edu	37	4	157732033	157732033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:157732033G>A	uc003iph.1	-	3	942	c.451C>T	c.(451-453)CCT>TCT	p.P151S	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_5'UTR|PDGFC_uc011cir.1_Intron	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	151	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GGTTCAGAAGGAAAATATTCA	0.368													31	30					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158064987	158064987	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:158064987C>T	uc003ipj.2	+	8	982	c.780C>T	c.(778-780)TTC>TTT	p.F260F		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	260	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AAGTCATCTTCACCCTGAGGA	0.502													14	22					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158073936	158073936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:158073936C>T	uc003ipj.2	+	9	1173	c.971C>T	c.(970-972)TCC>TTC	p.S324F		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	324					nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	CCCAAAGTTTCCTATGTGAAG	0.483													64	59					0	0	1	0	0
GRIA2	2891	broad.mit.edu	37	4	158262476	158262476	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:158262476C>T	uc003ipm.3	+	12	2364	c.1905C>T	c.(1903-1905)TCC>TCT	p.S635S	GRIA2_uc011cit.1_Silent_p.S588S|GRIA2_uc003ipl.3_Silent_p.S635S|GRIA2_uc003ipk.3_Silent_p.S588S|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	635	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TCATAATCTCCTCCTACACGG	0.433													81	83					0	0	1	0	0
TMEM144	55314	broad.mit.edu	37	4	159154117	159154118	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:159154117_159154118CC>TT	uc003ipx.2	+	7	998_999	c.478_479CC>TT	c.(478-480)CCA>TTA	p.P160L	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	160						integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		GGATACCACTCCATTAATAACA	0.267													6	36					0	0	1	0	0
FNIP2	57600	broad.mit.edu	37	4	159812771	159812771	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:159812771C>T	uc003iqe.3	+	15	3306	c.3123C>T	c.(3121-3123)CTC>CTT	p.L1041L		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	1041					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		TTTTACAGCTCTATAAGCTTC	0.383													12	19					0	0	1	0	0
C4orf45	152940	broad.mit.edu	37	4	159836327	159836327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:159836327C>T	uc003iqf.1	-	4	626	c.541G>A	c.(541-543)GAA>AAA	p.E181K	C4orf45_uc010iqt.1_RNA	NM_152543	NP_689756	Q96LM5	CD045_HUMAN	hypothetical protein LOC152940	181											0						CATACCTTTTCCTTTTTTGGT	0.373													16	10					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160268102	160268102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:160268102C>T	uc003iqg.3	+	19	3491	c.3181C>T	c.(3181-3183)CTT>TTT	p.L1061F		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1061					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		CGCCGTGTCCCTTTATCCTTC	0.502													76	50					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160277270	160277270	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:160277270C>T	uc003iqg.3	+	23	4744	c.4434C>T	c.(4432-4434)CTC>CTT	p.L1478L		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1478					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		ACCCGCGCCTCGCCCCCTATC	0.532													12	43					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164246629	164246629	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:164246629G>A	uc003iqm.1	-	3	1247	c.981C>T	c.(979-981)TTC>TTT	p.F327F	NPY1R_uc011cjj.1_Silent_p.F84F	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	327	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGTCTCTCTGGAAGTTTTTGT	0.433													48	58					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164246675	164246675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:164246675G>A	uc003iqm.1	-	3	1201	c.935C>T	c.(934-936)TCC>TTC	p.S312F	NPY1R_uc011cjj.1_Missense_Mutation_p.S69F	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	312	Helical; Name=7; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GACACAAGTGGATATCATTGC	0.418													42	54					0	0	1	0	0
TRIM60	166655	broad.mit.edu	37	4	165962281	165962281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:165962281G>A	uc003iqy.1	+	3	1227	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	TRIM60_uc010iqx.1_Missense_Mutation_p.E353K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	353	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		ACATTACTGGGAAGTAGAAGT	0.443													18	83					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166910643	166910643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:166910643G>A	uc003irh.1	+	2	927	c.280G>A	c.(280-282)GGT>AGT	p.G94S	TLL1_uc011cjn.1_Missense_Mutation_p.G94S|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	94					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ACATACCACAGGTATGGTTGA	0.343													62	66					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166963247	166963247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:166963247C>T	uc003irh.1	+	11	1977	c.1330C>T	c.(1330-1332)CGT>TGT	p.R444C	TLL1_uc011cjn.1_Missense_Mutation_p.R444C|TLL1_uc011cjo.1_Missense_Mutation_p.R268C	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	444	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GATTGAGTTTCGTAGCAGCAG	0.368													43	44					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	167021975	167021975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:167021975C>T	uc003irh.1	+	21	3636	c.2989C>T	c.(2989-2991)CAT>TAT	p.H997Y	TLL1_uc011cjn.1_Missense_Mutation_p.H1020Y|TLL1_uc011cjo.1_Missense_Mutation_p.H821Y	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	997	CUB 5.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAAGGGATTTCATATAAGATA	0.343													30	53					0	0	1	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656164	167656164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:167656164C>T	uc003iri.1	-	12	1360	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D364N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D416N|SPOCK3_uc011cjr.1_Missense_Mutation_p.D287N|SPOCK3_uc003irj.1_Missense_Mutation_p.D404N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D356N|SPOCK3_uc011cjt.1_Missense_Mutation_p.D315N|SPOCK3_uc011cju.1_Missense_Mutation_p.D300N|SPOCK3_uc011cjv.1_Missense_Mutation_p.D309N	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	407	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		ttcataatatcgtcttcatca	0.075													7	45					0	0	1	0	0
SPOCK3	50859	broad.mit.edu	37	4	167921597	167921597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:167921597C>T	uc003iri.1	-	5	403	c.262G>A	c.(262-264)GAT>AAT	p.D88N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D85N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D97N|SPOCK3_uc011cjr.1_Intron|SPOCK3_uc003irj.1_Missense_Mutation_p.D85N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D37N|SPOCK3_uc011cjt.1_5'UTR|SPOCK3_uc011cju.1_Intron|SPOCK3_uc011cjv.1_Intron|SPOCK3_uc003irk.3_Missense_Mutation_p.D85N|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	88					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		AAGCATGGATCCTTAGCTGGA	0.368													47	28					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169194513	169194513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:169194513G>A	uc003irp.2	-	18	2783	c.2491C>T	c.(2491-2493)CGT>TGT	p.R831C		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	831	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTCGTAAAACGATTCTGAACA	0.393													11	32					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169227849	169227849	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:169227849T>A	uc003irp.2	-	5	579	c.287A>T	c.(286-288)AAC>ATC	p.N96I		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	96							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTCAGGGAAGTTGAAATACGC	0.348													26	35					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169312711	169312711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:169312711C>T	uc003irq.3	-	29	4116	c.3895G>A	c.(3895-3897)GAT>AAT	p.D1299N	DDX60L_uc003irr.1_Missense_Mutation_p.D1300N	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1299	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TTTAAAGCATCCAGATAGACT	0.403													9	6					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169321985	169321985	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:169321985C>T	uc003irq.3	-	26	3704	c.3483G>A	c.(3481-3483)CAG>CAA	p.Q1161Q	DDX60L_uc003irr.1_Silent_p.Q1161Q|DDX60L_uc003irs.1_Silent_p.Q856Q	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1161							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		ACATCCTTTTCTGTGTCTTCC	0.363													5	36					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537323	174537323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:174537323G>A	uc011cke.1	-	1	472	c.472C>T	c.(472-474)CTT>TTT	p.L158F		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		CAATCTGCAAGAATTTCGGCA	0.448													81	130					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177041242	177041242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:177041242C>T	uc003iuj.2	+	5	760	c.604C>T	c.(604-606)CAT>TAT	p.H202Y	WDR17_uc003iuk.2_Missense_Mutation_p.H178Y|WDR17_uc003ium.3_Missense_Mutation_p.H178Y|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	202	WD 3.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATCAATTTTTCATCCAGGTAA	0.264													15	86					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177100687	177100687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:177100687C>T	uc003iuj.2	+	31	4082	c.3926C>T	c.(3925-3927)CCA>CTA	p.P1309L	WDR17_uc003iuk.2_Missense_Mutation_p.P1285L|WDR17_uc003ium.3_Missense_Mutation_p.P1270L|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.P520L	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	1309										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		AAGGTGAATCCATTCTCACCT	0.398													47	42					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183651392	183651392	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:183651392T>A	uc003ivd.1	+	14	2662	c.2625T>A	c.(2623-2625)GAT>GAA	p.D875E	ODZ3_uc003ive.1_Missense_Mutation_p.D281E	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	875	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TGACTGCTGATGGAACTCCAC	0.428													55	50					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183675765	183675765	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:183675765C>T	uc003ivd.1	+	21	4282	c.4245C>T	c.(4243-4245)GTC>GTT	p.V1415V	ODZ3_uc003ive.1_Silent_p.V828V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1415	Extracellular (Potential).|NHL 4.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACAGTGGGGTCCTGTACATTA	0.502													11	30					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183713767	183713767	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:183713767A>G	uc003ivd.1	+	25	5979	c.5942A>G	c.(5941-5943)AAC>AGC	p.N1981S		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1981	Extracellular (Potential).|YD 11.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AAGACAGTAAACCTCCAGAGT	0.398													119	192					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183714115	183714115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:183714115C>T	uc003ivd.1	+	25	6327	c.6290C>T	c.(6289-6291)TCG>TTG	p.S2097L		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2097	YD 16.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATATTCAGGTCGCTCATGTAC	0.393													10	21					0	0	1	0	0
C4orf41	60684	broad.mit.edu	37	4	184622904	184622904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:184622904C>T	uc003ivx.2	+	26	3082	c.2906C>T	c.(2905-2907)TCT>TTT	p.S969F	C4orf41_uc003ivw.2_Missense_Mutation_p.S969F|C4orf41_uc010isc.2_Missense_Mutation_p.S313F|C4orf41_uc003ivy.2_Missense_Mutation_p.S575F	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	969											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		CAATGCCCATCTCTTGGAAAT	0.373													29	27					0	0	1	0	0
STOX2	56977	broad.mit.edu	37	4	184932422	184932422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:184932422G>A	uc003ivz.1	+	3	3866	c.2431G>A	c.(2431-2433)GAA>AAA	p.E811K	STOX2_uc003iwa.1_Missense_Mutation_p.E500K	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	811					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		GCGGGAGAAGGAAAGAGACTT	0.517													7	23					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185138772	185138772	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:185138772G>A	uc003iwc.2	-	1	343	c.201C>T	c.(199-201)TTC>TTT	p.F67F		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	67	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		AGAGACTAGGGAAGTCTGGAG	0.502													28	61					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186544688	186544688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:186544688G>A	uc003iyl.2	-	13	2741	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.S728F|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.S532F|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.S742F|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	628						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GGATGTGAAGGAAAAGTGATC	0.408													17	33					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186551710	186551710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:186551710G>A	uc003iyl.2	-	11	1585	c.727C>T	c.(727-729)CCC>TCC	p.P243S	SORBS2_uc003iyh.2_Missense_Mutation_p.P494S|SORBS2_uc011ckw.1_Missense_Mutation_p.P331S|SORBS2_uc003iyi.2_Missense_Mutation_p.P401S|SORBS2_uc011ckx.1_Missense_Mutation_p.P336S|SORBS2_uc003iyk.2_Missense_Mutation_p.P314S|SORBS2_uc003iym.2_Missense_Mutation_p.P343S|SORBS2_uc003iyn.1_Missense_Mutation_p.P361S|SORBS2_uc011cky.1_Missense_Mutation_p.P306S|SORBS2_uc011cku.1_Missense_Mutation_p.P162S|SORBS2_uc011ckv.1_Missense_Mutation_p.P147S|SORBS2_uc003iyd.2_Missense_Mutation_p.P469S|SORBS2_uc003iye.2_Missense_Mutation_p.P343S|SORBS2_uc003iya.2_Missense_Mutation_p.P290S|SORBS2_uc003iyb.2_Missense_Mutation_p.P243S|SORBS2_uc003iyc.2_Missense_Mutation_p.P223S|SORBS2_uc003iyg.2_Missense_Mutation_p.P357S|SORBS2_uc003iyf.2_Missense_Mutation_p.P306S|SORBS2_uc003iyo.1_Missense_Mutation_p.P219S	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	243						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TACCTCATGGGTCTTTCCAGG	0.338													15	20					0	0	1	0	0
F11	2160	broad.mit.edu	37	4	187201727	187201727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:187201727G>A	uc003iza.1	+	10	1461	c.1128G>A	c.(1126-1128)ATG>ATA	p.M376I		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	376					blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	TGTGTAAAATGGATAATGGTG	0.383													6	28					0	0	1	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455581	187455581	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:187455581G>A	uc003izd.1	-	2	333	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	105	Helical; Name=3; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GGCCCATCAGGAACCCACTGA	0.532													26	58					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187524571	187524571	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:187524571A>C	uc003izf.2	-	19	11297	c.11109T>G	c.(11107-11109)AGT>AGG	p.S3703R		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3703	Extracellular (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGATCTGAGCACTACCTGGTT	0.428										HNSCC(5;0.00058)			13	46					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924775	188924775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:188924775G>A	uc003izg.1	+	3	1059	c.814G>A	c.(814-816)GAG>AAG	p.E272K	ZFP42_uc003izh.1_Missense_Mutation_p.E272K|ZFP42_uc003izi.1_Missense_Mutation_p.E272K	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	272					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		CCACACGGGGGAGAAACGTTT	0.488													16	47					0	0	1	0	0
EXOC3	11336	broad.mit.edu	37	5	453731	453731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:453731G>A	uc003jba.2	+	4	739	c.611G>A	c.(610-612)CGT>CAT	p.R204H		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	215					exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			ACTGTCCGCCGTGACCCCACC	0.537													17	88					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1214132	1214132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:1214132C>T	uc003jbw.3	+	6	895	c.839C>T	c.(838-840)TCC>TTC	p.S280F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	280	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTCTCCTTCTCCCTGGCCTTC	0.642													59	34					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1216767	1216767	+	Missense_Mutation	SNP	C	T	T	rs142164435	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:1216767C>T	uc003jbw.3	+	7	1038	c.982C>T	c.(982-984)CGC>TGC	p.R328C		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	328	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CATTGGGTTCCGCGCCACACA	0.602													11	45					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1254578	1254578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:1254578G>A	uc003jcb.1	-	15	3258	c.3200C>T	c.(3199-3201)TCC>TTC	p.S1067F	TERT_uc003jbz.1_Missense_Mutation_p.S263F|TERT_uc003jca.1_Missense_Mutation_p.S1055F|TERT_uc003jcc.1_Missense_Mutation_p.S1004F|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1067	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CACGGCCTCGGAGGGCAGAGG	0.667									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				32	17					0	0	1	0	0
TERT	7015	broad.mit.edu	37	5	1254580	1254580	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:1254580G>A	uc003jcb.1	-	15	3256	c.3198C>T	c.(3196-3198)CCC>CCT	p.P1066P	TERT_uc003jbz.1_Silent_p.P262P|TERT_uc003jca.1_Silent_p.P1054P|TERT_uc003jcc.1_Silent_p.P1003P|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1066	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CGGCCTCGGAGGGCAGAGGGC	0.667									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				33	16					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9108305	9108305	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:9108305G>A	uc003jek.2	-	16	2732	c.2020C>T	c.(2020-2022)CAA>TAA	p.Q674*		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	674	TSP type-1 3.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CGGCGAGCTTGAATGCCACCC	0.552													12	8					0	0	1	0	0
CMBL	134147	broad.mit.edu	37	5	10282390	10282390	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:10282390C>T	uc003jes.2	-	5	928	c.477G>A	c.(475-477)AAG>AAA	p.K159K		NM_138809	NP_620164	Q96DG6	CMBL_HUMAN	carboxymethylenebutenolidase	159						cytosol	hydrolase activity|protein binding			skin(1)	1						CTTCAGAATCCTTGACAATGC	0.433													4	34					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	10973741	10973741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:10973741C>T	uc003jfa.1	-	22	3647	c.3502G>A	c.(3502-3504)GAT>AAT	p.D1168N	CTNND2_uc010itt.2_Missense_Mutation_p.D1077N|CTNND2_uc011cmy.1_Missense_Mutation_p.D831N|CTNND2_uc011cmz.1_Missense_Mutation_p.D735N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.D760N	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1168					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AAGGACTCATCGTAATTTCTT	0.527													59	24					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11364916	11364916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:11364916G>A	uc003jfa.1	-	8	1409	c.1264C>T	c.(1264-1266)CCC>TCC	p.P422S	CTNND2_uc010itt.2_Missense_Mutation_p.P331S|CTNND2_uc011cmy.1_Missense_Mutation_p.P85S|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	422	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCATAGATGGGATCTATGTGG	0.602													59	36					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13721196	13721196	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13721196C>T	uc003jfd.2	-	71	12234	c.12192G>A	c.(12190-12192)AAG>AAA	p.K4064K	DNAH5_uc003jfc.2_Silent_p.K232K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4064	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTTTAATCTCTTCCCCAAGG	0.522									Kartagener_syndrome				23	92					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13737596	13737596	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13737596C>T	uc003jfd.2	-	66	11262	c.11220G>A	c.(11218-11220)GAG>GAA	p.E3740E	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3740	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCTTTCTTTCTCCAATTCCT	0.368									Kartagener_syndrome				30	17					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13753570	13753570	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13753570C>T	uc003jfd.2	-	63	10686	c.10644G>A	c.(10642-10644)AAG>AAA	p.K3548K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3548					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTCATTTCCTTCCGCCAGT	0.398									Kartagener_syndrome				34	108					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769101	13769101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13769101G>A	uc003jfd.2	-	58	9907	c.9865C>T	c.(9865-9867)CCA>TCA	p.P3289S	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3289	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTAAAGCTGGTTTTGCTGCT	0.458									Kartagener_syndrome				117	49					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769652	13769652	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13769652C>T	uc003jfd.2	-	57	9720	c.9678G>A	c.(9676-9678)GCG>GCA	p.A3226A	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3226	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTTTCTTTCGCTTCCAGTT	0.433									Kartagener_syndrome				95	36					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769713	13769713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13769713C>T	uc003jfd.2	-	57	9659	c.9617G>A	c.(9616-9618)GGA>GAA	p.G3206E	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3206	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTTCCAATCCAGTATTCAT	0.418									Kartagener_syndrome				65	28					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13776741	13776741	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13776741G>A	uc003jfd.2	-	55	9222	c.9180C>T	c.(9178-9180)TTC>TTT	p.F3060F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3060	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGCACCTGGGGAATTCTTTTT	0.453									Kartagener_syndrome				79	32					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13814812	13814812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13814812C>T	uc003jfd.2	-	43	7174	c.7132G>A	c.(7132-7134)GAG>AAG	p.E2378K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2378	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTATGAGGCTCGAAAATGATC	0.313									Kartagener_syndrome				14	26					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830773	13830773	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13830773C>T	uc003jfd.2	-	36	6036	c.5994G>A	c.(5992-5994)GGG>GGA	p.G1998G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1998	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGACGTATTTCCCGAGGCATC	0.488									Kartagener_syndrome				37	24					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13864629	13864629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13864629C>T	uc003jfd.2	-	28	4515	c.4473G>A	c.(4471-4473)ATG>ATA	p.M1491I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1491	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCGCTCCATCATGGCTTTAC	0.502									Kartagener_syndrome				11	37					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13864735	13864735	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13864735A>G	uc003jfd.2	-	28	4409	c.4367T>C	c.(4366-4368)CTT>CCT	p.L1456P		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1456	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGCCCGGGGAAGCTTTCGACA	0.458									Kartagener_syndrome				26	14					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13876923	13876923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13876923G>A	uc003jfd.2	-	22	3308	c.3266C>T	c.(3265-3267)ACC>ATC	p.T1089I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1089	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TATCTCCAAGGTATCTAAAAA	0.294									Kartagener_syndrome				14	51					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13922233	13922233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:13922233C>T	uc003jfd.2	-	5	685	c.643G>A	c.(643-645)GAG>AAG	p.E215K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	215	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCAGACTCTCCTGTGCACCC	0.507									Kartagener_syndrome				36	13					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14488204	14488204	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:14488204C>T	uc003jff.2	+	48	7473	c.7467C>T	c.(7465-7467)ATC>ATT	p.I2489I	TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Silent_p.I2138I	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2489					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GGAGCTCCATCCCCGCCTCCC	0.721													4	23					0	0	1	0	0
MARCH11	441061	broad.mit.edu	37	5	16067685	16067685	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:16067685C>T	uc003jfo.2	-	4	1317	c.1104G>A	c.(1102-1104)CAG>CAA	p.Q368Q	MARCH11_uc010itw.1_Silent_p.Q124Q	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	368						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						CATAGCCACACTGAAACCTTG	0.493													28	233					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	17354459	17354459	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:17354459G>A	uc003jfy.2	-	1		c.270C>T			uc003jfz.2_RNA					full-length cDNA clone CS0DC022YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		GCTCCAGGTTGATCTGGCGGT	0.562													35	9					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21752007	21752007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:21752007C>T	uc010iuc.2	-	12	2682	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	CDH12_uc011cno.1_Missense_Mutation_p.E702K|CDH12_uc003jgk.2_Missense_Mutation_p.E742K|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	742	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CCACTCCCTTCGTAGGCATAT	0.507										HNSCC(59;0.17)			116	28					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21802333	21802333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:21802333C>T	uc010iuc.2	-	7	1657	c.1199G>A	c.(1198-1200)GGG>GAG	p.G400E	CDH12_uc011cno.1_Missense_Mutation_p.G360E|CDH12_uc003jgk.2_Missense_Mutation_p.G400E	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	400	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AATGATGGTCCCTACCGGAGT	0.483										HNSCC(59;0.17)			5	62					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	22078763	22078763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:22078763G>A	uc010iuc.2	-	2	481	c.23C>T	c.(22-24)TCC>TTC	p.S8F	CDH12_uc011cno.1_Missense_Mutation_p.S8F|CDH12_uc003jgk.2_Missense_Mutation_p.S8F	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	8					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GAGAAGCAGGGATAAACAGTT	0.438										HNSCC(59;0.17)			25	104					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24487846	24487846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:24487846G>A	uc003jgr.1	-	12	2625	c.2293C>T	c.(2293-2295)CTC>TTC	p.L765F	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	765	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CATTCTCGGAGGTAATCGTAG	0.418										HNSCC(23;0.051)			32	109					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24535346	24535346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:24535346C>T	uc003jgr.1	-	5	1021	c.689G>A	c.(688-690)AGA>AAA	p.R230K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	230	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GTATTGCTCTCTGTTTTCTCT	0.423										HNSCC(23;0.051)			12	42					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24537620	24537620	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:24537620A>T	uc003jgr.1	-	3	727	c.395T>A	c.(394-396)ATT>AAT	p.I132N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	132	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCTTCTGTTAATAGCTTGTGC	0.393										HNSCC(23;0.051)			87	39					0	0	1	0	0
CDH9	1007	broad.mit.edu	37	5	26890591	26890591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:26890591G>A	uc003jgs.1	-	8	1505	c.1336C>T	c.(1336-1338)CTT>TTT	p.L446F	CDH9_uc011cnv.1_Missense_Mutation_p.L39F	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	446	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TCCCGGTCAAGGGCTTTCAAA	0.423													18	46					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31299727	31299727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:31299727G>A	uc003jhe.1	+	5	1126	c.800G>A	c.(799-801)CGA>CAA	p.R267Q	CDH6_uc003jhd.1_Missense_Mutation_p.R267Q	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	267	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AACCCTCCCCGATTCCCCCAG	0.418													10	54					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31302310	31302310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:31302310G>A	uc003jhe.1	+	6	1230	c.904G>A	c.(904-906)GAA>AAA	p.E302K	CDH6_uc003jhd.1_Missense_Mutation_p.E302K	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	302	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AGAAAATGCTGAAATTGAGTA	0.448													45	12					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31305297	31305297	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:31305297A>G	uc003jhe.1	+	7	1342	c.1016A>G	c.(1015-1017)AAG>AGG	p.K339R	CDH6_uc003jhd.1_Missense_Mutation_p.K339R	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	339	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GACTTTGAAAAGAAGAAAGTG	0.433													59	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162683	33162683	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:33162683G>A	uc003jhx.2	+	1		c.418G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GACTCCTGAGGAAGAAGAGAT	0.463													4	4					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33683131	33683131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:33683131C>T	uc003jia.1	-	5	1070	c.907G>A	c.(907-909)GAA>AAA	p.E303K	ADAMTS12_uc010iuq.1_Missense_Mutation_p.E303K	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	303	Poly-Glu.|Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ACCTCTTCTTCTTCGAGTAGA	0.428										HNSCC(64;0.19)			8	32					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35641692	35641692	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35641692G>A	uc003jjo.2	+	3	432	c.321G>A	c.(319-321)AAG>AAA	p.K107K	SPEF2_uc003jjn.1_Silent_p.K107K|SPEF2_uc003jjq.3_Silent_p.K107K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	107					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCAGAAAAAGAAGAAAAGTG	0.408													19	47					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35727907	35727907	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35727907G>A	uc003jjo.2	+	21	3156	c.3045G>A	c.(3043-3045)GTG>GTA	p.V1015V	SPEF2_uc003jjp.1_Silent_p.V501V	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1015					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGGTCTATGTGAATGAACCAG	0.428													14	65					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35806880	35806880	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35806880G>A	uc003jjo.2	+	35	5193	c.5082G>A	c.(5080-5082)AGG>AGA	p.R1694R	SPEF2_uc003jjp.1_Silent_p.R1180R|SPEF2_uc003jjr.2_Silent_p.R749R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1694	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAGAAGAAAGGAAATTAAAAG	0.408													18	11					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35814619	35814619	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35814619G>A	uc003jjo.2	+	37	5544	c.5433G>A	c.(5431-5433)GAG>GAA	p.E1811E	SPEF2_uc003jjr.2_Silent_p.E866E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1811					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTGATGGAGAGAGATCACCTT	0.313													5	36					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876216	35876216	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35876216G>A	uc003jjs.2	+	8	1097	c.1008G>A	c.(1006-1008)GAG>GAA	p.E336E	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	336	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			AAGAATCTGAGAAGCAGAGGC	0.488													36	19					0	0	1	0	0
CAPSL	133690	broad.mit.edu	37	5	35910561	35910561	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:35910561G>A	uc003jjt.1	-	3	317	c.222C>T	c.(220-222)GTC>GTT	p.V74V	CAPSL_uc003jju.1_Silent_p.V74V	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	74	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			CTTTTTCCATGACCACAGCAT	0.328													41	48					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039723	36039723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:36039723C>T	uc003jjz.1	-	5	1024	c.931G>A	c.(931-933)GAA>AAA	p.E311K	UGT3A2_uc011cos.1_Missense_Mutation_p.E277K|UGT3A2_uc011cot.1_Missense_Mutation_p.E9K	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	311	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTGAAGATTTCCGGATTCTGA	0.493													17	56					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039810	36039810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:36039810C>T	uc003jjz.1	-	5	937	c.844G>A	c.(844-846)GAC>AAC	p.D282N	UGT3A2_uc011cos.1_Missense_Mutation_p.D248N|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	282	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCTCCAAGTCCTGGAGAAAG	0.443													5	40					0	0	1	0	0
RANBP3L	202151	broad.mit.edu	37	5	36257607	36257607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:36257607C>T	uc003jkh.2	-	9	1214	c.721G>A	c.(721-723)GAA>AAA	p.E241K	RANBP3L_uc011cow.1_Missense_Mutation_p.E266K	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	241					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			AATGGTTTTTCCTTGGCATAT	0.308													31	9					0	0	1	0	0
NIPBL	25836	broad.mit.edu	37	5	36986360	36986360	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:36986360T>G	uc003jkl.3	+	10	3577	c.3078T>G	c.(3076-3078)AGT>AGG	p.S1026R	NIPBL_uc003jkk.3_Missense_Mutation_p.S1026R|NIPBL_uc003jkm.1_Missense_Mutation_p.S905R	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1026					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AATCAAGAAGTTCCCTTAAAC	0.299													68	31					0	0	1	0	0
NUP155	9631	broad.mit.edu	37	5	37309285	37309285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:37309285G>A	uc003jku.1	-	24	2831	c.2713C>T	c.(2713-2715)CAA>TAA	p.Q905*	NUP155_uc003jkt.1_Nonsense_Mutation_p.Q846*|NUP155_uc010iuz.1_Nonsense_Mutation_p.Q841*	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	905					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTAATTTTTTGATATTCCTTT	0.343													7	42					0	0	1	0	0
WDR70	55100	broad.mit.edu	37	5	37516634	37516634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:37516634C>T	uc003jkv.2	+	9	917	c.859C>T	c.(859-861)CAT>TAT	p.H287Y	WDR70_uc010iva.1_Missense_Mutation_p.H287Y	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	287	WD 3.									ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCAATGCTTCATACTGGCTC	0.308													10	33					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38883985	38883985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:38883985G>A	uc003jln.1	+	5	842	c.475G>A	c.(475-477)GAA>AAA	p.E159K	OSMR_uc003jlm.1_Missense_Mutation_p.E159K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	159	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TAAGCTGGTGGAAGAAGGCAC	0.353													16	40					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38884131	38884131	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:38884131G>A	uc003jln.1	+	5	988	c.621G>A	c.(619-621)AGG>AGA	p.R207R	OSMR_uc003jlm.1_Silent_p.R207R	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	207	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTTTCATTAGGAATAAAGGGA	0.368													57	24					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38884169	38884169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:38884169G>A	uc003jln.1	+	5	1026	c.659G>A	c.(658-660)GGA>GAA	p.G220E	OSMR_uc003jlm.1_Missense_Mutation_p.G220E	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	220	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GCAAGTCAAGGAAATGTCAGT	0.388													72	30					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38885467	38885467	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:38885467C>T	uc003jln.1	+	6	1087	c.720C>T	c.(718-720)CCC>CCT	p.P240P	OSMR_uc003jlm.1_Silent_p.P240P	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	240	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TTGAGGAGCCCAAGGACTTTT	0.438													41	20					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39134959	39134959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:39134959G>A	uc003jls.2	-	7	1740	c.1673C>T	c.(1672-1674)TCA>TTA	p.S558L	FYB_uc003jlt.2_Missense_Mutation_p.S558L|FYB_uc003jlu.2_Missense_Mutation_p.S558L|FYB_uc011cpl.1_Missense_Mutation_p.S568L	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	558	SH3.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			GCACTCACATGAACCCCTTGC	0.433													31	11					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40853364	40853364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:40853364G>A	uc003jmg.2	+	3	2005	c.1930G>A	c.(1930-1932)GAG>AAG	p.E644K		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	644					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TGTGTCTGTGGAGGATATGGC	0.522													56	223					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40958222	40958222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:40958222G>A	uc003jmh.2	+	11	1462	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	450	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				AGAGTATCTGGATGAATTTGA	0.443													12	54					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40958353	40958353	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:40958353G>A	uc003jmh.2	+	11	1593	c.1479G>A	c.(1477-1479)GGG>GGA	p.G493G	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	493					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TCCTCGTAGGGAATCAAGCAG	0.488													15	53					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41005676	41005676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:41005676G>A	uc003jmj.3	-	35	4311	c.3821C>T	c.(3820-3822)TCC>TTC	p.S1274F	HEATR7B2_uc003jmi.3_Missense_Mutation_p.S829F	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1274	HEAT 14.						binding			ovary(6)|central_nervous_system(2)	8						GTTCTCCGAGGAGGAGGTAAG	0.512													10	8					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41038977	41038977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:41038977C>T	uc003jmj.3	-	21	2565	c.2075G>A	c.(2074-2076)GGG>GAG	p.G692E	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G247E	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	692	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						GCTCTTTTTCCCAGAAAAAAG	0.438													26	16					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41039557	41039557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:41039557C>T	uc003jmj.3	-	20	2544	c.2054G>A	c.(2053-2055)CGA>CAA	p.R685Q	HEATR7B2_uc003jmi.3_Missense_Mutation_p.R240Q	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	685	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						TACCTTACATCGATTCATGAA	0.323													3	13					0	0	1	0	0
PLCXD3	345557	broad.mit.edu	37	5	41313857	41313857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:41313857C>T	uc003jmm.1	-	3	930	c.828G>A	c.(826-828)ATG>ATA	p.M276I		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	276					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						CCCACTGCATCATGGCAGGAA	0.433													25	17					0	0	1	0	0
OXCT1	5019	broad.mit.edu	37	5	41794831	41794831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:41794831G>A	uc003jmn.2	-	12	1451	c.1120C>T	c.(1120-1122)CTT>TTT	p.L374F	OXCT1_uc011cpo.1_5'Flank|OXCT1_uc011cpp.1_5'Flank	NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	374					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	GCTCCTGGAAGAATAGTAACT	0.398													9	42					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45262060	45262060	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:45262060G>T	uc003jok.2	-	8	2661	c.2636C>A	c.(2635-2637)CCA>CAA	p.P879Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	879	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTCTGCGTCTGGGTCTGTGTT	0.488													92	49					6.00078e-37	6.09057e-37	1	1	0
HCN1	348980	broad.mit.edu	37	5	45267196	45267196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:45267196C>T	uc003jok.2	-	7	1803	c.1778G>A	c.(1777-1779)CGA>CAA	p.R593Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	593	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AGTACCTATTCGATCTAGTCG	0.378													8	47					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45303699	45303699	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:45303699A>G	uc003jok.2	-	6	1643	c.1618_splice	c.e6+1	p.E540_splice		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic							integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTTTTTACTAACCTCCAAAGT	0.348													12	43					0	0	1	0	0
DDX4	54514	broad.mit.edu	37	5	55110772	55110772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:55110772C>T	uc003jqg.3	+	20	1833	c.1759C>T	c.(1759-1761)CGC>TGC	p.R587C	DDX4_uc010ivz.2_Missense_Mutation_p.R567C|DDX4_uc003jqh.3_Missense_Mutation_p.R553C|DDX4_uc003jqj.2_Missense_Mutation_p.R438C	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	587	Helicase C-terminal.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TGGAGATTTTCGCTTTGGAAA	0.403													39	27					0	0	1	0	0
ANKRD55	79722	broad.mit.edu	37	5	55396030	55396030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:55396030G>A	uc003jqu.2	-	12	1977	c.1825C>T	c.(1825-1827)CCC>TCC	p.P609S	ANKRD55_uc003jqt.2_Missense_Mutation_p.P321S	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	608										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				TCACTGGTGGGGTTGGCAGAA	0.448													41	38					0	0	1	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407230	55407230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:55407230C>T	uc003jqu.2	-	10	1497	c.1345G>A	c.(1345-1347)GCC>ACC	p.A449T	ANKRD55_uc003jqt.2_Missense_Mutation_p.A161T	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	448										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				CTATGGGAGGCTGTTAGGAAG	0.507													13	25					0	0	1	0	0
MAP3K1	4214	broad.mit.edu	37	5	56178417	56178417	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:56178417C>T	uc003jqw.3	+	14	3891	c.3390C>T	c.(3388-3390)TCC>TCT	p.S1130S		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	1130					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AGCTCAACTCCAGTATTGAGG	0.423													20	21					0	0	1	0	0
PLK2	10769	broad.mit.edu	37	5	57752864	57752864	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:57752864T>A	uc003jrn.2	-	8	1191	c.1064A>T	c.(1063-1065)CAC>CTC	p.H355L		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	355					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		GCTTGATAAGTGGAAATCTGG	0.403													23	19					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256583	63256583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:63256583C>T	uc011cqt.1	-	1	964	c.964G>A	c.(964-966)GAG>AAG	p.E322K		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	322	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TTTTTCCTCTCGAAAGAGGCG	0.617													25	27					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483969	64483969	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:64483969C>T	uc003jtp.2	-	22	3598	c.2784G>A	c.(2782-2784)AGG>AGA	p.R928R	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	928	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GTCCGATCTTCCTGATGCAGA	0.527													60	70					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64492907	64492907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:64492907G>A	uc003jtp.2	-	21	3461	c.2647C>T	c.(2647-2649)CCT>TCT	p.P883S	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	883	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTACTGTCAGGATCACAGTAA	0.433													18	19					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64629908	64629908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:64629908C>T	uc003jtp.2	-	8	1892	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	360	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GTGCAGATATCATATCTATGG	0.269													14	15					0	0	1	0	0
NLN	57486	broad.mit.edu	37	5	65081739	65081739	+	Splice_Site	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:65081739T>C	uc003juf.2	+	7	1074	c.958_splice	c.e7+2	p.D320_splice	NLN_uc003jue.2_Splice_Site_p.D320_splice|NLN_uc003jug.2_Splice_Site_p.D149_splice|NLN_uc010iww.2_Splice_Site_p.D15_splice	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor						proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		CCTTTCTAGGTTAGTTCTTTT	0.413													10	17					0	0	1	0	0
NAIP	4671	broad.mit.edu	37	5	70307129	70307129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:70307129C>T	uc003kar.1	-	5	1359	c.641G>A	c.(640-642)TGG>TAG	p.W214*	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Nonsense_Mutation_p.W214*|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	214	BIR 2.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		ATGTTCCTTCCAAGGATCATC	0.284													10	10					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71492659	71492659	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:71492659C>T	uc003kbw.3	+	5	3718	c.3477C>T	c.(3475-3477)TTC>TTT	p.F1159F	MAP1B_uc010iyw.1_Silent_p.F1176F|MAP1B_uc010iyx.1_Silent_p.F1033F|MAP1B_uc010iyy.1_Silent_p.F1033F	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1159						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CTCAGGAATTCGTAAATATCA	0.443													8	7					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71493780	71493780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:71493780C>T	uc003kbw.3	+	5	4839	c.4598C>T	c.(4597-4599)CCT>CTT	p.P1533L	MAP1B_uc010iyw.1_Missense_Mutation_p.P1550L|MAP1B_uc010iyx.1_Missense_Mutation_p.P1407L|MAP1B_uc010iyy.1_Missense_Mutation_p.P1407L	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1533						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TCAGCTACTCCTGTTGATGAG	0.473													14	32					0	0	1	0	0
GFM2	84340	broad.mit.edu	37	5	74046460	74046460	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:74046460A>G	uc003kdh.1	-	7	767	c.463T>C	c.(463-465)TGC>CGC	p.C155R	GFM2_uc003kdi.1_Missense_Mutation_p.C155R|GFM2_uc010izj.1_Missense_Mutation_p.C187R|GFM2_uc010izk.1_RNA|GFM2_uc003kdj.1_Missense_Mutation_p.C155R|GFM2_uc010izl.1_Missense_Mutation_p.C113R	NM_032380	NP_115756	Q969S9	RRF2M_HUMAN	mitochondrial elongation factor G2 isoform 1	155					mitochondrial translation|ribosome disassembly	mitochondrion	GTP binding|GTPase activity				0		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.86e-56)		ACTCTTAGGCACCGCTCAACC	0.343													10	19					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75936888	75936888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:75936888C>T	uc003kek.2	+	17	2276	c.2054C>T	c.(2053-2055)TCA>TTA	p.S685L	IQGAP2_uc010izv.2_Missense_Mutation_p.S238L|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	685					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GCTAGAAAATCATTTTTGCAT	0.393													10	19					0	0	1	0	0
F2R	2149	broad.mit.edu	37	5	76029048	76029048	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:76029048T>A	uc003ken.3	+	2	1263	c.998T>A	c.(997-999)CTG>CAG	p.L333Q		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	333	Helical; Name=6; (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	AACGTCCTCCTGATTGCGCAT	0.522													22	37					0	0	1	0	0
F2RL1	2150	broad.mit.edu	37	5	76129575	76129575	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:76129575G>A	uc003keo.2	+	2	1318	c.1143G>A	c.(1141-1143)AGG>AGA	p.R381R		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	381	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		AACACTCCAGGAAATCCAGCT	0.463													73	180					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76332480	76332480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:76332480G>A	uc003ket.2	+	4	976	c.616G>A	c.(616-618)GGA>AGA	p.G206R	AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	206					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		ATCACAGACTGGATTTAGTTA	0.383													10	322					0	0	1	0	0
SCAMP1	9522	broad.mit.edu	37	5	77755108	77755108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:77755108C>T	uc003kfl.2	+	10	932	c.775C>T	c.(775-777)CCT>TCT	p.P259S	SCAMP1_uc010jaa.2_RNA|SCAMP1_uc011ctc.1_RNA|SCAMP1_uc011ctd.1_RNA|SCAMP1_uc003kfm.2_RNA|SCAMP1_uc003kfn.2_5'UTR	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	259	Lumenal (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		CCAAAATATTCCTGTTGGAAT	0.308													12	5					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78411594	78411594	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:78411594T>A	uc003kfu.3	+	2	143	c.38T>A	c.(37-39)ATC>AAC	p.I13N	BHMT_uc011cti.1_Missense_Mutation_p.I13N	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	13	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	TTTTAGGGCATCCTAGAACGT	0.403													26	21					0	0	1	0	0
PAPD4	167153	broad.mit.edu	37	5	78941001	78941001	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:78941001C>T	uc010jae.1	+	9	1225	c.807C>T	c.(805-807)TTC>TTT	p.F269F	PAPD4_uc003kgb.2_Silent_p.F269F|PAPD4_uc010jaf.1_Silent_p.F269F|PAPD4_uc003kga.2_Silent_p.F265F|PAPD4_uc003kfz.2_Silent_p.F269F	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	269					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		TTGTGAAGTTCAGGGATAAAG	0.333													7	7					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79024871	79024871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79024871C>T	uc003kgc.2	+	2	355	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	95						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATCTTCTACTCCTTGGGCTTC	0.448													72	54					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79028721	79028721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79028721C>T	uc003kgc.2	+	2	4205	c.4133C>T	c.(4132-4134)TCT>TTT	p.S1378F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1378						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACAGATTCATCTCTTATCACT	0.393													5	12					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79366132	79366132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79366132G>A	uc003kgh.2	+	12	1674	c.1351G>A	c.(1351-1353)GGA>AGA	p.G451R	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	451	EGF-like 4.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TTTACAGTGTGGAGTCGGTTG	0.552													14	18					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79375868	79375868	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79375868C>T	uc003kgh.2	+	21	2975	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	884	TSP C-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACCGCTGGTTCCTACAGCACA	0.587													4	11					0	0	1	0	0
SPZ1	84654	broad.mit.edu	37	5	79616572	79616572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79616572G>A	uc003kgn.2	+	1	783	c.538G>A	c.(538-540)GCC>ACC	p.A180T	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	180	Basic motif (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		TGTTAGTTTAGCCCCAGAGAA	0.383													15	10					0	0	1	0	0
LOC441089	441089	broad.mit.edu	37	5	79647566	79647566	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79647566C>T	uc010jaj.1	-	1		c.220G>A				NR_003665				Homo sapiens CRSP8 pseudogene (LOC441089), non-coding RNA.												0						TCAGACGTTCCAGCTCATTGA	0.537													46	39					0	0	1	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79854508	79854508	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:79854508G>C	uc010jam.2	-	4	1681	c.1331C>G	c.(1330-1332)ACC>AGC	p.T444S	ANKRD34B_uc003kgw.2_Missense_Mutation_p.T444S|ANKRD34B_uc010jan.2_Missense_Mutation_p.T444S	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	444						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		CCCTTGTCTGGTTTGGGTAAC	0.453													43	24					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80638562	80638562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:80638562C>T	uc003khl.3	-	11	1112	c.1057G>A	c.(1057-1059)GAC>AAC	p.D353N	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	353	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		ACATTGCTGTCACTCAGGGAT	0.403													31	32					0	0	1	0	0
ATP6AP1L	92270	broad.mit.edu	37	5	81614000	81614000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:81614000C>T	uc003khv.2	+	10	1881	c.556C>T	c.(556-558)CCT>TCT	p.P186S	ATP6AP1L_uc003khw.2_Missense_Mutation_p.P186S	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	186					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						CATCGCCTCTCCTGCCCACTT	0.547													17	23					0	0	1	0	0
NBPF22P	285622	broad.mit.edu	37	5	85578736	85578736	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:85578736C>T	uc003kiq.2	+	1	475	c.213C>T	c.(211-213)TCC>TCT	p.S71S		NR_003719				SubName: Full=Putative uncharacterized protein NBPF22P;												0						CTGCCTACTCCCTGGCCAACC	0.433													4	7					0	0	1	0	0
TMEM161B	153396	broad.mit.edu	37	5	87498844	87498844	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:87498844G>A	uc003kjc.2	-	9	974	c.849C>T	c.(847-849)CTC>CTT	p.L283L	TMEM161B_uc011cty.1_Silent_p.L272L|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Silent_p.L150L|TMEM161B_uc011ctx.1_Silent_p.L101L	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	283	Helical; (Potential).					integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		GTTTTACCCAGAGCAGAACCA	0.363													21	45					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89941810	89941810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:89941810C>T	uc003kju.2	+	16	3020	c.2924C>T	c.(2923-2925)ACC>ATC	p.T975I	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	975	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAAGAATTTACCGTTATCCTA	0.338													6	10					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89949562	89949562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:89949562G>A	uc003kju.2	+	20	4267	c.4171G>A	c.(4171-4173)GAA>AAA	p.E1391K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1391	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACAAACAAACGAATCCCATGT	0.393													9	5					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89953898	89953898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:89953898G>A	uc003kju.2	+	21	4651	c.4555G>A	c.(4555-4557)GGA>AGA	p.G1519R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1519	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTTCAGACAGGGAGAAACTAA	0.383													23	50					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90004662	90004662	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:90004662C>T	uc003kju.2	+	39	8856	c.8760C>T	c.(8758-8760)TTC>TTT	p.F2920F	GPR98_uc003kjt.2_Silent_p.F626F|GPR98_uc003kjv.2_Silent_p.F520F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2920	Calx-beta 20.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGAATATTTCCTGGTGAATT	0.358													34	28					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90073739	90073739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:90073739G>A	uc003kju.2	+	62	12641	c.12545G>A	c.(12544-12546)GGG>GAG	p.G4182E	GPR98_uc003kjt.2_Missense_Mutation_p.G1888E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4182	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CGAGGCCCAGGGATTTTGGGG	0.413													7	12					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90136540	90136540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:90136540G>A	uc003kju.2	+	78	16853	c.16757G>A	c.(16756-16758)GGA>GAA	p.G5586E	GPR98_uc003kjt.2_Missense_Mutation_p.G3292E|GPR98_uc003kjw.2_Missense_Mutation_p.G1247E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5586	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAGAGACAGGATCTTTAAAT	0.423													30	96					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94289029	94289029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:94289029C>T	uc003kkx.2	-	3	875	c.875G>A	c.(874-876)GGA>GAA	p.G292E	MCTP1_uc003kkv.2_Missense_Mutation_p.G71E|MCTP1_uc003kkw.2_Missense_Mutation_p.G71E|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	292	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		AACTTCTTTTCCTCCGATTTT	0.373													5	9					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95761542	95761542	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:95761542C>T	uc003kls.1	-	3	584	c.378G>A	c.(376-378)TGG>TGA	p.W126*		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	126	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATTGCTGATTCCACATGGGAT	0.418													14	21					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101748841	101748841	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:101748841C>T	uc003knn.2	-	9	1651	c.1479G>A	c.(1477-1479)GGG>GGA	p.G493G	SLCO6A1_uc003kno.2_Silent_p.G240G|SLCO6A1_uc003knp.2_Silent_p.G493G|SLCO6A1_uc003knq.2_Silent_p.G431G	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	493	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TTCCCAACTTCCCTGTTCTGT	0.308													13	21					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101816103	101816103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:101816103C>T	uc003knn.2	-	2	566	c.394G>A	c.(394-396)GAT>AAT	p.D132N	SLCO6A1_uc003kno.2_Missense_Mutation_p.D132N|SLCO6A1_uc003knp.2_Missense_Mutation_p.D132N|SLCO6A1_uc003knq.2_Missense_Mutation_p.D132N	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	132	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TTCTGAAAATCGCCAATGCTG	0.333													14	48					0	0	1	0	0
EFNA5	1946	broad.mit.edu	37	5	106762969	106762969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:106762969G>A	uc003kol.2	-	2	649	c.367C>T	c.(367-369)CCC>TCC	p.P123S	EFNA5_uc010jbr.1_Missense_Mutation_p.P123S	NM_001962	NP_001953	P52803	EFNA5_HUMAN	ephrin-A5 precursor	123					cell-cell signaling	anchored to plasma membrane|caveola|extracellular space	ephrin receptor binding				0		all_cancers(142;5.15e-06)|all_epithelial(76;4.39e-07)|Prostate(80;0.00726)|Lung NSC(167;0.0736)|Ovarian(225;0.0797)|all_lung(232;0.0854)|Colorectal(57;0.241)		Epithelial(69;1.25e-12)|OV - Ovarian serous cystadenocarcinoma(64;1.32e-11)|BRCA - Breast invasive adenocarcinoma(61;0.0376)|COAD - Colon adenocarcinoma(37;0.109)		AGAGAAAAGGGAGTGAAGAGC	0.463													22	11					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110809014	110809014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:110809014G>A	uc011cvj.1	+	9	730	c.631G>A	c.(631-633)GAA>AAA	p.E211K	CAMK4_uc003kpf.2_Missense_Mutation_p.E211K|CAMK4_uc010jbv.2_Missense_Mutation_p.E14K	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	211	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		TGCAGCACCTGAAATTCTTAG	0.318													24	44					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111576448	111576448	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:111576448C>T	uc003kpv.1	-	10	1129	c.855G>A	c.(853-855)TGG>TGA	p.W285*		NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	285	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CACTGCACTTCCAGAGGTGCT	0.323													18	28					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112175569	112175569	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:112175569C>T	uc010jby.2	+	16	4658	c.4278C>T	c.(4276-4278)AGC>AGT	p.S1426S	APC_uc011cvt.1_Silent_p.S1408S|APC_uc003kpz.3_Silent_p.S1426S|APC_uc003kpy.3_Silent_p.S1426S|APC_uc010jbz.2_Silent_p.S1143S|APC_uc010jca.2_Silent_p.S726S	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1426	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.S1426fs*47(3)|p.Y1376fs*41(1)|p.?(1)|p.P1424fs*19(1)|p.P1427fs*46(1)|p.S1411fs*41(1)|p.K1192fs*3(1)|p.S1426fs*46(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TTCCAGATAGCCCTGGACAAA	0.468		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			16	22					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112178722	112178722	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:112178722C>T	uc010jby.2	+	16	7811	c.7431C>T	c.(7429-7431)TCC>TCT	p.S2477S	APC_uc011cvt.1_Silent_p.S2459S|APC_uc003kpz.3_Silent_p.S2477S|APC_uc003kpy.3_Silent_p.S2477S|APC_uc010jbz.2_Silent_p.S2194S|APC_uc010jca.2_Silent_p.S1777S	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2477	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CCACTAGGTCCCAGGCACAAA	0.458		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			15	43					0	0	1	0	0
YTHDC2	64848	broad.mit.edu	37	5	112926748	112926748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:112926748C>T	uc003kqn.2	+	27	4019	c.3836C>T	c.(3835-3837)TCT>TTT	p.S1279F		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	1279	Ser-rich.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		GGCTCAAAATCTCCTTCGCCA	0.363													9	16					0	0	1	0	0
SEMA6A	57556	broad.mit.edu	37	5	115783293	115783293	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:115783293G>A	uc010jck.2	-	19	2818	c.2109C>T	c.(2107-2109)ACC>ACT	p.T703T	SEMA6A_uc003krx.3_Silent_p.T720T|SEMA6A_uc011cwe.1_Silent_p.T82T|SEMA6A_uc003krv.3_Silent_p.T130T|SEMA6A_uc003krw.3_Silent_p.T180T|SEMA6A_uc010jcj.2_Silent_p.T247T	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	703	Cytoplasmic (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		CGCTGAGCTTGGTGACGCTGC	0.622													36	55					0	0	1	0	0
PRR16	51334	broad.mit.edu	37	5	120022100	120022100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:120022100G>A	uc003ksq.2	+	2	774	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	PRR16_uc003ksp.2_Missense_Mutation_p.R181Q|PRR16_uc003ksr.2_Missense_Mutation_p.R134Q	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	204	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CCTCGAGAACGAGTTCGGTTT	0.468													20	17					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759225	121759225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:121759225G>A	uc003ksw.1	+	4	999	c.793G>A	c.(793-795)GAT>AAT	p.D265N	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.D265N|SNCAIP_uc003ksx.1_Missense_Mutation_p.D312N|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.D265N	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	265					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GACATTTAGTGATCCTCATGG	0.473													18	17					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121761086	121761086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:121761086G>A	uc003ksw.1	+	5	1248	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E348K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E395K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E42K|SNCAIP_uc010jcx.1_Intron	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	348					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AATTCACGACGAAAATGGAAA	0.438													84	10					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786421	121786421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:121786421G>A	uc003ksw.1	+	10	2085	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K	SNCAIP_uc011cwl.1_Missense_Mutation_p.E185K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E674K|SNCAIP_uc003ksy.1_Missense_Mutation_p.E261K|SNCAIP_uc003ksz.1_Missense_Mutation_p.E261K|SNCAIP_uc010jcu.2_Missense_Mutation_p.E223K|SNCAIP_uc011cwm.1_Missense_Mutation_p.E261K|SNCAIP_uc003kta.1_Missense_Mutation_p.E259K|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E321K|SNCAIP_uc010jcx.1_Missense_Mutation_p.E567K|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.E143K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	627	ANK 5.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		ATTGGGAAAGGAAATCTCAGA	0.458													24	16					0	0	1	0	0
SNX2	6643	broad.mit.edu	37	5	122143971	122143971	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:122143971G>A	uc003kte.2	+	7	693	c.644_splice	c.e7-1	p.G215_splice	SNX2_uc011cwn.1_Splice_Site_p.G98_splice	NM_003100	NP_003091	O60749	SNX2_HUMAN	sorting nexin 2						cell communication|endocytosis|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding|protein transporter activity			kidney(1)	1		all_cancers(142;1.14e-44)|all_lung(232;1.03e-13)|Lung NSC(810;2.5e-13)|Breast(839;0.000812)|Myeloproliferative disorder(839;0.0122)|Prostate(80;0.0235)|all_hematologic(541;0.0592)|all_neural(839;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	all cancers(49;2.13e-24)|Epithelial(69;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(64;5.6e-11)|BRCA - Breast invasive adenocarcinoma(61;0.00013)|GBM - Glioblastoma multiforme(465;0.000357)|COAD - Colon adenocarcinoma(49;0.000887)|Lung(113;0.0109)		CTTCTTCAAAGGGATGACCAA	0.333													8	5					0	0	1	0	0
MARCH3	115123	broad.mit.edu	37	5	126206349	126206349	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:126206349C>T	uc003kuf.2	-	5	1193	c.738G>A	c.(736-738)AGG>AGA	p.R246R		NM_178450	NP_848545	Q86UD3	MARH3_HUMAN	membrane-associated ring finger (C3HC4) 3	246					endocytosis	cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosome	ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.074)|OV - Ovarian serous cystadenocarcinoma(64;0.0793)		CCTTTGAGTTCCTCTTGACCG	0.488													12	29					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126791215	126791215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:126791215G>A	uc003kuh.3	+	25	3510	c.3148G>A	c.(3148-3150)GAG>AAG	p.E1050K	MEGF10_uc003kui.3_Missense_Mutation_p.E1050K	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1050	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TGGTTATGTGGAGATGAAATC	0.443													34	29					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127686624	127686624	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:127686624C>T	uc003kuu.2	-	21	3187	c.2748G>A	c.(2746-2748)CTG>CTA	p.L916L	FBN2_uc003kuv.2_Silent_p.L883L	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	916	TB 4.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ATTCAGATTTCAGAGTGGCTC	0.557													20	41					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128983558	128983559	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:128983558_128983559GG>AA	uc003kvb.1	+	12	1955_1956	c.1955_1956GG>AA	c.(1954-1956)GGG>GAA	p.G652E	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	652	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGCAGTGCTGGGATCAGCAGTC	0.52													32	120					0	0	1	0	0
P4HA2	8974	broad.mit.edu	37	5	131554251	131554251	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:131554251G>A	uc003kwh.2	-	2	633	c.69C>T	c.(67-69)TTC>TTT	p.F23F	P4HA2_uc003kwg.2_Silent_p.F23F|P4HA2_uc003kwi.2_Silent_p.F23F|P4HA2_uc003kwk.2_Silent_p.F23F|P4HA2_uc003kwl.2_Silent_p.F23F|P4HA2_uc003kwj.2_Silent_p.F23F	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	23						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	TAGAGGTGAAGAATTCGGCCT	0.527													14	6					0	0	1	0	0
AFF4	27125	broad.mit.edu	37	5	132232073	132232073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:132232073C>T	uc003kyd.2	-	11	2657	c.2249G>A	c.(2248-2250)AGA>AAA	p.R750K	AFF4_uc011cxk.1_Missense_Mutation_p.R428K|AFF4_uc003kye.1_Missense_Mutation_p.R750K	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	750					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTGAGCCTCTCTCGTGTGCTT	0.408													78	30					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132552948	132552948	+	Silent	SNP	G	A	A	rs111394662		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:132552948G>A	uc003kyn.1	-	13	1799	c.1581C>T	c.(1579-1581)GTC>GTT	p.V527V	FSTL4_uc003kym.1_Silent_p.V176V	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	527						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTTGGATGTCGACCACAAGGA	0.502													62	31					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132552996	132552996	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:132552996G>A	uc003kyn.1	-	13	1751	c.1533C>T	c.(1531-1533)AAC>AAT	p.N511N	FSTL4_uc003kym.1_Silent_p.N160N	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	511						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGATGTACCGGTTCCGGACAT	0.498													21	46					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132652232	132652232	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:132652232C>T	uc003kyn.1	-	5	740	c.522G>A	c.(520-522)CAG>CAA	p.Q174Q		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	174	EF-hand.					extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGAGGCGCTTCTGGGAGGCAG	0.592											OREG0016777	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	51					0	0	1	0	0
DDX46	9879	broad.mit.edu	37	5	134120158	134120158	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:134120158C>T	uc003kzw.2	+	10	1437	c.1269C>T	c.(1267-1269)ACC>ACT	p.T423T	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	423	ATP (By similarity).|Helicase ATP-binding.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTGGAAAGACCATTGCTTTTC	0.423													18	46					0	0	1	0	0
LECT2	3950	broad.mit.edu	37	5	135283133	135283133	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:135283133T>C	uc003lbe.1	-	4	544	c.343A>G	c.(343-345)AAG>GAG	p.K115E	FBXL21_uc003lbc.2_Intron	NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	115					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCTCCCTTCTTAATAGGACCT	0.343													17	38					0	0	1	0	0
TGFBI	7045	broad.mit.edu	37	5	135388740	135388740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:135388740C>T	uc003lbf.3	+	8	1219	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	TGFBI_uc003lbg.3_Missense_Mutation_p.S86F|TGFBI_uc003lbh.3_Missense_Mutation_p.S179F|TGFBI_uc011cyb.1_Missense_Mutation_p.S179F|TGFBI_uc010jed.2_Missense_Mutation_p.S86F	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	353	FAS1 2.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCGATCATCTCCAATAAAGAC	0.602													31	14					0	0	1	0	0
SIL1	64374	broad.mit.edu	37	5	138378348	138378348	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:138378348G>A	uc003ldm.2	-	4	431	c.414C>T	c.(412-414)TTC>TTT	p.F138F	SIL1_uc003ldn.2_Silent_p.F137F|SIL1_uc003ldo.2_Silent_p.F138F|SIL1_uc003ldp.2_Silent_p.F138F|SIL1_uc003ldq.1_5'UTR	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	138	Interaction with HSPA5 and localization to the endoplasmic reticulum (By similarity).				intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CCCCCTCCTTGAATTTTGCCA	0.453									Marinesco-Sj_gren_syndrome				84	36					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139189358	139189358	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:139189358C>T	uc003leu.1	+	2	538	c.333C>T	c.(331-333)TCC>TCT	p.S111S		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	111					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAATGCTTCCAGGAGCCTCT	0.557													88	34					0	0	1	0	0
HARS	3035	broad.mit.edu	37	5	140062771	140062771	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140062771C>G	uc003lgv.2	-	3	296	c.214G>C	c.(214-216)GTT>CTT	p.V72L	HARS_uc003lgu.2_Missense_Mutation_p.V3L|HARS_uc011czm.1_Intron|HARS_uc003lgw.2_Missense_Mutation_p.V72L|HARS_uc011czn.1_Intron|HARS_uc010jfu.2_Missense_Mutation_p.V72L|HARS_uc011czo.1_Missense_Mutation_p.V72L|HARS_uc011czp.1_Intron|HARS_uc011czq.1_Missense_Mutation_p.V72L	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	72					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	TTCTCGCGAACTGCCATCTGC	0.458													18	53					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167118	140167118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140167118C>T	uc003lhb.2	+	1	1243	c.1243C>T	c.(1243-1245)CGC>TGC	p.R415C	PCDHA1_uc003lha.2_Missense_Mutation_p.R415C|PCDHA1_uc003lgz.2_Missense_Mutation_p.R415C	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	415	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCTGGATCGCGAGAGCCT	0.637													97	49					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174612	140174612	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140174612C>T	uc003lhd.2	+	1	169	c.63C>T	c.(61-63)CTC>CTT	p.L21L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L21L|PCDHA2_uc011czy.1_Silent_p.L21L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	21					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGCTCCTCGCAGCCTGGG	0.622													54	21					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182156	140182156	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140182156C>T	uc003lhf.2	+	1	1374	c.1374C>T	c.(1372-1374)TCC>TCT	p.S458S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.S458S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	458	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCGCAGTCCGAGTACACGG	0.667													41	111					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202033	140202033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140202033G>A	uc003lhl.2	+	1	673	c.673G>A	c.(673-675)GTT>ATT	p.V225I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.V225I|PCDHA5_uc003lhj.1_Missense_Mutation_p.V225I	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	225	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACAGGTACAGTTCAGTTGTT	0.383													23	66					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202440	140202440	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140202440G>A	uc003lhl.2	+	1	1080	c.1080G>A	c.(1078-1080)GAG>GAA	p.E360E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.E360E|PCDHA5_uc003lhj.1_Silent_p.E360E	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	360	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGTCAAAGAGGACGCTCCAC	0.527													54	29					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207946	140207946	+	Silent	SNP	C	T	T	rs140846988	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140207946C>T	uc003lho.2	+	1	297	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.I90I|PCDHA6_uc011dab.1_Silent_p.I90I	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.602													147	87					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140220978	140220978	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140220978G>A	uc003lhs.2	+	1	72	c.72G>A	c.(70-72)TGG>TGA	p.W24*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Nonsense_Mutation_p.W24*	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	24					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCAGCCTGGAAGGTGGGGA	0.597													13	65					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229536	140229536	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140229536G>T	uc003lhu.2	+	1	2180	c.1456G>T	c.(1456-1458)GAG>TAG	p.E486*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Nonsense_Mutation_p.E486*	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	486	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACGCGCAGGAGAACGCCCT	0.662													26	1					3.73988e-18	3.78152e-18	1	1	0
PCDHA10	56139	broad.mit.edu	37	5	140235929	140235929	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140235929T>C	uc003lhx.2	+	1	296	c.296T>C	c.(295-297)GTG>GCG	p.V99A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.V99A|PCDHA10_uc011dad.1_Missense_Mutation_p.V99A	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	99	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCGGAGCGTGGAGTGCAGC	0.562													6	62					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250388	140250388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140250388C>T	uc003lia.2	+	1	2558	c.1700C>T	c.(1699-1701)ACT>ATT	p.T567I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.T567I	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	567	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTGGCGACTCAGGCTGGC	0.687													101	40					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255890	140255890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140255890C>T	uc003lic.2	+	1	960	c.833C>T	c.(832-834)TCC>TTC	p.S278F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.S278F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	278	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAAATTTCCTATGGGATC	0.368													33	104					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256431	140256431	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140256431C>T	uc003lic.2	+	1	1501	c.1374C>T	c.(1372-1374)CCC>CCT	p.P458P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.P458P	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	458	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCGCAGCCCGAGTACACAG	0.657													30	113					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262171	140262171	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140262171G>A	uc003lif.2	+	1	318	c.318G>A	c.(316-318)CTG>CTA	p.L106L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.L106L|PCDHA13_uc003lid.2_Silent_p.L106L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	106	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATCCACCTGGAGGTGATCG	0.537													52	160					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262210	140262210	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140262210G>A	uc003lif.2	+	1	357	c.357G>A	c.(355-357)GTG>GTA	p.V119V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.V119V|PCDHA13_uc003lid.2_Silent_p.V119V	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	119	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTTCCATGTGGAGGTGAAGG	0.537													39	118					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263249	140263249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140263249G>A	uc003lif.2	+	1	1396	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.E466K|PCDHA13_uc003lid.2_Missense_Mutation_p.E466K	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	466	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTCGTGAAGGAAAACAATCC	0.672													23	95					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263768	140263768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140263768G>A	uc003lif.2	+	1	1915	c.1915G>A	c.(1915-1917)GAG>AAG	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.E639K|PCDHA13_uc003lid.2_Missense_Mutation_p.E639K	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTCTGGACGAGGTGGACGC	0.682													18	59					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347416	140347416	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140347416C>T	uc003lii.2	+	1	1305	c.1065C>T	c.(1063-1065)ATC>ATT	p.I355I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.I355I	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	355	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGGACATCGTGGACGTGA	0.577													47	15					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347637	140347637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140347637G>A	uc003lii.2	+	1	1526	c.1286G>A	c.(1285-1287)CGA>CAA	p.R429Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.R429Q	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	429	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding	p.R429R(1)		ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACTGGACCGAGAGCGGGTG	0.572													28	88					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347843	140347843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140347843G>A	uc003lii.2	+	1	1732	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.E498K	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	498	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACCCAGATGAAAAGGAGAA	0.512													38	91					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389234	140389234	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140389234C>T	uc003lii.2	+	4	2976	c.2736C>T	c.(2734-2736)TCC>TCT	p.S912S	PCDHA1_uc003lha.2_Silent_p.S591S|PCDHA1_uc003lhb.2_Silent_p.S855S|PCDHA2_uc003lhd.2_Silent_p.S853S|PCDHA3_uc003lhf.2_Silent_p.S855S|PCDHA4_uc003lhi.2_Silent_p.S852S|PCDHA4_uc003lhh.1_Silent_p.S852S|PCDHA5_uc003lhk.1_Silent_p.S841S|PCDHA5_uc003lhl.2_Silent_p.S841S|PCDHA6_uc003lhn.2_Silent_p.S591S|PCDHA6_uc003lho.2_Silent_p.S855S|PCDHA7_uc003lhq.2_Silent_p.S842S|PCDHA8_uc003lhs.2_Silent_p.S855S|PCDHA9_uc003lhu.2_Silent_p.S855S|PCDHA10_uc003lhw.2_Silent_p.S590S|PCDHA10_uc003lhx.2_Silent_p.S853S|PCDHA11_uc003lia.2_Silent_p.S854S|PCDHA12_uc003lic.2_Silent_p.S846S|PCDHA13_uc003lie.1_Silent_p.S855S|PCDHA13_uc003lif.2_Silent_p.S855S|PCDHAC1_uc003lih.2_Silent_p.S868S	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	912	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGAAGTGTCCCCTCCAGTCG	0.507													21	73					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431099	140431099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140431099G>A	uc003lik.1	+	1	121	c.44G>A	c.(43-45)GGA>GAA	p.G15E		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	15					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGCAAGTGGGATCTCTTCTC	0.498													48	14					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433458	140433458	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140433458G>A	uc003lik.1	+	1	2480	c.2403G>A	c.(2401-2403)AGG>AGA	p.R801R		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	801	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCTGATAGGAATAAGTCTC	0.438													52	28					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476483	140476483	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140476483C>T	uc003lil.2	+	1	2247	c.2109C>T	c.(2107-2109)TTC>TTT	p.F703F	PCDHB2_uc003lim.1_Silent_p.F364F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	703	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCGCTCTTCCTCTTCTCGG	0.706													109	52					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502263	140502263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140502263G>A	uc003lip.1	+	1	683	c.683G>A	c.(682-684)CGA>CAA	p.R228Q		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	228	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTCATGGTTCGAATCCTGATC	0.537													28	80					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503187	140503187	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140503187G>T	uc003lip.1	+	1	1607	c.1607G>T	c.(1606-1608)GGT>GTT	p.G536V		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	536	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAGACCGCGGTTCTCCGGCT	0.662													21	84					3.62473e-10	3.64925e-10	1	1	0
PCDHB5	26167	broad.mit.edu	37	5	140515225	140515225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140515225G>A	uc003liq.2	+	1	426	c.209G>A	c.(208-210)GGA>GAA	p.G70E		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	70	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATTACAAAGGAAACAAAGAG	0.507													27	91					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515917	140515917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140515917C>T	uc003liq.2	+	1	1118	c.901C>T	c.(901-903)CGC>TGC	p.R301C		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	301	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCAGAAATTCGCCTGAAAAG	0.438													17	100					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531930	140531930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140531930C>T	uc003lir.2	+	1	2092	c.2092C>T	c.(2092-2094)CTC>TTC	p.L698F	PCDHB6_uc011dah.1_Missense_Mutation_p.L562F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	698	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTGTCGTCGCTCTTCCTCTT	0.692													36	136					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552966	140552966	+	Missense_Mutation	SNP	G	A	A	rs146757937		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140552966G>A	uc003lit.2	+	1	724	c.550G>A	c.(550-552)GAT>AAT	p.D184N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	184	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAATGTCCATGATAGCGGGGA	0.478													12	47					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558064	140558064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140558064G>A	uc011dai.1	+	1	635	c.449G>A	c.(448-450)GGG>GAG	p.G150E	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	150	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTCCTCCTGGGACTGCGTTT	0.418													64	275					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572699	140572699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140572699C>T	uc003lix.2	+	1	748	c.574C>T	c.(574-576)CCA>TCA	p.P192S		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	192	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATGATATATCCAGAGCTAGT	0.507													164	63					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573497	140573497	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140573497C>T	uc003lix.2	+	1	1546	c.1372C>T	c.(1372-1374)CTG>TTG	p.L458L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	458	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCTACACCCTGTTCGTCCG	0.617													78	76					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574308	140574308	+	Missense_Mutation	SNP	C	T	T	rs149961535		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140574308C>T	uc003lix.2	+	1	2357	c.2183C>T	c.(2182-2184)TCG>TTG	p.S728L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	728	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCGCTGCTCGGTGCCCGAG	0.672													100	42					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604187	140604187	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140604187C>T	uc003ljb.2	+	1	1110	c.1110C>T	c.(1108-1110)ATC>ATT	p.I370I	PCDHB14_uc011dal.1_Silent_p.I217I	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	370	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTTTAGTATCCTAGACCAAG	0.413													59	32					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605096	140605096	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140605096C>T	uc003ljb.2	+	1	2019	c.2019C>T	c.(2017-2019)CTC>CTT	p.L673L	PCDHB14_uc011dal.1_Silent_p.L520L	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	673	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTGCCGCTCCCTGAGGCGG	0.692													97	47					0	0	1	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605445	140605445	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140605445C>T	uc003ljb.2	+	1	2368	c.2368C>T	c.(2368-2370)CGA>TGA	p.R790*	PCDHB14_uc011dal.1_Nonsense_Mutation_p.R637*	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	790	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAGAACTTTCGAAATAGCTT	0.343													37	19					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615632	140615632	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140615632C>T	uc003ljc.1	+	1	1695	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						CCCTCACCTCCCTGGTCTCCA	0.657													44	132					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625498	140625498	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140625498C>T	uc003lje.2	+	1	352	c.352C>T	c.(352-354)CGA>TGA	p.R118*		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	118	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAAGTATTTCGAGCTGAACT	0.433													21	78					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626087	140626087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140626087C>T	uc003lje.2	+	1	941	c.941C>T	c.(940-942)TCG>TTG	p.S314L		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	314	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAATGTCTTCGTATGATCTA	0.403													68	29					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730169	140730169	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140730169C>T	uc003ljo.1	+	1	342	c.342C>T	c.(340-342)TTC>TTT	p.F114F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.F114F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	114	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAATGTTTTCCACGTGGTTG	0.423													44	14					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740892	140740892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140740892C>T	uc003ljs.1	+	1	1190	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.S397F	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	397	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGAAATCTTCCTCAAAGAAC	0.473													22	81					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741318	140741318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140741318C>T	uc003ljs.1	+	1	1616	c.1616C>T	c.(1615-1617)TCG>TTG	p.S539L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.S539L|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	539	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCAGGGCTCGCCCGCGCTC	0.697													37	18					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746204	140746204	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140746204C>T	uc003lju.1	+	1	2307	c.2307C>T	c.(2305-2307)ATC>ATT	p.I769I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.I769I	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	769	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCACCTGATCTTTCCCCAGC	0.552													38	118					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751020	140751020	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140751020C>T	uc003ljw.1	+	1	1059	c.1059C>T	c.(1057-1059)TCC>TCT	p.S353S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.S353S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	353	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCTGAATCCCAACATATAC	0.418													8	34					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772560	140772560	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140772560G>A	uc003lkd.1	+	1	1078	c.180G>A	c.(178-180)GCG>GCA	p.A60A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.A60A	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	60	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAAGCTGGCGAAGCACGGAG	0.612													9	38					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772578	140772578	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140772578C>T	uc003lkd.1	+	1	1096	c.198C>T	c.(196-198)ATC>ATT	p.I66I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.I66I	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	66	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGTCCGTATCGTCTCCAGAG	0.617													39	12					0	0	1	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784826	140784826	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140784826C>T	uc003lkh.1	+	1	2307	c.2307C>T	c.(2305-2307)ATC>ATT	p.I769I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.I769I|PCDHGB6_uc003lki.1_5'Flank|PCDHGB6_uc003lkj.1_5'Flank	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	769	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCACCTGATCTTCCCCCAGC	0.502													74	40					0	0	1	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788367	140788367	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140788367C>T	uc003lkj.1	+	1	598	c.598C>T	c.(598-600)CTA>TTA	p.L200L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.L200L	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	200	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAAACTCCTAGACCGGGA	0.403													5	15					0	0	1	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798557	140798557	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140798557G>A	uc003lkn.1	+	1	1276	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Silent_p.G377G|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	377	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGACTCAGGGGAAAATGGGG	0.448													12	29					0	0	1	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140811979	140811979	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140811979C>T	uc003lkt.1	+	1	1822	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.F551F	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	551	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGCCTGTTCGTGCTGGACC	0.652													30	127					0	0	1	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812012	140812012	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:140812012C>T	uc003lkt.1	+	1	1855	c.1686C>T	c.(1684-1686)ATC>ATT	p.I562I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.I562I	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	562	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCGAGATCCTGTACCCCG	0.662													99	44					0	0	1	0	0
FCHSD1	89848	broad.mit.edu	37	5	141021112	141021112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:141021112G>A	uc003llk.2	-	20	2077	c.2026C>T	c.(2026-2028)CCG>TCG	p.P676S	FCHSD1_uc010jgg.2_Missense_Mutation_p.P359S|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	676	Pro-rich.								FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTAGCCGGCGGGGGAGGTGGT	0.582													4	12					0	0	1	0	0
GRXCR2	643226	broad.mit.edu	37	5	145239420	145239420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:145239420C>T	uc003lns.1	-	3	623	c.623G>A	c.(622-624)TGC>TAC	p.C208Y		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	208											0						GCACAGAGAGCAGGTGGCACT	0.552													40	21					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147011019	147011019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:147011019C>T	uc003loq.1	-	14	2214	c.1832G>A	c.(1831-1833)GGT>GAT	p.G611D	JAKMIP2_uc011dbx.1_Missense_Mutation_p.G569D|JAKMIP2_uc003lor.1_Missense_Mutation_p.G590D|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.G611D	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	611						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCACTCACACCATCTGAGAA	0.353													30	11					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147012282	147012282	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:147012282G>A	uc003loq.1	-	13	2119	c.1737C>T	c.(1735-1737)GAC>GAT	p.D579D	JAKMIP2_uc011dbx.1_Silent_p.D537D|JAKMIP2_uc003lor.1_Silent_p.D558D|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.D579D	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	579	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCATTCTGGTCTCTGGCGT	0.323													44	139					0	0	1	0	0
SPINK13	153218	broad.mit.edu	37	5	147665576	147665576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:147665576C>T	uc003lpc.2	+	5	312	c.250C>T	c.(250-252)CGT>TGT	p.R84C	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	84	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0						ATTTCATTATCGTATAAAATT	0.269													11	40					0	0	1	0	0
SLC26A2	1836	broad.mit.edu	37	5	149357662	149357662	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149357662C>T	uc003lrh.2	+	2	715	c.447C>T	c.(445-447)ATC>ATT	p.I149I		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	149	Helical; (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TTGCCAGCATCATTTATTTTC	0.458													58	25					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149441314	149441314	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149441314C>T	uc003lrl.2	-	11	1920	c.1725G>A	c.(1723-1725)TGG>TGA	p.W575*	CSF1R_uc011dcd.1_Nonsense_Mutation_p.W427*|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Nonsense_Mutation_p.W575*	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	575	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGGGGAACTCCCACTTCTCGT	0.567													23	82					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149513468	149513468	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149513468G>A	uc003lro.2	-	5	1204	c.735C>T	c.(733-735)TTC>TTT	p.F245F	PDGFRB_uc010jhd.2_Silent_p.F84F|PDGFRB_uc011dcg.1_Silent_p.F245F	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	245	Extracellular (Potential).|Ig-like C2-type 3.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ATGTCCACTCGAAGTTGACCA	0.572			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								34	22					0	0	1	0	0
CAMK2A	815	broad.mit.edu	37	5	149629796	149629796	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149629796T>C	uc003lru.2	-	11	1108	c.893A>G	c.(892-894)AAA>AGA	p.K298R	CAMK2A_uc003lrt.2_Missense_Mutation_p.K298R|CAMK2A_uc010jhe.2_Missense_Mutation_p.K278R	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	298	Calmodulin-binding.				interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TACCTTCAGTTTCCTCCTGGC	0.582													29	14					0	0	1	0	0
CAMK2A	815	broad.mit.edu	37	5	149631319	149631319	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149631319G>A	uc003lru.2	-	9	902	c.687C>T	c.(685-687)GCC>GCT	p.A229A	CAMK2A_uc003lrt.2_Silent_p.A229A|CAMK2A_uc010jhe.2_Silent_p.A209A|CAMK2A_uc010jhf.1_Missense_Mutation_p.P67L	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	229	Protein kinase.				interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCACATCATAGGCGCCGGCTT	0.587													5	13					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149681730	149681730	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:149681730G>A	uc003lrv.2	-	1	796	c.207C>T	c.(205-207)ATC>ATT	p.I69I		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	69						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TAGGGGTCTCGATATCTGAAC	0.622													5	28					0	0	1	0	0
RBM22	55696	broad.mit.edu	37	5	150072457	150072457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:150072457C>T	uc003lst.2	-	10	1254	c.1132G>A	c.(1132-1134)GGT>AGT	p.G378S		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	378	Pro-rich.				protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGAAGTTACCTGGGGGTGGG	0.517													30	95					0	0	1	0	0
DCTN4	51164	broad.mit.edu	37	5	150112988	150112988	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:150112988A>G	uc003lsv.2	-	5	581	c.479T>C	c.(478-480)GTT>GCT	p.V160A	DCTN4_uc003lsu.2_Missense_Mutation_p.V103A|DCTN4_uc010jhi.2_Missense_Mutation_p.V160A|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_Missense_Mutation_p.V103A	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	160	Potential.					centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATCTCGCTCAACCTTCTCTTT	0.388													22	26					0	0	1	0	0
ZNF300	91975	broad.mit.edu	37	5	150275724	150275724	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:150275724C>T	uc003lsy.1	-	6	1344	c.1077G>A	c.(1075-1077)GGG>GGA	p.G359G	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	359	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGAAGGCTTTCCCGCATTCAC	0.428													7	49					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151784640	151784640	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:151784640C>T	uc003luv.2	-	1	201	c.35G>A	c.(34-36)TGG>TAG	p.W12*		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	12	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CTGGTAGATCCAGGAAGCATT	0.502													26	93					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153085303	153085303	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:153085303A>C	uc003lva.3	+	11	1864	c.1499A>C	c.(1498-1500)GAA>GCA	p.E500A	GRIA1_uc003luy.3_Missense_Mutation_p.E500A|GRIA1_uc003luz.3_Missense_Mutation_p.E405A|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.E420A|GRIA1_uc011dcx.1_Missense_Mutation_p.E431A|GRIA1_uc011dcy.1_Missense_Mutation_p.E510A|GRIA1_uc011dcz.1_Missense_Mutation_p.E510A|GRIA1_uc010jia.1_Missense_Mutation_p.E480A	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	500	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTGGTCCGGGAAGAAGTTATA	0.393													35	16					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153149864	153149864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:153149864C>T	uc003lva.3	+	13	2524	c.2159C>T	c.(2158-2160)TCC>TTC	p.S720F	GRIA1_uc003luy.3_Missense_Mutation_p.S720F|GRIA1_uc003luz.3_Missense_Mutation_p.S625F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.S640F|GRIA1_uc011dcx.1_Missense_Mutation_p.S651F|GRIA1_uc011dcy.1_Missense_Mutation_p.S730F|GRIA1_uc011dcz.1_Missense_Mutation_p.S730F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	720	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTCCTGGAGTCCACCATGAAT	0.502													15	42					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153190618	153190618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:153190618G>A	uc003lva.3	+	16	2919	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	GRIA1_uc003luy.3_Missense_Mutation_p.E852K|GRIA1_uc003luz.3_Missense_Mutation_p.E757K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.E772K|GRIA1_uc011dcx.1_Missense_Mutation_p.E783K|GRIA1_uc011dcy.1_Missense_Mutation_p.E862K|GRIA1_uc011dcz.1_Missense_Mutation_p.E862K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	852	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ATCCATCAACGAAGCCATACG	0.587													52	20					0	0	1	0	0
LARP1	23367	broad.mit.edu	37	5	154182949	154182949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:154182949C>T	uc003lvp.2	+	12	2638	c.2209C>T	c.(2209-2211)CCT>TCT	p.P737S	LARP1_uc003lvo.2_Missense_Mutation_p.P660S|LARP1_uc010jie.1_Missense_Mutation_p.P532S	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	737							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GGAAGTTCCTCCTGGGCCACC	0.567													4	36					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394051	154394051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:154394051G>A	uc010jih.1	+	1	792	c.632G>A	c.(631-633)CGA>CAA	p.R211Q		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	211	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CAGTCGTCCCGATCTCATGCC	0.468													19	79					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394629	154394629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:154394629C>T	uc010jih.1	+	1	1370	c.1210C>T	c.(1210-1212)CGT>TGT	p.R404C		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	404	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAAATTAAGTCGTTGTCTGAG	0.453													72	50					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816274	156816274	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:156816274C>T	uc003lwq.2	+	31	3423	c.3285C>T	c.(3283-3285)ATC>ATT	p.I1095I	CYFIP2_uc011ddn.1_Silent_p.I1069I|CYFIP2_uc011ddo.1_Silent_p.I899I|CYFIP2_uc003lwr.2_Silent_p.I1095I|CYFIP2_uc003lws.2_Silent_p.I1095I|CYFIP2_uc003lwt.2_Silent_p.I998I|CYFIP2_uc011ddp.1_Silent_p.I829I|CYFIP2_uc003lwv.2_Silent_p.I50I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1120					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCGAGGTCATCCTGACCCGCA	0.617													76	253					0	0	1	0	0
PWWP2A	114825	broad.mit.edu	37	5	159520835	159520835	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:159520835G>A	uc011ded.1	-	2	879	c.822C>T	c.(820-822)CCC>CCT	p.P274P	PWWP2A_uc003lxv.3_Silent_p.P274P|PWWP2A_uc011dec.1_Silent_p.P274P	NM_001130864	NP_001124336	Q96N64	PWP2A_HUMAN	PWWP domain containing 2A isoform b	274	Pro-rich.										0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TAAACAAAGGGGGAGGATAAG	0.498													114	53					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160042920	160042920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:160042920C>T	uc003lym.1	-	17	3425	c.2578G>A	c.(2578-2580)GAG>AAG	p.E860K	ATP10B_uc010jit.1_Missense_Mutation_p.E177K|ATP10B_uc003lyn.2_Missense_Mutation_p.E418K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	860	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGGATGCCTCAGCCTCACGC	0.478													10	41					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160757961	160757962	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:160757961_160757962GG>AA	uc003lys.1	-	9	1223_1224	c.1005_1006CC>TT	c.(1003-1008)CCCCAA>CCTTAA	p.Q336*	GABRB2_uc011deh.1_Nonsense_Mutation_p.Q175*|GABRB2_uc003lyr.1_Nonsense_Mutation_p.Q336*|GABRB2_uc003lyt.1_Nonsense_Mutation_p.Q336*|GABRB2_uc010jiu.1_Nonsense_Mutation_p.Q273*	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	336	Cytoplasmic (Probable).			Q -> L (in Ref. 4; BAF82419).	gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTTTGGCGTTGGGGCCCCCTCC	0.51													24	81					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160763709	160763709	+	Silent	SNP	C	T	T	rs138163747	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:160763709C>T	uc003lys.1	-	7	827	c.609G>A	c.(607-609)ACG>ACA	p.T203T	GABRB2_uc011deh.1_Silent_p.T42T|GABRB2_uc003lyr.1_Silent_p.T203T|GABRB2_uc003lyt.1_Silent_p.T203T|GABRB2_uc010jiu.1_Silent_p.T140T	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	203	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTTCAATTTTCGTTACTCCTG	0.333													13	57					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161119189	161119189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:161119189G>A	uc003lyu.2	+	8	1407	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	GABRA6_uc003lyv.2_Missense_Mutation_p.E128K	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	357	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGAACCTTTGGAAGCTGAGAT	0.398										TCGA Ovarian(5;0.080)			41	19					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161128747	161128747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:161128747G>A	uc003lyu.2	+	9	1668	c.1330G>A	c.(1330-1332)GAT>AAT	p.D444N	GABRA6_uc003lyv.2_Missense_Mutation_p.D215N	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	444					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCTTTCCAAAGATACAATGGA	0.383										TCGA Ovarian(5;0.080)			27	18					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161324264	161324264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:161324264G>A	uc010jiw.2	+	11	1675	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	GABRA1_uc010jix.2_Missense_Mutation_p.E403K|GABRA1_uc010jiy.2_Missense_Mutation_p.E403K|GABRA1_uc003lyx.3_Missense_Mutation_p.E403K|GABRA1_uc010jiz.2_Missense_Mutation_p.E403K|GABRA1_uc010jja.2_Missense_Mutation_p.E403K|GABRA1_uc010jjb.2_Missense_Mutation_p.E403K	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	403	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GGTCAAGCCCGAAACAAAACC	0.473													70	31					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167653194	167653194	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:167653194A>G	uc010jjd.2	+	24	5183	c.5183A>G	c.(5182-5184)AAC>AGC	p.N1728S	ODZ2_uc003lzr.3_Missense_Mutation_p.N1498S|ODZ2_uc003lzt.3_Missense_Mutation_p.N1101S|ODZ2_uc010jje.2_Missense_Mutation_p.N992S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GACATTGAGAACTCCAACCGT	0.537													14	7					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168093498	168093498	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:168093498C>T	uc003mab.2	-	36	4953	c.4533G>A	c.(4531-4533)GTG>GTA	p.V1511V	SLIT3_uc010jjg.2_Silent_p.V1518V	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1511	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTGTCTCTCCACCTCTTCTA	0.642													8	22					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168096985	168096985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:168096985C>T	uc003mab.2	-	35	4559	c.4139G>A	c.(4138-4140)GGA>GAA	p.G1380E	SLIT3_uc010jjg.2_Missense_Mutation_p.G1387E	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1380	EGF-like 8.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACACATTTTCCATGGTGGCA	0.567													10	22					0	0	1	0	0
KCNIP1	30820	broad.mit.edu	37	5	170147385	170147385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:170147385C>T	uc003mas.2	+	4	809	c.280C>T	c.(280-282)CCT>TCT	p.P94S	KCNIP1_uc003map.2_Missense_Mutation_p.P92S|KCNIP1_uc003mat.2_Missense_Mutation_p.P83S|KCNIP1_uc010jjp.2_Missense_Mutation_p.P55S|KCNIP1_uc010jjq.2_Missense_Mutation_p.P83S	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	94	EF-hand 1; degenerate.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCAGTTTTTCCCTCATGGAGG	0.532													5	33					0	0	1	0	0
RANBP17	64901	broad.mit.edu	37	5	170667979	170667979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:170667979C>T	uc003mba.2	+	23	2486	c.2470C>T	c.(2470-2472)CCA>TCA	p.P824S	RANBP17_uc003mbb.2_Missense_Mutation_p.P149S|RANBP17_uc003mbd.2_Missense_Mutation_p.P187S|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	824					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCAGATTTATCCAATGAAACT	0.418			T	TRD@	ALL								114	39					0	0	1	0	0
TLX3	30012	broad.mit.edu	37	5	170736468	170736468	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:170736468C>T	uc003mbf.2	+	1	181	c.99C>T	c.(97-99)CCC>CCT	p.P33P	uc003mbe.1_5'Flank	NM_021025	NP_066305	O43711	TLX3_HUMAN	T-cell leukemia homeobox 3	33						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ACAGCGCACCCGCCCCGCGGG	0.756			T	BCL11B	T-ALL								12	6					0	0	1	0	0
FBXW11	23291	broad.mit.edu	37	5	171299925	171299925	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:171299925G>A	uc003mbm.1	-	9	1599	c.1228C>T	c.(1228-1230)CAG>TAG	p.Q410*	FBXW11_uc011dey.1_Nonsense_Mutation_p.Q378*|FBXW11_uc003mbl.1_Nonsense_Mutation_p.Q397*|FBXW11_uc003mbn.1_Nonsense_Mutation_p.Q376*	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	410	WD 5.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCCCTGTACTGGAGACAGGCA	0.453													13	35					0	0	1	0	0
STC2	8614	broad.mit.edu	37	5	172745119	172745119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:172745119C>T	uc003mco.1	-	4	1950	c.640G>A	c.(640-642)GCC>ACC	p.A214T	STC2_uc003mcn.1_Missense_Mutation_p.A129T	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	214					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TTCTGGATGGCCGAGGTGCAG	0.652													40	22					0	0	1	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026556	176026556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:176026556G>A	uc003meo.1	-	2	455	c.280C>T	c.(280-282)CCC>TCC	p.P94S		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	94						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTTGGGGAGGGGCAGGCCAGG	0.647													62	15					0	0	1	0	0
RGS14	10636	broad.mit.edu	37	5	176799013	176799013	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:176799013G>A	uc003mgf.2	+	15	1820	c.1638G>A	c.(1636-1638)CAG>CAA	p.Q546Q	RGS14_uc003mgh.2_Silent_p.Q394Q|RGS14_uc003mgi.2_Silent_p.Q317Q|RGS14_uc003mgj.2_RNA	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14	546					chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCCACCACAGACCAAATCAG	0.622													109	67					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176823738	176823738	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:176823738C>T	uc003mgk.3	+	11	1280	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	393	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTGCAGACTTCCCTGCCCCCT	0.647													13	41					0	0	1	0	0
FAM193B	54540	broad.mit.edu	37	5	176958511	176958511	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:176958511G>A	uc003mhs.3	-	7	2537	c.948C>T	c.(946-948)GCC>GCT	p.A316A	FAM193B_uc003mht.2_5'UTR|FAM193B_uc003mhu.2_Intron|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						GACTCGTCGGGGCAGCGGGTG	0.672													5	4					0	0	1	0	0
N4BP3	23138	broad.mit.edu	37	5	177548666	177548666	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:177548666C>T	uc003mik.1	+	5	1546	c.1299C>T	c.(1297-1299)GCC>GCT	p.A433A	N4BP3_uc003mil.1_Silent_p.A102A	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	433	Potential.					cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGAGCAGGCCCCTCGGGAGG	0.677													39	15					0	0	1	0	0
GMCL1L	64396	broad.mit.edu	37	5	177613459	177613459	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:177613459T>C	uc003mit.1	-	1	975	c.842A>G	c.(841-843)AAG>AGG	p.K281R		NR_003281				SubName: Full=Germ cell-less homolog 1 (Drosophila); SubName: Full=Putative uncharacterized protein FLJ13057;												0						GAACATCCACTTTTTTAGAGT	0.353													113	38					0	0	1	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139785	178139785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:178139785G>A	uc003mjj.2	-	5	1292	c.1094C>T	c.(1093-1095)TCT>TTT	p.S365F		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	365	C2H2-type 5.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		GGATGAGCTAGACTTAAAGGT	0.418													33	18					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392009	178392009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:178392009G>A	uc003mjo.1	+	5	875	c.604G>A	c.(604-606)GAA>AAA	p.E202K	ZNF454_uc010jkz.1_Missense_Mutation_p.E202K	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		AATTCATAATGAAAAAAATGC	0.348													23	20					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178419001	178419002	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:178419001_178419002GG>AA	uc003mjr.2	-	2	766_767	c.587_588CC>TT	c.(586-588)CCC>CTT	p.P196L	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	196	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGTAGGAGTCGGGTGGCACCAC	0.624													5	38					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178541284	178541284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:178541284C>T	uc003mjw.2	-	22	3220	c.3220G>A	c.(3220-3222)GAA>AAA	p.E1074K	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1074	PLAC.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GACAAGACTTCCATCCTACAG	0.493													24	17					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178580547	178580547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:178580547G>A	uc003mjw.2	-	9	1460	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F	ADAMTS2_uc011dgm.1_Missense_Mutation_p.S487F	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	487	Disintegrin.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CTCGTTCATGGAGTAGTGCAG	0.672													6	32					0	0	1	0	0
RUFY1	80230	broad.mit.edu	37	5	179018724	179018724	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:179018724G>A	uc003mka.1	+	10	1227	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	RUFY1_uc003mkb.1_Silent_p.E301E|RUFY1_uc003mkc.1_Silent_p.E301E|RUFY1_uc003mkd.1_Silent_p.E11E	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	409	Potential.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCTAAAAGAGGAGAAGAAAG	0.428										HNSCC(44;0.11)			18	48					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179545842	179545842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:179545842G>A	uc003mlq.2	-	8	1229	c.932C>T	c.(931-933)TCC>TTC	p.S311F	RASGEF1C_uc003mlr.2_Missense_Mutation_p.S311F|RASGEF1C_uc003mlp.3_Missense_Mutation_p.S160F	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	311	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTCAGCCTGGAGACAGGGCT	0.632													42	31					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180043377	180043377	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:180043377C>A	uc003mma.3	-	23	3288	c.3209G>T	c.(3208-3210)CGC>CTC	p.R1070L	FLT4_uc003mlz.3_Missense_Mutation_p.R1070L	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1070	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACTGCCCTTGCGGACGTAGTC	0.607									Congenital_Hereditary_Lymphedema				38	16					4.62619e-21	4.68387e-21	1	1	0
FLT4	2324	broad.mit.edu	37	5	180056959	180056959	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:180056959G>A	uc003mma.3	-	5	739	c.660C>T	c.(658-660)TTC>TTT	p.F220F	FLT4_uc003mlz.3_Silent_p.F220F|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.F220F|FLT4_uc011dgz.1_Silent_p.F220F|FLT4_uc011dha.1_Missense_Mutation_p.S204F	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	220	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGTGCACCAGGAAGGGGTTGG	0.642									Congenital_Hereditary_Lymphedema				9	30					0	0	1	0	0
OR2V2	285659	broad.mit.edu	37	5	180582855	180582855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:180582855G>A	uc011dhj.1	+	1	913	c.913G>A	c.(913-915)GGG>AGG	p.G305R		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACTGAGGAAGGGGCTGGACCG	0.448													38	12					0	0	1	0	0
CAGE1	285782	broad.mit.edu	37	6	7373615	7373615	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:7373615G>A	uc003mxi.2	-	4	1750	c.1029C>T	c.(1027-1029)GCC>GCT	p.A343A	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Silent_p.A234A|CAGE1_uc003mxk.1_Silent_p.A234A	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	479	Potential.										0	Ovarian(93;0.0418)					CTTGTTCTTGGGCCTCTTTTT	0.403													10	36					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7579756	7579756	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:7579756C>T	uc003mxp.1	+	23	3612	c.3333C>T	c.(3331-3333)ATC>ATT	p.I1111I	DSP_uc003mxq.1_Silent_p.I1111I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1111	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATGAGAAGATCACCCGACTGA	0.438													7	54					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581377	7581377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:7581377G>A	uc003mxp.1	+	23	5233	c.4954G>A	c.(4954-4956)GAA>AAA	p.E1652K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1652	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGGACCCAGGAAGAGCTGAG	0.557													26	135					0	0	1	0	0
BMP6	654	broad.mit.edu	37	6	7727811	7727811	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:7727811T>C	uc003mxu.3	+	1	801	c.623T>C	c.(622-624)TTC>TCC	p.F208S		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	208					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					GACAGCGCCTTCCTCAACGAC	0.647													9	19					0	0	1	0	0
MAK	4117	broad.mit.edu	37	6	10830879	10830879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:10830879C>T	uc003mzl.2	-	1	232	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.M1I|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	1					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				TGTATCGGTTCATCTTGGAAA	0.418													16	90					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10876690	10876690	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:10876690C>T	uc003mzn.3	-	3	516	c.444G>A	c.(442-444)GCG>GCA	p.A148A	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	148	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GAAAAAAGATCGCGTTGCCAT	0.498													9	71					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10877426	10877426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:10877426G>A	uc003mzn.3	-	2	362	c.290C>T	c.(289-291)TCC>TTC	p.S97F	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	97	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				CTGCAGGCGGGAACCGTCGGG	0.612													23	105					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12120946	12120946	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:12120946T>C	uc003nac.2	+	4	1097	c.918T>C	c.(916-918)GGT>GGC	p.G306G	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	306					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GGTGTTCAGGTTTCACAGGAT	0.413													46	29					0	0	1	0	0
EDN1	1906	broad.mit.edu	37	6	12296207	12296207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:12296207G>A	uc003nae.3	+	5	880	c.546G>A	c.(544-546)ATG>ATA	p.M182I	EDN1_uc003nad.2_3'UTR|EDN1_uc003naf.3_Missense_Mutation_p.M181I	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	182					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				CGGAGACCATGAGAAACAGCG	0.403													28	153					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16306643	16306643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:16306643G>A	uc003nbt.2	-	9	3336	c.2365C>T	c.(2365-2367)CCA>TCA	p.P789S	ATXN1_uc010jpi.2_Missense_Mutation_p.P789S|ATXN1_uc010jpj.1_RNA	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	789	Interaction with USP7.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				GTCAAAGGTGGTTCGTCTTCT	0.537													19	87					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17541264	17541264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:17541264G>A	uc003ncb.2	+	9	1130	c.887G>A	c.(886-888)GGA>GAA	p.G296E	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.G270E|CAP2_uc011djb.1_Missense_Mutation_p.G232E|CAP2_uc011djc.1_Missense_Mutation_p.G184E|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	296					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			CGGGCTCAAGGAGGGCAAACT	0.473													61	108					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17855836	17855836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:17855836G>A	uc003ncg.3	-	6	431	c.326C>T	c.(325-327)TCC>TTC	p.S109F	KIF13A_uc003ncf.2_Missense_Mutation_p.S109F|KIF13A_uc003nch.3_Missense_Mutation_p.S109F|KIF13A_uc003nci.3_Missense_Mutation_p.S109F	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	109	ATP (By similarity).|Kinesin-motor.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			CATGGAAAAGGATTTTCCCGA	0.463													6	45					0	0	1	0	0
CDKAL1	54901	broad.mit.edu	37	6	20739777	20739777	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:20739777C>T	uc003ndc.1	+	6	573	c.399C>T	c.(397-399)ATC>ATT	p.I133I	CDKAL1_uc003ndd.1_Silent_p.I133I|CDKAL1_uc003nde.1_Silent_p.I63I	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	133	MTTase N-terminal.				RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			ACAAGAAAATCGTACTGGCTG	0.433													85	190					0	0	1	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726628	25726628	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:25726628C>G	uc003nfc.2	-	1	163	c.128G>C	c.(127-129)CGG>CCG	p.R43P	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	43					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGCCCCTATCCGCTCTGCATA	0.527													12	50					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25799137	25799137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:25799137G>A	uc003nfh.3	-	12	1396	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.S425F|SLC17A1_uc010jqc.1_Missense_Mutation_p.S371F	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	427					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAACCAGGCGGATTCCGGATC	0.328													5	45					0	0	1	0	0
SLC17A2	10246	broad.mit.edu	37	6	25926017	25926017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:25926017C>T	uc011dkb.1	-	1	91	c.8G>A	c.(7-9)GGG>GAG	p.G3E	SLC17A2_uc011dkc.1_Missense_Mutation_p.G3E|SLC17A2_uc003nfl.2_Missense_Mutation_p.G3E			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	3					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GGCAGGCTTCCCGTCCATTTA	0.458													42	237					0	0	1	0	0
HIST1H2AB	8335	broad.mit.edu	37	6	26033692	26033692	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26033692G>A	uc003nft.1	-	1	105	c.105C>T	c.(103-105)CTC>CTT	p.L35L	HIST1H3B_uc003nfs.1_5'Flank	NM_003513	NP_003504	P04908	H2A1B_HUMAN	histone cluster 1, H2ab	35					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGCCTTTGCGGAGCAGGCGGT	0.652													18	64					0	0	1	0	0
HIST1H3D	8351	broad.mit.edu	37	6	26197081	26197082	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26197081_26197082CC>TT	uc003ngv.2	-	2	794_795	c.397_398GG>AA	c.(397-399)GGG>AAG	p.G133K	HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521	P68431	H31_HUMAN	histone cluster 1, H3d	133					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				CGCCCTCTCCCCACGAATGCGG	0.5													15	54					0	0	1	0	0
HIST1H2AE	3012	broad.mit.edu	37	6	26217281	26217281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26217281C>T	uc003nha.1	+	1	134	c.79C>T	c.(79-81)CCA>TCA	p.P27S	HIST1H2BG_uc003ngz.2_5'Flank	NM_021052	NP_066390	P04908	H2A1B_HUMAN	histone cluster 1, H2ae	27					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2		all_hematologic(11;0.196)				TCTTCAGTTTCCAGTTGGCCG	0.587													12	53					0	0	1	0	0
HIST1H4F	8361	broad.mit.edu	37	6	26240828	26240828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26240828C>T	uc003nhe.1	+	1	175	c.175C>T	c.(175-177)CTT>TTT	p.L59F		NM_003540	NP_003531	P62805	H4_HUMAN	histone cluster 1, H4f	59					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				CCGCGGTGTTCTTAAGGTGTT	0.572													12	25					0	0	1	0	0
HIST1H2BI	8346	broad.mit.edu	37	6	26273236	26273236	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26273236G>A	uc003nhk.2	+	1	33	c.33G>A	c.(31-33)CCG>CCA	p.P11P	HIST1H3G_uc003nhi.2_5'Flank	NM_003525	NP_003516	P62807	H2B1C_HUMAN	histone cluster 1, H2bi	11					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						CTCCCGCCCCGAAGAAGGGCT	0.557													32	135					0	0	1	0	0
BTN1A1	696	broad.mit.edu	37	6	26502023	26502023	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:26502023G>A	uc003nif.3	+	2	305	c.285G>A	c.(283-285)GCG>GCA	p.A95A		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	95	Extracellular (Potential).|Ig-like V-type 1.					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GCGGGCGGGCGACGCTGGTCC	0.662													12	39					0	0	1	0	0
ZNF391	346157	broad.mit.edu	37	6	27368071	27368071	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:27368071G>A	uc003njf.1	+	3	441	c.-77_splice	c.e3-1			NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						ATGTCTTTCAGATAGGGGGAT	0.383													19	32					0	0	1	0	0
ZNF184	7738	broad.mit.edu	37	6	27419137	27419137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:27419137G>A	uc003njj.2	-	5	3012	c.2201C>T	c.(2200-2202)TCC>TTC	p.S734F	ZNF184_uc010jqv.2_Missense_Mutation_p.S734F|ZNF184_uc003nji.2_Missense_Mutation_p.S734F	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	734	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATATCTGAAGGATTTTCCACA	0.383													56	104					0	0	1	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27834834	27834834	+	Silent	SNP	C	T	T	rs143393068	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:27834834C>T	uc003njx.2	-	1	526	c.474G>A	c.(472-474)AAG>AAA	p.K158K		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	158					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						GCTTCTTCGCCTTCTTCGGAG	0.607													125	101					0	0	1	0	0
ZNF165	7718	broad.mit.edu	37	6	28057075	28057075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28057075G>A	uc003nkg.2	+	5	2369	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	ZNF165_uc003nkh.2_Missense_Mutation_p.E429K|ZNF165_uc003nki.3_Missense_Mutation_p.E429K|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	429	C2H2-type 5.				viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAAACCCTACGAGTGTAGTGA	0.448													8	45					0	0	1	0	0
ZNF187	7741	broad.mit.edu	37	6	28244598	28244598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28244598C>T	uc011dld.1	+	5	1432	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y	ZNF187_uc011dlc.1_Missense_Mutation_p.H389Y|ZNF187_uc003nku.3_Missense_Mutation_p.H254Y|ZNF187_uc003nkw.3_Missense_Mutation_p.H235Y|ZNF187_uc011dle.1_Missense_Mutation_p.H235Y|ZNF187_uc011dlf.1_Missense_Mutation_p.H180Y|ZNF187_uc011dlg.1_Missense_Mutation_p.H235Y	NM_001111039	NP_001104509	Q16670	ZN187_HUMAN	zinc finger protein 187 isoform b	388	C2H2-type 5.				viral reproduction	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCAGAGAATCCATAGTCACTC	0.458													16	46					0	0	1	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28333681	28333681	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28333681C>T	uc003nle.3	+	6	1452	c.1236C>T	c.(1234-1236)AGC>AGT	p.S412S	ZKSCAN3_uc010jrc.2_Silent_p.S412S|ZKSCAN3_uc003nlf.3_Silent_p.S264S|uc010jrd.2_5'Flank	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	412	C2H2-type 4.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AGAGCTGCAGCCTCCTTGAAC	0.507													10	54					0	0	1	0	0
ZSCAN23	222696	broad.mit.edu	37	6	28403698	28403698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28403698C>T	uc003nli.3	-	2	527	c.346G>A	c.(346-348)GGA>AGA	p.G116R	ZSCAN23_uc003nlh.2_RNA|ZSCAN23_uc010jrf.1_Intron|ZSCAN23_uc011dli.1_Missense_Mutation_p.G116R	NM_001012455	NP_001012458	Q3MJ62	ZSC23_HUMAN	zinc finger protein 390	116	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCCTCCTCTCCACTCACAGGA	0.562													3	30					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28472261	28472261	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28472261C>T	uc011dlj.1	-	6	524	c.474G>A	c.(472-474)CCG>CCA	p.P158P	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	158					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GATCAGAGGTCGGAGGGCAGG	0.443													12	54					0	0	1	0	0
GPX5	2880	broad.mit.edu	37	6	28499606	28499606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28499606G>A	uc003nll.2	+	3	295	c.293G>A	c.(292-294)GGC>GAC	p.G98D	GPX5_uc003nlm.2_Intron|GPX5_uc003nln.2_Intron	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	98					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	GTTGTGTTGGGCTTTCCCTGC	0.473													56	234					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540518	28540518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:28540518G>A	uc003nlo.2	-	4	3766	c.3148C>T	c.(3148-3150)CAT>TAT	p.H1050Y		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1050					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						agttgcttatgatcagcttcc	0													42	34					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012134	29012134	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29012134G>A	uc003nlw.2	-	1	819	c.819C>T	c.(817-819)TTC>TTT	p.F273F		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGAGGGTGAGGAACTTGCCCT	0.443													23	32					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012249	29012249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29012249C>T	uc003nlw.2	-	1	704	c.704G>A	c.(703-705)CGA>CAA	p.R235Q		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CATTGCTTTTCGCTGGCTTGC	0.408													21	97					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012515	29012515	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29012515G>A	uc003nlw.2	-	1	438	c.438C>T	c.(436-438)ATC>ATT	p.I146I		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCCAGATCATGATAATCATCT	0.373													12	52					0	0	1	0	0
OR2B3	442184	broad.mit.edu	37	6	29054686	29054686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29054686G>A	uc003nlx.2	-	1	405	c.340C>T	c.(340-342)CTT>TTT	p.L114F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						ACAGCCAGAAGGAGACACTCT	0.468													43	51					0	0	1	0	0
OR2B3	442184	broad.mit.edu	37	6	29054788	29054788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29054788G>A	uc003nlx.2	-	1	303	c.238C>T	c.(238-240)CAT>TAT	p.H80Y		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						ACCAACATATGAGGGACTGTA	0.448													16	81					0	0	1	0	0
OR2J3	442186	broad.mit.edu	37	6	29079863	29079863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29079863C>T	uc011dll.1	+	1	196	c.196C>T	c.(196-198)CTT>TTT	p.L66F		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTACTTCTTCCTTTCAAACCT	0.473													73	148					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141494	29141494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29141494C>T	uc011dlm.1	+	1	184	c.82C>T	c.(82-84)CTC>TTC	p.L28F		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAAGTAGTTCTCTTTGTGGT	0.383													56	109					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141978	29141978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29141978C>T	uc011dlm.1	+	1	668	c.566C>T	c.(565-567)TCA>TTA	p.S189L		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGCGTTTATCATGTGTTGAC	0.453													37	187					0	0	1	0	0
OR5V1	81696	broad.mit.edu	37	6	29323235	29323235	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29323235G>A	uc011dlo.1	-	1	820	c.738C>T	c.(736-738)GCC>GCT	p.A246A		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						GAAAGACAATGGCCAGGTGGG	0.443													26	60					0	0	1	0	0
MAS1L	116511	broad.mit.edu	37	6	29455668	29455668	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29455668C>T	uc011dlq.1	-	1	12	c.12G>A	c.(10-12)GGG>GGA	p.G4G		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	4	Extracellular (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						AGCAAATTTTCCCCCAGACCA	0.562													29	27					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29555902	29555902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29555902C>T	uc003nmr.1	+	1	220	c.181C>T	c.(181-183)CTC>TTC	p.L61F	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	61	Helical; Name=2; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTACTTTTTCCTCTCCAACCT	0.532													21	110					0	0	1	0	0
GABBR1	2550	broad.mit.edu	37	6	29599287	29599287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29599287C>T	uc003nmt.3	-	3	511	c.175G>A	c.(175-177)GTG>ATG	p.V59M	GABBR1_uc003nmu.3_Missense_Mutation_p.V59M|GABBR1_uc011dlr.1_Translation_Start_Site|GABBR1_uc011dls.1_Missense_Mutation_p.V59M	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	59	Sushi 1.|Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	TCATAGTCCACTGGCAGGAAG	0.617													32	170					0	0	1	0	0
MOG	4340	broad.mit.edu	37	6	29638061	29638061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29638061C>T	uc003nnf.2	+	6	774	c.596C>T	c.(595-597)CCC>CTC	p.P199L	MOG_uc003nmy.1_Missense_Mutation_p.P199L|MOG_uc003nmz.2_3'UTR|MOG_uc011dlt.1_Missense_Mutation_p.P129L|MOG_uc003nna.2_Missense_Mutation_p.P83L|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_3'UTR|MOG_uc003nne.2_Missense_Mutation_p.P199L|MOG_uc003nng.2_Intron|MOG_uc003nnh.2_Intron|MOG_uc003nni.2_Intron|MOG_uc003nnj.2_Intron|MOG_uc003nnk.2_Intron	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	199	Cytoplasmic (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						AATTCAGATCCCCACTTTCTG	0.493													31	121					0	0	1	0	0
HLA-G	3135	broad.mit.edu	37	6	29796516	29796516	+	Silent	SNP	G	A	A	rs113386443		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:29796516G>A	uc003nnw.2	+	4	718	c.540G>A	c.(538-540)AGG>AGA	p.R180R	HLA-G_uc011dmb.1_Silent_p.R152R|HLA-G_uc003raj.3_Silent_p.R185R|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	180	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						CTGAACAAAGGAGAGCCTACC	0.652													55	40					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30122033	30122033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:30122033C>T	uc003npo.3	-	7	1235	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N	TRIM10_uc003npn.2_Intron	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	387	B30.2/SPRY.					cytoplasm	zinc ion binding				0						CGCTGCACATCCTCGCTCACC	0.672													8	29					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30126277	30126277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:30126277C>T	uc003npo.3	-	3	731	c.655G>A	c.(655-657)GAT>AAT	p.D219N	TRIM10_uc003npn.2_Missense_Mutation_p.D219N	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	219						cytoplasm	zinc ion binding				0						TCAAATTCATCCCGTTGCCTC	0.502													133	246					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30863263	30863263	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:30863263C>T	uc003nrr.2	+	13	1855	c.1596C>T	c.(1594-1596)CCC>CCT	p.P532P	DDR1_uc010jse.2_Intron|DDR1_uc003nrq.2_Intron|DDR1_uc003nrs.2_Silent_p.P532P|DDR1_uc003nrt.2_Intron|DDR1_uc011dms.1_Intron|DDR1_uc003nru.2_Intron|DDR1_uc003nrv.2_Silent_p.P532P|DDR1_uc003nrw.1_Missense_Mutation_p.P304L|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	532	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCCCCACACCCGCCTGGGCCA	0.682													24	119					0	0	1	0	0
CDSN	1041	broad.mit.edu	37	6	31084315	31084315	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31084315G>A	uc003nsm.1	-	2	1104	c.1077C>T	c.(1075-1077)AGC>AGT	p.S359S	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	359	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						CTGCCGACTGGCTGGGGATGA	0.627													8	30					0	0	1	0	0
AIF1	199	broad.mit.edu	37	6	31584596	31584596	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31584596C>T	uc003nuy.2	+	6	437	c.363C>T	c.(361-363)ATC>ATT	p.I121I	AIF1_uc010jsy.2_3'UTR|AIF1_uc003nva.2_Silent_p.I67I	NM_001623	NP_001614	P55008	AIF1_HUMAN	allograft inflammatory factor 1 isoform 3	121					actin filament bundle assembly|cell cycle arrest|inflammatory response|negative regulation of cell proliferation	nucleus|ruffle membrane	actin filament binding|calcium ion binding			ovary(1)	1						CAACCAGGATCCTGATGTATG	0.498													19	60					0	0	1	0	0
BAT4	7918	broad.mit.edu	37	6	31630286	31630286	+	Silent	SNP	G	A	A	rs113571875		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31630286G>A	uc003nvn.2	-	3	1473	c.828C>T	c.(826-828)CCC>CCT	p.P276P	C6orf47_uc003nvm.1_5'Flank|BAT4_uc003nvo.3_Silent_p.P276P|BAT4_uc003nvp.3_Silent_p.P276P|BAT4_uc003nvq.2_Silent_p.P276P	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	276	G-patch.					intracellular	nucleic acid binding				0						CCTCACCCCGGGGTCCCAGCC	0.647													90	457					0	0	1	0	0
LY6G5C	80741	broad.mit.edu	37	6	31647023	31647024	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31647023_31647024CC>TT	uc003nvu.1	-	2	134_135	c.134_135GG>AA	c.(133-135)TGG>TAA	p.W45*	LY6G5C_uc003nvw.1_RNA|LY6G5C_uc010jtb.1_RNA	NM_025262	NP_079538	Q5SRR4	LY65C_HUMAN	lymphocyte antigen 6 complex G5C	48						extracellular region					0						GAGGGGGTTCCCAATTGACAGG	0.54													96	465					0	0	1	0	0
LY6G6F	259215	broad.mit.edu	37	6	31685475	31685475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31685475G>A	uc003nwb.1	+	6	1043	c.1043G>A	c.(1042-1044)GGA>GAA	p.G348E	LY6G6D_uc003nwf.1_Missense_Mutation_p.G99E|LY6G6D_uc003nwg.1_Missense_Mutation_p.G78E	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	Error:Variant_position_missing_in_Q5SQ64_after_alignment						integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						TGCTACCTGGGAGACCTGTGC	0.607													248	489					0	0	1	0	0
DDAH2	23564	broad.mit.edu	37	6	31696231	31696231	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31696231G>A	uc003nwp.2	-	3	1099	c.468C>T	c.(466-468)TTC>TTT	p.F156F	DDAH2_uc003nwq.2_Silent_p.F156F	NM_013974	NP_039268	O95865	DDAH2_HUMAN	dimethylarginine dimethylaminohydrolase 2	156					anti-apoptosis|arginine catabolic process|citrulline metabolic process|nitric oxide biosynthetic process|nitric oxide mediated signal transduction	cytoplasm	dimethylargininase activity|protein binding				0					L-Citrulline(DB00155)	TCCGCACCCGGAACGTGTCCG	0.662													34	174					0	0	1	0	0
C4A	720	broad.mit.edu	37	6	31964213	31964213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:31964213C>T	uc011doy.1	+	28	3563	c.3512C>T	c.(3511-3513)TCC>TTC	p.S1171F	C4A_uc011doz.1_Missense_Mutation_p.S1171F	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1171					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						CAGGAAGCCTCCATCTCAAAG	0.597													25	153					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32012967	32012967	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32012967G>A	uc003nzl.2	-	32	10939	c.10737C>T	c.(10735-10737)GGC>GGT	p.G3579G	TNXB_uc003nzg.1_Silent_p.G10G|TNXB_uc003nzh.1_Silent_p.G48G	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3626	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AATCAAAGGGGCCCTGGGCCA	0.647													126	476					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32018087	32018087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32018087C>T	uc003nzl.2	-	27	9323	c.9121G>A	c.(9121-9123)GAA>AAA	p.E3041K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3088					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTCTCGGCTTCATCCTTTGGA	0.582													117	545					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32025965	32025965	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32025965C>T	uc003nzl.2	-	22	7897	c.7695G>A	c.(7693-7695)GCG>GCA	p.A2565A		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2625	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CAACACGCACCGCCTGGGGCC	0.677													143	277					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32036905	32036905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32036905C>T	uc003nzl.2	-	16	5798	c.5596G>A	c.(5596-5598)GAA>AAA	p.E1866K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1948					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCCGTTTCTTCCCTGCCGGCT	0.627													84	317					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32041572	32041572	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32041572C>T	uc003nzl.2	-	12	4735	c.4533G>A	c.(4531-4533)AAG>AAA	p.K1511K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1598	Fibronectin type-III 8.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCTGCCCGTCCTTGTCCTTGT	0.567													108	450					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065665	32065665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32065665C>T	uc003nzl.2	-	2	513	c.311G>A	c.(310-312)AGG>AAG	p.R104K	TNXB_uc010jts.1_Missense_Mutation_p.R103K|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	104					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TAGACGGACCCTCAGGGCCTG	0.617													56	340					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188876	32188876	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32188876C>T	uc003obb.2	-	4	817	c.678G>A	c.(676-678)CAG>CAA	p.Q226Q	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.Q226Q	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	226	EGF-like 5; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GTGGACCCTCCTGCCCCACAG	0.632													224	356					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32605317	32605317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32605317G>A	uc003obr.2	+	1	135	c.82G>A	c.(82-84)GCT>ACT	p.A28T	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.A28T	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	28	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						AGACATTGTGGGTGAGTGCAT	0.493													6	15					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609155	32609155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32609155G>A	uc003obr.2	+	2	204	c.151G>A	c.(151-153)GAA>AAA	p.E51K	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.E51K|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	51	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						GTACACCCATGAATTTGATGG	0.532													6	84					0	0	1	0	0
HLA-DQB1	3119	broad.mit.edu	37	6	32629236	32629236	+	Splice_Site	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32629236T>G	uc003obw.2	-	4	744	c.662_splice	c.e4-1	p.R221_splice	HLA-DQB1_uc010juc.1_Splice_Site_p.R176_splice|HLA-DQB1_uc003obv.2_Splice_Site_p.R221_splice|HLA-DQB1_uc011dqd.1_Intron	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ						antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACTGAGCCCCTAAAGAGCAGA	0.542									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				9	8					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32782883	32782883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:32782883G>A	uc011dqf.1	-	13	2242	c.2120C>T	c.(2119-2121)GCC>GTC	p.A707V	HLA-DOB_uc003oca.2_Missense_Mutation_p.A100V|HLA-DOB_uc011dqg.1_Missense_Mutation_p.A100V	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CCCATCCACGGCCTGTCTGCT	0.592													40	39					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33141829	33141829	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:33141829G>A	uc003ocx.1	-	33	2716	c.2488C>T	c.(2488-2490)CTG>TTG	p.L830L	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.L744L|COL11A2_uc003ocz.1_Silent_p.L723L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	830	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TTCCCCGACAGGCCCTGGTGG	0.627													17	72					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33144235	33144235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:33144235C>T	uc003ocx.1	-	27	2372	c.2144G>A	c.(2143-2145)GGA>GAA	p.G715E	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G629E|COL11A2_uc003ocz.1_Missense_Mutation_p.G608E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	715	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TCCTGGGTATCCTAGAGGTCC	0.567													15	37					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33157238	33157238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:33157238G>A	uc003ocx.1	-	2	319	c.91C>T	c.(91-93)CCT>TCT	p.P31S	COL11A2_uc003ocy.1_Missense_Mutation_p.P31S|COL11A2_uc003ocz.1_Missense_Mutation_p.P31S|COL11A2_uc003oda.2_Missense_Mutation_p.P31S	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	31	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						ACATCCACAGGGGGTGCACCT	0.587													20	50					0	0	1	0	0
RING1	6015	broad.mit.edu	37	6	33179271	33179271	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:33179271C>T	uc003odk.2	+	5	986	c.792C>T	c.(790-792)CTC>CTT	p.L264L	RING1_uc011dqx.1_Silent_p.L264L|RING1_uc003odl.2_Silent_p.L235L	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	264	Necessary for interaction with CBX2 (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AAATTGAGCTCGTGTTCCGGC	0.652													4	15					0	0	1	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283441	33283441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:33283441G>A	uc003oeb.2	-	2	1405	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.P418L	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATGTCCAAGGGAAGGAGCGG	0.617													124	97					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34100795	34100795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:34100795G>A	uc003oir.3	-	1	649	c.479C>T	c.(478-480)TCG>TTG	p.S160L	GRM4_uc011dsn.1_Missense_Mutation_p.S160L|GRM4_uc010jvh.2_Missense_Mutation_p.S160L|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Missense_Mutation_p.S79L	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	160	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GATGGAGACCGAGCTCCCTGA	0.617													10	34					0	0	1	0	0
TCP11	6954	broad.mit.edu	37	6	35086119	35086119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35086119G>A	uc003okd.2	-	10	1659	c.1478C>T	c.(1477-1479)CCC>CTC	p.P493L	TCP11_uc003ojz.1_Missense_Mutation_p.P418L|TCP11_uc003oka.2_Missense_Mutation_p.P418L|TCP11_uc003okb.2_Missense_Mutation_p.P417L|TCP11_uc003okc.2_Missense_Mutation_p.P417L|TCP11_uc011dsu.1_Missense_Mutation_p.P475L|TCP11_uc011dsv.1_Missense_Mutation_p.P442L|TCP11_uc011dsw.1_Missense_Mutation_p.P447L	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	480					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						AGTGTAGTAGGGACCAAACAC	0.493													46	170					0	0	1	0	0
TCP11	6954	broad.mit.edu	37	6	35088319	35088319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35088319G>A	uc003okd.2	-	7	1040	c.859C>T	c.(859-861)CCC>TCC	p.P287S	TCP11_uc003ojz.1_Missense_Mutation_p.P212S|TCP11_uc003oka.2_Missense_Mutation_p.P212S|TCP11_uc003okb.2_Missense_Mutation_p.P211S|TCP11_uc003okc.2_Missense_Mutation_p.P211S|TCP11_uc011dsu.1_Missense_Mutation_p.P269S|TCP11_uc011dsv.1_Missense_Mutation_p.P236S|TCP11_uc011dsw.1_Missense_Mutation_p.P241S	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	274					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						TTGGGAGAGGGGCCAGCCACA	0.567													19	90					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35207537	35207537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35207537G>A	uc003okf.1	+	8	844	c.838G>A	c.(838-840)GAG>AAG	p.E280K	SCUBE3_uc003okg.1_Missense_Mutation_p.E279K|SCUBE3_uc003okh.1_Missense_Mutation_p.E167K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	280	EGF-like 7; calcium-binding (Potential).				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						AGATATAGATGAGTGCCGCTT	0.453													29	118					0	0	1	0	0
ZNF76	7629	broad.mit.edu	37	6	35259093	35259093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35259093G>A	uc003oki.1	+	8	869	c.664G>A	c.(664-666)GAG>AAG	p.E222K	ZNF76_uc011dsy.1_Missense_Mutation_p.E222K|ZNF76_uc011dsz.1_Missense_Mutation_p.E222K|ZNF76_uc003okj.1_Missense_Mutation_p.E222K	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	222					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCACACTGGTGAGAAACCATA	0.582													6	25					0	0	1	0	0
FANCE	2178	broad.mit.edu	37	6	35425696	35425696	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35425696T>C	uc003oko.1	+	4	1089	c.904T>C	c.(904-906)TTA>CTA	p.L302L	FANCE_uc010jvw.1_Silent_p.L302L	NM_021922	NP_068741	Q9HB96	FANCE_HUMAN	Fanconi anemia, complementation group E	302	Interaction with FANCC.				DNA repair	nucleoplasm	protein binding			ovary(1)|lung(1)|skin(1)	3						TCCCCAGGGGTTAGAGGGATT	0.562			N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				18	100					0	0	1	0	0
TEAD3	7005	broad.mit.edu	37	6	35446053	35446053	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35446053C>G	uc003oku.3	-	7	765	c.529G>C	c.(529-531)GAC>CAC	p.D177H	TEAD3_uc003okt.2_Missense_Mutation_p.D66H|TEAD3_uc010jvx.2_Missense_Mutation_p.D117H	NM_003214	NP_003205	Q99594	TEAD3_HUMAN	TEA domain family member 3	177	Pro-rich.|Transcriptional activation (Potential).				female pregnancy|hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AATACTCACTCCTGAGAGGGT	0.607													23	21					0	0	1	0	0
TULP1	7287	broad.mit.edu	37	6	35477623	35477623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35477623C>T	uc003okv.3	-	6	594	c.582G>A	c.(580-582)ATG>ATA	p.M194I	TULP1_uc003okw.3_Missense_Mutation_p.M141I	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	194					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TGGTCTTTCTCATCTTGGTCC	0.572													39	187					0	0	1	0	0
C6orf127	340204	broad.mit.edu	37	6	35755682	35755682	+	Silent	SNP	G	A	A	rs141726973		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35755682G>A	uc003old.3	+	3	318	c.261G>A	c.(259-261)CGG>CGA	p.R87R		NM_001010886	NP_001010886	A2RUU4	CF127_HUMAN	hypothetical protein LOC340204 precursor	87					digestion|lipid catabolic process	extracellular region	enzyme activator activity	p.R87R(1)		skin(1)	1						CCTGCCTGCGGAACCTGACTT	0.493													24	94					0	0	1	0	0
CLPS	1208	broad.mit.edu	37	6	35764997	35764997	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35764997C>T	uc003ole.1	-	1	106	c.69G>A	c.(67-69)GGG>GGA	p.G23G	CLPS_uc003olf.1_Silent_p.G23G	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	23					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						TGATAATGATCCCCCGGGGGC	0.592													11	95					0	0	1	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773576	35773576	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:35773576C>T	uc003olg.1	+	1	506	c.129C>T	c.(127-129)CTC>CTT	p.L43L		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	43	Helical; (Potential).					integral to membrane				skin(1)	1						TCATGGCCCTCTTCATCCAGC	0.592													41	138					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36172470	36172470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:36172470G>A	uc003olv.3	+	3	1708	c.1484G>A	c.(1483-1485)AGG>AAG	p.R495K	BRPF3_uc010jwb.2_Missense_Mutation_p.R495K|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Missense_Mutation_p.R495K	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	495					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						TCCTTTCAGAGGAAAAACCAG	0.517													29	113					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36269984	36269984	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:36269984C>T	uc010jwf.2	+	6	1122	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F	PNPLA1_uc003olw.1_Silent_p.F279F|PNPLA1_uc010jwe.1_Silent_p.F288F	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	374	Pro-rich.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						CTGTATCATTCCCAGCTGTGC	0.572											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	139					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36298290	36298290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:36298290C>T	uc003oly.2	-	2	356	c.178G>A	c.(178-180)GAC>AAC	p.D60N		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	60										skin(2)|ovary(1)|breast(1)	4						GCTGGGCTGTCTGAATGTCTG	0.637													21	82					0	0	1	0	0
PI16	221476	broad.mit.edu	37	6	36931130	36931130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:36931130G>A	uc003ona.2	+	5	1340	c.1012G>A	c.(1012-1014)GAC>AAC	p.D338N	PI16_uc003omz.1_Intron|PI16_uc003onb.2_Intron|PI16_uc011dts.1_Missense_Mutation_p.D109N	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	338	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						GAACTCTCTGGACCCCAAGAT	0.547													13	52					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38838294	38838294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:38838294G>A	uc003ooe.1	+	47	6895	c.6295G>A	c.(6295-6297)GAG>AAG	p.E2099K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGTTCAGATAGAGGGTTTGAT	0.398													9	27					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38885909	38885909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:38885909C>T	uc003ooe.1	+	68	10466	c.9866C>T	c.(9865-9867)CCT>CTT	p.P3289L	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAAGTGTTGCCTCTGAAGGTA	0.378													8	33					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38917246	38917246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:38917246G>A	uc003ooe.1	+	79	12097	c.11497G>A	c.(11497-11499)GGG>AGG	p.G3833R	DNAH8_uc003oog.1_Missense_Mutation_p.G282R|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAATGAGAAGGGGTGGAAAAG	0.373													26	153					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39602662	39602662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:39602662C>T	uc003oot.2	-	5	567	c.472G>A	c.(472-474)GAT>AAT	p.D158N	KIF6_uc010jxa.1_5'UTR|KIF6_uc011dua.1_Missense_Mutation_p.D158N|KIF6_uc010jxb.1_Missense_Mutation_p.D158N	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	158	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TGTCTTGGATCCAAAAGATCA	0.358													19	82					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40359793	40359793	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:40359793C>T	uc003oph.1	-	3	2724	c.2259G>A	c.(2257-2259)ACG>ACA	p.T753T		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	753	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGCTGCGCTTCGTCCAGATGT	0.642													27	38					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40399581	40399582	+	Missense_Mutation	DNP	CC	TT	TT	rs140611678		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:40399581_40399582CC>TT	uc003oph.1	-	2	1736_1737	c.1271_1272GG>AA	c.(1270-1272)CGG>CAA	p.R424Q		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	424	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CAAGCACAGCCCGTTCCGGGGG	0.634													9	74					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40400106	40400106	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:40400106C>T	uc003oph.1	-	2	1212	c.747G>A	c.(745-747)GAG>GAA	p.E249E		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	249	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCCAGAGAAGCTCACAATTGC	0.602													21	33					0	0	1	0	0
TREML3	340206	broad.mit.edu	37	6	41185624	41185624	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:41185624G>A	uc003oqb.2	-	1		c.62C>T				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						CTGACACCAGGATTTGGGCTG	0.517													7	44					0	0	1	0	0
TREML4	285852	broad.mit.edu	37	6	41196546	41196546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:41196546C>T	uc003oqc.2	+	2	262	c.158C>T	c.(157-159)TCC>TTC	p.S53F	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	53	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAGCCCAAATCCTGGTGTCAG	0.527													23	66					0	0	1	0	0
TREML2P1	221438	broad.mit.edu	37	6	41217213	41217213	+	RNA	SNP	C	T	T	rs61734087		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:41217213C>T	uc003oqe.1	+	1		c.99C>T				NR_002794				Homo sapiens TREM-like transcript 5 (TLT5) pseudogene mRNA, partial sequence.												0						AGCCTGGTTTCACCCAAGTCT	0.562													12	88					0	0	1	0	0
USP49	25862	broad.mit.edu	37	6	41766657	41766657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:41766657G>A	uc003ori.2	-	7	1903	c.1681C>T	c.(1681-1683)CGT>TGT	p.R561C		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	561					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CGATGATTACGGCCAGACCAC	0.418													12	61					0	0	1	0	0
GUCA1A	2978	broad.mit.edu	37	6	42147122	42147122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:42147122C>T	uc003orx.2	+	6	1232	c.587C>T	c.(586-588)GCC>GTC	p.A196V	GUCA1A_uc011duo.1_RNA|GUCA1A_uc010jxt.2_Missense_Mutation_p.A196V	NM_000409	NP_000400	P43080	GUC1A_HUMAN	guanylate cyclase activator 1A (retina)	196					signal transduction|visual perception	membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity				0	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;5.54e-05)|Epithelial(12;0.000167)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCTGACGAGGCCGCTGAGGCA	0.632													5	19					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42224740	42224740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:42224740G>A	uc003osd.2	-	11	3000	c.2437C>T	c.(2437-2439)CCC>TCC	p.P813S	TRERF1_uc011duq.1_Missense_Mutation_p.P730S|TRERF1_uc003osb.2_Missense_Mutation_p.P569S|TRERF1_uc003osc.2_Missense_Mutation_p.P569S|TRERF1_uc003ose.2_Missense_Mutation_p.P833S	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	813	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TCTGGCCAGGGCTTCCATACC	0.512													9	79					0	0	1	0	0
CUL7	9820	broad.mit.edu	37	6	43014822	43014822	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:43014822G>A	uc003otq.2	-	10	2496	c.2193C>T	c.(2191-2193)TTC>TTT	p.F731F	CUL7_uc010jyg.2_5'Flank|CUL7_uc011dvb.1_Silent_p.F815F|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	731					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GGCGGTGCAGGAAGAAAATCA	0.557													28	101					0	0	1	0	0
TJAP1	93643	broad.mit.edu	37	6	43473103	43473103	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:43473103T>C	uc003ovd.2	+	11	1560	c.1184T>C	c.(1183-1185)CTA>CCA	p.L395P	TJAP1_uc003ovf.2_Missense_Mutation_p.L385P|TJAP1_uc003ove.2_Missense_Mutation_p.L385P|TJAP1_uc003ovc.2_Missense_Mutation_p.L385P|TJAP1_uc010jyp.2_Missense_Mutation_p.L354P|TJAP1_uc011dvh.1_Missense_Mutation_p.L385P|TJAP1_uc003ovg.2_Missense_Mutation_p.L261P|TJAP1_uc011dvi.1_Missense_Mutation_p.L395P|TJAP1_uc011dvj.1_Missense_Mutation_p.L195P|TJAP1_uc003ovi.2_Missense_Mutation_p.L261P	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	395						Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			ccagcacccctaacactcagt	0.328													7	13					0	0	1	0	0
XPO5	57510	broad.mit.edu	37	6	43533451	43533451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:43533451G>A	uc003ovp.2	-	8	1068	c.857C>T	c.(856-858)CCC>CTC	p.P286L		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	286					gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			GACCATCAAGGGCTTCCGGTC	0.373													5	13					0	0	1	0	0
POLH	5429	broad.mit.edu	37	6	43582291	43582291	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:43582291T>C	uc003ovq.3	+	11	2443	c.2139T>C	c.(2137-2139)CAT>CAC	p.H713H	POLH_uc010jyu.2_Silent_p.H589H|POLH_uc011dvl.1_RNA|POLH_uc003ovr.3_Silent_p.H614H	NM_006502	NP_006493	Q9Y253	POLH_HUMAN	DNA-directed DNA polymerase eta	713					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA repair|response to UV-C	cytoplasm|nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			breast(2)	2	all_cancers(18;1.89e-05)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000753)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CATTAACACATTAGTGCTGCC	0.388								DNA_polymerases_(catalytic_subunits)	Xeroderma_Pigmentosum				28	122					0	0	1	0	0
SLC35B2	347734	broad.mit.edu	37	6	44222583	44222583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:44222583C>T	uc003oxd.2	-	4	1295	c.1159G>A	c.(1159-1161)GGC>AGC	p.G387S	SLC35B2_uc011dvt.1_Missense_Mutation_p.G290S|SLC35B2_uc011dvu.1_Missense_Mutation_p.G254S	NM_178148	NP_835361	Q8TB61	S35B2_HUMAN	solute carrier family 35, member B2	387	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			ACAGTGTGGCCATAGAGAAGG	0.582													8	69					0	0	1	0	0
CDC5L	988	broad.mit.edu	37	6	44413592	44413592	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:44413592C>T	uc003oxl.2	+	15	2551	c.2292C>T	c.(2290-2292)CCC>CCT	p.P764P		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	764	Interaction with PLRG1.|Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CTGCTATTCCCCGGAGGCTAG	0.393													35	45					0	0	1	0	0
ENPP5	59084	broad.mit.edu	37	6	46135438	46135438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46135438C>T	uc003oxz.1	-	2	770	c.562G>A	c.(562-564)GAA>AAA	p.E188K	ENPP5_uc003oya.1_Missense_Mutation_p.E188K|ENPP5_uc011dvz.1_Missense_Mutation_p.E94K|ENPP5_uc010jzc.1_Missense_Mutation_p.E188K	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	188						extracellular region|integral to membrane	hydrolase activity				0						TCAGGGTCTTCCCAATAGAGA	0.413													34	50					0	0	1	0	0
TDRD6	221400	broad.mit.edu	37	6	46656336	46656336	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46656336C>T	uc003oyj.2	+	1	471	c.471C>T	c.(469-471)TTC>TTT	p.F157F	TDRD6_uc010jze.2_Silent_p.F151F	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	157					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CCGTGGACTTCCTTAGCAACC	0.692													10	30					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46802451	46802451	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46802451G>A	uc010jzh.1	+	12	1788	c.1746G>A	c.(1744-1746)CTG>CTA	p.L582L	MEP1A_uc011dwg.1_Silent_p.L304L|MEP1A_uc011dwh.1_Silent_p.L610L|MEP1A_uc011dwi.1_Silent_p.L482L	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	582	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GGAGTTTCCTGAAAAATGATG	0.413													12	74					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46806750	46806750	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46806750G>A	uc010jzh.1	+	14	2160	c.2118G>A	c.(2116-2118)GGG>GGA	p.G706G	MEP1A_uc011dwg.1_Silent_p.G428G|MEP1A_uc011dwh.1_Silent_p.G734G|MEP1A_uc011dwi.1_Silent_p.G606G	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	706	EGF-like.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TCTACACGGGGGAGCGCTGTC	0.592													40	207					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826630	46826630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46826630G>A	uc003oyo.3	-	17	3299	c.3010C>T	c.(3010-3012)CCT>TCT	p.P1004S	GPR116_uc011dwj.1_Missense_Mutation_p.P559S|GPR116_uc011dwk.1_Missense_Mutation_p.P433S|GPR116_uc003oyp.3_Missense_Mutation_p.P862S|GPR116_uc003oyq.3_Missense_Mutation_p.P1004S|GPR116_uc010jzi.1_Missense_Mutation_p.P676S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1004	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGAGAACTAGGATCTGGGGAG	0.488													12	70					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826784	46826784	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46826784C>T	uc003oyo.3	-	17	3145	c.2856G>A	c.(2854-2856)ACG>ACA	p.T952T	GPR116_uc011dwj.1_Silent_p.T507T|GPR116_uc011dwk.1_Silent_p.T381T|GPR116_uc003oyp.3_Silent_p.T810T|GPR116_uc003oyq.3_Silent_p.T952T|GPR116_uc010jzi.1_Silent_p.T624T	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	952	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGACACACTTCGTTTCGCCGC	0.483													16	90					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46991887	46991887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:46991887G>A	uc003oyt.2	-	5	543	c.344C>T	c.(343-345)TCA>TTA	p.S115L	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.S115L	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	115	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						ATCAAGGCATGAGGGAGGAAA	0.502													31	29					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47202494	47202494	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:47202494G>A	uc003oyv.2	-	5	2083	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	550	Cytoplasmic (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			ACTCATCCACGAAGAAGCCCT	0.483													4	17					0	0	1	0	0
CD2AP	23607	broad.mit.edu	37	6	47547151	47547151	+	Missense_Mutation	SNP	G	A	A	rs147188917	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:47547151G>A	uc003oyw.2	+	9	1390	c.934G>A	c.(934-936)GAA>AAA	p.E312K		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	312	SH3 3.				cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			GTGGAGGGGCGAACTTAATGG	0.303													8	55					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47649681	47649681	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:47649681C>T	uc010jzj.1	+	6	1387	c.1386C>T	c.(1384-1386)ATC>ATT	p.I462I	GPR111_uc010jzk.1_Silent_p.I394I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	462	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GCAGCCTGATCCTTTGCTTGT	0.433													17	121					0	0	1	0	0
CRISP3	10321	broad.mit.edu	37	6	49701545	49701545	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:49701545C>T	uc003ozs.2	-	5	309	c.294G>A	c.(292-294)GAG>GAA	p.E98E		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	98					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TGTAGAGATTCTCACCACATT	0.428													84	59					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49753680	49753680	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:49753680G>A	uc003ozu.2	-	1	1328	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	407					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CTCCAGGAAGGATTTTACCTT	0.458													61	58					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754297	49754297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:49754297C>T	uc003ozu.2	-	1	711	c.604G>A	c.(604-606)GAA>AAA	p.E202K		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	202					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					ACTGGGTTTTCCAAGGCTTTA	0.448													13	90					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754784	49754784	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:49754784C>T	uc003ozu.2	-	1	224	c.117G>A	c.(115-117)AGG>AGA	p.R39R		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	39		Substrate (By similarity).			glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AAGCCTTGATCCTCTGGTTGT	0.463													24	105					0	0	1	0	0
DEFB110	245913	broad.mit.edu	37	6	49986775	49986775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:49986775C>T	uc003pac.2	-	2	165	c.119G>A	c.(118-120)GGT>GAT	p.G40D	DEFB110_uc011dwr.1_Intron	NM_001037497	NP_001032586	Q30KQ9	DB110_HUMAN	beta-defensin 110 isoform a	40					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					TTTACATTGACCATTACCTAT	0.383													16	77					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51512900	51512900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:51512900G>A	uc003pah.1	-	63	11603	c.11327C>T	c.(11326-11328)TCC>TTC	p.S3776F		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3776	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AGGTCCCAGGGACTCTACTCT	0.413													79	63					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51524264	51524264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:51524264C>T	uc003pah.1	-	61	10936	c.10660G>A	c.(10660-10662)GAA>AAA	p.E3554K		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3554	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGCGTATTTCAATGGGCTCC	0.408													10	60					0	0	1	0	0
EFHC1	114327	broad.mit.edu	37	6	52334254	52334254	+	Missense_Mutation	SNP	C	T	T	rs144389178	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:52334254C>T	uc003pap.3	+	7	1476	c.1261C>T	c.(1261-1263)CGT>TGT	p.R421C	EFHC1_uc011dwv.1_Missense_Mutation_p.R330C|EFHC1_uc011dww.1_Missense_Mutation_p.R402C	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	421	DM10 3.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					CAAGGTGCTTCGTTATTTGGC	0.343													23	91					0	0	1	0	0
GCM1	8521	broad.mit.edu	37	6	52993551	52993551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:52993551G>A	uc003pbp.2	-	6	973	c.764C>T	c.(763-765)TCC>TTC	p.S255F		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	255						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GTCCACAGTGGAAGTCTGGTC	0.473													9	66					0	0	1	0	0
GCLC	2729	broad.mit.edu	37	6	53364879	53364879	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:53364879G>A	uc003pbw.1	-	15	2054	c.1666C>T	c.(1666-1668)CTG>TTG	p.L556L	GCLC_uc003pbv.1_Silent_p.L280L	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	556					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	AGGTAGTTCAGAATACTACAT	0.368													24	35					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54173700	54173700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:54173700G>A	uc003pcj.2	+	1	498	c.352G>A	c.(352-354)GAA>AAA	p.E118K	TINAG_uc003pci.2_Missense_Mutation_p.E118K|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	118					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TTGGTATCCAGAAGGTAGGCT	0.353													19	86					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54208088	54208088	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:54208088G>A	uc003pcj.2	+	5	835	c.689G>A	c.(688-690)TGG>TAG	p.W230*	TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	230					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TGGCCTGGATGGACTCATGGC	0.378													34	14					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54214537	54214537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:54214537C>T	uc003pcj.2	+	7	1069	c.923C>T	c.(922-924)CCA>CTA	p.P308L	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	308					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCATGCTACCCACTTTTCAAA	0.428													30	142					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54735196	54735196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:54735196G>A	uc003pck.2	+	2	268	c.152G>A	c.(151-153)CGA>CAA	p.R51Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	51										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GTCCAGGAACGAGTTTCAGAC	0.383													21	86					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805016	54805016	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:54805016G>A	uc003pck.2	+	5	1363	c.1247G>A	c.(1246-1248)TGG>TAG	p.W416*		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	416										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CCTGGTAATTGGAAAAAGCCA	0.483													38	61					0	0	1	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039415	55039415	+	Silent	SNP	C	T	T	rs143272352		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55039415C>T	uc003pcl.2	+	1	345	c.30C>T	c.(28-30)CCC>CCT	p.P10P	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	10	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AGGACTCCCCCCCTTGTCGCA	0.557													21	42					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55196519	55196519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55196519G>A	uc003pcm.1	+	2	115	c.29G>A	c.(28-30)GGG>GAG	p.G10E		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	10						integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CAAGCTATGGGGTTAAGCTTG	0.323													8	28					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55223849	55223849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55223849G>A	uc003pcm.1	+	6	951	c.865G>A	c.(865-867)GTG>ATG	p.V289M		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	289	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GGTCCTTCAAGTGCAATGTAC	0.413													56	44					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55264217	55264217	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55264217C>T	uc003pcm.1	+	8	1185	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	367	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TGGAATCCTTCTGTTGGTTAT	0.378													9	31					0	0	1	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55360232	55360232	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55360232G>A	uc003pcn.2	-	8	1029	c.870C>T	c.(868-870)ATC>ATT	p.I290I	HMGCLL1_uc003pco.2_Silent_p.I260I|HMGCLL1_uc010jzx.2_Silent_p.I161I|HMGCLL1_uc011dxc.1_Silent_p.I228I|HMGCLL1_uc011dxd.1_Silent_p.I157I|HMGCLL1_uc011dxe.1_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	290							hydroxymethylglutaryl-CoA lyase activity|metal ion binding	p.I290F(1)		skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			GGGCCGTAAGGATATTTGCTA	0.388													13	29					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55638936	55638936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55638936C>T	uc003pcq.2	-	4	1650	c.938G>A	c.(937-939)CGA>CAA	p.R313Q	BMP5_uc011dxf.1_Missense_Mutation_p.R313Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	313					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCTCACGGATCGAAGAAGTAC	0.453													18	74					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55929392	55929392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:55929392C>T	uc003pcs.2	-	24	2388	c.2156G>A	c.(2155-2157)GGA>GAA	p.G719E	COL21A1_uc010jzz.2_Missense_Mutation_p.G104E|COL21A1_uc011dxg.1_Missense_Mutation_p.G92E|COL21A1_uc011dxh.1_Missense_Mutation_p.G104E|COL21A1_uc003pcr.2_Missense_Mutation_p.E77K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	719	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCCTGGAATTCCCTGTCTTCC	0.323													3	4					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	56044656	56044656	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:56044656G>A	uc003pcs.2	-	3	592	c.360C>T	c.(358-360)ATC>ATT	p.I120I	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Silent_p.I120I|COL21A1_uc003pcu.1_Silent_p.I120I	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	120	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCGCAAACTGGATGGCCTTCC	0.468													12	24					0	0	1	0	0
BEND6	221336	broad.mit.edu	37	6	56846671	56846671	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:56846671G>A	uc010kab.2	+	2	649	c.63G>A	c.(61-63)AGG>AGA	p.R21R	BEND6_uc003pdg.2_RNA	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	21											0						AAGGAAAGAGGAAAAGAACAG	0.353													17	48					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57246866	57246866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:57246866G>A	uc003pdx.2	+	7	680	c.593G>A	c.(592-594)AGG>AAG	p.R198K	PRIM2_uc003pdw.2_Missense_Mutation_p.R198K	NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	198					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTTCGAGGAAGGAAAGTCTAT	0.403													7	36					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57472382	57472382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:57472382C>T	uc003pdx.2	+	13	1258	c.1171C>T	c.(1171-1173)CCA>TCA	p.P391S		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	391					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TCACAGTGATCCAGAGCTGCT	0.458													8	38					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62687973	62687973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:62687973G>A	uc003peg.2	-	4	728	c.481C>T	c.(481-483)CCT>TCT	p.P161S		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		ACACTTACAGGAACCAGGAAT	0.338													14	26					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62688103	62688103	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:62688103C>T	uc003peg.2	-	4	598	c.351G>A	c.(349-351)AGG>AGA	p.R117R		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	117	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		CCCCACTCTTCCTTAGTTCTT	0.358													12	23					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990527	63990527	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:63990527T>A	uc003peh.2	-	4	963	c.929A>T	c.(928-930)GAT>GTT	p.D310V	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	310					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	AATCCCTGAATCACAAAATCC	0.418													6	41					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64394657	64394657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:64394657C>T	uc003pep.1	+	3	1060	c.1034C>T	c.(1033-1035)TCT>TTT	p.S345F	PHF3_uc010kaf.1_Missense_Mutation_p.S345F|PHF3_uc003pem.2_Missense_Mutation_p.S298F|PHF3_uc010kag.1_Missense_Mutation_p.S257F|PHF3_uc010kah.1_Missense_Mutation_p.S159F|PHF3_uc003pen.2_Missense_Mutation_p.S257F|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.S345F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	345					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TCTGATATTTCTAGTGATGCT	0.363													9	27					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64422956	64422956	+	Silent	SNP	C	T	T	rs141522162		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:64422956C>T	uc003pep.1	+	15	5498	c.5472C>T	c.(5470-5472)CCC>CCT	p.P1824P	PHF3_uc003pen.2_Silent_p.P1736P|PHF3_uc011dxs.1_Silent_p.P1093P	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1824	Pro-rich.				multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			CTAATTTTCCCCCACAAAGCA	0.512													69	44					0	0	1	0	0
EYS	346007	broad.mit.edu	37	6	66205150	66205150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:66205150C>T	uc011dxu.1	-	4	692	c.154G>A	c.(154-156)GAC>AAC	p.D52N	EYS_uc003peq.2_Missense_Mutation_p.D52N|EYS_uc003per.1_Missense_Mutation_p.D52N|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	52					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						CTGTAGAAGTCCAAGCAGATG	0.398													14	65					0	0	1	0	0
MCART3P	442229	broad.mit.edu	37	6	66498844	66498844	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:66498844C>T	uc011dxw.1	+	1		c.1073C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						GGTGCCCATTCTTTTCCAGAA	0.448													15	36					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69666580	69666580	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:69666580C>T	uc003pev.3	+	8	1852	c.1404C>T	c.(1402-1404)TCC>TCT	p.S468S	BAI3_uc010kak.2_Silent_p.S468S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	468	TSP type-1 4.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GTGGTTGTTCCAAGTCCTGTG	0.473													17	63					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69703791	69703791	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:69703791C>T	uc003pev.3	+	11	2314	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	BAI3_uc010kak.2_Silent_p.I622I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	622	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTGTGGAGATCCTGAGAAATG	0.458													29	74					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70916889	70916889	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:70916889C>T	uc003pfc.1	+	51	3457	c.3340C>T	c.(3340-3342)CAG>TAG	p.Q1114*		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	1114					cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCCAGGCCCACAGGGCCCCCC	0.532													54	119					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70944612	70944612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:70944612C>T	uc003pfg.3	-	34	2303	c.2144G>A	c.(2143-2145)GGG>GAG	p.G715E	COL9A1_uc003pfe.3_Missense_Mutation_p.G264E|COL9A1_uc003pff.3_Missense_Mutation_p.G472E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	715	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCCCTCAGGCCCTCTCAAGCC	0.572													9	33					0	0	1	0	0
KHDC1	80759	broad.mit.edu	37	6	73951880	73951880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:73951880C>T	uc003pgo.2	-	4	913	c.412G>A	c.(412-414)GGC>AGC	p.G138S	KHDC1_uc011dyl.1_RNA|KHDC1_uc003pgn.3_Missense_Mutation_p.G65S	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	138	KH; atypical.					integral to membrane	RNA binding			skin(1)	1						CGAGTCTGGCCTGTAGCTGTG	0.547													7	20					0	0	1	0	0
C6orf221	154288	broad.mit.edu	37	6	74072893	74072893	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74072893A>G	uc003pgt.3	+	2	298	c.245A>G	c.(244-246)AAC>AGC	p.N82S		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	82	KH; atypical.									skin(2)	2						TTGGACCCTAACGGCGAGGCT	0.572													20	57					0	0	1	0	0
OOEP	441161	broad.mit.edu	37	6	74078998	74078998	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74078998G>T	uc003pgu.3	-	2	301	c.301C>A	c.(301-303)CGT>AGT	p.R101S	OOEP_uc003pgv.3_Missense_Mutation_p.R46S	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	101	KH; atypical.					cytoplasm					0						TTCTGTACACGGGGCCGCCCG	0.557													7	17					3.86212e-05	3.87079e-05	1	1	0
OOEP	441161	broad.mit.edu	37	6	74079008	74079008	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74079008G>A	uc003pgu.3	-	2	291	c.291C>T	c.(289-291)TTC>TTT	p.F97F	OOEP_uc003pgv.3_Silent_p.F42F	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	97	KH; atypical.					cytoplasm					0						GGGGCCGCCCGAAAACGGTGA	0.567													7	15					0	0	1	0	0
DDX43	55510	broad.mit.edu	37	6	74104737	74104737	+	Nonsense_Mutation	SNP	C	T	T	rs147467609	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74104737C>T	uc003pgw.2	+	1	453	c.109C>T	c.(109-111)CGA>TGA	p.R37*	OOEP_uc003pgv.3_5'UTR|DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	37						intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						GGAGTTGAATCGAACAGGTCC	0.657													24	58					0	0	1	0	0
CD109	135228	broad.mit.edu	37	6	74440165	74440165	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74440165G>A	uc003php.2	+	4	800	c.375G>A	c.(373-375)GAG>GAA	p.E125E	CD109_uc010kaz.2_Silent_p.E125E|CD109_uc003phq.2_Silent_p.E125E|CD109_uc010kba.2_Intron	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	125						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TATCATTTGAGACCAAGAGAA	0.403													16	47					0	0	1	0	0
CD109	135228	broad.mit.edu	37	6	74519807	74519807	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:74519807C>T	uc003php.2	+	27	3881	c.3456C>T	c.(3454-3456)CAC>CAT	p.H1152H	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Silent_p.H1152H|CD109_uc010kba.2_Silent_p.H1075H	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1152						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TGCTCTCACACTTCTTACAAT	0.478													11	11					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76023665	76023665	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:76023665T>C	uc003pia.2	-	5	2256	c.1883A>G	c.(1882-1884)AAG>AGG	p.K628R	FILIP1_uc003phy.1_Missense_Mutation_p.K628R|FILIP1_uc003phz.2_Missense_Mutation_p.K529R|FILIP1_uc010kbe.2_Missense_Mutation_p.K631R|FILIP1_uc003pib.1_Missense_Mutation_p.K380R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	628	Potential.									skin(3)|ovary(1)	4						TTCCTTAATCTTATTATCTTC	0.403													47	51					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76734938	76734938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:76734938G>A	uc003pik.1	-	5	665	c.535C>T	c.(535-537)CCT>TCT	p.P179S		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	179					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GTTTCACCAGGCTCTCCCAAT	0.343													10	24					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76744384	76744384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:76744384C>T	uc003pik.1	-	3	552	c.422G>A	c.(421-423)GGA>GAA	p.G141E		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	141					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GAAGTTTTTTCCAATGTCAAA	0.507													25	28					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76751656	76751656	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:76751656G>A	uc003pik.1	-	2	385	c.255C>T	c.(253-255)TCC>TCT	p.S85S		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	85					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCTGTTTCATGGATTCCTGTG	0.388													14	22					0	0	1	0	0
IMPG1	3617	broad.mit.edu	37	6	76751661	76751661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:76751661C>T	uc003pik.1	-	2	380	c.250G>A	c.(250-252)GAA>AAA	p.E84K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	84					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTCATGGATTCCTGTGGACAG	0.383													14	24					0	0	1	0	0
PHIP	55023	broad.mit.edu	37	6	79664602	79664602	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:79664602A>G	uc003pir.2	-	35	4208	c.3982T>C	c.(3982-3984)TTG>CTG	p.L1328L	PHIP_uc003piq.2_Silent_p.L352L|PHIP_uc011dyp.1_Silent_p.L1327L|PHIP_uc003pio.3_Silent_p.L214L	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1328					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		AGATTTAACAATTCTTCACAC	0.353													9	8					0	0	1	0	0
LCA5	167691	broad.mit.edu	37	6	80223170	80223170	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:80223170A>G	uc003pix.2	-	3	914	c.479T>C	c.(478-480)CTT>CCT	p.L160P	LCA5_uc003piy.2_Missense_Mutation_p.L160P|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.L160P	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	160	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		ACGAAATATAAGTTGTGAGAT	0.363													7	21					0	0	1	0	0
SH3BGRL2	83699	broad.mit.edu	37	6	80406229	80406229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:80406229G>A	uc003piz.1	+	3	438	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_031469	NP_113657	Q9UJC5	SH3L2_HUMAN	SH3 domain binding glutamic acid-rich protein	87						nucleus	SH3 domain binding				0		all_cancers(76;0.00188)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.174)		BRCA - Breast invasive adenocarcinoma(397;0.0278)		TGAATCCAAGGAAAGCAACAC	0.313													22	35					0	0	1	0	0
IBTK	25998	broad.mit.edu	37	6	82882185	82882186	+	Missense_Mutation	DNP	GG	AA	AA	rs143687532		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:82882185_82882186GG>AA	uc003pjl.1	-	28	4368_4369	c.3841_3842CC>TT	c.(3841-3843)CCA>TTA	p.P1281L	IBTK_uc011dyu.1_Missense_Mutation_p.P232L|IBTK_uc011dyv.1_Missense_Mutation_p.P1266L|IBTK_uc011dyw.1_Missense_Mutation_p.P1080L|IBTK_uc010kbi.1_Missense_Mutation_p.P975L	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	1281					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		AAAAGTGACTGGGGCTACCATG	0.371													11	14					0	0	1	0	0
ME1	4199	broad.mit.edu	37	6	84117513	84117513	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:84117513G>A	uc003pjy.2	-	2	292	c.186C>T	c.(184-186)TTC>TTT	p.F62F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	62					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCAGATGCTCGAAATTTTTTA	0.383													24	28					0	0	1	0	0
MRAP2	112609	broad.mit.edu	37	6	84798839	84798839	+	Missense_Mutation	SNP	G	A	A	rs147564754		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:84798839G>A	uc003pkg.3	+	4	447	c.257G>A	c.(256-258)AGA>AAA	p.R86K	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	86					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding	p.R86K(1)		skin(2)	2						AAGAGATTCAGAATGAACAGC	0.433													13	13					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725391	87725391	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:87725391C>T	uc003pli.2	+	2	1042	c.339C>T	c.(337-339)CTC>CTT	p.L113L		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	113	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TCCTCCACCTCTGTGTCATTG	0.552													15	27					0	0	1	0	0
HTR1E	3354	broad.mit.edu	37	6	87725443	87725443	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:87725443G>T	uc003pli.2	+	2	1094	c.391G>T	c.(391-393)GCC>TCC	p.A131S		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	131	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TATTGAATACGCCAGGAAGAG	0.572													30	26					7.26314e-15	7.33293e-15	1	1	0
C6orf165	154313	broad.mit.edu	37	6	88173757	88173757	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:88173757T>C	uc003plv.2	+	13	1750	c.1658T>C	c.(1657-1659)GTT>GCT	p.V553A	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.V365A|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	553										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		CGCCAGAAAGTTACTCACTCA	0.368													7	10					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88853866	88853866	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:88853866C>T	uc011dzq.1	-	2	4691	c.1128G>A	c.(1126-1128)AAG>AAA	p.K376K	CNR1_uc010kbz.2_Silent_p.K376K|CNR1_uc011dzr.1_Silent_p.K376K|CNR1_uc011dzs.1_Silent_p.K376K|CNR1_uc003pmq.3_Silent_p.K376K|CNR1_uc011dzt.1_Silent_p.K376K|CNR1_uc010kca.2_Silent_p.K343K	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	376	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CAAACACCGTCTTAATGAGCT	0.517													9	20					0	0	1	0	0
GABRR1	2569	broad.mit.edu	37	6	89895081	89895081	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:89895081G>A	uc003pna.2	-	7	1199	c.744C>T	c.(742-744)TTC>TTT	p.F248F	GABRR1_uc011dzv.1_Silent_p.F225F	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	248	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	CCTGAATGAGGAACTGGGAGA	0.488													32	30					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90406197	90406197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:90406197G>A	uc003pnn.1	-	60	9381	c.9265C>T	c.(9265-9267)CCC>TCC	p.P3089S		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3089					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GAAAGAATGGGGAGGCCACTC	0.517													16	26					0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90468627	90468627	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:90468627A>T	uc003pnn.1	-	18	2629	c.2513T>A	c.(2512-2514)ATT>AAT	p.I838N	MDN1_uc003pno.1_Missense_Mutation_p.I256N	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	838					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AGCCAAGTTAATCTCATCCAA	0.413													11	10					0	0	1	0	0
BACH2	60468	broad.mit.edu	37	6	90660156	90660156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:90660156G>A	uc011eab.1	-	7	2478	c.1669C>T	c.(1669-1671)CTT>TTT	p.L557F	BACH2_uc003pnw.2_Missense_Mutation_p.L557F|BACH2_uc010kch.2_Missense_Mutation_p.L557F	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	557						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		TCTGTGGCAAGGAATCTGGCT	0.567													21	28					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93969189	93969189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:93969189G>A	uc003poe.2	-	10	2048	c.1807C>T	c.(1807-1809)CCA>TCA	p.P603S	EPHA7_uc003pof.2_Missense_Mutation_p.P598S|EPHA7_uc011eac.1_Intron	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	603	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TTGGTGCCTGGAAATTTAACT	0.423													22	21					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93979289	93979289	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:93979289G>A	uc003poe.2	-	7	1780	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	EPHA7_uc003pof.2_Silent_p.F513F|EPHA7_uc011eac.1_Silent_p.F513F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	513	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCCGAATCTGGAAAACATACA	0.398													20	28					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120431	94120431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:94120431G>A	uc003poe.2	-	3	861	c.620C>T	c.(619-621)TCC>TTC	p.S207F	EPHA7_uc003pof.2_Missense_Mutation_p.S207F|EPHA7_uc011eac.1_Missense_Mutation_p.S207F|EPHA7_uc003pog.3_Missense_Mutation_p.S207F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	207	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.S207F(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTCAATAATGGACCAGCACTT	0.433													11	25					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94120760	94120760	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:94120760C>T	uc003poe.2	-	3	532	c.291G>A	c.(289-291)AGG>AGA	p.R97R	EPHA7_uc003pof.2_Silent_p.R97R|EPHA7_uc011eac.1_Silent_p.R97R|EPHA7_uc003pog.3_Silent_p.R97R	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	97	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTACAAAAATCCTTTGTGCAT	0.423													22	31					0	0	1	0	0
FUT9	10690	broad.mit.edu	37	6	96651774	96651774	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:96651774T>A	uc003pop.3	+	3	1084	c.743T>A	c.(742-744)ATC>AAC	p.I248N		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	248	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GAAAATTCAATCCACAAGGAT	0.353													8	7					0	0	1	0	0
KIAA0776	23376	broad.mit.edu	37	6	96999369	96999369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:96999369C>T	uc003por.2	+	16	1927	c.1879C>T	c.(1879-1881)CAT>TAT	p.H627Y	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	627					negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		TACAAAACTCCATAACTCTCT	0.299													12	32					0	0	1	0	0
KIAA0776	23376	broad.mit.edu	37	6	97000522	97000522	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:97000522A>T	uc003por.2	+	18	2198	c.2150A>T	c.(2149-2151)AAT>ATT	p.N717I	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	717					negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		GCTTTTCTTAATAGTAAAATT	0.368													3	8					0	0	1	0	0
GPR63	81491	broad.mit.edu	37	6	97247344	97247344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:97247344C>T	uc010kcl.2	-	3	742	c.264G>A	c.(262-264)ATG>ATA	p.M88I	GPR63_uc003pou.2_Missense_Mutation_p.M88I	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	88	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		GAATGAATATCATTATAGCAG	0.433													11	20					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100395841	100395841	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:100395841C>T	uc003pqh.1	-	3	504	c.189G>A	c.(187-189)AGG>AGA	p.R63R	MCHR2_uc003pqi.1_Silent_p.R63R	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	63	Cytoplasmic (Potential).		R -> K (no changes in receptor binding or functional signaling).			integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CTGTTTTTTTCCTGGATCTGA	0.403													6	19					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100868725	100868725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:100868725C>T	uc003pqj.3	-	9	1315	c.1108G>A	c.(1108-1110)GGG>AGG	p.G370R	SIM1_uc010kcu.2_Missense_Mutation_p.G370R	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	370	Single-minded C-terminal.|Nuclear localization signal (By similarity).				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GATTTGGCCCCCTTTCTGTTG	0.512													8	18					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	101847168	101847168	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:101847168C>T	uc003pqp.3	+	1	264	c.15C>T	c.(13-15)TTC>TTT	p.F5F	GRIK2_uc003pqn.2_Silent_p.F5F|GRIK2_uc003pqo.3_Silent_p.F5F|GRIK2_uc010kcw.2_Silent_p.F5F	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	5					glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	AGATTATTTTCCCGATTCTAA	0.483													10	20					0	0	1	0	0
NR2E1	7101	broad.mit.edu	37	6	108497822	108497823	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:108497822_108497823CC>TT	uc003psg.2	+	4	1130_1131	c.375_376CC>TT	c.(373-378)CTCCCT>CTTTCT	p.P126S		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	126					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		CGGCGGCGCTCCCTGCGCCGGC	0.708													5	12					0	0	1	0	0
AKD1	221264	broad.mit.edu	37	6	109819150	109819150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:109819150C>T	uc003ptn.2	-	37	5142	c.5065G>A	c.(5065-5067)GAA>AAA	p.E1689K	AKD1_uc011eas.1_Missense_Mutation_p.E74K	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1689					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						ACGTACAATTCTGGGTTCTCC	0.458													14	31					0	0	1	0	0
RPF2	84154	broad.mit.edu	37	6	111345392	111345392	+	Silent	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:111345392G>C	uc003pun.2	+	9	622	c.603G>C	c.(601-603)CTG>CTC	p.L201L	RPF2_uc003puo.2_Silent_p.L138L|uc003pup.1_5'Flank	NM_032194	NP_115570	Q9H7B2	RPF2_HUMAN	brix domain containing 1	201	Brix.					nucleolus	protein binding			ovary(2)	2						AAAGGTTGCTGTTGAAGAAAT	0.413													6	21					0	0	1	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368161	111368161	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:111368161A>G	uc003puq.2	-	1	597	c.462T>C	c.(460-462)TTT>TTC	p.F154F		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						CCAAGCCCTCAAATCGGGAGA	0.498													13	17					0	0	1	0	0
REV3L	5980	broad.mit.edu	37	6	111688404	111688404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:111688404G>A	uc003puy.3	-	14	6910	c.6587C>T	c.(6586-6588)TCA>TTA	p.S2196L	REV3L_uc003pux.3_Missense_Mutation_p.S2118L|REV3L_uc003puz.3_Missense_Mutation_p.S2118L|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2196					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		AAAGCAAAGTGATTCACATTT	0.413								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					16	26					0	0	1	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671701	112671701	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:112671701G>A	uc003pvx.1	+	3	1103	c.791G>A	c.(790-792)TGA>TAA	p.*264*		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	264							zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		ATCTGCCCATGAGAAAGTCAG	0.463													13	17					0	0	1	0	0
FAM26F	441168	broad.mit.edu	37	6	116784568	116784568	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:116784568G>A	uc003pwv.2	+	3	743	c.648G>A	c.(646-648)CAG>CAA	p.Q216Q		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	216						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		ATTTGGAACAGGAGCAGCAGA	0.378													16	37					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117121802	117121802	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117121802T>G	uc003pxj.1	-	4	1515	c.1493A>C	c.(1492-1494)AAT>ACT	p.N498T	GPRC6A_uc003pxk.1_Missense_Mutation_p.N323T|GPRC6A_uc003pxl.1_Intron	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	498	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		GAAGACATCATTCTGTAGGTC	0.408													23	38					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117243228	117243228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117243228G>A	uc003pxm.2	+	13	1414	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	451					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGTGTTCCAAGAACTGAAGGA	0.333													9	12					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117248299	117248299	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117248299C>A	uc003pxm.2	+	17	2058	c.1995C>A	c.(1993-1995)CCC>CCA	p.P665P		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	665					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CAGGGAGGCCCCCAAGTGTGG	0.522													28	41					1.75199e-13	1.76782e-13	1	1	0
ROS1	6098	broad.mit.edu	37	6	117622149	117622149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117622149C>T	uc003pxp.1	-	42	6920	c.6721G>A	c.(6721-6723)GAA>AAA	p.E2241K	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2241	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCAAAGCTTTCATTTATGACT	0.323			T	GOPC|ROS1	glioblastoma|NSCLC								8	14					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117681160	117681160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117681160G>A	uc003pxp.1	-	23	3659	c.3460C>T	c.(3460-3462)CCT>TCT	p.P1154S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1154	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATGAGGTGAGGAAATGGGTTG	0.348			T	GOPC|ROS1	glioblastoma|NSCLC								11	8					0	0	1	0	0
GOPC	57120	broad.mit.edu	37	6	117896402	117896402	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:117896402G>A	uc003pxu.2	-	4	818	c.588C>T	c.(586-588)CTC>CTT	p.L196L	GOPC_uc003pxq.1_5'Flank|GOPC_uc003pxv.2_Silent_p.L188L	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	196	Potential.			L->V: No effect on subcellular location; when associated with V-175; V-182 and V- 189.	apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		CTTCAGCCTGGAGAACAGCTA	0.398			O	ROS1	glioblastoma								18	19					0	0	1	0	0
SLC35F1	222553	broad.mit.edu	37	6	118588247	118588247	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:118588247C>T	uc003pxx.3	+	4	768	c.567C>T	c.(565-567)ATC>ATT	p.I189I	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	189	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		TCATCGGCATCGTTGTCTGCA	0.532													75	84					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119288073	119288073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:119288073G>A	uc003pyj.2	-	15	3308	c.2960C>T	c.(2959-2961)CCA>CTA	p.P987L	FAM184A_uc003pyk.3_Missense_Mutation_p.P818L|FAM184A_uc003pyl.3_Missense_Mutation_p.P818L|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	987										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TATATCTTCTGGTTTTGATTC	0.299													8	11					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119296250	119296250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:119296250C>T	uc003pyj.2	-	13	3055	c.2707G>A	c.(2707-2709)GAA>AAA	p.E903K	FAM184A_uc003pyk.3_Missense_Mutation_p.E783K|FAM184A_uc003pyl.3_Missense_Mutation_p.E783K|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	903	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						AATTCCAGTTCTTTGGTTAGG	0.383													11	13					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119345519	119345519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:119345519C>T	uc003pyj.2	-	2	967	c.619G>A	c.(619-621)GAT>AAT	p.D207N	FAM184A_uc003pyk.3_Missense_Mutation_p.D87N|FAM184A_uc003pyl.3_Missense_Mutation_p.D87N	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	207	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GCACTGTGATCCTGCTGTGAC	0.443													21	25					0	0	1	0	0
NCOA7	135112	broad.mit.edu	37	6	126210093	126210093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:126210093C>T	uc010kes.2	+	11	1342	c.893C>T	c.(892-894)CCT>CTT	p.P298L	NCOA7_uc003qae.3_Missense_Mutation_p.P298L|NCOA7_uc003qah.2_Intron|NCOA7_uc003qai.2_Missense_Mutation_p.P298L|NCOA7_uc010ket.2_Intron	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	298					cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		AGTGACCTACCTCAGGATCTT	0.333													19	22					0	0	1	0	0
RNF146	81847	broad.mit.edu	37	6	127608726	127608726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:127608726C>T	uc003qav.2	+	3	1127	c.968C>T	c.(967-969)CCC>CTC	p.P323L	RNF146_uc003qat.2_Missense_Mutation_p.P322L|RNF146_uc003qau.2_Missense_Mutation_p.P322L|RNF146_uc003qaw.2_Missense_Mutation_p.P322L	NM_030963	NP_112225	Q9NTX7	RN146_HUMAN	ring finger protein 146	323					positive regulation of canonical Wnt receptor signaling pathway|protein autoubiquitination|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol	poly-ADP-D-ribose binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1				GBM - Glioblastoma multiforme(226;0.0407)|all cancers(137;0.2)		CAGACAGTACCCGATCGATCA	0.488													12	22					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128150661	128150661	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:128150661C>T	uc003qbi.2	-	4	988	c.669G>A	c.(667-669)CTG>CTA	p.L223L	THEMIS_uc010kfa.2_Silent_p.L126L|THEMIS_uc011ebt.1_Silent_p.L223L|THEMIS_uc010kfb.2_Silent_p.L188L	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	223	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GCTTGAGAATCAGGGTACCAT	0.373													13	23					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128176322	128176322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:128176322C>T	uc003qbi.2	-	3	422	c.103G>A	c.(103-105)GAA>AAA	p.E35K	THEMIS_uc010kfa.2_5'UTR|THEMIS_uc011ebt.1_Missense_Mutation_p.E35K|THEMIS_uc010kfb.2_5'UTR	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	35	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CCAAACATTTCATAAATAGAG	0.284													6	9					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128298085	128298085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:128298085C>T	uc003qbk.2	-	26	4190	c.3823G>A	c.(3823-3825)GAA>AAA	p.E1275K	PTPRK_uc003qbj.2_Missense_Mutation_p.E1276K|PTPRK_uc010kfc.2_Missense_Mutation_p.E1282K|PTPRK_uc011ebu.1_Missense_Mutation_p.E1298K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1275	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AAGTCGACTTCGTTTAACATC	0.368													6	12					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128330329	128330329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:128330329C>T	uc003qbk.2	-	14	2643	c.2276G>A	c.(2275-2277)GGA>GAA	p.G759E	PTPRK_uc003qbj.2_Missense_Mutation_p.G760E|PTPRK_uc010kfc.2_Missense_Mutation_p.G760E|PTPRK_uc011ebu.1_Missense_Mutation_p.G760E|PTPRK_uc003qbl.1_Missense_Mutation_p.G630E|PTPRK_uc011ebv.1_Missense_Mutation_p.G760E	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	759	Helical; (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CACCAAAATTCCAGCACTAAT	0.408													11	47					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128404936	128404936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:128404936C>T	uc003qbk.2	-	9	1866	c.1499G>A	c.(1498-1500)GGA>GAA	p.G500E	PTPRK_uc003qbj.2_Missense_Mutation_p.G500E|PTPRK_uc010kfc.2_Missense_Mutation_p.G500E|PTPRK_uc011ebu.1_Missense_Mutation_p.G500E|PTPRK_uc003qbl.1_Missense_Mutation_p.G370E|PTPRK_uc011ebv.1_Missense_Mutation_p.G500E	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	500	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AAAGGATGTTCCTTGAAGAGA	0.338													17	22					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129618920	129618920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:129618920G>A	uc003qbn.2	+	21	3052	c.2947G>A	c.(2947-2949)GGA>AGA	p.G983R	LAMA2_uc003qbo.2_Missense_Mutation_p.G983R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	983	Laminin EGF-like 10.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGAAGAGAGTGGACAATGTTG	0.512													13	13					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129704298	129704298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:129704298C>T	uc003qbn.2	+	35	5096	c.4991C>T	c.(4990-4992)ACC>ATC	p.T1664I	LAMA2_uc003qbo.2_Missense_Mutation_p.T1664I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1664	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GGCGAGCAGACCGGACAGGAT	0.458													14	21					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762131	130762131	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:130762131G>C	uc003qca.2	+	3	1435	c.564G>C	c.(562-564)TTG>TTC	p.L188F	TMEM200A_uc010kfh.2_Missense_Mutation_p.L188F|TMEM200A_uc010kfi.2_Missense_Mutation_p.L188F|TMEM200A_uc003qcb.2_Missense_Mutation_p.L188F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	188	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		ACACTGGTTTGATGGGAGAAA	0.448													7	13					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762623	130762623	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:130762623G>A	uc003qca.2	+	3	1927	c.1056G>A	c.(1054-1056)GGG>GGA	p.G352G	TMEM200A_uc010kfh.2_Silent_p.G352G|TMEM200A_uc010kfi.2_Silent_p.G352G|TMEM200A_uc003qcb.2_Silent_p.G352G	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	352	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		ATTCCATTGGGGAGTCGTTGT	0.517													15	18					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762727	130762727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:130762727C>T	uc003qca.2	+	3	2031	c.1160C>T	c.(1159-1161)TCC>TTC	p.S387F	TMEM200A_uc010kfh.2_Missense_Mutation_p.S387F|TMEM200A_uc010kfi.2_Missense_Mutation_p.S387F|TMEM200A_uc003qcb.2_Missense_Mutation_p.S387F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	387	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TCCAATACATCCTTGCATTTG	0.527													15	21					0	0	1	0	0
EPB41L2	2037	broad.mit.edu	37	6	131277427	131277427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:131277427C>T	uc003qch.2	-	2	381	c.199G>A	c.(199-201)GAA>AAA	p.E67K	EPB41L2_uc003qcg.1_Missense_Mutation_p.E67K|EPB41L2_uc011eby.1_Missense_Mutation_p.E67K|EPB41L2_uc003qci.2_Missense_Mutation_p.E67K|EPB41L2_uc010kfk.2_Missense_Mutation_p.E67K|EPB41L2_uc010kfl.1_Missense_Mutation_p.E67K	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	67					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TCCGATGTTTCCTTCTCTCTC	0.363													27	32					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132171144	132171144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:132171144G>A	uc011ecf.1	+	3	348	c.328G>A	c.(328-330)GGT>AGT	p.G110S		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	110	SMB 1.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	AAGTTGCAAAGGTCGCTGTTT	0.378													20	18					0	0	1	0	0
TAAR2	9287	broad.mit.edu	37	6	132938576	132938576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:132938576C>T	uc003qdl.1	-	2	769	c.769G>A	c.(769-771)GAC>AAC	p.D257N	TAAR2_uc010kfr.1_Missense_Mutation_p.D212N	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	257	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		GCTTTTTTGTCTTTCTTCACT	0.328													7	9					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133072583	133072583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:133072583G>A	uc003qdt.2	-	5	912	c.901C>T	c.(901-903)CTT>TTT	p.L301F	VNN2_uc003qds.2_Missense_Mutation_p.L10F|VNN2_uc010kgb.2_Intron|VNN2_uc003qdv.2_Missense_Mutation_p.L248F	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	301	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		ACCTCTGAAAGGAGAAGTTTT	0.433													24	32					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133078628	133078628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:133078628C>T	uc003qdt.2	-	2	282	c.271G>A	c.(271-273)GAA>AAA	p.E91K	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Missense_Mutation_p.E91K|VNN2_uc003qdv.2_Missense_Mutation_p.E38K	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	91	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		AAAACAGTTTCCCTGGTAAAT	0.403													16	17					0	0	1	0	0
SGK1	6446	broad.mit.edu	37	6	134495211	134495211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:134495211C>T	uc003qen.3	-	3	249	c.160G>A	c.(160-162)GTT>ATT	p.V54I	SGK1_uc003qeo.3_Missense_Mutation_p.V149I|SGK1_uc011ect.1_Missense_Mutation_p.V44I|SGK1_uc011ecu.1_Missense_Mutation_p.V54I|SGK1_uc011ecv.1_Missense_Mutation_p.V68I|SGK1_uc011ecw.1_Missense_Mutation_p.V82I	NM_005627	NP_005618	O00141	SGK1_HUMAN	serum/glucocorticoid regulated kinase 1 isoform	54	Necessary for localization to the cytoplasm.				apoptosis|response to stress|sodium ion transport	endoplasmic reticulum|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(3)|stomach(1)|lung(1)|central_nervous_system(1)	6	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00317)|GBM - Glioblastoma multiforme(68;0.00847)		ATGGACTGAACTTCAGGGCTG	0.498													19	27					0	0	1	0	0
AHI1	54806	broad.mit.edu	37	6	135787487	135787487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:135787487G>A	uc003qgi.2	-	7	598	c.214C>T	c.(214-216)CCC>TCC	p.P72S	AHI1_uc003qgh.2_Missense_Mutation_p.P72S|AHI1_uc003qgj.2_Missense_Mutation_p.P72S|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Missense_Mutation_p.P72S	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	72						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		TTAATATGGGGAAGATTGCTT	0.333													41	59					0	0	1	0	0
PDE7B	27115	broad.mit.edu	37	6	136472298	136472298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:136472298G>A	uc003qgp.2	+	6	686	c.383G>A	c.(382-384)GGA>GAA	p.G128E	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.G180E	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	128					signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	TTTCCTGCAGGAAACAGCCTG	0.373													10	15					0	0	1	0	0
MAP7	9053	broad.mit.edu	37	6	136667103	136667103	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:136667103G>A	uc003qgz.2	-	17	2376	c.2130C>T	c.(2128-2130)ACC>ACT	p.T710T	MAP7_uc011edf.1_Silent_p.T695T|MAP7_uc011edg.1_Silent_p.T740T|MAP7_uc010kgu.2_Silent_p.T732T|MAP7_uc011edh.1_Silent_p.T695T|MAP7_uc010kgv.2_Silent_p.T732T|MAP7_uc010kgs.2_Silent_p.T564T|MAP7_uc011edi.1_Silent_p.T564T|MAP7_uc010kgq.1_Silent_p.T616T|MAP7_uc003qha.1_Silent_p.T673T	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	710					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		TCTCACTGTTGGTGACATCTA	0.398													10	15					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584480	138584480	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:138584480G>A	uc003qhu.2	+	12	1860	c.1860G>A	c.(1858-1860)AAG>AAA	p.K620K		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	620	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CAGCAGAAAAGGACTCGGGCA	0.522													39	65					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139564069	139564069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:139564069C>T	uc011eds.1	-	10	1814	c.1649G>A	c.(1648-1650)CGG>CAG	p.R550Q		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	550						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		CTCTGAATCCCGTGAAGGGAT	0.592													29	34					0	0	1	0	0
GPR126	57211	broad.mit.edu	37	6	142630688	142630688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:142630688C>T	uc010khc.2	+	2	421	c.10C>T	c.(10-12)CGC>TGC	p.R4C	GPR126_uc010khd.2_Missense_Mutation_p.R4C|GPR126_uc010khe.2_Missense_Mutation_p.R4C|GPR126_uc010khf.2_Missense_Mutation_p.R4C|GPR126_uc003qix.2_Missense_Mutation_p.R4C	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	4					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		CAGGATGTTTCGCTCAGATCG	0.398													8	6					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143074868	143074868	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:143074868G>A	uc003qjd.2	-	10	7460	c.6717C>T	c.(6715-6717)TCC>TCT	p.S2239S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CTGGCGGCATGGAGTGAACCA	0.552													23	15					0	0	1	0	0
PHACTR2	9749	broad.mit.edu	37	6	144086593	144086593	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:144086593C>G	uc003qjq.3	+	6	987	c.857C>G	c.(856-858)TCT>TGT	p.S286C	PHACTR2_uc010khh.2_Missense_Mutation_p.S206C|PHACTR2_uc010khi.2_Missense_Mutation_p.S297C|PHACTR2_uc003qjr.3_Missense_Mutation_p.S217C	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	286							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		ACAACAACTTCTGGCACATCC	0.512													18	17					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146351039	146351039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:146351039C>T	uc010khw.1	+	2	856	c.386C>T	c.(385-387)TCC>TTC	p.S129F	GRM1_uc010khu.1_Missense_Mutation_p.S129F|GRM1_uc010khv.1_Missense_Mutation_p.S129F|GRM1_uc003qll.2_Missense_Mutation_p.S129F|GRM1_uc011edz.1_Missense_Mutation_p.S129F|GRM1_uc011eea.1_Missense_Mutation_p.S129F	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	129	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCTCTGATTTCCATTCGAGAT	0.582													16	23					0	0	1	0	0
STXBP5	134957	broad.mit.edu	37	6	147703923	147703923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:147703923C>T	uc003qlz.2	+	27	3364	c.3203C>T	c.(3202-3204)TCG>TTG	p.S1068L	STXBP5_uc010khz.1_Missense_Mutation_p.S1032L|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Missense_Mutation_p.S723L	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	1068					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		GTTGGAGAATCGTCCTCAGGA	0.383													39	59					0	0	1	0	0
KATNA1	11104	broad.mit.edu	37	6	149959630	149959630	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:149959630C>A	uc003qmr.1	-	1	99	c.54G>T	c.(52-54)TTG>TTT	p.L18F	KATNA1_uc003qms.2_Missense_Mutation_p.L18F|KATNA1_uc003qmt.2_Missense_Mutation_p.L18F|KATNA1_uc011eed.1_Missense_Mutation_p.L18F	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	18	Interaction with microtubule.|Interaction with KATNB1.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		AGTTTCCCAGCAATGCATATT	0.363													35	46					1.60099e-16	1.61728e-16	1	1	0
LATS1	9113	broad.mit.edu	37	6	150005324	150005324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:150005324G>A	uc003qmu.1	-	4	1449	c.901C>T	c.(901-903)CCT>TCT	p.P301S	LATS1_uc010kif.1_Missense_Mutation_p.P196S|LATS1_uc003qmv.1_Missense_Mutation_p.P301S|LATS1_uc003qmw.2_Missense_Mutation_p.P301S|LATS1_uc010kig.1_Missense_Mutation_p.P196S	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	301					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		GGTGGTGGAGGATAGCCCTCT	0.493													30	27					0	0	1	0	0
RAET1K	646024	broad.mit.edu	37	6	150321202	150321202	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:150321202C>T	uc003qnq.2	-	3		c.1017G>A				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						CCCACATTACCTGTCACTCTA	0.567													3	4					0	0	1	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151152722	151152722	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:151152722G>A	uc003qny.1	+	16	2787	c.2475G>A	c.(2473-2475)AAG>AAA	p.K825K	PLEKHG1_uc011eel.1_Silent_p.K865K|PLEKHG1_uc011eem.1_Silent_p.K884K|PLEKHG1_uc003qnz.2_Silent_p.K825K	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	825					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TGCCTCATAAGCCTGTATCTG	0.458													20	44					0	0	1	0	0
C6orf97	80129	broad.mit.edu	37	6	151859387	151859387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:151859387G>A	uc003qol.2	+	3	483	c.394G>A	c.(394-396)GAG>AAG	p.E132K		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	132	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		TGCAATCAAGGAGAACCAGGA	0.358													9	14					0	0	1	0	0
ESR1	2099	broad.mit.edu	37	6	152382190	152382190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:152382190C>T	uc003qom.3	+	8	1670	c.1300C>T	c.(1300-1302)CGG>TGG	p.R434W	ESR1_uc010kin.2_Missense_Mutation_p.R434W|ESR1_uc010kio.2_Missense_Mutation_p.R436W|ESR1_uc010kip.2_Missense_Mutation_p.R433W|ESR1_uc003qon.3_Missense_Mutation_p.R434W|ESR1_uc003qoo.3_Missense_Mutation_p.R434W|ESR1_uc010kiq.2_Missense_Mutation_p.R32W|ESR1_uc010kir.2_Missense_Mutation_p.R173W|ESR1_uc011eet.1_Intron|ESR1_uc011eeu.1_RNA|ESR1_uc011eev.1_Intron|ESR1_uc011eew.1_Intron|ESR1_uc010kis.2_Missense_Mutation_p.R103W|ESR1_uc011eex.1_Intron|ESR1_uc010kit.1_3'UTR|ESR1_uc011eey.1_Missense_Mutation_p.R171W	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	434	Steroid-binding.|Interaction with AKAP13.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	TACATCATCTCGGTTCCGCAT	0.388													13	10					0	0	1	0	0
IPCEF1	26034	broad.mit.edu	37	6	154480970	154480970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:154480970G>A	uc003qpx.2	-	12	1463	c.1307C>T	c.(1306-1308)TCC>TTC	p.S436F	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpv.2_Missense_Mutation_p.S307F|IPCEF1_uc003qpw.2_Missense_Mutation_p.S437F|IPCEF1_uc010kjh.2_Missense_Mutation_p.S437F	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	436					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						GTCTCAAATGGAATTTTCAAC	0.428													15	14					0	0	1	0	0
ARID1B	57492	broad.mit.edu	37	6	157528064	157528064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:157528064C>T	uc003qqn.2	+	20	5887	c.5735C>T	c.(5734-5736)CCT>CTT	p.P1912L	ARID1B_uc003qqo.2_Missense_Mutation_p.P1872L|ARID1B_uc003qqp.2_Missense_Mutation_p.P1859L	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1917					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GACGAGACTCCTCTGTGTACC	0.547													34	43					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158505173	158505173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:158505173C>T	uc003qqx.1	+	22	3250	c.3175C>T	c.(3175-3177)CTC>TTC	p.L1059F	SYNJ2_uc003qqw.1_Missense_Mutation_p.L1059F|SYNJ2_uc003qqy.1_Missense_Mutation_p.L772F|SYNJ2_uc003qqz.1_Missense_Mutation_p.L676F|SYNJ2_uc003qra.1_Missense_Mutation_p.L402F|SYNJ2_uc010kjp.1_5'Flank	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1059	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GTCACCTGCTCTCACCAAAAA	0.547													37	58					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158517028	158517028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:158517028G>A	uc003qqx.1	+	27	4198	c.4123G>A	c.(4123-4125)GGC>AGC	p.G1375S	SYNJ2_uc003qqy.1_Missense_Mutation_p.G1088S|SYNJ2_uc003qqz.1_Missense_Mutation_p.G992S|SYNJ2_uc003qra.1_Missense_Mutation_p.G718S|SYNJ2_uc010kjp.1_Missense_Mutation_p.G258S	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1375	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		ACCTGCCGCGGGCACCGTCTT	0.612													10	15					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159653489	159653489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:159653489G>A	uc010kjv.2	+	11	2145	c.1945G>A	c.(1945-1947)GAA>AAA	p.E649K	FNDC1_uc010kjw.1_Missense_Mutation_p.E534K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	649						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGACTCAGACGAAGATGAGCG	0.687													9	17					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159677661	159677661	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:159677661G>A	uc010kjv.2	+	18	5372	c.5172G>A	c.(5170-5172)ACG>ACA	p.T1724T		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1724	Fibronectin type-III 5.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCCCAACACGAGGTACGATG	0.423													24	31					0	0	1	0	0
PNLDC1	154197	broad.mit.edu	37	6	160229782	160229782	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160229782C>T	uc003qsx.1	+	8	711	c.540C>T	c.(538-540)GCC>GCT	p.A180A	PNLDC1_uc003qsy.1_Silent_p.A191A	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	180	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		GCTTCCAGGCCTTTGAGGTCC	0.597													5	10					0	0	1	0	0
SLC22A2	6582	broad.mit.edu	37	6	160662507	160662507	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160662507G>A	uc003qtf.2	-	9	1670	c.1500C>T	c.(1498-1500)TTC>TTT	p.F500F	SLC22A2_uc003qte.1_Silent_p.F500F	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	500	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		ATTTCTTACCGAAAACCATCA	0.428													15	15					0	0	1	0	0
SLC22A2	6582	broad.mit.edu	37	6	160677690	160677690	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160677690T>C	uc003qtf.2	-	2	644	c.474A>G	c.(472-474)GTA>GTG	p.V158V	SLC22A2_uc003qte.1_Silent_p.V158V|SLC22A2_uc003qth.1_Silent_p.V158V	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	158	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		TAAAGAATCCTACATTCACTG	0.453													27	45					0	0	1	0	0
SLC22A3	6581	broad.mit.edu	37	6	160831821	160831821	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160831821G>A	uc003qti.2	+	5	945	c.918G>A	c.(916-918)CAG>CAA	p.Q306Q	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	306						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		AAGCATTACAGATCCTGAGAC	0.428													13	22					0	0	1	0	0
SLC22A3	6581	broad.mit.edu	37	6	160864705	160864705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160864705G>A	uc003qti.2	+	9	1468	c.1441G>A	c.(1441-1443)GGA>AGA	p.G481R	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	481	Helical; (Potential).					integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		TGATTTTGGGGGAATCATAGC	0.398													8	24					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160953632	160953632	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:160953632C>A	uc003qtl.2	-	39	6012	c.5892G>T	c.(5890-5892)GAG>GAT	p.E1964D		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4472	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ACACTTCATTCTCAATAACAA	0.418													10	18					0.000442599	0.000443261	1	1	0
MAP3K4	4216	broad.mit.edu	37	6	161536254	161536254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:161536254G>A	uc003qtn.2	+	26	4868	c.4726G>A	c.(4726-4728)GAC>AAC	p.D1576N	MAP3K4_uc003qto.2_Missense_Mutation_p.D1526N|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.D1029N|MAP3K4_uc003qtp.2_Missense_Mutation_p.D512N|MAP3K4_uc003qtq.2_Missense_Mutation_p.D265N	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1576	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TGAAGGAAAGGACTTCCTTTC	0.473													7	25					0	0	1	0	0
PARK2	5071	broad.mit.edu	37	6	162683585	162683585	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:162683585C>T	uc003qtx.3	-	3	518	c.384G>A	c.(382-384)AGG>AGA	p.R128R	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_5'UTR|PARK2_uc003qty.3_Silent_p.R128R|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Silent_p.R128R	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	128					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		GTGAGTCCTTCCTGCTGTCAG	0.532													13	20					0	0	1	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166912059	166912059	+	Silent	SNP	G	A	A	rs144324870		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:166912059G>A	uc003qvb.1	-	8	903	c.684C>T	c.(682-684)CCC>CCT	p.P228P	RPS6KA2_uc011ego.1_Silent_p.P139P|RPS6KA2_uc010kkl.1_Silent_p.P139P|RPS6KA2_uc003qvc.1_Silent_p.P236P|RPS6KA2_uc003qvd.1_Silent_p.P253P	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	228	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		TCACCACCTCGGGCGCCATGT	0.612													13	24					0	0	1	0	0
UNC93A	54346	broad.mit.edu	37	6	167708075	167708075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:167708075C>T	uc003qvq.2	+	2	333	c.158C>T	c.(157-159)TCC>TTC	p.S53F	UNC93A_uc003qvr.2_Missense_Mutation_p.S53F	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	53	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		ATGCTCCTGTCCTCCATGTTC	0.617													43	53					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168348570	168348570	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:168348570C>T	uc003qwd.2	+	27	3709	c.3567C>T	c.(3565-3567)GCC>GCT	p.A1189A	MLLT4_uc003qwb.1_Silent_p.A1174A|MLLT4_uc003qwc.1_Silent_p.A1190A|MLLT4_uc003qwg.1_Silent_p.A499A	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1190					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GTGCATATGCCTCTGGAACAA	0.408			T	MLL	AL								12	11					0	0	1	0	0
C6orf70	55780	broad.mit.edu	37	6	170176089	170176089	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:170176089C>G	uc003qxg.1	+	15	1481	c.1448C>G	c.(1447-1449)ACG>AGG	p.T483R	C6orf70_uc011ehb.1_Missense_Mutation_p.T357R|C6orf70_uc003qxh.1_Missense_Mutation_p.T483R|C6orf70_uc010kky.1_Missense_Mutation_p.T357R|C6orf70_uc003qxi.1_Missense_Mutation_p.T131R	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	483						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		ACAAAAATGACGGATGAGCTG	0.378													11	19					0	0	1	0	0
TBP	6908	broad.mit.edu	37	6	170871064	170871064	+	Silent	SNP	G	A	A	rs112748399		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:170871064G>A	uc003qxt.2	+	3	472	c.240G>A	c.(238-240)CAG>CAA	p.Q80Q	TBP_uc003qxu.2_Silent_p.Q80Q|TBP_uc011ehf.1_Silent_p.Q60Q|TBP_uc011ehg.1_Silent_p.Q80Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	80	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.164													7	13					0	0	1	0	0
TBP	6908	broad.mit.edu	37	6	170871070	170871070	+	Silent	SNP	G	A	A	rs142508797	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:170871070G>A	uc003qxt.2	+	3	478	c.246G>A	c.(244-246)CAG>CAA	p.Q82Q	TBP_uc003qxu.2_Silent_p.Q82Q|TBP_uc011ehf.1_Silent_p.Q62Q|TBP_uc011ehg.1_Silent_p.Q82Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	82	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.174													8	10					0	0	1	0	0
PRKAR1B	5575	broad.mit.edu	37	7	750996	750996	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:750996G>A	uc003siu.1	-	3	253	c.147C>T	c.(145-147)TTC>TTT	p.F49F	PRKAR1B_uc003siv.2_Silent_p.F49F|PRKAR1B_uc003siw.1_Silent_p.F49F	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	49	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		GCTCCCGGAGGAACTTCATGG	0.647													16	124					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1474290	1474290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:1474290G>A	uc003skj.3	-	17	2804	c.2657C>T	c.(2656-2658)TCC>TTC	p.S886F	MICALL2_uc003skh.3_Silent_p.V93V|MICALL2_uc003ski.3_Silent_p.V371V	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	886						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		GCGGAACTTGGACTTCTTCCT	0.632													16	131					0	0	1	0	0
EIF3B	8662	broad.mit.edu	37	7	2409304	2409304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:2409304C>T	uc003slx.2	+	10	1684	c.1601C>T	c.(1600-1602)CCG>CTG	p.P534L	EIF3B_uc003sly.2_Missense_Mutation_p.P534L|EIF3B_uc003sma.2_Missense_Mutation_p.P262L	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	534					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		GATAGGACTCCGAAAGGCACC	0.483													55	88					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2953033	2953033	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:2953033G>A	uc003smv.2	-	22	3311	c.2907C>T	c.(2905-2907)TTC>TTT	p.F969F		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	969					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GCTCGCAGTAGAAGGCGCGTA	0.662			Mis		DLBCL								14	93					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2969694	2969694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:2969694C>T	uc003smv.2	-	12	1989	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	529					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GTGCCTTCTTCCTCGTGCCCC	0.393			Mis		DLBCL								28	81					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4091446	4091446	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:4091446C>T	uc003smx.2	+	19	3034	c.2895C>T	c.(2893-2895)GTC>GTT	p.V965V	SDK1_uc010kso.2_Silent_p.V241V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	965	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTCAGCTGGTCTGGACTCAGG	0.522													86	129					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4169671	4169671	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:4169671C>T	uc003smx.2	+	27	4210	c.4071C>T	c.(4069-4071)ACC>ACT	p.T1357T	SDK1_uc010kso.2_Silent_p.T633T|SDK1_uc003smy.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1357	Fibronectin type-III 7.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGGCGTTCACCCGCATCGGGA	0.672													12	118					0	0	1	0	0
RBAK	57786	broad.mit.edu	37	7	5104829	5104829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:5104829C>T	uc010kss.1	+	6	2066	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.S581F	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	581	C2H2-type 12.|Interaction with AR.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		CATAATTCATCCCTCTTCAGA	0.363													44	23					0	0	1	0	0
ACTB	60	broad.mit.edu	37	7	5568198	5568198	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:5568198G>A	uc003sos.3	-	3	552	c.516C>T	c.(514-516)CCC>CCT	p.P172P	ACTB_uc003sor.3_Silent_p.P50P|ACTB_uc003sot.3_Silent_p.P172P|ACTB_uc003soq.3_Silent_p.P50P|ACTB_uc010ksy.2_Silent_p.P50P	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	172					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		GGATGGCATGGGGGAGGGCAT	0.637													64	144					0	0	1	0	0
FSCN1	6624	broad.mit.edu	37	7	5633106	5633106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:5633106C>T	uc003sou.2	+	1	653	c.539C>T	c.(538-540)GCC>GTC	p.A180V		NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	180					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		ATCACCCTCGCCTTCCAGGAC	0.736													24	49					0	0	1	0	0
RSPH10B2	728194	broad.mit.edu	37	7	6006543	6006543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:6006543C>T	uc003sph.1	-	3	476	c.205G>A	c.(205-207)GAT>AAT	p.D69N	RSPH10B2_uc010ktd.1_Missense_Mutation_p.D69N	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	69										ovary(1)|pancreas(1)|skin(1)	3						TGGGTGGCATCTTCGTTCTGC	0.498													38	175					0	0	1	0	0
USP42	84132	broad.mit.edu	37	7	6196598	6196598	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:6196598G>A	uc011jwo.1	+	16	3978	c.3855G>A	c.(3853-3855)CTG>CTA	p.L1285L	USP42_uc011jwp.1_Silent_p.L1285L|USP42_uc011jwq.1_Silent_p.L1092L	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	1285					cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|ovary(1)|pancreas(1)|breast(1)	5		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)		GCCCGCCTCTGGAAGGCGTCG	0.557													16	46					0	0	1	0	0
C7orf70	84792	broad.mit.edu	37	7	6370174	6370174	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:6370174C>T	uc003spu.2	-	2	1080	c.612G>A	c.(610-612)CTG>CTA	p.L204L		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	204						nucleus					0						TCTCCTCACTCAGGAGCACTT	0.483													99	74					0	0	1	0	0
RAC1	5879	broad.mit.edu	37	7	6431659	6431659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:6431659C>T	uc003spx.2	+	3	453	c.212C>T	c.(211-213)TCC>TTC	p.S71F	RAC1_uc003spw.2_Missense_Mutation_p.S71F	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	71					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CGCCCCCTATCCTATCCGCAA	0.408													24	154					0	0	1	0	0
ZNF12	7559	broad.mit.edu	37	7	6731530	6731530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:6731530G>A	uc003sqt.1	-	5	1597	c.1043C>T	c.(1042-1044)TCA>TTA	p.S348L	ZNF12_uc011jxa.1_Missense_Mutation_p.S186L|ZNF12_uc003sqs.1_Missense_Mutation_p.S310L	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	348					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		CTTCTCTCCTGAGTGAGTTCT	0.428													10	100					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7480447	7480447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:7480447C>T	uc003src.1	-	21	1813	c.1696G>A	c.(1696-1698)GGA>AGA	p.G566R	COL28A1_uc011jxe.1_Missense_Mutation_p.G249R|COL28A1_uc003srd.2_Missense_Mutation_p.G121R	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	566	Collagen-like 5.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCTGGAAGTCCCCTCTGTCCT	0.388													46	78					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8181422	8181422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:8181422G>A	uc003srm.2	-	10	995	c.928C>T	c.(928-930)CAG>TAG	p.Q310*	ICA1_uc010ktr.2_Nonsense_Mutation_p.Q339*|ICA1_uc003srl.2_Nonsense_Mutation_p.Q298*|ICA1_uc003srn.3_Nonsense_Mutation_p.Q236*|ICA1_uc003srp.3_Nonsense_Mutation_p.Q309*|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Nonsense_Mutation_p.Q310*|ICA1_uc003srr.2_Nonsense_Mutation_p.Q309*|ICA1_uc003sro.3_Nonsense_Mutation_p.Q310*	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	310					neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TCCTTGCGCTGGTTTTCTTCC	0.289													8	46					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11076123	11076123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:11076123C>T	uc003sry.1	+	9	2116	c.1681C>T	c.(1681-1683)CCA>TCA	p.P561S	PHF14_uc011jxi.1_Missense_Mutation_p.P276S|PHF14_uc003srz.2_Missense_Mutation_p.P561S|PHF14_uc011jxj.1_Missense_Mutation_p.P276S	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	561							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		GGCCTGGGTTCCAAGGGAAAA	0.473													19	52					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11445951	11445951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:11445951C>T	uc003ssf.3	-	21	4465	c.4213G>A	c.(4213-4215)GAA>AAA	p.E1405K		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1405	TSP type-1 14.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CTGCAGGATTCCTCCAGAACC	0.423										HNSCC(18;0.044)			78	117					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11633007	11633007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:11633007G>A	uc003ssf.3	-	3	1397	c.1145C>T	c.(1144-1146)CCT>CTT	p.P382L		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	382	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		AGTGCCTGCAGGGGACACCAT	0.502										HNSCC(18;0.044)			10	84					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11633061	11633061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:11633061G>A	uc003ssf.3	-	3	1343	c.1091C>T	c.(1090-1092)TCC>TTC	p.S364F		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	364	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TGACCACTCGGAAACCTGGCA	0.493										HNSCC(18;0.044)			16	120					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14647118	14647118	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:14647118G>A	uc003ssz.2	-	16	1564	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	DGKB_uc011jxt.1_Silent_p.F440F|DGKB_uc003sta.2_Silent_p.F459F|DGKB_uc011jxu.1_Silent_p.F458F	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	459	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ATAGATACTGGAATTTTCTGT	0.274													7	71					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14880876	14880876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:14880876C>T	uc003ssz.2	-	1	200	c.13G>A	c.(13-15)GAA>AAA	p.E5K	DGKB_uc011jxt.1_Missense_Mutation_p.E5K|DGKB_uc003sta.2_Missense_Mutation_p.E5K|DGKB_uc011jxu.1_Missense_Mutation_p.E5K|DGKB_uc011jxv.1_Missense_Mutation_p.E5K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	5					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GCCCATTTTTCCTGGTTTGTC	0.403													31	11					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18633627	18633627	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:18633627G>A	uc003suh.2	+	5	671	c.630G>A	c.(628-630)AAG>AAA	p.K210K	HDAC9_uc003sue.2_Silent_p.K210K|HDAC9_uc011jyd.1_Silent_p.K210K|HDAC9_uc003sui.2_Silent_p.K213K|HDAC9_uc003suj.2_Silent_p.K213K|HDAC9_uc011jya.1_Silent_p.K251K|HDAC9_uc003sua.1_Silent_p.K232K|HDAC9_uc011jyb.1_Silent_p.K210K|HDAC9_uc003sud.1_Silent_p.K210K|HDAC9_uc011jyc.1_Silent_p.K213K|HDAC9_uc003suf.1_Silent_p.K241K|HDAC9_uc010kud.1_Silent_p.K213K|HDAC9_uc011jye.1_Silent_p.K182K|HDAC9_uc011jyf.1_Silent_p.K177K|HDAC9_uc010kue.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	210	Interaction with MAPK10 (By similarity).				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AAGATGCAAAGGATGATTTCC	0.453													22	126					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18705938	18705938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:18705938C>T	uc003suh.2	+	11	1602	c.1561C>T	c.(1561-1563)CCC>TCC	p.P521S	HDAC9_uc003sue.2_Missense_Mutation_p.P521S|HDAC9_uc011jyd.1_Missense_Mutation_p.P521S|HDAC9_uc003sui.2_Missense_Mutation_p.P524S|HDAC9_uc003suj.2_Missense_Mutation_p.P480S|HDAC9_uc011jya.1_Missense_Mutation_p.P518S|HDAC9_uc003sua.1_Missense_Mutation_p.P499S|HDAC9_uc011jyb.1_Missense_Mutation_p.P477S|HDAC9_uc003sud.1_Missense_Mutation_p.P521S|HDAC9_uc011jyc.1_Missense_Mutation_p.P480S|HDAC9_uc003suf.1_Missense_Mutation_p.P552S|HDAC9_uc010kud.1_Missense_Mutation_p.P524S|HDAC9_uc011jye.1_Missense_Mutation_p.P493S|HDAC9_uc011jyf.1_Missense_Mutation_p.P444S|HDAC9_uc010kue.1_Intron	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	521					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AGACAGAGCGCCCTCTAGTGG	0.547											OREG0017877	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	143					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18788706	18788706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:18788706G>A	uc003suh.2	+	13	2020	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q	HDAC9_uc003sue.2_Missense_Mutation_p.R660Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R660Q|HDAC9_uc003sui.2_Missense_Mutation_p.R663Q|HDAC9_uc003suj.2_Missense_Mutation_p.R619Q|HDAC9_uc003sua.1_Missense_Mutation_p.R638Q|HDAC9_uc010kue.1_Missense_Mutation_p.R315Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	660	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CATGCTGGACGAATACAGAGT	0.433													5	50					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20698150	20698150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20698150G>A	uc003suw.3	+	5	769	c.223G>A	c.(223-225)GAA>AAA	p.E75K	ABCB5_uc010kuh.2_Missense_Mutation_p.E520K|ABCB5_uc003suv.3_Missense_Mutation_p.E75K|ABCB5_uc011jyi.1_Missense_Mutation_p.E75K	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	75	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATTGGTAGGGGAAAAAGGAGC	0.418													49	13					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20739682	20739682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20739682G>A	uc003suw.3	+	10	1472	c.926G>A	c.(925-927)GGA>GAA	p.G309E	ABCB5_uc010kuh.2_Missense_Mutation_p.G754E	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	309	Helical; (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GCTTTTCAGGGATTATTTTAC	0.313													16	72					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20762657	20762657	+	Missense_Mutation	SNP	G	A	A	rs139378066		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20762657G>A	uc003suw.3	+	12	1651	c.1105G>A	c.(1105-1107)GGC>AGC	p.G369S	ABCB5_uc010kuh.2_Missense_Mutation_p.G814S|ABCB5_uc003sux.1_5'UTR	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	369	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TTCCAGGATTGGCGTCTTAAC	0.358													12	96					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20766725	20766725	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20766725C>T	uc003suw.3	+	13	1899	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	ABCB5_uc010kuh.2_Silent_p.F896F|ABCB5_uc003sux.1_Silent_p.F74F	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	451	Cytoplasmic (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AAAAAGCCTTCGAGCAAATGT	0.323													21	50					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20793112	20793112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20793112G>A	uc003suw.3	+	18	2770	c.2224G>A	c.(2224-2226)GAT>AAT	p.D742N	ABCB5_uc010kuh.2_Missense_Mutation_p.D1187N	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	742	Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TTCAGCCCTCGATAATGACAG	0.393													31	84					0	0	1	0	0
SP8	221833	broad.mit.edu	37	7	20825373	20825373	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20825373G>A	uc003suy.2	-	3	250	c.9C>T	c.(7-9)GCC>GCT	p.A3A	SP8_uc003suz.2_Silent_p.A21A	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACAGGTAGCGGCAAGCATGG	0.627													35	55					0	0	1	0	0
RPL23P8	222901	broad.mit.edu	37	7	20867088	20867088	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:20867088G>A	uc011jyj.1	+	1		c.172G>A				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						TCAAGGGACGGCTGAACAGAC	0.512													11	70					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21627698	21627698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21627698G>A	uc003svc.2	+	10	1758	c.1727G>A	c.(1726-1728)GGA>GAA	p.G576E		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	576	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACCATATTTGGAAATTTTCTA	0.358									Kartagener_syndrome				31	29					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21641176	21641176	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21641176G>A	uc003svc.2	+	18	3619	c.3588G>A	c.(3586-3588)ACG>ACA	p.T1196T		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1196	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TAAAAGAAACGATCACCCTCT	0.398									Kartagener_syndrome				8	33					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21698479	21698479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21698479G>A	uc003svc.2	+	30	5204	c.5173G>A	c.(5173-5175)GAA>AAA	p.E1725K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1725	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTCTATAACAGAAGCCATAGT	0.438									Kartagener_syndrome				6	18					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21818633	21818633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21818633C>T	uc003svc.2	+	58	9446	c.9415C>T	c.(9415-9417)CAT>TAT	p.H3139Y		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3139	Stalk (By similarity).|Potential.				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACTGAGAAATCATGATGCCGA	0.488									Kartagener_syndrome				46	24					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21856132	21856132	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21856132G>A	uc003svc.2	+	65	10432	c.10401G>A	c.(10399-10401)ACG>ACA	p.T3467T		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3467	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CCATGTTGACGGATGATGCTA	0.478									Kartagener_syndrome				14	27					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21908575	21908575	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:21908575A>T	uc003svc.2	+	74	11985	c.11954A>T	c.(11953-11955)AAA>ATA	p.K3985I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3985	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCCCTGGAGAAAGCTTCCAAA	0.512									Kartagener_syndrome				34	76					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24690159	24690159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:24690159G>A	uc003swx.2	+	6	778	c.479G>A	c.(478-480)GGG>GAG	p.G160E	MPP6_uc003swy.2_Missense_Mutation_p.G160E	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	160	PDZ.				protein complex assembly		protein binding				0						ATCCTCCATGGGGGAATGATA	0.353													29	62					0	0	1	0	0
OSBPL3	26031	broad.mit.edu	37	7	24846501	24846501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:24846501C>T	uc003sxf.2	-	21	2743	c.2338G>A	c.(2338-2340)GAG>AAG	p.E780K	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.E744K|OSBPL3_uc003sxh.2_Missense_Mutation_p.E749K|OSBPL3_uc003sxi.2_Missense_Mutation_p.E713K	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	780					lipid transport		lipid binding|protein binding			skin(1)	1						TAGTATTGCTCGTAGCCTTTC	0.378													11	144					0	0	1	0	0
OSBPL3	26031	broad.mit.edu	37	7	24880359	24880359	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:24880359A>T	uc003sxf.2	-	14	1850	c.1445T>A	c.(1444-1446)CTT>CAT	p.L482H	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.L446H|OSBPL3_uc003sxh.2_Missense_Mutation_p.L451H|OSBPL3_uc003sxi.2_Missense_Mutation_p.L415H|OSBPL3_uc003sxj.1_Missense_Mutation_p.L211H|OSBPL3_uc003sxk.1_Missense_Mutation_p.L180H	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	482					lipid transport		lipid binding|protein binding			skin(1)	1						ATCTAAGGAAAGATTATCACT	0.294													14	31					0	0	1	0	0
C7orf31	136895	broad.mit.edu	37	7	25176300	25176300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:25176300G>A	uc003sxn.1	-	10	1625	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F	C7orf31_uc003sxm.1_Missense_Mutation_p.S197F	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	355											0						ATCTGGACAGGAACGTGGTCT	0.463													31	228					0	0	1	0	0
HOXA9	3205	broad.mit.edu	37	7	27204695	27204695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:27204695G>A	uc003syt.2	-	1	455	c.382C>T	c.(382-384)CGG>TGG	p.R128W		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	128							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						CCATAAGGCCGGCTGGAGGGC	0.662			T	NUP98|MSI2	AML*								7	38					0	0	1	0	0
HOXA11	3207	broad.mit.edu	37	7	27222489	27222489	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:27222489G>A	uc003syx.2	-	2	940	c.868C>T	c.(868-870)CAG>TAG	p.Q290*	HOXA10_uc003syw.3_5'Flank|HOXA11_uc003syy.2_RNA|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	290	Homeobox.				branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.Q290*(1)		lung(1)|breast(1)	2						CTCCTGTTCTGAAACCAGATT	0.463			T	NUP98	CML								96	49					0	0	1	0	0
HIBADH	11112	broad.mit.edu	37	7	27671959	27671959	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:27671959G>A	uc003szf.2	-	3	553	c.358C>T	c.(358-360)CTA>TTA	p.L120L	HIBADH_uc003szg.2_Silent_p.L71L|HIBADH_uc003szh.2_Silent_p.L19L|HIBADH_uc003szi.2_Silent_p.L71L	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	120					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	ACATACTTTAGAATCCCATTT	0.348													191	457					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28610027	28610027	+	Silent	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:28610027C>A	uc003szq.2	+	5	726	c.336C>A	c.(334-336)CCC>CCA	p.P112P	CREB5_uc003szo.2_Silent_p.P79P|CREB5_uc003szr.2_Silent_p.P105P	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	112					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						TGACGGGGCCCGGAACTCACC	0.542													522	353					1.71739e-175	1.74474e-175	1	1	0
SCRN1	9805	broad.mit.edu	37	7	29983653	29983653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:29983653G>A	uc010kvp.2	-	3	688	c.484C>T	c.(484-486)CGT>TGT	p.R162C	SCRN1_uc011jzy.1_Missense_Mutation_p.R94C|SCRN1_uc003tak.2_Missense_Mutation_p.R162C|SCRN1_uc011jzz.1_Missense_Mutation_p.R162C|SCRN1_uc011kaa.1_Missense_Mutation_p.R182C|SCRN1_uc011jzw.1_Missense_Mutation_p.R94C|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	162					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						GCTTCATCACGATCCACAATC	0.498													82	58					0	0	1	0	0
FAM188B	84182	broad.mit.edu	37	7	30931614	30931614	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:30931614C>T	uc003tbt.2	+	18	2345	c.2268C>T	c.(2266-2268)ATC>ATT	p.I756I	FAM188B_uc010kwe.2_Silent_p.I727I|AQP1_uc011kac.1_Intron|FAM188B_uc003tbu.2_Silent_p.I276I	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	756											0						CAGACCCCATCCTGTGACCGT	0.557													174	93					0	0	1	0	0
GHRHR	2692	broad.mit.edu	37	7	31014622	31014622	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:31014622G>A	uc003tbx.2	+	9	897	c.849G>A	c.(847-849)TGG>TGA	p.W283*	GHRHR_uc003tbw.1_Nonsense_Mutation_p.W283*|GHRHR_uc003tby.2_Nonsense_Mutation_p.W219*|GHRHR_uc003tbz.2_Missense_Mutation_p.D50N	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	283	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	CCTACTGGTGGATCATCAAAG	0.587											OREG0017943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	77					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31124435	31124435	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:31124435C>T	uc003tca.1	+	8	745	c.522C>T	c.(520-522)ATC>ATT	p.I174I	ADCYAP1R1_uc003tcb.1_Silent_p.I153I|ADCYAP1R1_uc003tcc.1_Silent_p.I174I|ADCYAP1R1_uc003tcd.1_Silent_p.I174I|ADCYAP1R1_uc003tce.1_Silent_p.I174I|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	174	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CCATGGTCATCCTTTGTCGCT	0.572													38	131					0	0	1	0	0
CCDC129	223075	broad.mit.edu	37	7	31617891	31617891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:31617891C>T	uc003tcj.1	+	8	2006	c.1013C>T	c.(1012-1014)CCT>CTT	p.P338L	CCDC129_uc011kad.1_Missense_Mutation_p.P348L|CCDC129_uc003tci.1_Intron|CCDC129_uc011kae.1_Missense_Mutation_p.P364L|CCDC129_uc003tck.1_Missense_Mutation_p.P246L	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	338											0						AAGCAGTGGCCTTGCTCATCT	0.483													11	78					0	0	1	0	0
FKBP9	11328	broad.mit.edu	37	7	33044793	33044793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:33044793G>A	uc003tdh.2	+	10	1724	c.1543G>A	c.(1543-1545)GAG>AAG	p.E515K	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Missense_Mutation_p.E568K|FKBP9_uc011kam.1_Missense_Mutation_p.E283K	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	515	EF-hand 1.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			CCAGTTCTCAGAGTACATTCA	0.547													11	96					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34182945	34182945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:34182945C>T	uc011kap.1	+	14	1963	c.1849C>T	c.(1849-1851)CAC>TAC	p.H617Y		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	617					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CATCAAAGTCCACTGGGAGCC	0.478													38	53					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34851465	34851465	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:34851465C>T	uc003teg.1	+	4	596	c.468C>T	c.(466-468)TTC>TTT	p.F156F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F156F|NPSR1_uc010kwt.1_Silent_p.F3F|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Silent_p.F156F|NPSR1_uc010kww.1_Silent_p.F145F|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	156	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCATGAAGTTCCTTCAAGGAG	0.443													53	139					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35187464	35187464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:35187464G>A	uc003teq.1	-	8	1126	c.19C>T	c.(19-21)CAT>TAT	p.H7Y	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						AAACTTTCATGGAGAGGTGGT	0.358													3	12					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36580012	36580012	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:36580012G>A	uc003tfh.3	-	16	1620	c.1219C>T	c.(1219-1221)CTG>TTG	p.L407L	AOAH_uc010kxf.2_Silent_p.L407L|AOAH_uc011kba.1_Silent_p.L375L	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	407					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						CCATTGGGCAGGTGGGAATTT	0.458													22	70					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	36917628	36917628	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:36917628G>A	uc003tfk.1	-	19	2116	c.1809C>T	c.(1807-1809)TCC>TCT	p.S603S	ELMO1_uc003tfi.1_Silent_p.S123S|ELMO1_uc003tfj.1_Silent_p.S123S|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Silent_p.S507S|ELMO1_uc010kxg.1_Silent_p.S603S	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	603	PH.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TGTCCTGCAAGGAATCGTGGG	0.488													7	76					0	0	1	0	0
GPR141	353345	broad.mit.edu	37	7	37780319	37780319	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:37780319G>A	uc003tfm.1	+	1	324	c.324G>A	c.(322-324)GTG>GTA	p.V108V	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	108	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						TCTATGTGGTGATCCTGGTCA	0.483													121	62					0	0	1	0	0
SFRP4	6424	broad.mit.edu	37	7	37951818	37951818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:37951818G>A	uc003tfo.3	-	4	1080	c.694C>T	c.(694-696)CGA>TGA	p.R232*		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	232	NTR.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						ACTTGAGTTCGAGGGATGGGT	0.473													23	150					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39491250	39491250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:39491250C>T	uc003thb.1	+	8	1394	c.1352C>T	c.(1351-1353)TCC>TTC	p.S451F		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	451	Ser-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						tcctcttcttcctcctcatcc	0.463													8	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	39894684	39894684	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:39894684G>A	uc003thg.2	-	1		c.176C>T								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		CCTCCTGAGCGGACGGCGTTC	0.627													4	52					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43484094	43484094	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:43484094C>T	uc003tid.1	+	11	1928	c.1323C>T	c.(1321-1323)CTC>CTT	p.L441L	HECW1_uc011kbi.1_Silent_p.L441L	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	441					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CTGGGGAGCTCCTGGCCCAGG	0.617													34	12					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43484930	43484930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:43484930C>T	uc003tid.1	+	11	2764	c.2159C>T	c.(2158-2160)TCC>TTC	p.S720F	HECW1_uc011kbi.1_Missense_Mutation_p.S720F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	720					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						ACGCGCTTCTCCTCCGTGGAC	0.622													21	121					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43546829	43546829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:43546829G>A	uc003tid.1	+	22	4330	c.3725G>A	c.(3724-3726)GGA>GAA	p.G1242E	HECW1_uc011kbi.1_Missense_Mutation_p.G1208E	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1242					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GAAGCCAAAGGATTTGGTCAG	0.493													21	147					0	0	1	0	0
MYL7	58498	broad.mit.edu	37	7	44179950	44179950	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:44179950G>A	uc003tkg.2	-	4	282	c.270C>T	c.(268-270)TTC>TTT	p.F90F		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	90					actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						AGAGCGTGAGGAAGACGGTGA	0.542													14	190					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44186118	44186118	+	Silent	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:44186118G>C	uc003tkl.2	-	8	1433	c.963C>G	c.(961-963)TCC>TCG	p.S321S	GCK_uc003tkh.1_5'Flank|GCK_uc003tki.1_5'Flank|GCK_uc003tkj.1_Silent_p.S320S|GCK_uc003tkk.1_Silent_p.S322S	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	321					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GCAGCTGCTCGGAGGCCTCCC	0.647													317	177					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44191960	44191960	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:44191960C>T	uc003tkl.2	-	3	743	c.273G>A	c.(271-273)GTG>GTA	p.V91V	GCK_uc003tkj.1_Silent_p.V90V|GCK_uc003tkk.1_Silent_p.V92V	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	91					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CACCTTCTCCCACCTTCACCA	0.587													232	591					0	0	1	0	0
OGDH	4967	broad.mit.edu	37	7	44713500	44713500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:44713500G>A	uc003tln.2	+	6	857	c.748G>A	c.(748-750)GAG>AAG	p.E250K	OGDH_uc003tlm.2_Missense_Mutation_p.E250K|OGDH_uc011kbx.1_Missense_Mutation_p.E246K|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Missense_Mutation_p.E261K|OGDH_uc011kbz.1_Intron|OGDH_uc003tlo.1_Missense_Mutation_p.E83K	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	250					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CACAAATGAGGAGAAACGGAC	0.577													12	98					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44806154	44806154	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:44806154C>T	uc003tlr.2	+	18	2670	c.2547C>T	c.(2545-2547)GGC>GGT	p.G849G	ZMIZ2_uc003tlq.2_Silent_p.G791G|ZMIZ2_uc003tls.2_Silent_p.G823G|ZMIZ2_uc003tlt.2_Silent_p.G472G|ZMIZ2_uc010kyj.2_Silent_p.G371G|ZMIZ2_uc003tlu.2_Silent_p.G130G|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	849	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						AGTCCTTGGGCCAAGCGAGCT	0.657													82	53					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47882580	47882580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:47882580G>A	uc003tny.1	-	34	5425	c.5425C>T	c.(5425-5427)CCG>TCG	p.P1809S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1809	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AACCTGGCCGGAGCTCGGAAG	0.493													17	74					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48391906	48391906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:48391906C>T	uc003toq.2	+	31	10535	c.10510C>T	c.(10510-10512)CCT>TCT	p.P3504S	ABCA13_uc010kys.1_Missense_Mutation_p.P578S|ABCA13_uc003tos.1_Missense_Mutation_p.P330S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3504					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGTAAAAAACCCTTCTTGGAA	0.448													40	54					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48634331	48634331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:48634331C>T	uc003toq.2	+	58	14691	c.14666C>T	c.(14665-14667)CCC>CTC	p.P4889L	ABCA13_uc010kys.1_Missense_Mutation_p.P1964L|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.P619L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4889	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGGATGGATCCCTGCTCTAAG	0.488													68	95					0	0	1	0	0
COBL	23242	broad.mit.edu	37	7	51096790	51096790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:51096790G>A	uc003tpr.3	-	10	2188	c.2003C>T	c.(2002-2004)TCC>TTC	p.S668F	COBL_uc003tps.2_Missense_Mutation_p.S725F|COBL_uc011kcl.1_Missense_Mutation_p.S668F|COBL_uc003tpp.3_Missense_Mutation_p.S454F|COBL_uc003tpq.3_Missense_Mutation_p.S609F|COBL_uc003tpo.3_Missense_Mutation_p.S210F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	668										skin(3)|ovary(2)	5	Glioma(55;0.08)					CACCGGTTGGGAATTCACTCT	0.483													25	137					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103577	53103577	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53103577G>A	uc003tpz.2	+	1	229	c.213G>A	c.(211-213)CCG>CCA	p.P71P		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	71											0						GGGGGCGCCCGGTGCCCAGCA	0.716													14	25					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103700	53103700	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53103700C>T	uc003tpz.2	+	1	352	c.336C>T	c.(334-336)CTC>CTT	p.L112L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	112											0						GGCGAGACCTCTCCTGTGCCT	0.721													11	57					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103836	53103836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53103836G>A	uc003tpz.2	+	1	488	c.472G>A	c.(472-474)GCC>ACC	p.A158T		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	158											0						TGGACAGAGAgcccgccccgc	0.592													7	44					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103871	53103871	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53103871C>T	uc003tpz.2	+	1	523	c.507C>T	c.(505-507)CTC>CTT	p.L169L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	169											0						cccAGGAGCTCCTGGACCCCT	0.577													10	34					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104047	53104047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53104047C>T	uc003tpz.2	+	1	699	c.683C>T	c.(682-684)TCC>TTC	p.S228F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	228											0						GCGGTTGCTTCCTTCGTGCCC	0.642													31	68					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104185	53104185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:53104185C>T	uc003tpz.2	+	1	837	c.821C>T	c.(820-822)TCC>TTC	p.S274F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	274											0						ACAACGCCTTCCTGCGGCAGC	0.637													37	90					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612430	54612430	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:54612430C>T	uc010kzf.2	+	2	600	c.195C>T	c.(193-195)TTC>TTT	p.F65F	VSTM2A_uc010kze.2_Silent_p.F65F|VSTM2A_uc003tqc.3_Silent_p.F65F	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	65	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			AATGGTGGTTCCTGCGGGGGC	0.716													12	36					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55233016	55233016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:55233016C>T	uc003tqk.2	+	15	2012	c.1766C>T	c.(1765-1767)CCC>CTC	p.P589L	EGFR_uc003tqi.2_Missense_Mutation_p.P589L|EGFR_uc003tqj.2_Missense_Mutation_p.P589L|EGFR_uc010kzg.1_Missense_Mutation_p.P544L|EGFR_uc011kco.1_Missense_Mutation_p.P536L|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_RNA|EGFR_uc003tqn.2_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	589	Approximate.|Extracellular (Potential).			DGPH->AGPA: Decreases intramolecular interactions and facilitates EGF binding.	activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	ATTGACGGCCCCCACTGCGTC	0.532		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			38	58					0	0	1	0	0
LOC442308	442308	broad.mit.edu	37	7	55714469	55714469	+	RNA	SNP	C	T	T	rs145300831	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:55714469C>T	uc010kzj.2	+	1		c.1158C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						CAGTTCACTGCCATGTTCTAC	0.532													4	38					0	0	1	0	0
FKBP9L	360132	broad.mit.edu	37	7	55750512	55750512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:55750512C>T	uc010kzl.2	-	6	692	c.592G>A	c.(592-594)GAG>AAG	p.E198K	FKBP9L_uc010kzk.2_Missense_Mutation_p.E87K|FKBP9L_uc003tqt.2_Missense_Mutation_p.E87K|FKBP9L_uc011kcs.1_Missense_Mutation_p.E87K	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						TGAATGTACTCTGAGAACTGG	0.542													31	22					0	0	1	0	0
ZNF713	349075	broad.mit.edu	37	7	56007289	56007289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:56007289C>T	uc003trc.1	+	4	921	c.883C>T	c.(883-885)CAC>TAC	p.H295Y	ZNF713_uc003tra.1_Missense_Mutation_p.H308Y|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	295	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TCAGAGAATTCACACAGGAGA	0.428													84	39					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57187747	57187747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:57187747G>A	uc010kzo.2	-	5	1646	c.1375C>T	c.(1375-1377)CAT>TAT	p.H459Y		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	459	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TCTCCAGTATGAATTCTCTTG	0.428													14	104					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529426	57529426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:57529426C>T	uc011kdi.1	+	4	1371	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TTTAACTGCTCCTCAACCCTT	0.388													9	13					0	0	1	0	0
LOC168474	168474	broad.mit.edu	37	7	64312895	64312895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:64312895C>T	uc003ttj.1	-	1	1284	c.732G>A	c.(730-732)TGG>TGA	p.W244*		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TCCCAATAATCCATGCTTGGT	0.478													204	180					0	0	1	0	0
ZNF273	10793	broad.mit.edu	37	7	64388279	64388279	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:64388279A>G	uc003tto.2	+	4	649	c.573A>G	c.(571-573)TCA>TCG	p.S191S	ZNF273_uc003ttl.2_Silent_p.S126S|ZNF273_uc003ttn.2_Silent_p.S126S	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				ATAAATTCTCAAATTCAAATA	0.303													32	35					0	0	1	0	0
RABGEF1	27342	broad.mit.edu	37	7	66240227	66240227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:66240227G>A	uc011kee.1	+	3	399	c.235G>A	c.(235-237)GAA>AAA	p.E79K	RABGEF1_uc003tvf.2_5'UTR|RABGEF1_uc003tvg.2_5'UTR|RABGEF1_uc010lag.2_Missense_Mutation_p.E65K|RABGEF1_uc003tvh.2_Missense_Mutation_p.E65K|RABGEF1_uc003tvi.2_5'UTR	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	243	Interaction with ubiquitinated proteins.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						CCAGCGGGAGGAAGAAGAGGC	0.468													31	25					0	0	1	0	0
LOC729156	729156	broad.mit.edu	37	7	66296199	66296199	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:66296199C>T	uc003tvj.1	-	7		c.668G>A				NR_003934				Homo sapiens cDNA FLJ36054 fis, clone TESTI2018290.												0						GCATCTCCATCCCACAATCAG	0.567													13	50					0	0	1	0	0
C7orf42	55069	broad.mit.edu	37	7	66418263	66418263	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:66418263C>T	uc003tvk.2	+	6	1095	c.831C>T	c.(829-831)CTC>CTT	p.L277L	C7orf42_uc010lah.2_RNA|C7orf42_uc003tvl.2_Silent_p.L277L	NM_017994	NP_060464	Q9NWD8	CG042_HUMAN	hypothetical protein LOC55069	277	Helical; (Potential).					integral to membrane				ovary(1)	1						GTTACTTCCTCTTTGTGATGG	0.398													85	88					0	0	1	0	0
TYW1	55253	broad.mit.edu	37	7	66660289	66660289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:66660289G>A	uc003tvn.2	+	15	2091	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	TYW1_uc010lai.2_RNA|TYW1_uc011kef.1_Missense_Mutation_p.E262K|PMS2L4_uc003tvo.2_Intron	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	648					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				ATGTGAACACGAACACTCTAA	0.473													46	17					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70231204	70231204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:70231204C>T	uc003tvw.3	+	9	2316	c.1573C>T	c.(1573-1575)CAT>TAT	p.H525Y	AUTS2_uc003tvx.3_Missense_Mutation_p.H525Y|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	525	His-rich.									ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GACCGAGTTCCATcagcacca	0.473													10	64					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036349	71036349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:71036349G>A	uc003tvy.2	+	6	1042	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	WBSCR17_uc003tvz.2_Missense_Mutation_p.D47N	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	348	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TCCTGGCATGGATGTATACGG	0.507													24	104					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71175907	71175907	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:71175907C>T	uc003tvy.2	+	10	1662	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	WBSCR17_uc003tvz.2_Silent_p.F253F	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	554	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCTGGAACTTCATCCAGGTGA	0.607													9	34					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72337086	72337086	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:72337086G>A	uc010lal.1	-	1		c.2570C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						ATTGTGGAGAGGGGGAATGAG	0.527													10	63					0	0	1	0	0
TRIM50	135892	broad.mit.edu	37	7	72727133	72727133	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:72727133G>A	uc010lbd.1	-	7	1373	c.1248C>T	c.(1246-1248)CTC>CTT	p.L416L	FKBP6_uc003twz.2_Intron|TRIM50_uc003txy.1_Silent_p.L416L|TRIM50_uc003txz.1_Silent_p.L415L	NM_178125	NP_835226	Q86XT4	TRI50_HUMAN	tripartite motif protein 50A	416	B30.2/SPRY.					cytoplasm|intracellular membrane-bounded organelle	ligase activity|zinc ion binding			skin(1)	1						AGTGCAGGTAGAGCCCGATGC	0.682													10	6					0	0	1	0	0
CLDN4	1364	broad.mit.edu	37	7	73245952	73245952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:73245952C>T	uc003tzi.3	+	1	760	c.421C>T	c.(421-423)CAC>TAC	p.H141Y	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	141	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				CTGGACGGCCCACAACATCAT	0.637													35	24					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73458247	73458247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:73458247C>T	uc003tzw.2	+	9	557	c.466C>T	c.(466-468)CCA>TCA	p.P156S	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_Intron|ELN_uc011kfe.1_Missense_Mutation_p.P125S|ELN_uc003tzn.2_Missense_Mutation_p.P156S|ELN_uc003tzz.2_Missense_Mutation_p.P144S|ELN_uc003tzo.2_Missense_Mutation_p.P156S|ELN_uc003tzp.2_Missense_Mutation_p.P146S|ELN_uc003tzq.2_Intron|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.P156S|ELN_uc003tzt.2_Missense_Mutation_p.P161S|ELN_uc003tzu.2_Missense_Mutation_p.P161S|ELN_uc003tzv.2_Missense_Mutation_p.P146S|ELN_uc003tzx.2_Missense_Mutation_p.P146S|ELN_uc011kff.1_Missense_Mutation_p.P156S|ELN_uc003tzy.2_Missense_Mutation_p.P151S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	156					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TGGCGTGCTCCCAGGTGAGAG	0.438			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						18	24					0	0	1	0	0
EIF4H	7458	broad.mit.edu	37	7	73609501	73609501	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:73609501G>C	uc003uad.1	+	7	618	c.610G>C	c.(610-612)GAA>CAA	p.E204Q	RFC2_uc011kfa.1_Intron|EIF4H_uc010lbm.2_Intron|EIF4H_uc003uae.1_Missense_Mutation_p.E184Q|EIF4H_uc003uaf.1_RNA	NM_022170	NP_071496	Q15056	IF4H_HUMAN	eukaryotic translation initiation factor 4H	204					interspecies interaction between organisms|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0						TCCCCCAGAGGAAAGAGCACA	0.522													10	64					0	0	1	0	0
GTF2I	2969	broad.mit.edu	37	7	74103493	74103493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:74103493G>A	uc003uau.2	+	2	401	c.31G>A	c.(31-33)GTT>ATT	p.V11I	GTF2I_uc003uat.2_Missense_Mutation_p.V11I|GTF2I_uc003uav.2_Missense_Mutation_p.V11I|GTF2I_uc003uaw.2_Missense_Mutation_p.V11I|GTF2I_uc003uay.2_Missense_Mutation_p.V11I|GTF2I_uc003uax.2_Missense_Mutation_p.V11I	NM_032999	NP_127492	P78347	GTF2I_HUMAN	general transcription factor IIi isoform 1	11					negative regulation of angiogenesis|signal transduction|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						CACCCTCCCCGTTGAAGATGA	0.517													38	72					0	0	1	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74212452	74212452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:74212452G>A	uc003ubd.1	-	16	1583	c.1399C>T	c.(1399-1401)CAA>TAA	p.Q467*	GTF2IRD2_uc010lbt.1_Nonsense_Mutation_p.Q14*	NM_173537	NP_775808	Q86UP8	GTD2A_HUMAN	GTF2I repeat domain containing 2	467					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						tgattggtttgatagtggcgt	0													39	161					0	0	1	0	0
DTX2	113878	broad.mit.edu	37	7	76109952	76109952	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:76109952C>T	uc003uff.3	+	4	682	c.126C>T	c.(124-126)ATC>ATT	p.I42I	DTX2_uc011kgk.1_Intron|DTX2_uc003ufg.3_Silent_p.I42I|DTX2_uc003ufh.3_Silent_p.I42I|DTX2_uc003ufj.3_Silent_p.I42I	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	42	WWE 1.				Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GCAGCTTCATCGAGCAGCAGT	0.657													15	33					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77885818	77885818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:77885818G>A	uc003ugx.2	-	10	1743	c.1489C>T	c.(1489-1491)CCT>TCT	p.P497S	MAGI2_uc003ugy.2_Missense_Mutation_p.P497S|MAGI2_uc010ldx.1_Missense_Mutation_p.P106S|MAGI2_uc010ldy.1_Missense_Mutation_p.P106S|MAGI2_uc011kgr.1_Missense_Mutation_p.P329S|MAGI2_uc011kgs.1_Missense_Mutation_p.P334S	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	497	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGACCAATAGGAACAGACTGG	0.433													23	16					0	0	1	0	0
CD36	948	broad.mit.edu	37	7	80303448	80303448	+	Silent	SNP	G	A	A	rs141626483	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:80303448G>A	uc003uhc.2	+	17	2088	c.1404G>A	c.(1402-1404)TCG>TCA	p.S468S	CD36_uc003uhd.3_Silent_p.S468S|CD36_uc011kgv.1_Silent_p.S392S|CD36_uc003uhe.3_Silent_p.S468S|CD36_uc003uhf.3_Silent_p.S468S|CD36_uc003uhg.3_Silent_p.S468S|CD36_uc003uhh.3_Silent_p.S468S	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	468	Cytoplasmic (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						CATGCAGATCGAAAACAATAA	0.294													11	14					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82390765	82390765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82390765C>T	uc003uhx.2	-	23	15341	c.15052G>A	c.(15052-15054)GAA>AAA	p.E5018K		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4941	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTCTTCATTTCCTTCTTCAAT	0.313													18	10					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82451976	82451976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82451976G>A	uc003uhx.2	-	20	14915	c.14626C>T	c.(14626-14628)CAT>TAT	p.H4876Y	PCLO_uc003uhv.2_Missense_Mutation_p.H4876Y|PCLO_uc003uht.1_Missense_Mutation_p.H318Y|PCLO_uc003uhu.1_Missense_Mutation_p.H297Y	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4738	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGACTACTATGGGATTTCTCA	0.458													142	138					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82475918	82475918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82475918G>A	uc003uhx.2	-	12	14085	c.13796C>T	c.(13795-13797)TCC>TTC	p.S4599F	PCLO_uc003uhv.2_Missense_Mutation_p.S4599F|PCLO_uc003uht.1_Missense_Mutation_p.S50F|PCLO_uc003uhu.1_Missense_Mutation_p.S29F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4487					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGATGCTGGGAATTTTCAGA	0.338													17	34					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82532040	82532040	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82532040C>T	uc003uhx.2	-	9	13744	c.13455G>A	c.(13453-13455)GGG>GGA	p.G4485G	PCLO_uc003uhv.2_Silent_p.G4485G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4416					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCATAGTTTTCCCGTTCATCT	0.313													14	47					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544027	82544027	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82544027G>A	uc003uhx.2	-	7	13564	c.13275C>T	c.(13273-13275)TTC>TTT	p.F4425F	PCLO_uc003uhv.2_Silent_p.F4425F|PCLO_uc010lec.2_Silent_p.F1390F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4356					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGCATGTTGGAAGTCATCCA	0.433													4	23					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544603	82544603	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82544603C>T	uc003uhx.2	-	7	12988	c.12699G>A	c.(12697-12699)AGG>AGA	p.R4233R	PCLO_uc003uhv.2_Silent_p.R4233R|PCLO_uc010lec.2_Silent_p.R1198R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4164					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGAGCCTTGCCCTGGAGGAAA	0.398													30	12					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82581333	82581333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82581333G>A	uc003uhx.2	-	5	9225	c.8936C>T	c.(8935-8937)TCA>TTA	p.S2979L	PCLO_uc003uhv.2_Missense_Mutation_p.S2979L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2910					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATATGGCCCTGATCGATCATA	0.428													34	183					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583296	82583296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82583296C>T	uc003uhx.2	-	5	7262	c.6973G>A	c.(6973-6975)GAG>AAG	p.E2325K	PCLO_uc003uhv.2_Missense_Mutation_p.E2325K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2256					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCCTCCAACTCCTTTTTATCT	0.418													29	176					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82595107	82595107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82595107C>T	uc003uhx.2	-	4	4286	c.3997G>A	c.(3997-3999)GAA>AAA	p.E1333K	PCLO_uc003uhv.2_Missense_Mutation_p.E1333K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCCCAGGTTCCACCTGATCA	0.363													61	46					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764026	82764026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82764026G>A	uc003uhx.2	-	3	3129	c.2840C>T	c.(2839-2841)TCC>TTC	p.S947F	PCLO_uc003uhv.2_Missense_Mutation_p.S947F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	893	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCCTGCAGTGGAAATTAAATT	0.532													3	28					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764181	82764181	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82764181G>A	uc003uhx.2	-	3	2974	c.2685C>T	c.(2683-2685)TCC>TCT	p.S895S	PCLO_uc003uhv.2_Silent_p.S895S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	841	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGGCTTTGGGGACTGTTGAG	0.547													191	154					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784273	82784273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82784273C>T	uc003uhx.2	-	2	1973	c.1684G>A	c.(1684-1686)GGA>AGA	p.G562R	PCLO_uc003uhv.2_Missense_Mutation_p.G562R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	508	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCCAGATCCTGTTTGGCTT	0.522													252	224					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82785355	82785355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:82785355C>T	uc003uhx.2	-	2	891	c.602G>A	c.(601-603)GGA>GAA	p.G201E	PCLO_uc003uhv.2_Missense_Mutation_p.G201E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	201	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCAGGTTTTCCTTGCTCCTT	0.448													22	24					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	83037700	83037700	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:83037700A>G	uc003uhy.1	-	6	1120	c.654T>C	c.(652-654)GAT>GAC	p.D218D		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	218	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				ACAGACGCTCATCGTCATGCT	0.443													29	27					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86394513	86394513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86394513G>A	uc003uid.2	+	2	1151	c.52G>A	c.(52-54)GGA>AGA	p.G18R	GRM3_uc010lef.2_Missense_Mutation_p.G16R|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	18					synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GTTTTCAAAGGGATTTTTACT	0.398													78	64					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415805	86415805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86415805G>A	uc003uid.2	+	3	1796	c.697G>A	c.(697-699)GAA>AAA	p.E233K	GRM3_uc010lef.2_Missense_Mutation_p.E231K|GRM3_uc010leg.2_Missense_Mutation_p.E105K|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	233	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CTTCGAGCAGGAAGCCCGCCT	0.592													20	58					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415921	86415921	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86415921C>T	uc003uid.2	+	3	1912	c.813C>T	c.(811-813)GTC>GTT	p.V271V	GRM3_uc010lef.2_Silent_p.V269V|GRM3_uc010leg.2_Silent_p.V143V|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	271	Extracellular (Potential).				synaptic transmission	integral to plasma membrane		p.V271I(1)		lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ACGCGCGCGTCGTGGTCCTCT	0.657													73	25					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468403	86468403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86468403G>A	uc003uid.2	+	4	2672	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.D397N|GRM3_uc010leh.2_Missense_Mutation_p.D117N	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	525	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCAACCAGGGGATGTCTGCTG	0.537													39	124					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468442	86468442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86468442G>A	uc003uid.2	+	4	2711	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.E410K|GRM3_uc010leh.2_Missense_Mutation_p.E130K	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	538	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGAACCCTACGAATACCTGGC	0.532													102	102					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468681	86468681	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86468681C>T	uc003uid.2	+	4	2950	c.1851C>T	c.(1849-1851)ATC>ATT	p.I617I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.I489I|GRM3_uc010leh.2_Silent_p.I209I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	617	Helical; Name=2; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCTGCTACATCTTATTGTTTG	0.483													29	125					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86469047	86469047	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86469047C>T	uc003uid.2	+	4	3316	c.2217C>T	c.(2215-2217)ATC>ATT	p.I739I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.I611I|GRM3_uc010leh.2_Silent_p.I331I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	739	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GCATGTTGATCTCTCTTACCT	0.478													25	39					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86479781	86479781	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:86479781A>G	uc003uid.2	+	5	3586	c.2487A>G	c.(2485-2487)CAA>CAG	p.Q829Q	GRM3_uc010lef.2_Missense_Mutation_p.T472A|GRM3_uc010leg.2_Silent_p.Q701Q|GRM3_uc010leh.2_Silent_p.Q421Q	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	829	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCTGTTTCAACCCCAGAAGA	0.493													43	42					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87038587	87038587	+	Silent	SNP	G	A	A	rs149043617		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87038587G>A	uc003uiv.1	-	24	3122	c.3046C>T	c.(3046-3048)CTG>TTG	p.L1016L	ABCB4_uc003uiw.1_Silent_p.L1016L|ABCB4_uc003uix.1_Silent_p.L969L	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1016	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity	p.L1016L(1)		ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTGTCAATCAGAGGTTGTCTT	0.458													27	88					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87170679	87170679	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87170679G>A	uc003uiz.1	-	19	2731	c.2313C>T	c.(2311-2313)TTC>TTT	p.F771F	ABCB1_uc011khc.1_Silent_p.F707F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	771	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTACCTGAAGGAAAAATGTAA	0.299													31	25					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87173569	87173569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87173569G>A	uc003uiz.1	-	18	2505	c.2087C>T	c.(2086-2088)TCC>TTC	p.S696F	ABCB1_uc011khc.1_Missense_Mutation_p.S632F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	696	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTCCAAAAGGAAACTGGAGG	0.328													34	48					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87196275	87196275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87196275C>T	uc003uiz.1	-	7	774	c.356G>A	c.(355-357)AGT>AAT	p.S119N	ABCB1_uc011khc.1_Intron	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	119	ABC transmembrane type-1 1.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	ACCAATTCCACTGTAATAATA	0.393													22	32					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87763712	87763712	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87763712A>G	uc003ujn.2	+	13	1225	c.1146A>G	c.(1144-1146)TCA>TCG	p.S382S	ADAM22_uc003ujk.1_Silent_p.S382S|ADAM22_uc003ujl.1_Silent_p.S382S|ADAM22_uc003ujm.2_Silent_p.S382S|ADAM22_uc003ujo.2_Silent_p.S382S|ADAM22_uc003ujp.1_Silent_p.S434S	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	382	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GTATTATCTCAGACAAAAGAA	0.284													16	38					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87778365	87778365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87778365C>T	uc003ujn.2	+	18	1638	c.1559C>T	c.(1558-1560)TCA>TTA	p.S520L	ADAM22_uc003ujk.1_Missense_Mutation_p.S520L|ADAM22_uc003ujl.1_Missense_Mutation_p.S520L|ADAM22_uc003ujm.2_Missense_Mutation_p.S520L|ADAM22_uc003ujo.2_Missense_Mutation_p.S520L|ADAM22_uc003ujp.1_Missense_Mutation_p.S572L	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	520	Disintegrin.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TCAGGAAATTCAAGCCAGGTA	0.383													3	23					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87912231	87912231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:87912231G>A	uc003ujs.2	-	3	814	c.709C>T	c.(709-711)CGT>TGT	p.R237C	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R237C	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	237					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATAGCCATACGAAATGTATTA	0.363													12	58					0	0	1	0	0
MGC26647	219557	broad.mit.edu	37	7	88424122	88424122	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:88424122G>A	uc003ujv.2	-	2	317	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	45											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TATCAAGAAGGAATTTCTTTA	0.388													49	67					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965891	88965891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:88965891C>T	uc011khi.1	+	4	4133	c.3595C>T	c.(3595-3597)CCA>TCA	p.P1199S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1199						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ACAGACAGTTCCAGTTCACCA	0.507										HNSCC(36;0.09)			89	50					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91659268	91659268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:91659268G>A	uc003ulg.2	+	15	4433	c.4208G>A	c.(4207-4209)GGA>GAA	p.G1403E	AKAP9_uc003ule.2_Missense_Mutation_p.G1415E|AKAP9_uc003ulf.2_Missense_Mutation_p.G1403E|AKAP9_uc003uli.2_Missense_Mutation_p.G1028E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1415					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ATGTACCCTGGAAGTTGTGTG	0.269			T	BRAF	papillary thyroid								24	50					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92733260	92733260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92733260C>T	uc003umf.2	-	3	2407	c.2151G>A	c.(2149-2151)ATG>ATA	p.M717I	SAMD9_uc003umg.2_Missense_Mutation_p.M717I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	717						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AGTTTTGAATCATTGCTTCAA	0.388													34	156					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761009	92761009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92761009G>A	uc003umh.1	-	5	5492	c.4276C>T	c.(4276-4278)CCT>TCT	p.P1426S	SAMD9L_uc003umj.1_Missense_Mutation_p.P1426S|SAMD9L_uc003umi.1_Missense_Mutation_p.P1426S|SAMD9L_uc010lfb.1_Missense_Mutation_p.P1426S|SAMD9L_uc003umk.1_Missense_Mutation_p.P1426S|SAMD9L_uc010lfc.1_Missense_Mutation_p.P1426S|SAMD9L_uc010lfd.1_Missense_Mutation_p.P1426S|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1426										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AAGAAATAAGGACCTGGATAT	0.388													67	91					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761627	92761627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92761627C>T	uc003umh.1	-	5	4874	c.3658G>A	c.(3658-3660)GAA>AAA	p.E1220K	SAMD9L_uc003umj.1_Missense_Mutation_p.E1220K|SAMD9L_uc003umi.1_Missense_Mutation_p.E1220K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E1220K|SAMD9L_uc003umk.1_Missense_Mutation_p.E1220K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E1220K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E1220K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1220										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AATTCATTTTCTTTGTGGAAA	0.368													16	74					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764286	92764286	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92764286C>T	uc003umh.1	-	5	2215	c.999G>A	c.(997-999)TGG>TGA	p.W333*	SAMD9L_uc003umj.1_Nonsense_Mutation_p.W333*|SAMD9L_uc003umi.1_Nonsense_Mutation_p.W333*|SAMD9L_uc010lfb.1_Nonsense_Mutation_p.W333*|SAMD9L_uc003umk.1_Nonsense_Mutation_p.W333*|SAMD9L_uc010lfc.1_Nonsense_Mutation_p.W333*|SAMD9L_uc010lfd.1_Nonsense_Mutation_p.W333*|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	333										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GGTTTTGTTTCCATATTTTAT	0.343													17	90					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764701	92764701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92764701G>A	uc003umh.1	-	5	1800	c.584C>T	c.(583-585)CCA>CTA	p.P195L	SAMD9L_uc003umj.1_Missense_Mutation_p.P195L|SAMD9L_uc003umi.1_Missense_Mutation_p.P195L|SAMD9L_uc010lfb.1_Missense_Mutation_p.P195L|SAMD9L_uc003umk.1_Missense_Mutation_p.P195L|SAMD9L_uc010lfc.1_Missense_Mutation_p.P195L|SAMD9L_uc010lfd.1_Missense_Mutation_p.P195L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	195										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTCATGTATTGGATCAATGAG	0.403													70	58					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764729	92764729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:92764729C>T	uc003umh.1	-	5	1772	c.556G>A	c.(556-558)GAA>AAA	p.E186K	SAMD9L_uc003umj.1_Missense_Mutation_p.E186K|SAMD9L_uc003umi.1_Missense_Mutation_p.E186K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E186K|SAMD9L_uc003umk.1_Missense_Mutation_p.E186K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E186K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E186K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	186										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GCTCCTGTTTCAGGTTGTAGA	0.393													28	90					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93106958	93106958	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:93106958C>T	uc003umv.1	-	5	543	c.282G>A	c.(280-282)TGG>TGA	p.W94*	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Nonsense_Mutation_p.W76*|CALCR_uc003umw.2_Nonsense_Mutation_p.W76*	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	76	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GCCATCCATCCCAGGTGCGAT	0.428													14	24					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94049944	94049944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:94049944G>A	uc003ung.1	+	37	2750	c.2279G>A	c.(2278-2280)GGA>GAA	p.G760E	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	760			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGCCCCGTTGGAGCTGCTGGC	0.512										HNSCC(75;0.22)			8	5					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539710	94539710	+	Silent	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:94539710T>A	uc003unp.2	+	2	567	c.285T>A	c.(283-285)TCT>TCA	p.S95S	PPP1R9A_uc010lfj.2_Silent_p.S95S|PPP1R9A_uc011kif.1_Silent_p.S95S|PPP1R9A_uc003unq.2_Silent_p.S95S|PPP1R9A_uc011kig.1_Silent_p.S95S	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	95	Actin-binding.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GACATTCATCTCCTCAGAGAA	0.398										HNSCC(28;0.073)			8	60					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94879554	94879554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:94879554G>A	uc003unp.2	+	9	2599	c.2317G>A	c.(2317-2319)GAT>AAT	p.D773N	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D795N|PPP1R9A_uc011kif.1_Missense_Mutation_p.D773N|PPP1R9A_uc003unq.2_Missense_Mutation_p.D773N|PPP1R9A_uc011kig.1_Missense_Mutation_p.D773N	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	773	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GTTGATCAAGGATTTTCAACA	0.348										HNSCC(28;0.073)			27	22					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94897975	94897975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:94897975G>A	uc003unp.2	+	12	2995	c.2713G>A	c.(2713-2715)GAT>AAT	p.D905N	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D927N|PPP1R9A_uc011kif.1_Missense_Mutation_p.D905N|PPP1R9A_uc003unq.2_Missense_Mutation_p.D905N|PPP1R9A_uc011kig.1_Missense_Mutation_p.D905N|PPP1R9A_uc003unr.2_5'UTR	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	905	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGACTGTATGATAGTGTTAG	0.483										HNSCC(28;0.073)			35	51					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98547196	98547196	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:98547196G>T	uc003upp.2	+	35	5133	c.4924G>T	c.(4924-4926)GCC>TCC	p.A1642S	TRRAP_uc011kis.1_Missense_Mutation_p.A1624S|TRRAP_uc003upr.2_Missense_Mutation_p.A1341S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1642					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCAGTTCCAGGCCATCAAGGT	0.592													5	49					0.00116845	0.00116997	1	1	0
TRRAP	8295	broad.mit.edu	37	7	98551047	98551047	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:98551047C>T	uc003upp.2	+	39	5909	c.5700C>T	c.(5698-5700)ATC>ATT	p.I1900I	TRRAP_uc011kis.1_Silent_p.I1882I|TRRAP_uc003upr.2_Silent_p.I1599I	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1900					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACAAGAAGATCGTCCTGCAGG	0.577													28	21					0	0	1	0	0
CYP3A43	64816	broad.mit.edu	37	7	99445221	99445221	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:99445221G>A	uc003urx.1	+	5	532	c.429G>A	c.(427-429)AAG>AAA	p.K143K	CYP3A43_uc003ury.1_Silent_p.K143K|CYP3A43_uc003urz.1_Silent_p.K143K|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_5'UTR	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	143			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TAAAATTCAAGGAAGTAAGAA	0.353													51	65					0	0	1	0	0
OR2AE1	81392	broad.mit.edu	37	7	99473783	99473784	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:99473783_99473784GG>AA	uc003usc.1	-	1	873_874	c.873_874CC>TT	c.(871-876)CTCCGG>CTTTGG	p.R292W		NM_001005276	NP_001005276	Q8NHA4	O2AE1_HUMAN	olfactory receptor, family 2, subfamily AE,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TCTTTATTCCGGAGAGTATAAA	0.46													60	52					0	0	1	0	0
TRIM4	89122	broad.mit.edu	37	7	99490094	99490094	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:99490094C>G	uc003usd.2	-	7	1325	c.1195G>C	c.(1195-1197)GAG>CAG	p.E399Q	TRIM4_uc003use.2_Missense_Mutation_p.E373Q|TRIM4_uc011kjc.1_Missense_Mutation_p.E229Q	NM_033017	NP_148977	Q9C037	TRIM4_HUMAN	tripartite motif protein TRIM4 isoform alpha	399	B30.2/SPRY.				protein trimerization	cytoplasm|plasma membrane	zinc ion binding			ovary(1)|kidney(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)	Ovarian(593;0.238)				ATGACGTCCTCCCGACACACC	0.488													79	154					0	0	1	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654906	99654906	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:99654906T>G	uc003uso.2	+	2	421	c.277T>G	c.(277-279)TTC>GTC	p.F93V	ZSCAN21_uc011kje.1_Missense_Mutation_p.F92V|ZSCAN21_uc003usn.1_Missense_Mutation_p.F92V	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	93	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GCTGGAGCAGTTCCTGACCAT	0.637													9	37					0	0	1	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100001806	100001806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100001806C>T	uc003uut.2	-	14	1561	c.1313G>A	c.(1312-1314)AGA>AAA	p.R438K	ZCWPW1_uc011kjq.1_Missense_Mutation_p.R318K|ZCWPW1_uc003uur.2_Missense_Mutation_p.R318K|ZCWPW1_uc003uus.2_Missense_Mutation_p.R318K|ZCWPW1_uc011kjr.1_Missense_Mutation_p.R438K|ZCWPW1_uc003uuu.1_Missense_Mutation_p.R439K|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	438							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCTACCTTTTCTTTCCCCATT	0.428													8	29					0	0	1	0	0
AGFG2	3268	broad.mit.edu	37	7	100159976	100159976	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100159976G>A	uc003uvf.2	+	7	1108	c.972G>A	c.(970-972)GGG>GGA	p.G324G	AGFG2_uc010lgy.2_Missense_Mutation_p.G186E	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	324					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						TGGGACCCGGGGTGCCCGCTG	0.672													41	36					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100187615	100187615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100187615C>T	uc003uvm.1	+	2	348	c.55C>T	c.(55-57)CCT>TCT	p.P19S	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.P19S|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.P57S|FBXO24_uc011kka.1_Missense_Mutation_p.P7S	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	19						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAGAAGCTGCCCTTCTTGTGG	0.562													55	44					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100187894	100187894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100187894G>A	uc003uvm.1	+	3	529	c.236G>A	c.(235-237)TGG>TAG	p.W79*	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Nonsense_Mutation_p.W79*|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Nonsense_Mutation_p.W117*|FBXO24_uc011kka.1_Nonsense_Mutation_p.W67*	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	79	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAAGGCGTGTGGAGACGCATC	0.587													9	49					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349491	100349491	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100349491A>C	uc003uwj.2	+	14	1928	c.1763A>C	c.(1762-1764)AAA>ACA	p.K588T	ZAN_uc003uwk.2_Missense_Mutation_p.K588T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	588	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACAGTCCCCAAAGAAAAGCCC	0.468													21	29					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681099	100681099	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100681099C>T	uc003uxp.1	+	3	6455	c.6402C>T	c.(6400-6402)ATC>ATT	p.I2134I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2134	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCCTGTGATCACTTCTACTG	0.473													131	209					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100683380	100683380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100683380G>A	uc003uxp.1	+	3	8736	c.8683G>A	c.(8683-8685)GAT>AAT	p.D2895N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2895	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|46.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTGTTGATACCAGCAT	0.478													218	163					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100696408	100696408	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:100696408C>T	uc003uxp.1	+	10	13298	c.13245C>T	c.(13243-13245)CGC>CGT	p.R4415R	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4415	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCGTTTTCCGCTCCAAGAGAG	0.577													12	30					0	0	1	0	0
EMID2	136227	broad.mit.edu	37	7	101183236	101183236	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:101183236G>A	uc010lhy.1	+	5	696	c.504G>A	c.(502-504)GAG>GAA	p.E168E	EMID2_uc003uyo.1_Silent_p.E170E	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	170						collagen				ovary(1)	1	Lung NSC(181;0.215)					CAGCCCCCGAGAGCACTCCGC	0.652													10	35					0	0	1	0	0
MYL10	93408	broad.mit.edu	37	7	101267529	101267529	+	Missense_Mutation	SNP	G	C	C	rs146674429	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:101267529G>C	uc003uyr.2	-	2	272	c.94C>G	c.(94-96)CGG>GGG	p.R32G		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	32						mitochondrion	calcium ion binding	p.R32Q(1)		ovary(1)|breast(1)	2						GCTCTTTTCCGAGCTCTTCTC	0.617													24	56					0	0	1	0	0
SH2B2	10603	broad.mit.edu	37	7	101957705	101957705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:101957705C>T	uc011kko.1	+	5	1412	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	413					blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						CTGGAGCTATCCGACTACCCA	0.632													10	21					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103018150	103018150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103018150C>T	uc003vbz.2	-	18	2118	c.1882G>A	c.(1882-1884)GAA>AAA	p.E628K	SLC26A5_uc003vbt.1_Missense_Mutation_p.E628K|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.E596K|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	628	Cytoplasmic (Potential).|STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CTTTGCATTTCCTCAGGAAAT	0.423													61	38					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103136991	103136991	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103136991C>G	uc003vca.2	-	56	9335	c.9175G>C	c.(9175-9177)GTG>CTG	p.V3059L	RELN_uc010liz.2_Missense_Mutation_p.V3059L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3059					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AAAGTGTCCACCAATTGGCTG	0.388													12	66					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103138606	103138606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103138606G>A	uc003vca.2	-	54	8921	c.8761C>T	c.(8761-8763)CTT>TTT	p.L2921F	RELN_uc010liz.2_Missense_Mutation_p.L2921F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2921					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCCTCGGCAAGAATTCCACAC	0.433													14	74					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103141269	103141269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103141269C>T	uc003vca.2	-	53	8750	c.8590G>A	c.(8590-8592)GGA>AGA	p.G2864R	RELN_uc010liz.2_Missense_Mutation_p.G2864R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2864	EGF-like 7.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AAGCAATCTCCATGGCCCCTG	0.507													80	85					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103162527	103162527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103162527C>T	uc003vca.2	-	48	7770	c.7610G>A	c.(7609-7611)GGG>GAG	p.G2537E	RELN_uc010liz.2_Missense_Mutation_p.G2537E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2537					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACTCAATTTCCCTCCGTTCAC	0.517													48	38					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103230146	103230146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103230146C>T	uc003vca.2	-	28	4202	c.4042G>A	c.(4042-4044)GAA>AAA	p.E1348K	RELN_uc010liz.2_Missense_Mutation_p.E1348K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1348					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GAGTTTCCTTCGCATCCTTTG	0.473													24	97					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103251224	103251224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:103251224C>T	uc003vca.2	-	22	3086	c.2926G>A	c.(2926-2928)GAA>AAA	p.E976K	RELN_uc010liz.2_Missense_Mutation_p.E976K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	976					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GATGTAAATTCCTGACAACTT	0.423													19	68					0	0	1	0	0
CBLL1	79872	broad.mit.edu	37	7	107399489	107399489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:107399489G>A	uc003veq.2	+	6	1672	c.1342G>A	c.(1342-1344)GGA>AGA	p.G448R	CBLL1_uc011kme.1_Missense_Mutation_p.G327R|CBLL1_uc011kmf.1_Missense_Mutation_p.G447R	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	448	Pro-rich.				cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						ACAACCAGGGGGAATGAGTCC	0.532													36	47					0	0	1	0	0
LAMB1	3912	broad.mit.edu	37	7	107576049	107576049	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:107576049C>T	uc003vew.2	-	27	4334	c.3999G>A	c.(3997-3999)GAG>GAA	p.E1333E	LAMB1_uc003vev.2_Silent_p.E1357E	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1333	Domain II.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATTCACCCTCTCCTCTGCCT	0.498													22	97					0	0	1	0	0
NRCAM	4897	broad.mit.edu	37	7	107872917	107872917	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:107872917G>A	uc003vfb.2	-	7	751	c.280C>T	c.(280-282)CTG>TTG	p.L94L	NRCAM_uc003vfc.2_Silent_p.L88L|NRCAM_uc011kmk.1_Silent_p.L89L|NRCAM_uc003vfd.2_Silent_p.L89L|NRCAM_uc003vfe.2_Silent_p.L89L	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	94	Ig-like 1.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						ATGGTGACCAGAGGGTCTTTA	0.453													28	52					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115580660	115580660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:115580660G>A	uc003vhj.1	-	8	1173	c.989C>T	c.(988-990)TCC>TTC	p.S330F	TFEC_uc003vhk.1_Missense_Mutation_p.S301F|TFEC_uc003vhl.3_3'UTR|TFEC_uc011kmw.1_3'UTR	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	330	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			GCTTTCTTTGGAAACTGCAGG	0.408													46	33					0	0	1	0	0
TES	26136	broad.mit.edu	37	7	115889214	115889214	+	Missense_Mutation	SNP	C	T	T	rs78197118	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:115889214C>T	uc003vho.2	+	3	435	c.254C>T	c.(253-255)CCC>CTC	p.P85L	TES_uc011kmx.1_Missense_Mutation_p.P85L|TES_uc011kmy.1_Intron|TES_uc010lka.1_Missense_Mutation_p.P76L|TES_uc003vhp.2_Missense_Mutation_p.P76L	NM_015641	NP_056456	Q9UGI8	TES_HUMAN	testin isoform 1	85					negative regulation of cell proliferation	cytoplasm|focal adhesion|nucleus|protein complex	zinc ion binding				0	Lung NSC(10;0.0137)|all_lung(10;0.0148)	Breast(660;0.0602)	STAD - Stomach adenocarcinoma(10;0.00878)			GATGGAATTCCCATGTATAAA	0.413													18	48					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116414988	116414988	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:116414988C>T	uc003vij.2	+	15	3269	c.3082C>T	c.(3082-3084)CTG>TTG	p.L1028L	MET_uc010lkh.2_Silent_p.L1046L|MET_uc011knj.1_Silent_p.L598L	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1028	Cytoplasmic (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.L982_D1028del(3)|p.D981_D1028del(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GCAGTATCCTCTGACAGACAT	0.408			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				37	44					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117199657	117199657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:117199657C>T	uc003vjd.2	+	11	1664	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	CFTR_uc011knq.1_5'UTR|CFTR_uc003vje.1_RNA	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	511	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTTGGTGTTTCCTATGATGAA	0.358									Cystic_Fibrosis				22	37					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	119915115	119915115	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:119915115G>A	uc003vjj.1	+	1	1394	c.429G>A	c.(427-429)GAG>GAA	p.E143E		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	143	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GCAGGCGAGAGAACGCCGAGC	0.597													48	45					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120782129	120782129	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:120782129C>T	uc003vjq.3	+	16	2436	c.1989C>T	c.(1987-1989)ACC>ACT	p.T663T	C7orf58_uc003vjs.3_Silent_p.T663T|C7orf58_uc003vjt.3_Silent_p.T443T	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	663						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ACAAACTCACCATCTATAGAG	0.453													30	75					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120906827	120906827	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:120906827C>T	uc003vjq.3	+	20	3045	c.2598C>T	c.(2596-2598)TCC>TCT	p.S866S		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	866						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GGCTTAATTCCAATCACCTGC	0.368													17	53					0	0	1	0	0
WNT16	51384	broad.mit.edu	37	7	120979129	120979129	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:120979129A>T	uc003vjw.2	+	4	1085	c.828A>T	c.(826-828)AAA>AAT	p.K276N	WNT16_uc003vjv.2_Missense_Mutation_p.K266N|WNT16_uc010lkl.2_Missense_Mutation_p.K60N	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	276					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					ATCAGAGGAAAATACCAATCC	0.378													7	13					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121680940	121680940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:121680940G>A	uc003vjy.2	+	21	6103	c.5708G>A	c.(5707-5709)GGA>GAA	p.G1903E	PTPRZ1_uc003vjz.2_Missense_Mutation_p.G1036E|PTPRZ1_uc011knt.1_Missense_Mutation_p.G493E	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1903	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CCTGACATGGGAGTACCAGAG	0.547													19	33					0	0	1	0	0
CADPS2	93664	broad.mit.edu	37	7	122111485	122111485	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:122111485G>A	uc010lkp.2	-	13	2293	c.2130C>T	c.(2128-2130)GAC>GAT	p.D710D	CADPS2_uc011knx.1_Silent_p.D81D|CADPS2_uc003vkg.3_Silent_p.D407D|CADPS2_uc010lkq.2_Silent_p.D707D	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	710					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GCAGGGTAGGGTCAATGACAG	0.453													12	21					0	0	1	0	0
IQUB	154865	broad.mit.edu	37	7	123152385	123152385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:123152385G>A	uc003vkn.2	-	2	587	c.10C>T	c.(10-12)CAA>TAA	p.Q4*	IQUB_uc003vko.2_Nonsense_Mutation_p.Q4*|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Nonsense_Mutation_p.Q4*|IQUB_uc003vkq.2_Nonsense_Mutation_p.Q4*	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	4				Q -> R (in Ref. 1; BAC04074).						ovary(3)|large_intestine(1)	4						TTCTCCTGTTGATTAGACATT	0.328													5	25					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126542724	126542724	+	Missense_Mutation	SNP	C	T	T	rs13309334	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:126542724C>T	uc003vlr.2	-	5	1339	c.1028G>A	c.(1027-1029)CGA>CAA	p.R343Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R343Q|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.R64Q	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	343	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCTAAAGTATCGATCAAATCC	0.348										HNSCC(24;0.065)			11	20					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126882982	126882982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:126882982G>A	uc003vlr.2	-	1	588	c.277C>T	c.(277-279)CTT>TTT	p.L93F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.L93F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	93	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATGTTGGAAAGGAGATCAGGG	0.502										HNSCC(24;0.065)			9	27					0	0	1	0	0
FAM71F2	346653	broad.mit.edu	37	7	128317745	128317745	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:128317745C>T	uc003vnk.3	+	3	599	c.493C>T	c.(493-495)CAA>TAA	p.Q165*	FAM71F2_uc010llm.1_Nonsense_Mutation_p.Q156*|FAM71F2_uc003vnl.2_RNA|FAM71F2_uc010lln.1_RNA	NM_001012454	NP_001012457	Q6NXP2	F71F2_HUMAN	hypothetical protein LOC346653 isoform a	165											0						GATTGTGTTTCAATTCTGGGT	0.502													21	31					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128480142	128480142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:128480142G>A	uc003vnz.3	+	9	1686	c.1477G>A	c.(1477-1479)GAG>AAG	p.E493K	FLNC_uc003voa.3_Missense_Mutation_p.E493K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	493	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCGCGTGAAAGAGGTGGCTGA	0.642													70	92					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128493530	128493530	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:128493530G>A	uc003vnz.3	+	38	6425	c.6216G>A	c.(6214-6216)GGG>GGA	p.G2072G	FLNC_uc003voa.3_Silent_p.G2039G	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2072	Filamin 19.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAGGTTATGGGGGCTTGGGGC	0.582													9	30					0	0	1	0	0
IRF5	3663	broad.mit.edu	37	7	128585918	128585918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:128585918G>A	uc003vog.2	+	3	336	c.215G>A	c.(214-216)GGG>GAG	p.G72E	IRF5_uc010llr.1_Missense_Mutation_p.G72E|IRF5_uc011kot.1_Missense_Mutation_p.G72E|IRF5_uc011kou.1_Missense_Mutation_p.G72E|IRF5_uc010lls.1_Missense_Mutation_p.G72E|IRF5_uc003voh.2_Missense_Mutation_p.G72E|IRF5_uc010llt.2_Missense_Mutation_p.G72E|IRF5_uc003voi.2_Missense_Mutation_p.G72E|IRF5_uc010llu.1_Missense_Mutation_p.G72E|IRF5_uc003vok.2_Missense_Mutation_p.G72E|IRF5_uc003voj.3_Missense_Mutation_p.G72E|IRF5_uc010llv.1_Missense_Mutation_p.G72E|IRF5_uc010llw.1_Missense_Mutation_p.G72E	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	72	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AAGGAGACAGGGAAATACACC	0.602													12	24					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129093175	129093175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:129093175C>T	uc011koy.1	+	5	557	c.517C>T	c.(517-519)CAC>TAC	p.H173Y	FAM40B_uc003vow.2_Missense_Mutation_p.H173Y	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	173											0						GGAGCTACTCCACATGGAAAT	0.512													22	40					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131844238	131844238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:131844238C>T	uc003vra.3	-	25	4883	c.4654G>A	c.(4654-4656)GAT>AAT	p.D1552N		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1552	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCACCCAGATCCATATCTGCA	0.557													40	117					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131844299	131844299	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:131844299C>T	uc003vra.3	-	25	4822	c.4593G>A	c.(4591-4593)AAG>AAA	p.K1531K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1531	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CATCCAGAATCTTCTCCTTGA	0.552													87	130					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137255924	137255924	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:137255924A>G	uc003vtt.2	-	19	1945	c.1944T>C	c.(1942-1944)TCT>TCC	p.S648S	DGKI_uc003vtu.2_Silent_p.S348S	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	648					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						TGCTCACCAAAGAGGCCATGG	0.378													23	15					0	0	1	0	0
AKR1D1	6718	broad.mit.edu	37	7	137776624	137776624	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:137776624C>T	uc003vtz.2	+	3	441	c.372C>T	c.(370-372)GCC>GCT	p.A124A	AKR1D1_uc011kqb.1_Silent_p.A124A|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Silent_p.A124A|AKR1D1_uc011kqf.1_Silent_p.A124A|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	124					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TACCCATGGCCTTTAAGGTGA	0.507													20	100					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138447681	138447681	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138447681C>T	uc003vuf.2	-	5	619	c.381G>A	c.(379-381)CTG>CTA	p.L127L	ATP6V0A4_uc003vug.2_Silent_p.L127L|ATP6V0A4_uc003vuh.2_Silent_p.L127L	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	127	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GGAGGTATTTCAGTTCTGTCA	0.453													26	92					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138453967	138453967	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138453967C>T	uc003vuf.2	-	3	385	c.147G>A	c.(145-147)AGG>AGA	p.R49R	ATP6V0A4_uc003vug.2_Silent_p.R49R|ATP6V0A4_uc003vuh.2_Silent_p.R49R	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	49	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TCACAAATTTCCTTTGAAAGC	0.328													24	48					0	0	1	0	0
TMEM213	155006	broad.mit.edu	37	7	138487709	138487709	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138487709C>T	uc010lna.2	+	3	330	c.219C>T	c.(217-219)ATC>ATT	p.I73I	TMEM213_uc010lnb.2_Silent_p.I72I	NM_001085429	NP_001078898	A2RRL7	TM213_HUMAN	transmembrane protein 213	73	Helical; (Potential).					integral to membrane					0						ACGGCTGGATCGCGGCAGCTG	0.607													9	23					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545921	138545921	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138545921G>A	uc011kql.1	-	16	5260	c.5211C>T	c.(5209-5211)TTC>TTT	p.F1737F	KIAA1549_uc011kqi.1_Silent_p.F521F|KIAA1549_uc003vuk.3_Silent_p.F1687F|KIAA1549_uc011kqj.1_Silent_p.F1737F|KIAA1549_uc011kqk.1_Silent_p.F521F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1737						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTGGGCTGTAGAAGGACCCCC	0.612			O	BRAF	pilocytic astrocytoma								22	35					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138546119	138546119	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138546119G>A	uc011kql.1	-	16	5062	c.5013C>T	c.(5011-5013)TCC>TCT	p.S1671S	KIAA1549_uc011kqi.1_Silent_p.S455S|KIAA1549_uc003vuk.3_Silent_p.S1621S|KIAA1549_uc011kqj.1_Silent_p.S1671S|KIAA1549_uc011kqk.1_Silent_p.S455S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1671						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGATGTACTGGGAGGCCGGGA	0.642			O	BRAF	pilocytic astrocytoma								14	24					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138579238	138579238	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138579238G>A	uc011kql.1	-	10	3931	c.3882C>T	c.(3880-3882)TCC>TCT	p.S1294S	KIAA1549_uc011kqi.1_Silent_p.S78S|KIAA1549_uc003vuk.3_Silent_p.S1244S|KIAA1549_uc011kqj.1_Silent_p.S1294S|KIAA1549_uc011kqk.1_Silent_p.S78S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1294						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TGTTGCTCTGGGATTCCGGAG	0.502			O	BRAF	pilocytic astrocytoma								18	47					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601855	138601855	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:138601855G>A	uc011kql.1	-	2	2566	c.2517C>T	c.(2515-2517)ATC>ATT	p.I839I	KIAA1549_uc003vuk.3_Silent_p.I789I|KIAA1549_uc011kqj.1_Silent_p.I839I	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	839						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ACGCGTCAGTGATCAACACCG	0.562			O	BRAF	pilocytic astrocytoma								16	15					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140223218	140223218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:140223218C>T	uc010lnj.2	-	15	2699	c.2554G>A	c.(2554-2556)GAT>AAT	p.D852N	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.D852N|DENND2A_uc003vvw.2_Missense_Mutation_p.D852N	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	852										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					GAGTCCTCATCGTCCATCTGG	0.607													5	23					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140301675	140301675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:140301675C>T	uc010lnj.2	-	1	668	c.523G>A	c.(523-525)GCA>ACA	p.A175T	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.A175T|DENND2A_uc003vvw.2_Missense_Mutation_p.A175T|DENND2A_uc003vvx.2_Missense_Mutation_p.A175T	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	175										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TCCAGCCCTGCCGACCCATCC	0.597													25	31					0	0	1	0	0
WEE2	494551	broad.mit.edu	37	7	141429444	141429444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141429444G>A	uc003vwn.2	+	11	2055	c.1649G>A	c.(1648-1650)GGA>GAA	p.G550E	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	550					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CTGGTGGGAGGAAAGAGTGCA	0.428													19	40					0	0	1	0	0
TAS2R3	50831	broad.mit.edu	37	7	141463992	141463992	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141463992C>T	uc003vwp.1	+	1	96	c.34C>T	c.(34-36)CTG>TTG	p.L12L		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	12	Helical; Name=1; (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					GTTCCTGATTCTGTCTGGCAC	0.453													39	123					0	0	1	0	0
PRSS37	136242	broad.mit.edu	37	7	141537046	141537046	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141537046G>A	uc003vws.1	-	4	805	c.433C>T	c.(433-435)CGA>TGA	p.R145*	PRSS37_uc011krk.1_Nonsense_Mutation_p.R132*|PRSS37_uc011krl.1_Nonsense_Mutation_p.R144*|PRSS37_uc003vwt.1_Nonsense_Mutation_p.R132*	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	145	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						TCAGGGTGTCGGCCTGAGGGA	0.468													34	38					0	0	1	0	0
OR9A4	130075	broad.mit.edu	37	7	141618825	141618825	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141618825G>A	uc003vwu.1	+	1	150	c.150G>A	c.(148-150)GTG>GTA	p.V50V		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TTGTCTGTGTGGATAAACGTC	0.453													34	126					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672872	141672872	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141672872G>A	uc003vwx.1	-	1	702	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	206	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					GAAACAATAGGAAAGGAGGCA	0.438													14	34					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141727502	141727502	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141727502C>T	uc003vwy.2	+	10	1242	c.1188C>T	c.(1186-1188)GTC>GTT	p.V396V		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	396	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGAGGGAAGTCGTGGAGAGAA	0.458													17	9					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141730444	141730444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141730444C>T	uc003vwy.2	+	12	1411	c.1357C>T	c.(1357-1359)CCA>TCA	p.P453S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	453	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTTTTAGGATCCAGCCATCTC	0.463													27	43					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141736632	141736632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141736632C>T	uc003vwy.2	+	18	2140	c.2086C>T	c.(2086-2088)CCT>TCT	p.P696S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	696	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGACCAGGATCCTGCCTCCTT	0.498													36	140					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141750635	141750635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141750635C>T	uc003vwy.2	+	24	2830	c.2776C>T	c.(2776-2778)CCT>TCT	p.P926S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	926	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCAGACTTCTCCTACAGTCAC	0.398													30	64					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141752589	141752589	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141752589C>T	uc003vwy.2	+	26	3018	c.2964C>T	c.(2962-2964)TCC>TCT	p.S988S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	988	Lumenal (Potential).|P-type 2.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTCAGGCATCCAATTCTTCTG	0.403													57	43					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141758086	141758086	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141758086C>T	uc003vwy.2	+	31	3831	c.3777C>T	c.(3775-3777)ATC>ATT	p.I1259I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1259	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTCTGAGATCGCCAGCTTGT	0.498													102	147					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141796141	141796141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141796141G>A	uc003vwy.2	+	42	4984	c.4930G>A	c.(4930-4932)GAC>AAC	p.D1644N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1644	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTTTGTGTCAGACCAGGTGAC	0.577													17	11					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141799449	141799449	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141799449T>A	uc003vwy.2	+	44	5152	c.5098T>A	c.(5098-5100)TTG>ATG	p.L1700M		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1700	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTGGAAGACCTTGCCAGCCCC	0.527													41	31					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141952185	141952185	+	Silent	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141952185A>T	uc003vxb.2	-	5	902	c.582T>A	c.(580-582)GTT>GTA	p.V194V	TRYX3_uc003vxc.3_Silent_p.V194V	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	194	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GGGCAGCAGAAACTTCCTGCC	0.408													19	23					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141955432	141955432	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:141955432C>T	uc003vxb.2	-	2	422	c.102G>A	c.(100-102)TTG>TTA	p.L34L	TRYX3_uc003vxc.3_Silent_p.L34L	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	34	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGTCAGATTTCAAATAGACCA	0.468													24	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142000977	142000977	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142000977C>T	uc011kro.1	+	2	114	c.69C>T	c.(67-69)GTC>GTT	p.V23V						SubName: Full=V_segment translation product; Flags: Fragment;																		AACCTGAAGTCACCCAGACTC	0.418													15	19					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142458423	142458423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142458423G>A	uc003wak.2	+	2	75	c.58G>A	c.(58-60)GAT>AAT	p.D20N	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	20					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCCCTTTGATGATGATGACAA	0.527									Hereditary_Pancreatitis				47	171					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142479926	142479926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142479926G>A	uc011ksq.1	+	2	141	c.58G>A	c.(58-60)GAT>AAT	p.D20N	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CCCCTTTGATGATGATGACAA	0.547													24	35					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142564675	142564675	+	Silent	SNP	C	T	T	rs151016022	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142564675C>T	uc011kst.1	+	11	2386	c.1599C>T	c.(1597-1599)TCC>TCT	p.S533S	EPHB6_uc011ksu.1_Silent_p.S533S|EPHB6_uc003wbs.2_Silent_p.S241S|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_Silent_p.S241S|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	533	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					AAGACGAATCCCACTCCTTCA	0.652													22	42					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142572875	142572875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142572875C>T	uc003wbx.1	-	9	1381	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	TRPV6_uc003wbw.1_Missense_Mutation_p.E175K|TRPV6_uc010lou.1_Missense_Mutation_p.E260K	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	389	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GTCACCAGCTCCCCGACCAGC	0.562													35	57					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142649704	142649704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142649704C>T	uc003wcb.2	-	10	1305	c.1095G>A	c.(1093-1095)ATG>ATA	p.M365I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	365	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCCCTAAGATCATGTGGCTCT	0.527													13	32					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142750298	142750298	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142750298C>T	uc011ksv.1	+	1	861	c.861C>T	c.(859-861)ATC>ATT	p.I287I		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					ATCCCTTTATCCTTACCTTCT	0.522													20	26					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142880788	142880788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142880788G>A	uc011ksw.1	+	1	277	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	93	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					CATGATGTTAGAAATTACCAT	0.378													55	72					0	0	1	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881239	142881239	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142881239G>C	uc011ksw.1	+	1	728	c.728G>C	c.(727-729)GGA>GCA	p.G243A		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	243	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					CTACACATGGGAAGCAATGCC	0.493													44	53					0	0	1	0	0
TMEM139	135932	broad.mit.edu	37	7	142983263	142983263	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142983263G>A	uc010lov.2	+	3	352	c.213G>A	c.(211-213)CAG>CAA	p.Q71Q	CASP2_uc003wco.2_5'Flank|CASP2_uc003wcp.2_5'Flank|CASP2_uc011kta.1_5'Flank|TMEM139_uc003wck.3_Silent_p.Q71Q|TMEM139_uc003wcl.2_Silent_p.Q71Q|TMEM139_uc003wcm.2_Silent_p.Q71Q|TMEM139_uc003wcn.2_Intron	NM_153345	NP_699176	Q8IV31	TM139_HUMAN	transmembrane protein 139 precursor	71	Cytoplasmic (Potential).					integral to membrane					0	Melanoma(164;0.059)					AATCAATGCAGACTGAGAGCC	0.537													38	45					0	0	1	0	0
TMEM139	135932	broad.mit.edu	37	7	142983718	142983718	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:142983718C>T	uc010lov.2	+	4	586	c.447C>T	c.(445-447)TCC>TCT	p.S149S	CASP2_uc003wco.2_5'Flank|CASP2_uc003wcp.2_5'Flank|CASP2_uc011kta.1_5'Flank|CASP2_uc003wcq.2_5'Flank|TMEM139_uc003wck.3_Silent_p.S149S|TMEM139_uc003wcl.2_Silent_p.S149S|TMEM139_uc003wcm.2_Silent_p.S149S|TMEM139_uc003wcn.2_RNA	NM_153345	NP_699176	Q8IV31	TM139_HUMAN	transmembrane protein 139 precursor	149	Cytoplasmic (Potential).					integral to membrane					0	Melanoma(164;0.059)					CAGAGGGGTCCATGGCCCAGG	0.607													11	45					0	0	1	0	0
FAM131B	9715	broad.mit.edu	37	7	143054508	143054508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143054508C>T	uc003wct.2	-	5	2097	c.391G>A	c.(391-393)GAG>AAG	p.E131K	FAM131B_uc010loz.2_Missense_Mutation_p.E99K|FAM131B_uc003wcu.3_Missense_Mutation_p.E131K|FAM131B_uc010lpa.2_Missense_Mutation_p.E159K	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	131											0	Melanoma(164;0.205)					GCAAACTGCTCCATGACGCCT	0.483													24	49					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143096351	143096351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143096351C>T	uc003wcz.2	-	5	1078	c.991G>A	c.(991-993)GGT>AGT	p.G331S		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	331	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CTGGACTCACCTGTGCATGCC	0.612													18	45					0	0	1	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175198	143175198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143175198G>A	uc003wdc.1	+	1	233	c.233G>A	c.(232-234)GGG>GAG	p.G78E	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	78	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					GAGTACTCTGGGGGTCTCGGC	0.537													29	74					0	0	1	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453515	143453515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143453515C>T	uc003wdk.3	-	1	1329	c.1237G>A	c.(1237-1239)GAA>AAA	p.E413K	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	413	Potential.					integral to membrane					0	Melanoma(164;0.0903)					AGCTTCTCTTCTTCCTCTATT	0.378													23	168					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143632663	143632663	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143632663T>A	uc011ktv.1	+	1	338	c.338T>A	c.(337-339)GTT>GAT	p.V113D		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ATTGAGTTTGTTCTCCTGGCA	0.547													41	60					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657991	143657991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143657991G>A	uc003wds.1	+	1	972	c.928G>A	c.(928-930)GGG>AGG	p.G310R		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					GAAATTCTCTGGGTTAACATC	0.433													10	36					0	0	1	0	0
OR6B1	135946	broad.mit.edu	37	7	143701533	143701533	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143701533C>T	uc003wdt.1	+	1	444	c.444C>T	c.(442-444)TCC>TCT	p.S148S		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					CTCTTGGTTCCTGGGCCATTG	0.557													24	27					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747551	143747551	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143747551C>T	uc011ktw.1	+	1	57	c.57C>T	c.(55-57)AGC>AGT	p.S19S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TTCCACTCAGCCTAAGGATTC	0.517													44	52					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143806753	143806753	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143806753C>T	uc011ktz.1	+	1	78	c.78C>T	c.(76-78)CTC>CTT	p.L26L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CGATTCTCCTCTGTGGACTCT	0.512													28	81					0	0	1	0	0
OR2A14	135941	broad.mit.edu	37	7	143826610	143826610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:143826610G>A	uc011kua.1	+	1	405	c.405G>A	c.(403-405)ATG>ATA	p.M135I		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ATAGCCTCATGAGCTGGAGAG	0.527													40	129					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098195	144098195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:144098195C>T	uc011kue.1	-	4	788	c.788G>A	c.(787-789)GGG>GAG	p.G263E		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	263					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					TTCCGGGGGCCCCTGCTTGTG	0.572													11	24					0	0	1	0	0
TPK1	27010	broad.mit.edu	37	7	144288569	144288569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:144288569G>A	uc003weq.2	-	7	551	c.448C>T	c.(448-450)CCT>TCT	p.P150S	TPK1_uc003weo.2_Intron|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Intron|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	150					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	ATTGGAAAAGGAGTGATGTGA	0.443													12	68					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829338	146829338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:146829338G>A	uc003weu.1	+	8	1601	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	362	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATTTTACAGGGAAATTTGAGC	0.433										HNSCC(39;0.1)			41	53					0	0	1	0	0
PDIA4	9601	broad.mit.edu	37	7	148702420	148702420	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:148702420G>A	uc003wff.2	-	9	1617	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	445					cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			TGTACTCAGGGAAGTCCTTGG	0.587											OREG0018420	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	148963745	148963745	+	RNA	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:148963745A>T	uc003wfr.3	+	2		c.507A>T								Homo sapiens cDNA FLJ36716 fis, clone UTERU2010651.																		CGGCTGGAGAATGTGGAGAAC	0.652													64	56					0	0	1	0	0
ZNF467	168544	broad.mit.edu	37	7	149467602	149467602	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149467602G>A	uc003wgd.2	-	3	219	c.78C>T	c.(76-78)CCC>CCT	p.P26P	ZNF467_uc003wgc.2_Silent_p.P26P	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	26					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ATCCTTCCCTGGGCTCACTTT	0.532													53	38					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149489749	149489749	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149489749G>A	uc010lpk.2	+	39	5805	c.5805G>A	c.(5803-5805)CGG>CGA	p.R1935R		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1935	TSP type-1 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGTCCTTCCGGAGCTCCAACA	0.692													15	34					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149493597	149493597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149493597G>A	uc010lpk.2	+	45	6673	c.6673G>A	c.(6673-6675)GAG>AAG	p.E2225K		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2225					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTGGGCTGCGAGCCAGGTAC	0.667													25	92					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149500612	149500612	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149500612C>T	uc010lpk.2	+	55	8013	c.8013C>T	c.(8011-8013)CCC>CCT	p.P2671P		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2671	TIL 4.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTGCCTGCCCCTCTCTGAGT	0.667													17	26					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149506157	149506157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149506157C>T	uc010lpk.2	+	64	9149	c.9149C>T	c.(9148-9150)TCT>TTT	p.S3050F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3050	TSP type-1 10.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCCCTTGGTCTCCGTGCTCC	0.687													19	4					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149524869	149524869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:149524869G>A	uc010lpk.2	+	107	14777	c.14777G>A	c.(14776-14778)GGG>GAG	p.G4926E	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_RNA	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4926					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGCCCCCTGGGGAAACGTGG	0.632													3	15					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164104	150164104	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150164104C>T	uc003whj.2	+	2	648	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	106						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TCGGCCATTTCACAAGGGAGG	0.507													38	44					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171631	150171631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150171631G>A	uc003whj.2	+	4	1544	c.1214G>A	c.(1213-1215)GGA>GAA	p.G405E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	405	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CGGGCAACAGGAGAAGAAGAG	0.428													33	46					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325038	150325038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150325038C>T	uc003whn.2	-	3	1072	c.648G>A	c.(646-648)ATG>ATA	p.M216I	GIMAP6_uc003whm.2_Missense_Mutation_p.M136I	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	216							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAACTTTCTCCATGAGCTCTC	0.527													45	127					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325593	150325593	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150325593C>T	uc003whn.2	-	3	517	c.93G>A	c.(91-93)AGG>AGA	p.R31R	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	31							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTTCTTTCTCCCTTAGACCTA	0.537													58	163					0	0	1	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390043	150390043	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150390043G>A	uc003who.2	+	3	757	c.669G>A	c.(667-669)CAG>CAA	p.Q223Q	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	223						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCTAATACAGAGGTCTAAAT	0.403													16	34					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150501930	150501930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150501930G>A	uc003whx.1	+	7	760	c.682G>A	c.(682-684)GAA>AAA	p.E228K		NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	228						integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGACCAGAAGGAAATGTTGGA	0.522													54	40					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150554810	150554810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150554810C>T	uc003why.1	+	3	5470	c.1252C>T	c.(1252-1254)CTC>TTC	p.L418F	ABP1_uc003whz.1_Missense_Mutation_p.L418F|ABP1_uc003wia.1_Missense_Mutation_p.L418F	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	418					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	AGCCCTCTGCCTCTTTGAAAT	0.582													18	42					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150654535	150654535	+	Silent	SNP	G	A	A	rs146297032		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150654535G>A	uc003wic.2	-	5	985	c.972C>T	c.(970-972)CTC>CTT	p.L324L	KCNH2_uc003wib.2_5'Flank|KCNH2_uc011kux.1_Silent_p.L228L|KCNH2_uc003wid.2_5'Flank|KCNH2_uc003wie.2_Silent_p.L324L	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	324	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGTAGCGCACGAGGTCGGAGT	0.632													4	29					0	0	1	0	0
NOS3	4846	broad.mit.edu	37	7	150698983	150698983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150698983C>T	uc003wif.2	+	13	1873	c.1577C>T	c.(1576-1578)TCC>TTC	p.S526F	NOS3_uc011kuy.1_Missense_Mutation_p.S320F|NOS3_uc011kuz.1_Missense_Mutation_p.S526F|NOS3_uc011kva.1_Missense_Mutation_p.S526F|NOS3_uc011kvb.1_Missense_Mutation_p.S526F	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	526	Flavodoxin-like.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CTGTATGGCTCCGAGACCGGC	0.652													14	27					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150720253	150720253	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:150720253G>A	uc011kvc.1	-	4	776	c.700C>T	c.(700-702)CGA>TGA	p.R234*	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	234	Lumenal (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCACGCATCGAAGGAGGAAG	0.537													59	148					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151716746	151716746	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:151716746C>T	uc003wkp.2	+	9	1415	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	GALNTL5_uc003wkq.2_Nonsense_Mutation_p.R149*|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Nonsense_Mutation_p.R287*	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	398	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		GTTTTTTCTTCGAAAGCCTGG	0.378													18	31					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970798	151970798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:151970798G>A	uc003wla.2	-	7	1223	c.1004C>T	c.(1003-1005)CCT>CTT	p.P335L		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	335					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACATCTTTCAGGAGCTTGGTC	0.388			N		medulloblastoma								10	169					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970854	151970854	+	Silent	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:151970854G>T	uc003wla.2	-	7	1167	c.948C>A	c.(946-948)ACC>ACA	p.T316T		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	316					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AATCCTGAAAGGTGCCGGCTC	0.433			N		medulloblastoma								7	185					0.000157383	0.000157678	1	1	0
MLL3	58508	broad.mit.edu	37	7	151970883	151970883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:151970883G>A	uc003wla.2	-	7	1138	c.919C>T	c.(919-921)CAT>TAT	p.H307Y		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	307					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CAAGGATAATGATACATCTGG	0.438			N		medulloblastoma								10	130					0	0	1	0	0
ACTR3B	57180	broad.mit.edu	37	7	152551575	152551575	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:152551575G>A	uc003wle.1	+	12	1311	c.1194G>A	c.(1192-1194)AAG>AAA	p.K398K	ACTR3B_uc003wlf.1_Silent_p.K328K|ACTR3B_uc003wlg.1_Silent_p.K310K|ACTR3B_uc011kvp.1_Silent_p.K310K	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	398					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		ACACCAAGAAGGACTATGAAG	0.532													17	67					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154429576	154429576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:154429576C>T	uc003wlk.2	+	6	802	c.673C>T	c.(673-675)CCT>TCT	p.P225S	DPP6_uc003wli.2_Missense_Mutation_p.P161S|DPP6_uc003wlm.2_Missense_Mutation_p.P163S|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	225	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GAGCAAAATTCCTCATGGGTA	0.403													3	6					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154645528	154645528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:154645528G>A	uc003wlk.2	+	17	1834	c.1705G>A	c.(1705-1707)GAT>AAT	p.D569N	DPP6_uc003wli.2_Missense_Mutation_p.D505N|DPP6_uc003wlm.2_Missense_Mutation_p.D507N|DPP6_uc011kvq.1_Missense_Mutation_p.D462N	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	569	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			CAACACAACAGATAAGAAAAG	0.428													23	43					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157930989	157930989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:157930989G>A	uc003wno.2	-	7	1250	c.1129C>T	c.(1129-1131)CCA>TCA	p.P377S	PTPRN2_uc003wnp.2_Missense_Mutation_p.P360S|PTPRN2_uc003wnq.2_Missense_Mutation_p.P377S|PTPRN2_uc003wnr.2_Missense_Mutation_p.P339S|PTPRN2_uc011kwa.1_Missense_Mutation_p.P400S	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	377	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CAGTCACCTGGAAAGCTGTCT	0.667													11	14					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497620	1497620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:1497620C>T	uc003wpl.2	+	2	858	c.761C>T	c.(760-762)CCC>CTC	p.P254L	DLGAP2_uc003wpm.2_Missense_Mutation_p.P254L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	333					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CTGCAGAGCCCCTTCGGGGAC	0.662													19	85					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2044139	2044139	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2044139C>T	uc003wpx.3	+	18	2316	c.2178C>T	c.(2176-2178)TCC>TCT	p.S726S	MYOM2_uc011kwi.1_Silent_p.S151S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	726	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ACGGCCACTCCATGACCCTCG	0.587													68	62					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2077157	2077157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2077157G>A	uc003wpx.3	+	32	3875	c.3737G>A	c.(3736-3738)GGA>GAA	p.G1246E	MYOM2_uc011kwi.1_Missense_Mutation_p.G671E	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1246					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ACCCCAGAAGGAATACGACTT	0.448													10	43					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2806845	2806845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2806845C>T	uc011kwk.1	-	68	10771	c.10381G>A	c.(10381-10383)GGA>AGA	p.G3461R	CSMD1_uc011kwj.1_Missense_Mutation_p.G2775R|CSMD1_uc010lrg.2_Missense_Mutation_p.G1352R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3461	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTAAATTTTCCAAAGTCTTTT	0.333													6	38					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2806851	2806851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2806851C>T	uc011kwk.1	-	68	10765	c.10375G>A	c.(10375-10377)GAC>AAC	p.D3459N	CSMD1_uc011kwj.1_Missense_Mutation_p.D2773N|CSMD1_uc010lrg.2_Missense_Mutation_p.D1350N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3459	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTTCCAAAGTCTTTTCCATGA	0.333													16	31					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2807782	2807782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2807782C>T	uc011kwk.1	-	67	10678	c.10288G>A	c.(10288-10290)GAA>AAA	p.E3430K	CSMD1_uc011kwj.1_Missense_Mutation_p.E2744K|CSMD1_uc010lrg.2_Missense_Mutation_p.E1321K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3430	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGTCATTTTCGAACTTGCTT	0.423													27	128					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2830723	2830723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2830723C>T	uc011kwk.1	-	57	9232	c.8842G>A	c.(8842-8844)GAA>AAA	p.E2948K	CSMD1_uc011kwj.1_Missense_Mutation_p.E2277K|CSMD1_uc010lrg.2_Missense_Mutation_p.E958K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2948	Extracellular (Potential).|Sushi 22.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCCCCATTTCACAGGAGAAG	0.557													60	123					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855558	2855558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:2855558C>T	uc011kwk.1	-	54	8745	c.8355G>A	c.(8353-8355)TGG>TGA	p.W2785*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.W2114*|CSMD1_uc010lrg.2_Nonsense_Mutation_p.W795*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2785	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GAGGGCTACTCCACTGGCCGT	0.557													7	36					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3000143	3000143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3000143C>T	uc011kwk.1	-	41	6478	c.6088G>A	c.(6088-6090)GAA>AAA	p.E2030K	CSMD1_uc011kwj.1_Missense_Mutation_p.E1422K|CSMD1_uc010lrg.2_Missense_Mutation_p.E98K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2030	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTTTGAATTTCAAGGAAGTCA	0.423													27	118					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3141789	3141789	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3141789G>A	uc011kwk.1	-	26	4423	c.4033C>T	c.(4033-4035)CTG>TTG	p.L1345L	CSMD1_uc011kwj.1_Silent_p.L737L|CSMD1_uc003wqe.2_Silent_p.L501L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1345	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCTTCAGCAGGATGTCACTG	0.557											OREG0018505	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	32					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3165341	3165341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3165341C>T	uc011kwk.1	-	25	4219	c.3829G>A	c.(3829-3831)GAA>AAA	p.E1277K	CSMD1_uc011kwj.1_Missense_Mutation_p.E669K|CSMD1_uc003wqe.2_Missense_Mutation_p.E433K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1277	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCACCACATTCCGCTGTAGAA	0.453													14	70					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3216769	3216769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3216769G>A	uc011kwk.1	-	21	3602	c.3212C>T	c.(3211-3213)TCC>TTC	p.S1071F	CSMD1_uc011kwj.1_Missense_Mutation_p.S463F|CSMD1_uc003wqe.2_Missense_Mutation_p.S227F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1071	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGAAGCAGGAAAACGTCAG	0.557													26	84					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3245068	3245068	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3245068G>A	uc011kwk.1	-	18	3123	c.2733C>T	c.(2731-2733)CCC>CCT	p.P911P	CSMD1_uc011kwj.1_Silent_p.P303P|CSMD1_uc003wqe.2_Silent_p.P67P	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	911	Extracellular (Potential).|Sushi 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACAGACGAGGGGCTCGTCGT	0.597													3	7					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265630	3265630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3265630C>T	uc011kwk.1	-	14	2255	c.1865G>A	c.(1864-1866)CGA>CAA	p.R622Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R14Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	622	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TAGGTGAATTCGACTTCCTGG	0.413													16	16					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265685	3265685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3265685C>T	uc011kwk.1	-	14	2200	c.1810G>A	c.(1810-1812)GAA>AAA	p.E604K	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	604	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCCCATATTCCTCTGGATAA	0.373													12	17					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3326245	3326245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:3326245G>A	uc011kwk.1	-	12	1943	c.1553C>T	c.(1552-1554)GCT>GTT	p.A518V		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	518	CUB 3.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGGTAAACAGCTTTAAACCC	0.463													4	10					0	0	1	0	0
DEFA4	1669	broad.mit.edu	37	8	6794401	6794401	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:6794401G>A	uc003wqu.1	-	2	72	c.21C>T	c.(19-21)CTC>CTT	p.L7L		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	7					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GAATAGCAGCGAGGAGGGCGA	0.617													13	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	7808223	7808223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:7808223C>T	uc010lro.1	+	6	554	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001039615	NP_001034704			zinc finger protein 705D																		CACATGATATCCATGCATCCT	0.333													30	27					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8175897	8175897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:8175897G>A	uc003wsh.3	-	5	3988	c.3988C>T	c.(3988-3990)CGC>TGC	p.R1330C		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1330							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						ACCAGCTCGCGCCGAGGCCCC	0.662													31	65					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10387076	10387076	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10387076A>G	uc003wta.2	+	2	229	c.214A>G	c.(214-216)ATG>GTG	p.M72V	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	72	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CACAGGGGGGATGGAGGCGGA	0.507													4	251					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10469863	10469863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10469863G>A	uc003wtc.2	-	4	1974	c.1745C>T	c.(1744-1746)TCA>TTA	p.S582L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	582					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTTAAAGATGAAAGACTCAG	0.662													21	135					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10470384	10470384	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10470384C>T	uc003wtc.2	-	4	1453	c.1224G>A	c.(1222-1224)TGG>TGA	p.W408*		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	408					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGGGATTCGTCCAGATTTCAT	0.672													33	55					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10480680	10480680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10480680G>A	uc003wtc.2	-	2	261	c.32C>T	c.(31-33)CCG>CTG	p.P11L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	11					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACGGTGGCTCGGGGCCTGGGC	0.642													36	57					0	0	1	0	0
C8orf74	203076	broad.mit.edu	37	8	10555178	10555179	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10555178_10555179CC>TT	uc003wtd.1	+	3	340_341	c.311_312CC>TT	c.(310-312)ACC>ATT	p.T104I	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	104											0				COAD - Colon adenocarcinoma(149;0.0811)		CATTTCAACACCACCCACCTGC	0.569													64	106					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10756221	10756221	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:10756221G>A	uc003wtk.1	-	3	1194	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	389	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GAACCACCACGAAGATCCCAA	0.532													21	47					0	0	1	0	0
TUSC3	7991	broad.mit.edu	37	8	15508299	15508299	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:15508299T>G	uc003wwt.2	+	3	612	c.402T>G	c.(400-402)GAT>GAG	p.D134E	TUSC3_uc003wwr.2_Missense_Mutation_p.D134E|TUSC3_uc003wws.2_Missense_Mutation_p.D134E|TUSC3_uc003wwu.2_Missense_Mutation_p.D134E|TUSC3_uc003wwv.2_Missense_Mutation_p.D134E|TUSC3_uc003www.2_Missense_Mutation_p.D134E|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Missense_Mutation_p.D134E	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	134					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		TGGACTATGATGAGGGGACAG	0.358													25	119					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15967636	15967636	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:15967636G>A	uc003wwz.2	-	10	1512	c.1314C>T	c.(1312-1314)GCC>GCT	p.A438A	MSR1_uc010lsu.2_Silent_p.A456A|MSR1_uc003wxa.2_Silent_p.A375A	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	438	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AATGTGAACAGGCTCTTGTCC	0.368													12	60					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	15967721	15967721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:15967721C>T	uc003wwz.2	-	10	1427	c.1229G>A	c.(1228-1230)GGT>GAT	p.G410D	MSR1_uc010lsu.2_Missense_Mutation_p.G428D|MSR1_uc003wxa.2_Missense_Mutation_p.G347D	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	410	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CCATATTGGACCAGTACCTGC	0.373													18	69					0	0	1	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17055912	17055912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:17055912C>T	uc003wxe.2	+	6	863	c.466C>T	c.(466-468)CAT>TAT	p.H156Y		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	156	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		GATGGATCATCATTGTCCATG	0.259													8	17					0	0	1	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17063272	17063272	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:17063272C>T	uc003wxe.2	+	7	982	c.585C>T	c.(583-585)ATC>ATT	p.I195I		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	195						integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		AGTATTTTATCAAATTTTGGA	0.308													30	81					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17417987	17417987	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:17417987C>T	uc011kyc.1	+	9	1618	c.1449C>T	c.(1447-1449)TCC>TCT	p.S483S	SLC7A2_uc011kyd.1_Silent_p.S522S|SLC7A2_uc011kye.1_Silent_p.S523S|SLC7A2_uc011kyf.1_Silent_p.S483S	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	483	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TCTGCCCCTCCCTTCTGCCAA	0.537													24	116					0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18729866	18729866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:18729866C>T	uc003wza.2	-	3	611	c.508G>A	c.(508-510)GAA>AAA	p.E170K		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	170					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		AGCTCTTTTTCCACCTGCTGA	0.443													39	38					0	0	1	0	0
SLC18A1	6570	broad.mit.edu	37	8	20038433	20038433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:20038433C>T	uc011kyq.1	-	3	514	c.43G>A	c.(43-45)GAG>AAG	p.E15K	SLC18A1_uc003wzm.2_Missense_Mutation_p.E15K|SLC18A1_uc011kyr.1_Missense_Mutation_p.E15K|SLC18A1_uc003wzn.2_Missense_Mutation_p.E15K|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.E15K	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	15	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		GCTCTCCCCTCCTTCAGCAAC	0.602													5	12					0	0	1	0	0
EPB49	2039	broad.mit.edu	37	8	21925112	21925112	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:21925112C>T	uc011kyt.1	+	4	397	c.168C>T	c.(166-168)ATC>ATT	p.I56I	EPB49_uc010ltl.2_Silent_p.I56I|EPB49_uc011kys.1_Silent_p.I31I|EPB49_uc010ltn.2_Silent_p.I31I|EPB49_uc011kyu.1_Silent_p.I56I|EPB49_uc011kyv.1_Silent_p.I56I|EPB49_uc010ltq.2_Silent_p.I56I	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	56					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		TCCTGGACATCGAGCGGCCCG	0.602													20	64					0	0	1	0	0
FAM160B2	64760	broad.mit.edu	37	8	21951999	21951999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:21951999G>A	uc011kyx.1	+	2	145	c.94G>A	c.(94-96)GGC>AGC	p.G32S	FAM160B2_uc011kyw.1_Missense_Mutation_p.G32S|FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	32											0						GCACTGGAAGGGCATCACGCA	0.662													33	57					0	0	1	0	0
FAM160B2	64760	broad.mit.edu	37	8	21958161	21958161	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:21958161G>A	uc011kyx.1	+	11	1449	c.1398G>A	c.(1396-1398)GGG>GGA	p.G466G	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	466											0						CCCACGAGGGGATCATCCACA	0.622													18	78					0	0	1	0	0
TNFRSF10B	8795	broad.mit.edu	37	8	22884757	22884757	+	Silent	SNP	G	A	A	rs141284481		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:22884757G>A	uc003xcu.2	-	7	1118	c.825C>T	c.(823-825)ATC>ATT	p.I275I	TNFRSF10B_uc003xcs.1_Silent_p.I40I|TNFRSF10B_uc003xct.2_Silent_p.I246I|TNFRSF10B_uc011kzq.1_Silent_p.I95I|TNFRSF10B_uc003xcv.2_Silent_p.I173I	NM_003842	NP_003833	O14763	TR10B_HUMAN	tumor necrosis factor receptor superfamily,	275	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cell surface receptor linked signaling pathway|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|positive regulation of I-kappaB kinase/NF-kappaB cascade	plasma membrane	caspase activator activity|receptor activity|TRAIL binding				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0179)|COAD - Colon adenocarcinoma(73;0.0703)		AGATACTCACGATCTCATTGA	0.557													13	61					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22960647	22960647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:22960647C>T	uc003xcy.2	+	1	214	c.13C>T	c.(13-15)CCC>TCC	p.P5S	TNFRSF10C_uc003xcx.2_RNA|TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	5					apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GGCCCGGATCCCCAAGACCCT	0.701													4	33					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256963	24256963	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24256963C>T	uc003xdz.2	+	10	1207	c.987C>T	c.(985-987)TCC>TCT	p.S329S	ADAMDEC1_uc010lub.2_Silent_p.S250S|ADAMDEC1_uc011lab.1_Silent_p.S250S	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	329	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CCTTGTGTTCCCCATCTTCGG	0.333													23	49					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24342819	24342819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24342819G>A	uc003xeb.2	+	10	1018	c.905G>A	c.(904-906)GGA>GAA	p.G302E	ADAM7_uc003xec.2_Missense_Mutation_p.G74E	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	302	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CATGTGCAAGGAATTTCTTAT	0.343													30	55					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24342868	24342868	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24342868C>T	uc003xeb.2	+	10	1067	c.954C>T	c.(952-954)ATC>ATT	p.I318I	ADAM7_uc003xec.2_Silent_p.I90I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	318	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CCACCAGTATCATTAAGGTGG	0.363													5	55					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24350738	24350738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24350738G>A	uc003xeb.2	+	16	1951	c.1838G>A	c.(1837-1839)GGA>GAA	p.G613E	ADAM7_uc003xec.2_Missense_Mutation_p.G385E	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	613	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TGTGGAGAGGGAATGGTAAGA	0.363													8	21					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24356821	24356821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24356821G>A	uc003xeb.2	+	17	2028	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	ADAM7_uc003xec.2_Missense_Mutation_p.E411K	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	639	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TCAGTGCAATGAAAATCCTGT	0.313													20	20					0	0	1	0	0
NEFL	4747	broad.mit.edu	37	8	24811137	24811137	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:24811137G>A	uc003xee.2	-	3	1444	c.1342C>T	c.(1342-1344)CAA>TAA	p.Q448*		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	448	Tail.|Tail, subdomain B (acidic).				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TGCTCCTCTTGGACATGGCTG	0.547													53	44					0	0	1	0	0
DOCK5	80005	broad.mit.edu	37	8	25136116	25136116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:25136116C>T	uc003xeg.2	+	5	393	c.256C>T	c.(256-258)CCC>TCC	p.P86S	DOCK5_uc010luf.1_RNA|DOCK5_uc003xef.2_Missense_Mutation_p.P86S	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	86						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		TGGCGAGCTCCCCCTGGTGCA	0.557													5	29					0	0	1	0	0
STMN4	81551	broad.mit.edu	37	8	27098618	27098618	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:27098618G>A	uc003xfk.2	-	4	385	c.271C>T	c.(271-273)CTG>TTG	p.L91L	STMN4_uc003xfj.2_Silent_p.L118L|STMN4_uc011lai.1_Silent_p.L118L|STMN4_uc011laj.1_Silent_p.L82L|STMN4_uc011lak.1_Silent_p.L118L|STMN4_uc010luo.2_Silent_p.L91L			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	91	Potential.				intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		ATCTCTTCCAGGGATGGGTCT	0.562													35	43					0	0	1	0	0
EPHX2	2053	broad.mit.edu	37	8	27396183	27396183	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:27396183T>C	uc003xfu.2	+	14	1331	c.1250T>C	c.(1249-1251)TTA>TCA	p.L417S	EPHX2_uc010lut.1_Missense_Mutation_p.L417S|EPHX2_uc010luu.2_Missense_Mutation_p.L385S|EPHX2_uc010luv.2_Missense_Mutation_p.L351S|EPHX2_uc003xfv.2_Missense_Mutation_p.L364S|EPHX2_uc010luw.2_Missense_Mutation_p.L351S	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	417	Epoxide hydrolase.				aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	CAGAGTGTTTTATCCATGCAT	0.403													12	28					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27516389	27516389	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:27516389C>T	uc003xga.1	+	5	843	c.702C>T	c.(700-702)ATC>ATT	p.I234I	SCARA3_uc003xgb.1_Silent_p.I234I	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	234	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		CCGAGTGGATCCACGGGATCC	0.597													17	28					0	0	1	0	0
SCARA5	286133	broad.mit.edu	37	8	27779759	27779759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:27779759G>A	uc003xgj.2	-	4	685	c.245C>T	c.(244-246)TCC>TTC	p.S82F	SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Missense_Mutation_p.S39F|SCARA5_uc003xgl.2_Missense_Mutation_p.S82F	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	82	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		GCGCGGCCTGGACACTGCGGA	0.557													4	32					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30694898	30694899	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30694898_30694899CC>AT	uc003xil.2	-	3	7752_7753	c.7752_7753GG>AT	c.(7750-7755)AAGGAT>AAATAT	p.D2585Y		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2585										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTCAATGTATCCTTCATGTATT	0.401													26	38					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30700699	30700699	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30700699G>A	uc003xil.2	-	1	5835	c.5835C>T	c.(5833-5835)TCC>TCT	p.S1945S		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1945										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GCCCAATAGGGGAAATTGGTT	0.338													44	21					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30700722	30700722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30700722C>T	uc003xil.2	-	1	5812	c.5812G>A	c.(5812-5814)GAT>AAT	p.D1938N		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1938										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTGTTTAAATCTTTAGACAAA	0.353													37	24					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30701143	30701143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30701143C>T	uc003xil.2	-	1	5391	c.5391G>A	c.(5389-5391)ATG>ATA	p.M1797I		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1797										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AACAATGCTCCATTATGGCTT	0.323													21	25					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30704934	30704934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30704934C>T	uc003xil.2	-	1	1600	c.1600G>A	c.(1600-1602)GAA>AAA	p.E534K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	534										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GTAGAAAATTCTTCAGAACTC	0.333													6	54					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30706440	30706440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30706440G>A	uc003xil.2	-	1	94	c.94C>T	c.(94-96)CCT>TCT	p.P32S	TEX15_uc011lbc.1_Missense_Mutation_p.P419S	NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	32										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTGTGAAGAGGAAAAGAAGCA	0.383													33	55					0	0	1	0	0
PURG	29942	broad.mit.edu	37	8	30889494	30889494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30889494C>T	uc003xin.2	-	1	824	c.805G>A	c.(805-807)GTG>ATG	p.V269M	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.V269M	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	269	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		TTATTGTCCACTCTGAAAGAA	0.438													22	45					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30999284	30999284	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:30999284C>T	uc003xio.3	+	26	4014	c.3226C>T	c.(3226-3228)CTG>TTG	p.L1076L	WRN_uc010lvk.2_Silent_p.L543L	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1076					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		GAAGTTGCTTCTGCCTAGGTT	0.338			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				12	12					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	31015036	31015036	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:31015036C>T	uc003xio.3	+	33	4760	c.3972C>T	c.(3970-3972)CCC>CCT	p.P1324P	WRN_uc010lvk.2_Silent_p.P791P	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1324					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		GAAACCCTCCCGTCAACTCAG	0.473			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				15	28					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35544123	35544123	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:35544123T>G	uc003xjr.1	+	7	1308	c.980T>G	c.(979-981)TTG>TGG	p.L327W	UNC5D_uc003xjs.1_Missense_Mutation_p.L322W|UNC5D_uc003xjt.1_Missense_Mutation_p.L96W	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	327	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TGTGAACATTTGCGGATCCGG	0.383													27	34					0	0	1	0	0
GOT1L1	137362	broad.mit.edu	37	8	37796275	37796275	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:37796275G>A	uc011lbj.1	-	2	340	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	80					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			GAGAGGCCTGGATGAATGATT	0.527													7	8					0	0	1	0	0
ADAM32	203102	broad.mit.edu	37	8	39091502	39091502	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:39091502C>T	uc003xmt.3	+	16	1964	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F	ADAM32_uc011lch.1_Silent_p.F474F|ADAM32_uc003xmu.3_Silent_p.F467F|ADAM32_uc003xmv.2_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	573	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTTATGCTTTCGTACGAGATT	0.393													4	13					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39442147	39442147	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:39442147C>T	uc003xni.2	+	1	6	c.6C>T	c.(4-6)TTC>TTT	p.F2F	ADAM18_uc003xnh.2_Silent_p.F2F|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.F2F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	2					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GAGCCATGTTCCTTCTCCTCG	0.627													12	59					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39564383	39564383	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:39564383C>T	uc003xni.2	+	18	1977	c.1977C>T	c.(1975-1977)TCC>TCT	p.S659S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.S635S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	659	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AGTTTGGTTCCCCAGGGGGTA	0.318													23	61					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39604032	39604032	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:39604032G>A	uc003xnj.2	-	19	2208	c.2133C>T	c.(2131-2133)TTC>TTT	p.F711F	ADAM2_uc003xnk.2_Silent_p.F692F|ADAM2_uc011lck.1_Silent_p.F648F|ADAM2_uc003xnl.2_Silent_p.F555F	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	711	Cytoplasmic (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TTTTCCTTTGGAAATTAACTT	0.279													35	26					0	0	1	0	0
ADAM2	2515	broad.mit.edu	37	8	39607206	39607206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:39607206C>T	uc003xnj.2	-	17	1930	c.1855G>A	c.(1855-1857)GAC>AAC	p.D619N	ADAM2_uc003xnk.2_Missense_Mutation_p.D600N|ADAM2_uc011lck.1_Missense_Mutation_p.D556N|ADAM2_uc003xnl.2_Missense_Mutation_p.D463N	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	619	Extracellular (Potential).|EGF-like.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TTGCATTTGTCAGTAGTACAA	0.323													27	67					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41551491	41551491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:41551491G>A	uc003xok.2	-	29	3541	c.3457C>T	c.(3457-3459)CCT>TCT	p.P1153S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.P469S|ANK1_uc003xoi.2_Missense_Mutation_p.P1153S|ANK1_uc003xoj.2_Missense_Mutation_p.P1153S|ANK1_uc003xol.2_Missense_Mutation_p.P1153S|ANK1_uc003xom.2_Missense_Mutation_p.P1194S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1153					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GTCCAGGAAGGAGGTAGTGGG	0.657													22	17					0	0	1	0	0
MYST3	7994	broad.mit.edu	37	8	41790361	41790361	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:41790361G>A	uc010lxb.2	-	18	5921	c.5377C>T	c.(5377-5379)CAG>TAG	p.Q1793*	MYST3_uc010lxc.2_Nonsense_Mutation_p.Q1793*|MYST3_uc003xon.3_Nonsense_Mutation_p.Q1793*	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1793					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GGAGCCAGCTGAGCCAGTCCT	0.527													101	78					0	0	1	0	0
MYST3	7994	broad.mit.edu	37	8	41812901	41812901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:41812901G>A	uc010lxb.2	-	10	2055	c.1511C>T	c.(1510-1512)CCA>CTA	p.P504L	MYST3_uc010lxc.2_Missense_Mutation_p.P504L|MYST3_uc003xon.3_Missense_Mutation_p.P504L|MYST3_uc010lxd.2_Missense_Mutation_p.P504L	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	504	Catalytic.|Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GCGGACTTGTGGATCAGGGGG	0.413													6	62					0	0	1	0	0
MYST3	7994	broad.mit.edu	37	8	41844996	41844996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:41844996G>A	uc010lxb.2	-	4	1230	c.686C>T	c.(685-687)TCC>TTC	p.S229F	MYST3_uc010lxc.2_Missense_Mutation_p.S229F|MYST3_uc003xon.3_Missense_Mutation_p.S229F|MYST3_uc010lxd.2_Missense_Mutation_p.S229F	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	229	PHD-type 1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GTCGGCACAGGAGATGAGTTC	0.423													63	109					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42294575	42294575	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:42294575G>A	uc010lxl.2	-	8	2149	c.1455C>T	c.(1453-1455)CTC>CTT	p.L485L	SLC20A2_uc010lxm.2_Silent_p.L485L|SLC20A2_uc003xpe.2_Silent_p.L485L|SLC20A2_uc011lcu.1_Silent_p.L287L	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	485	Helical; (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AATGGAACAGGAGGTGAACCT	0.597													8	38					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42294623	42294623	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:42294623G>A	uc010lxl.2	-	8	2101	c.1407C>T	c.(1405-1407)GAC>GAT	p.D469D	SLC20A2_uc010lxm.2_Silent_p.D469D|SLC20A2_uc003xpe.2_Silent_p.D469D|SLC20A2_uc011lcu.1_Silent_p.D271D	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	469	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CCTCTGCAGGGTCCTCTCGCG	0.647													12	43					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587570	42587570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:42587570G>A	uc003xpi.1	+	5	1248	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	374	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CAAAGTCCTCGAAAAAAAGAA	0.388													6	41					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48309023	48309023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:48309023C>T	uc003xqd.2	+	6	622	c.613C>T	c.(613-615)CCT>TCT	p.P205S	KIAA0146_uc011lcz.1_Intron|KIAA0146_uc011lda.1_Intron|KIAA0146_uc011ldb.1_Missense_Mutation_p.P205S|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.P135S|KIAA0146_uc011ldd.1_Missense_Mutation_p.P145S|KIAA0146_uc003xqe.2_Intron|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Intron	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	205											0		Lung NSC(58;0.175)				TTCAGAATCCCCTCACAAATA	0.363													21	45					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48614415	48614415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:48614415G>A	uc003xqd.2	+	13	1915	c.1906G>A	c.(1906-1908)GAC>AAC	p.D636N	KIAA0146_uc011ldb.1_Missense_Mutation_p.D636N|KIAA0146_uc010lxs.2_Missense_Mutation_p.D111N|KIAA0146_uc011ldc.1_Missense_Mutation_p.D566N|KIAA0146_uc011ldd.1_Missense_Mutation_p.D576N|KIAA0146_uc003xqe.2_Missense_Mutation_p.D111N|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.D325N|KIAA0146_uc010lxt.2_Missense_Mutation_p.D325N|KIAA0146_uc011ldf.1_Missense_Mutation_p.D141N|KIAA0146_uc011ldg.1_Missense_Mutation_p.D126N|KIAA0146_uc010lxv.1_Missense_Mutation_p.D130N	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	636											0		Lung NSC(58;0.175)				CTGCTTAAGAGACATTCTCCA	0.418													36	146					0	0	1	0	0
FAM150A	389658	broad.mit.edu	37	8	53452456	53452456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:53452456G>A	uc003xrd.2	-	3	465	c.260C>T	c.(259-261)TCA>TTA	p.S87L	FAM150A_uc011ldt.1_Missense_Mutation_p.S87L	NM_207413	NP_997296	Q6UXT8	F150A_HUMAN	hypothetical protein LOC389658 precursor	87						extracellular region					0		Lung NSC(129;0.0919)|all_epithelial(80;0.125)|all_lung(136;0.17)				GCATTCTGGTGAAAATGTGAC	0.383													30	33					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54141904	54141904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:54141904C>T	uc003xrh.1	-	3	1471	c.1096G>A	c.(1096-1098)GAT>AAT	p.D366N	OPRK1_uc003xri.1_Missense_Mutation_p.D366N|OPRK1_uc010lyc.1_Missense_Mutation_p.D277N	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	366	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TAAGCAGGATCCTGAACTGTA	0.478													27	39					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54163574	54163574	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:54163574G>A	uc003xrh.1	-	1	399	c.24C>T	c.(22-24)TTC>TTT	p.F8F	OPRK1_uc003xri.1_Silent_p.F8F|OPRK1_uc010lyc.1_5'UTR	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	8	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GCTCCCCGCGGAAGATCTGGA	0.726													7	14					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55534822	55534822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55534822G>A	uc003xsd.1	+	3	909	c.761G>A	c.(760-762)GGA>GAA	p.G254E	RP1_uc011ldy.1_Missense_Mutation_p.G254E	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	254					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TACCCCAAGGGAAATGCAAAG	0.418													19	32					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537455	55537455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55537455G>A	uc003xsd.1	+	4	1161	c.1013G>A	c.(1012-1014)CGA>CAA	p.R338Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	338					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATGAAAGTTCGATTCAGAATA	0.323													8	29					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537569	55537569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55537569G>A	uc003xsd.1	+	4	1275	c.1127G>A	c.(1126-1128)CGA>CAA	p.R376Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	376					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACAGAAAGTCGATCATCTGGT	0.413													17	17					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538221	55538221	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55538221G>A	uc003xsd.1	+	4	1927	c.1779G>A	c.(1777-1779)AAG>AAA	p.K593K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	593					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTGGTATCAAGAACTTCAAAA	0.338													45	49					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539695	55539695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55539695G>A	uc003xsd.1	+	4	3401	c.3253G>A	c.(3253-3255)GTC>ATC	p.V1085I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1085					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding	p.V1085V(1)		skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCTCTTACCAGTCCTGATGCT	0.428													16	29					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542620	55542620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:55542620G>A	uc003xsd.1	+	4	6326	c.6178G>A	c.(6178-6180)GAA>AAA	p.E2060K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2060					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCAGACAAATGAAATCTTTAA	0.348													9	22					0	0	1	0	0
MOS	4342	broad.mit.edu	37	8	57026502	57026502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:57026502C>T	uc011leb.1	-	1	40	c.40G>A	c.(40-42)GAG>AAG	p.E14K		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	14							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			GGGGAAAACTCGCTCCGGAGG	0.682													17	25					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57224838	57224838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:57224838C>T	uc003xsy.1	-	3	981	c.343G>A	c.(343-345)GAA>AAA	p.E115K	SDR16C5_uc010lyk.1_Missense_Mutation_p.E115K|SDR16C5_uc010lyl.1_Intron	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	115					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TCGCCGACTTCTTTTTTAACC	0.373													16	38					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354437	57354437	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:57354437C>T	uc003xsz.2	-	2	279	c.198G>A	c.(196-198)AAG>AAA	p.K66K	PENK_uc003xta.3_Silent_p.K66K	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	66					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			GCAGGAGCTCCTTGCAGGTTT	0.448													65	88					0	0	1	0	0
IMPAD1	54928	broad.mit.edu	37	8	57878906	57878906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:57878906C>T	uc003xte.3	-	4	935	c.652G>A	c.(652-654)GCA>ACA	p.A218T		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	218						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				TCTACCATTGCCCAAGCTGAA	0.408													11	70					0	0	1	0	0
IMPAD1	54928	broad.mit.edu	37	8	57890618	57890618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:57890618C>T	uc003xte.3	-	3	920	c.637G>A	c.(637-639)GAA>AAA	p.E213K		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	213						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				CCTGTATATTCGGAAAATGGC	0.338													18	94					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61778215	61778215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:61778215C>T	uc003xue.2	+	38	9194	c.8717C>T	c.(8716-8718)TCC>TTC	p.S2906F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2906					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TTCTACCCATCCATGTTTCTA	0.592													22	63					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62212777	62212777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:62212777G>A	uc003xuh.2	+	2	715	c.391G>A	c.(391-393)GAA>AAA	p.E131K	CLVS1_uc003xug.2_Missense_Mutation_p.E131K|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.E131K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	131	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CGGGGTGCTGGAAAACCGAGA	0.463													9	34					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62289243	62289243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:62289243G>A	uc003xuh.2	+	3	859	c.535G>A	c.(535-537)GGC>AGC	p.G179S	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.G179S	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	179	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TCAGATAAATGGCTTCATTTT	0.443													27	43					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67803281	67803281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:67803281G>A	uc003xwz.3	+	10	1426	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	C8orf45_uc011lev.1_Missense_Mutation_p.D419N|C8orf45_uc011lew.1_Missense_Mutation_p.D350N|C8orf45_uc011lex.1_Missense_Mutation_p.D177N|C8orf45_uc003xwy.3_Missense_Mutation_p.D419N	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	419					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ACACAAAAAAGATAAACTTGA	0.358													27	11					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67808488	67808488	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:67808488C>T	uc003xwz.3	+	11	1534	c.1363C>T	c.(1363-1365)CAG>TAG	p.Q455*	C8orf45_uc011lev.1_Nonsense_Mutation_p.Q455*|C8orf45_uc011lew.1_Nonsense_Mutation_p.Q386*|C8orf45_uc011lex.1_Nonsense_Mutation_p.Q213*|C8orf45_uc003xwy.3_Nonsense_Mutation_p.Q455*	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	455					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTTTCCAGTTCAGTGCAGTTT	0.388													33	38					0	0	1	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68169972	68169972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:68169972G>A	uc003xxo.1	-	17	2911	c.2521C>T	c.(2521-2523)CCA>TCA	p.P841S	ARFGEF1_uc003xxl.1_Missense_Mutation_p.P295S	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	841					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			CATACCTGTGGACTGTGAAGG	0.308													83	33					0	0	1	0	0
CPA6	57094	broad.mit.edu	37	8	68421820	68421820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:68421820G>A	uc003xxq.3	-	5	722	c.466C>T	c.(466-468)CAC>TAC	p.H156Y	CPA6_uc003xxr.3_Missense_Mutation_p.H8Y|CPA6_uc003xxs.2_Missense_Mutation_p.H156Y	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	156					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			AGGCCTGAGTGAGTTTTATTC	0.303													36	25					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68984743	68984743	+	Missense_Mutation	SNP	C	T	T	rs150518974		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:68984743C>T	uc003xxv.1	+	14	1534	c.1507C>T	c.(1507-1509)CAT>TAT	p.H503Y	PREX2_uc003xxu.1_Missense_Mutation_p.H503Y|PREX2_uc011lez.1_Missense_Mutation_p.H438Y	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	503	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TAAAGATTACCATTTAAGGAC	0.313													40	24					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69002929	69002929	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:69002929G>A	uc003xxv.1	+	20	2256	c.2229G>A	c.(2227-2229)AGG>AGA	p.R743R	PREX2_uc003xxu.1_Silent_p.R743R|PREX2_uc011lez.1_Silent_p.R678R	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	743	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAGCCTGCAGGAAGTACAGGC	0.498													16	49					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69021713	69021713	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:69021713C>T	uc003xxv.1	+	25	3028	c.3001C>T	c.(3001-3003)CTG>TTG	p.L1001L	PREX2_uc011lez.1_Silent_p.L936L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1001					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CCCTTCAGGTCTGTCTCTGGG	0.463													17	40					0	0	1	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70744759	70744759	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:70744759G>A	uc003xyl.2	-	2	857	c.150C>T	c.(148-150)CTC>CTT	p.L50L	SLCO5A1_uc010lzb.2_Silent_p.L50L|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.L50L|SLCO5A1_uc010lzc.2_Silent_p.L50L	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	50	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TAGTGGGACTGAGGCTTGGCC	0.642											OREG0018815	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	41					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72211932	72211932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:72211932C>T	uc003xys.3	-	7	867	c.580G>A	c.(580-582)GGA>AGA	p.G194R	EYA1_uc003xyr.3_Missense_Mutation_p.G189R|EYA1_uc003xyt.3_Missense_Mutation_p.G161R|EYA1_uc010lzf.2_Missense_Mutation_p.G121R|EYA1_uc003xyu.2_Missense_Mutation_p.G194R|EYA1_uc011lfe.1_Missense_Mutation_p.G188R|EYA1_uc003xyv.2_Missense_Mutation_p.G72R	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	194					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GTATATATTCCTGATGATGTT	0.303													17	69					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73850012	73850012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:73850012G>A	uc003xzb.2	+	3	3010	c.2422G>A	c.(2422-2424)GAT>AAT	p.D808N		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	808	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CACTGAAATAGATACTGGTGA	0.527													9	47					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75227701	75227701	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:75227701G>A	uc003yae.2	-	2	574	c.534C>T	c.(532-534)GAC>GAT	p.D178D	JPH1_uc003yaf.2_Silent_p.D178D|JPH1_uc003yag.1_Silent_p.D42D	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	178	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CGGCTGCGGCGTCGTGGAGCA	0.701													9	12					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765125	77765125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:77765125G>A	uc003yav.2	+	10	6220	c.5833G>A	c.(5833-5835)GAC>AAC	p.D1945N	ZFHX4_uc003yau.1_Missense_Mutation_p.D1990N|ZFHX4_uc003yaw.1_Missense_Mutation_p.D1945N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1945						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGAGGCCTATGACAAGCTTTA	0.284										HNSCC(33;0.089)			7	17					0	0	1	0	0
PEX2	5828	broad.mit.edu	37	8	77896146	77896146	+	Missense_Mutation	SNP	G	A	A	rs146354196	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:77896146G>A	uc003yax.2	-	4	727	c.269C>T	c.(268-270)TCC>TTC	p.S90F	PEX2_uc003yay.2_Missense_Mutation_p.S90F|PEX2_uc003yaz.2_Missense_Mutation_p.S90F	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	90					peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						CAGGTTAGGGGAAAAATCATT	0.388													7	22					0	0	1	0	0
ZBTB10	65986	broad.mit.edu	37	8	81412130	81412130	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:81412130C>T	uc003ybx.3	+	2	1972	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	ZBTB10_uc003ybv.3_Silent_p.F166F|ZBTB10_uc003ybw.3_Silent_p.F458F|ZBTB10_uc010lzt.2_Silent_p.F458F	NM_001105539	NP_001099009	Q96DT7	ZBT10_HUMAN	zinc finger and BTB domain containing 10 isoform	458					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)	1	all_cancers(3;1.68e-09)|all_epithelial(4;5.13e-11)|Lung NSC(7;1.75e-07)|all_lung(9;7.38e-07)|Breast(3;2.96e-06)		BRCA - Breast invasive adenocarcinoma(6;0.000434)|Epithelial(68;0.00486)|all cancers(69;0.0296)			GCCGAAATTTCATTAAAGATG	0.373													23	42					0	0	1	0	0
RALYL	138046	broad.mit.edu	37	8	85441753	85441753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:85441753G>A	uc003ycq.3	+	3	613	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	RALYL_uc003ycr.3_Missense_Mutation_p.R66Q|RALYL_uc003ycs.3_Missense_Mutation_p.R66Q|RALYL_uc010lzy.2_Missense_Mutation_p.R66Q|RALYL_uc003yct.3_Missense_Mutation_p.R79Q	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	66	RRM.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						ATGAGTGAGCGACATGCAAGA	0.428													14	23					0	0	1	0	0
E2F5	1875	broad.mit.edu	37	8	86115413	86115413	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:86115413G>A	uc003ycz.3	+	3	466	c.429G>A	c.(427-429)AAG>AAA	p.K143K	E2F5_uc003yda.3_Silent_p.K143K|E2F5_uc010mab.2_5'UTR|E2F5_uc003ydb.3_5'Flank	NM_001951	NP_001942	Q15329	E2F5_HUMAN	E2F transcription factor 5 isoform 1	143	Dimerization (Potential).				G1 phase of mitotic cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1						TAGAACTGAAGGAAAGAGAAC	0.333													23	5					0	0	1	0	0
CA1	759	broad.mit.edu	37	8	86253848	86253848	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:86253848C>T	uc003ydh.2	-	3	217	c.17G>A	c.(16-18)TGG>TAG	p.W6*	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Nonsense_Mutation_p.W6*|CA1_uc003ydi.2_Nonsense_Mutation_p.W6*	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	6					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	ATCATATCCCCAGTCTGGACT	0.328													9	41					0	0	1	0	0
CA2	760	broad.mit.edu	37	8	86389397	86389397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:86389397G>A	uc003ydk.2	+	6	736	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	186					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CCTCCTTCCTGAATCCTTGGA	0.512													106	69					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	86567377	86567377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:86567377C>T	uc003ydl.1	-	1	529	c.442G>A	c.(442-444)GAC>AAC	p.D148N		NM_172239	NP_758439			exonuclease GOR																		ATCTCACAGTCCAAGGCGTAG	0.602													8	98					0	0	1	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87151852	87151852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:87151852G>A	uc003ydp.1	+	3	538	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	157					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						CATTCTGATCGAAACGCCATT	0.418													44	23					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87591016	87591016	+	Silent	SNP	C	T	T	rs142347723		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:87591016C>T	uc003ydx.2	-	17	2050	c.2004G>A	c.(2002-2004)CCG>CCA	p.P668P	CNGB3_uc010maj.2_Silent_p.P525P	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	668	Cytoplasmic (Potential).|cGMP (By similarity).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCTCTTCTTTCGGTGGGAAGA	0.473													39	65					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87655989	87655989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:87655989C>T	uc003ydx.2	-	10	1214	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K	CNGB3_uc010maj.2_Missense_Mutation_p.E252K	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	390	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCGTTTCCTTCCCCATCATAC	0.348													13	39					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885876	88885876	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:88885876C>T	uc003ydz.2	-	1	421	c.324G>A	c.(322-324)ACG>ACA	p.T108T		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	108										ovary(1)	1						GCTCAGGGGTCGTCAGGCCTC	0.547													34	71					0	0	1	0	0
NECAB1	64168	broad.mit.edu	37	8	91937813	91937813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:91937813G>A	uc011lgg.1	+	7	739	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_022351	NP_071746	Q8N987	NECA1_HUMAN	N-terminal EF-hand calcium binding protein 1	182					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity			central_nervous_system(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.0499)			CCTGGAAAACGATCAAGCCGC	0.463													9	7					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	92988151	92988151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:92988151C>T	uc003yfd.2	-	9	1414	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K	RUNX1T1_uc003yfc.1_Missense_Mutation_p.E417K|RUNX1T1_uc003yfe.1_Missense_Mutation_p.E407K|RUNX1T1_uc010mao.2_Missense_Mutation_p.E417K|RUNX1T1_uc011lgi.1_Missense_Mutation_p.E455K|RUNX1T1_uc010man.1_Missense_Mutation_p.E69K|RUNX1T1_uc003yfb.1_Missense_Mutation_p.E407K	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	444					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCCAGATCTCCTCTGGCACG	0.478													39	112					0	0	1	0	0
PDP1	54704	broad.mit.edu	37	8	94934858	94934858	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:94934858C>T	uc003yge.2	+	2	840	c.571C>T	c.(571-573)CAG>TAG	p.Q191*	PDP1_uc003ygf.2_Nonsense_Mutation_p.Q216*|PDP1_uc010max.2_Nonsense_Mutation_p.Q216*|PDP1_uc011lgm.1_Nonsense_Mutation_p.Q191*|PDP1_uc011lgn.1_Nonsense_Mutation_p.Q250*	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	191					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						ACCCATTCTCCAGTGGCACAA	0.443													39	17					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95186195	95186195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:95186195G>A	uc003ygh.2	-	7	738	c.613C>T	c.(613-615)CCT>TCT	p.P205S	CDH17_uc011lgo.1_Intron|CDH17_uc011lgp.1_Missense_Mutation_p.P205S	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	205	Extracellular (Potential).|Cadherin 2.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TTATAGGAAGGATTCTTAGCA	0.438													11	43					0	0	1	0	0
GEM	2669	broad.mit.edu	37	8	95272458	95272458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:95272458C>T	uc003ygj.2	-	2	523	c.274G>A	c.(274-276)GCC>ACC	p.A92T	GEM_uc003ygi.2_Missense_Mutation_p.A92T	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	92					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			AAGATGTTGGCCAGAGTGGAC	0.597													19	29					0	0	1	0	0
RAD54B	25788	broad.mit.edu	37	8	95384481	95384481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:95384481G>A	uc003ygk.2	-	15	2748	c.2650C>T	c.(2650-2652)CTT>TTT	p.L884F		NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			GGATCTGTAAGATTTAAATGA	0.363								Direct_reversal_of_damage|Homologous_recombination					12	24					0	0	1	0	0
RAD54B	25788	broad.mit.edu	37	8	95390826	95390826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:95390826G>A	uc003ygk.2	-	13	2382	c.2284C>T	c.(2284-2286)CCT>TCT	p.P762S	RAD54B_uc010may.1_Missense_Mutation_p.P569S	NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			ATATGTACAGGATATTTCTGA	0.353								Direct_reversal_of_damage|Homologous_recombination					8	26					0	0	1	0	0
KIAA1429	25962	broad.mit.edu	37	8	95524276	95524276	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:95524276G>A	uc003ygo.1	-	12	2806	c.2793C>T	c.(2791-2793)ACC>ACT	p.T931T	KIAA1429_uc003ygp.2_Silent_p.T931T|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	931					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			GTAAGGCAGTGGTAAGGCCAA	0.383													18	20					0	0	1	0	0
OSR2	116039	broad.mit.edu	37	8	99961429	99961429	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:99961429C>T	uc003yir.2	+	2	784	c.249C>T	c.(247-249)TTC>TTT	p.F83F	OSR2_uc010mbn.2_Silent_p.F83F|OSR2_uc003yiq.2_Silent_p.F83F|OSR2_uc011lgx.1_Silent_p.F204F	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a	83					bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding			central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			ACGCGCGCTTCCCCTTCCCGG	0.657													62	33					0	0	1	0	0
NACAP1	83955	broad.mit.edu	37	8	102381223	102381223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:102381223C>T	uc003ykc.1	+	1	103	c.86C>T	c.(85-87)TCT>TTT	p.S29F	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						GGAACAGAATCTGACAGTGAT	0.527													10	33					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104987692	104987692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:104987692G>A	uc003yls.2	+	14	2460	c.2219G>A	c.(2218-2220)GGA>GAA	p.G740E	RIMS2_uc003ylp.2_Missense_Mutation_p.G962E|RIMS2_uc003ylw.2_Missense_Mutation_p.G754E|RIMS2_uc003ylq.2_Missense_Mutation_p.G754E|RIMS2_uc003ylr.2_Missense_Mutation_p.G801E|RIMS2_uc003ylt.2_Missense_Mutation_p.G347E	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1024					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GATGTTATAGGAAGGACTAGA	0.388										HNSCC(12;0.0054)			23	6					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105161027	105161027	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:105161027C>T	uc003yls.2	+	23	3580	c.3339C>T	c.(3337-3339)ATC>ATT	p.I1113I	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Silent_p.I1102I|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	541					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGGTAGCTATCGTTGGTCTGT	0.483										HNSCC(12;0.0054)			19	57					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367281	105367281	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:105367281C>T	uc003ylx.1	+	3	1255	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	402	Cytoplasmic.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AACTTAAAATCCTGGTGTCAG	0.443													67	35					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813294	106813294	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:106813294C>T	uc003ymd.2	+	8	1007	c.984C>T	c.(982-984)TTC>TTT	p.F328F	ZFPM2_uc011lhs.1_Silent_p.F59F|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	328					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TGGAAGAATTCCTGCCCCCTG	0.428													74	46					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814320	106814320	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:106814320G>A	uc003ymd.2	+	8	2033	c.2010G>A	c.(2008-2010)GTG>GTA	p.V670V	ZFPM2_uc011lhs.1_Silent_p.V401V	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	670					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTGTTGATGTGAAAAATCCCA	0.443													7	20					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814408	106814408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:106814408G>A	uc003ymd.2	+	8	2121	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K	ZFPM2_uc011lhs.1_Missense_Mutation_p.E431K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	700	C2HC-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CAGCCGGCACGAAACATACAT	0.488													15	12					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815544	106815544	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:106815544G>A	uc003ymd.2	+	8	3257	c.3234G>A	c.(3232-3234)TGG>TGA	p.W1078*	ZFPM2_uc011lhs.1_Nonsense_Mutation_p.W809*	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1078					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTCCCTCGTGGATCTCTGAGA	0.483													19	25					0	0	1	0	0
ABRA	137735	broad.mit.edu	37	8	107782406	107782406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:107782406C>T	uc003ymm.3	-	1	67	c.13G>A	c.(13-15)GAA>AAA	p.E5K		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	5					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			CTTTCCTTTTCGCCCGGAGCC	0.592													25	43					0	0	1	0	0
TMEM74	157753	broad.mit.edu	37	8	109796959	109796959	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:109796959C>T	uc003ymy.1	-	2	474	c.369G>A	c.(367-369)CGG>CGA	p.R123R	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	123					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			AGCTCCGGTTCCGCTGCTCCA	0.473													23	57					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110437383	110437383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:110437383C>T	uc003yne.2	+	24	2871	c.2767C>T	c.(2767-2769)CAT>TAT	p.H923Y		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	923	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTCAAAAATTCATATTCAAAG	0.318										HNSCC(38;0.096)			7	13					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457590	110457590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:110457590C>T	uc003yne.2	+	38	5596	c.5492C>T	c.(5491-5493)CCC>CTC	p.P1831L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1831	Extracellular (Potential).|IPT/TIG 11.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTCAGCAGCCCCCCAGTAGCA	0.498										HNSCC(38;0.096)			26	14					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113277642	113277642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:113277642C>T	uc003ynu.2	-	60	9845	c.9686G>A	c.(9685-9687)AGA>AAA	p.R3229K	CSMD3_uc003yns.2_Missense_Mutation_p.R2431K|CSMD3_uc003ynt.2_Missense_Mutation_p.R3189K|CSMD3_uc011lhx.1_Missense_Mutation_p.R3060K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3229	Extracellular (Potential).|Sushi 24.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TATCATACCTCTACAAGTTGG	0.294										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			29	53					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113569031	113569031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:113569031C>T	uc003ynu.2	-	25	4354	c.4195G>A	c.(4195-4197)GAG>AAG	p.E1399K	CSMD3_uc003yns.2_Missense_Mutation_p.E671K|CSMD3_uc003ynt.2_Missense_Mutation_p.E1359K|CSMD3_uc011lhx.1_Missense_Mutation_p.E1295K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1399	Extracellular (Potential).|Sushi 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCCCTTCTCTCCCCTGTCATG	0.443										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	54					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113694737	113694737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:113694737C>T	uc003ynu.2	-	16	2770	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	CSMD3_uc003yns.2_Missense_Mutation_p.E143K|CSMD3_uc003ynt.2_Missense_Mutation_p.E831K|CSMD3_uc011lhx.1_Missense_Mutation_p.E767K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	871	Sushi 4.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTAATTGTTTCTGTTCCCTGG	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	65					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114186110	114186110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:114186110G>A	uc003ynu.2	-	4	709	c.550C>T	c.(550-552)CCA>TCA	p.P184S	CSMD3_uc003ynt.2_Missense_Mutation_p.P144S|CSMD3_uc011lhx.1_Missense_Mutation_p.P184S|CSMD3_uc010mcx.1_Missense_Mutation_p.P184S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	184	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCTTTGGGTGGAACACCAGGA	0.423										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			50	23					0	0	1	0	0
TRPS1	7227	broad.mit.edu	37	8	116426373	116426373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:116426373G>A	uc003ynz.2	-	6	4183	c.3724C>T	c.(3724-3726)CCT>TCT	p.P1242S	TRPS1_uc011lhy.1_Missense_Mutation_p.P1246S|TRPS1_uc003yny.2_Missense_Mutation_p.P1255S|TRPS1_uc010mcy.2_Missense_Mutation_p.P1242S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	1242	Transcriptional repressor domain (By similarity).				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CACTGGAAAGGTCCACTGTCA	0.438									Langer-Giedion_syndrome				25	57					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118184905	118184905	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:118184905A>G	uc003yoh.2	+	8	1325	c.1095A>G	c.(1093-1095)GAA>GAG	p.E365E	SLC30A8_uc010mcz.2_Silent_p.E316E|SLC30A8_uc011lia.1_Silent_p.E316E|SLC30A8_uc003yog.2_Silent_p.E316E	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	365	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TTTTCTGTGAAGACCCCTGTG	0.463													58	209					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121209083	121209083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:121209083G>A	uc003yox.2	+	6	755	c.490G>A	c.(490-492)GAT>AAT	p.D164N	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	164	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATCCTGGTCGATGGTTCATG	0.438													19	68					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121256123	121256123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:121256123G>A	uc003yox.2	+	20	2620	c.2355G>A	c.(2353-2355)ATG>ATA	p.M785I	COL14A1_uc003yoy.2_Missense_Mutation_p.M463I	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	785	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TTCAGGTTATGGTGCCTGGAA	0.438													61	180					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121381701	121381701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:121381701C>T	uc003yox.2	+	47	5553	c.5288C>T	c.(5287-5289)TCA>TTA	p.S1763L	COL14A1_uc003yoz.2_Missense_Mutation_p.S728L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1763	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GACCCCTCATCATGTTCTGCC	0.532													58	35					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123965046	123965046	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:123965046G>A	uc003ypk.1	+	3	1863	c.1296G>A	c.(1294-1296)AAG>AAA	p.K432K		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	432	Required for interaction with NFYA.|Required for repressor activity.|Required for nuclear localization.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CCCCACCCAAGGTGGCCAACC	0.612													6	18					0	0	1	0	0
FAM83A	84985	broad.mit.edu	37	8	124195299	124195299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:124195299C>T	uc003ypv.2	+	2	2217	c.203C>T	c.(202-204)GCC>GTC	p.A68V	FAM83A_uc003ypw.2_Missense_Mutation_p.A68V|FAM83A_uc003ypy.2_Missense_Mutation_p.A68V|FAM83A_uc003ypx.2_Missense_Mutation_p.A68V|FAM83A_uc003ypz.2_Missense_Mutation_p.A68V	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	68										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TCGGTGGAGGCCCAGTACATC	0.682													24	17					0	0	1	0	0
FAM83A	84985	broad.mit.edu	37	8	124219548	124219548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:124219548C>T	uc003ypv.2	+	5	2939	c.925C>T	c.(925-927)CCG>TCG	p.P309S	FAM83A_uc003ypw.2_Missense_Mutation_p.P309S|FAM83A_uc003ypy.2_Missense_Mutation_p.P253S|FAM83A_uc003ypx.2_Missense_Mutation_p.P309S|FAM83A_uc003ypz.2_Missense_Mutation_p.P309S	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	309										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CGCCCCCGTCCCGCCCGGAGC	0.706													5	10					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126051155	126051155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:126051155G>A	uc003yrt.2	-	25	3330	c.3001C>T	c.(3001-3003)CCT>TCT	p.P1001S	KIAA0196_uc011lir.1_Missense_Mutation_p.P853S|KIAA0196_uc003yru.1_Missense_Mutation_p.P575S	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	1001					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TTGGGGTAAGGAAGTGAAGGG	0.393													29	73					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131812690	131812690	+	Silent	SNP	G	A	A	rs142352284		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:131812690G>A	uc003ytd.3	-	15	3298	c.3042C>T	c.(3040-3042)ATC>ATT	p.I1014I	ADCY8_uc010mds.2_Silent_p.I883I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1014	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGTCAGCAATGATCTCATTGA	0.428										HNSCC(32;0.087)			28	69					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133192488	133192488	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:133192488G>A	uc003ytj.2	-	4	918	c.693C>T	c.(691-693)TTC>TTT	p.F231F	KCNQ3_uc010mdt.2_Silent_p.F231F	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	231	Helical; Voltage-sensor; Name=Segment S4; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGATCTGCAGGAAGCGCAGGC	0.587													30	65					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133492516	133492516	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:133492516C>T	uc003ytj.2	-	1	489	c.264G>A	c.(262-264)CTG>CTA	p.L88L	KCNQ3_uc010mdt.2_Silent_p.L88L	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	88					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGGTCTTGGCCAGGAGCCCGA	0.701													8	13					0	0	1	0	0
LRRC6	23639	broad.mit.edu	37	8	133650239	133650240	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:133650239_133650240GG>AA	uc003ytk.2	-	4	444_445	c.370_371CC>TT	c.(370-372)CCA>TTA	p.P124L	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	124	LRRCT.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGAAGCACATGGGTTCCCCATG	0.426													32	11					0	0	1	0	0
PHF20L1	51105	broad.mit.edu	37	8	133829221	133829221	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:133829221T>C	uc003ytt.2	+	11	1597	c.1272T>C	c.(1270-1272)CCT>CCC	p.P424P	PHF20L1_uc003yts.2_Silent_p.P424P|PHF20L1_uc011lja.1_Silent_p.P398P|PHF20L1_uc003ytu.1_Intron	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	424							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TACCCATGCCTGATGATTCTG	0.463													24	40					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133941393	133941393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:133941393C>T	uc003ytw.2	+	23	4813	c.4772C>T	c.(4771-4773)TCC>TTC	p.S1591F	TG_uc010mdw.2_Missense_Mutation_p.S350F|TG_uc011ljb.1_Missense_Mutation_p.S24F|TG_uc003ytx.1_RNA	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1591					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GCTGTCAGATCCAAAGTTCCT	0.453													20	40					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139144955	139144955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:139144955G>A	uc003yuy.2	-	20	4273	c.4102C>T	c.(4102-4104)CAC>TAC	p.H1368Y	FAM135B_uc003yux.2_Missense_Mutation_p.H1269Y|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1368										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGCAGGGCGTGGAACACGTTG	0.542										HNSCC(54;0.14)			90	152					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164716	139164716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:139164716C>T	uc003yuy.2	-	13	2173	c.2002G>A	c.(2002-2004)GAA>AAA	p.E668K	FAM135B_uc003yux.2_Missense_Mutation_p.E569K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E230K|FAM135B_uc003yvb.2_Missense_Mutation_p.E230K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	668										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACTGAGAGTTCCTCCTGCTCT	0.527										HNSCC(54;0.14)			20	69					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164857	139164857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:139164857C>T	uc003yuy.2	-	13	2032	c.1861G>A	c.(1861-1863)GGA>AGA	p.G621R	FAM135B_uc003yux.2_Missense_Mutation_p.G522R|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G183R|FAM135B_uc003yvb.2_Missense_Mutation_p.G183R	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	621										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGATCTATTCCCTTTCCTAGA	0.473										HNSCC(54;0.14)			27	62					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142228239	142228239	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:142228239G>A	uc003ywd.1	-	4	1655	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S	SLC45A4_uc003ywc.1_Silent_p.S449S|SLC45A4_uc010meq.1_Silent_p.S447S	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	500					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TCTTCAGCATGGAGAGCCACA	0.662													6	31					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142490449	142490449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:142490449G>A	uc003ywi.2	-	7	931	c.850C>T	c.(850-852)CCT>TCT	p.P284S	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	284							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ACCTTCTCAGGGGACTGCTCC	0.637													8	8					0	0	1	0	0
GML	2765	broad.mit.edu	37	8	143927900	143927901	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:143927900_143927901GG>AA	uc003yxg.2	+	4	361_362	c.271_272GG>AA	c.(271-273)GGA>AAA	p.G91K		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	91	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TGAAGCCCCAGGAAAAATCTTC	0.386													7	32					0	0	1	0	0
ZFP41	286128	broad.mit.edu	37	8	144332511	144332511	+	Silent	SNP	C	T	T	rs139798965	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144332511C>T	uc003yxw.2	+	2	856	c.498C>T	c.(496-498)ACC>ACT	p.T166T	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	166					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AGACGCACACCGGGGAGAAGC	0.572													40	64					0	0	1	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621080	144621080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144621080G>A	uc003yyd.2	-	2	486	c.457C>T	c.(457-459)CCC>TCC	p.P153S		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	153					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			TCACTCCAGGGGGTTTCCTCA	0.612													15	35					0	0	1	0	0
NAPRT1	93100	broad.mit.edu	37	8	144658649	144658649	+	Silent	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144658649T>C	uc003yym.3	-	7	1000	c.975A>G	c.(973-975)CTA>CTG	p.L325L	NAPRT1_uc003yyn.3_Silent_p.L325L|NAPRT1_uc011lkh.1_Silent_p.L325L|NAPRT1_uc003yyo.3_Silent_p.L325L	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	325					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GAGCCTGCTGTAGCAGGTCAC	0.652													9	25					0	0	1	0	0
ZNF623	9831	broad.mit.edu	37	8	144733406	144733406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144733406G>A	uc003yzd.2	+	1	1453	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	ZNF623_uc011lkp.1_Missense_Mutation_p.G415E|ZNF623_uc003yzc.2_Missense_Mutation_p.G415E	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	455					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			ATTCACACTGGAGAAAAGCCC	0.453													20	52					0	0	1	0	0
ZNF623	9831	broad.mit.edu	37	8	144733464	144733464	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144733464C>T	uc003yzd.2	+	1	1511	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	ZNF623_uc011lkp.1_Silent_p.F434F|ZNF623_uc003yzc.2_Silent_p.F434F	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	474	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGTCAAACTTCCTTCAACACC	0.398													16	48					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940278	144940278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144940278C>T	uc003zaa.1	-	2	15167	c.15154G>A	c.(15154-15156)GAC>AAC	p.D5052N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5052	Plectin 65.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCTTGGTGTCGTCGCTGGGG	0.657													13	376					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940528	144940528	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144940528C>T	uc003zaa.1	-	2	14917	c.14904G>A	c.(14902-14904)GAG>GAA	p.E4968E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4968	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACAGCAGCTTCTCCTGGATCT	0.701													5	146					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144941023	144941023	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144941023C>T	uc003zaa.1	-	1	6412	c.6399G>A	c.(6397-6399)GAG>GAA	p.E2133E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2133						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTTCTTCTCCTCTGTCACGT	0.527													38	150					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144941995	144941995	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144941995C>T	uc003zaa.1	-	1	5440	c.5427G>A	c.(5425-5427)AGG>AGA	p.R1809R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1809						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCCCGCTTCCTGTCCTCTG	0.527													43	57					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144942577	144942577	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144942577G>A	uc003zaa.1	-	1	4858	c.4845C>T	c.(4843-4845)ATC>ATT	p.I1615I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1615	Plectin 27.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCACGGGGTCGATGATGAAGC	0.632													28	12					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144946528	144946528	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:144946528C>T	uc003zaa.1	-	1	907	c.894G>A	c.(892-894)AAG>AAA	p.K298K		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	298	Plectin 6.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AAAAGCTCTTCTTGTGGCCTT	0.687													19	75					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145095470	145095470	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:145095470C>T	uc011lkw.1	+	3	870	c.768C>T	c.(766-768)GTC>GTT	p.V256V	SPATC1_uc011lkx.1_Silent_p.V256V	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	256										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CATCACTAGTCCCACTCTCCA	0.617													6	38					0	0	1	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145722799	145722799	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:145722799C>T	uc003zdd.2	+	2	1135	c.222C>T	c.(220-222)GTC>GTT	p.V74V	uc003zde.1_Silent_p.R105R|PPP1R16A_uc003zdf.2_Silent_p.V74V	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	74	ANK 1.					plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CCAGTGTTGTCCTTCTGGAGG	0.652													9	24					0	0	1	0	0
TMED10P1	286102	broad.mit.edu	37	8	146220446	146220446	+	Missense_Mutation	SNP	G	A	A	rs4489360	by1000genomes	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:146220446G>A	uc003zey.2	+	1	196	c.175G>A	c.(175-177)GAG>AAG	p.E59K	ZNF252_uc003zew.3_Intron|ZNF252_uc011llo.1_Intron	NR_002807				Homo sapiens mRNA for Tmp21-II putative transcribed pseudogene.												0						TGGCACATACGAGATCTCTGA	0.502													4	8					0	0	1	0	0
DMRT2	10655	broad.mit.edu	37	9	1057090	1057090	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:1057090G>A	uc003zha.2	+	4	1703	c.1503G>A	c.(1501-1503)AAG>AAA	p.K501K	DMRT2_uc003zgx.3_Silent_p.K268K|DMRT2_uc010mgz.2_Silent_p.K268K|DMRT2_uc003zgy.3_Silent_p.K345K|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Silent_p.K501K	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	501					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		AGACCCCTAAGAAACACAGAG	0.383													37	3					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2076235	2076235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:2076235G>A	uc003zhc.2	+	13	2041	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	SMARCA2_uc003zhd.2_Missense_Mutation_p.E648K|SMARCA2_uc010mha.2_Missense_Mutation_p.E639K	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	648	Poly-Glu.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CCAGGATGAGGAAGAAGAGTC	0.368													13	20					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	3937095	3937095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:3937095G>A	uc003zhw.1	-	4	1534	c.1340C>T	c.(1339-1341)CCG>CTG	p.P447L	GLIS3_uc003zhx.1_Missense_Mutation_p.P602L|GLIS3_uc010mhf.1_5'UTR|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.P380L|GLIS3_uc003zhz.1_Missense_Mutation_p.P380L	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	447	C2H2-type 4.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CTGACAACCCGGATGCTGGCA	0.532													50	9					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	4285999	4285999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:4285999C>T	uc003zii.1	-	2	1140	c.427G>A	c.(427-429)GAT>AAT	p.D143N	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGAAAAAAATCGTTTCCATTT	0.393													13	30					0	0	1	0	0
PDCD1LG2	80380	broad.mit.edu	37	9	5557717	5557717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:5557717G>A	uc003zjg.3	+	5	1004	c.731G>A	c.(730-732)AGA>AAA	p.R244K	C9orf46_uc003zjd.2_Intron|PDCD1LG2_uc011lmc.1_Missense_Mutation_p.R244K|PDCD1LG2_uc011lmd.1_Silent_p.K242K|PDCD1LG2_uc010mhp.1_Silent_p.K152K|PDCD1LG2_uc010mho.1_Missense_Mutation_p.R154K	NM_025239	NP_079515	Q9BQ51	PD1L2_HUMAN	programmed cell death 1 ligand 2 precursor	244	Cytoplasmic (Potential).				immune response|T cell costimulation	endomembrane system|extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000767)|Lung(218;0.112)		ATAGCCCTAAGAAAACAACTC	0.448													24	37					0	0	1	0	0
KIAA2026	158358	broad.mit.edu	37	9	5920789	5920789	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:5920789A>G	uc003zjq.3	-	8	5423	c.5207T>C	c.(5206-5208)TTA>TCA	p.L1736S	KIAA2026_uc010mht.2_Missense_Mutation_p.L911S	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1736										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AGCTGATGTTAAACATTTAGG	0.423													65	10					0	0	1	0	0
RANBP6	26953	broad.mit.edu	37	9	6015474	6015474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:6015474G>A	uc003zjr.2	-	1	145	c.134C>T	c.(133-135)CCA>CTA	p.P45L	RANBP6_uc011lmf.1_Missense_Mutation_p.P45L|RANBP6_uc003zjs.2_Nonsense_Mutation_p.Q5*	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	45					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		ACACAGACCTGGGATATTTTC	0.468													24	38					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8471043	8471043	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:8471043C>T	uc003zkk.2	-	30	4167	c.3456G>A	c.(3454-3456)GGG>GGA	p.G1152G	PTPRD_uc003zkp.2_Silent_p.G741G|PTPRD_uc003zkq.2_Silent_p.G741G|PTPRD_uc003zkr.2_Silent_p.G736G|PTPRD_uc003zks.2_Silent_p.G731G|PTPRD_uc003zkl.2_Silent_p.G1143G|PTPRD_uc003zkm.2_Silent_p.G1139G|PTPRD_uc003zkn.2_Silent_p.G741G|PTPRD_uc003zko.2_Silent_p.G738G	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1152	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGATAAATTTCCCGCGAGATT	0.368										TSP Lung(15;0.13)			18	28					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14746951	14746951	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:14746951G>A	uc003zlm.2	-	34	6698	c.6108C>T	c.(6106-6108)ATC>ATT	p.I2036I	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Silent_p.I572I	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2036					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTTCCAGGCGATCCCATTGC	0.488													6	12					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14823163	14823163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:14823163G>A	uc003zlm.2	-	13	2922	c.2332C>T	c.(2332-2334)CCT>TCT	p.P778S	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	778	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CATACCTCAGGAACTTGATTG	0.403													13	12					0	0	1	0	0
BNC2	54796	broad.mit.edu	37	9	16436260	16436260	+	Silent	SNP	C	T	T	rs144681255		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:16436260C>T	uc003zml.2	-	6	2072	c.1932G>A	c.(1930-1932)AAG>AAA	p.K644K	BNC2_uc011lmw.1_Silent_p.K549K|BNC2_uc003zmm.2_Silent_p.K602K|BNC2_uc003zmq.1_Silent_p.K658K|BNC2_uc003zmr.1_Silent_p.K681K|BNC2_uc003zmp.1_Silent_p.K672K|BNC2_uc010mij.1_Silent_p.K566K|BNC2_uc011lmv.1_Silent_p.K470K|BNC2_uc003zmo.1_Silent_p.K566K|BNC2_uc003zmj.2_Silent_p.K409K|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Silent_p.K409K|BNC2_uc003zmn.1_Silent_p.K409K	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	644					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		CAATAATTTCCTTCTCAATCT	0.488													27	30					0	0	1	0	0
PTPLAD2	401494	broad.mit.edu	37	9	21011630	21011630	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:21011630T>C	uc010miq.1	-	5	494	c.448A>G	c.(448-450)ACA>GCA	p.T150A	PTPLAD2_uc003zoj.1_Missense_Mutation_p.T113A|PTPLAD2_uc010mir.1_Missense_Mutation_p.T150A	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	150	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		ATCCATAGTGTTTGACTGAGC	0.378													14	7					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21217127	21217127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:21217127C>T	uc003zor.1	-	1	184	c.178G>A	c.(178-180)GGA>AGA	p.G60R	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	60					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TGGGGGAATCCGAAATCATAT	0.507													26	52					0	0	1	0	0
ELAVL2	1993	broad.mit.edu	37	9	23701585	23701585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:23701585C>T	uc003zpu.2	-	5	780	c.505G>A	c.(505-507)GGG>AGG	p.G169R	ELAVL2_uc003zps.2_Missense_Mutation_p.G169R|ELAVL2_uc003zpt.2_Missense_Mutation_p.G169R|ELAVL2_uc003zpv.2_Missense_Mutation_p.G169R|ELAVL2_uc003zpw.2_Missense_Mutation_p.G169R	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	169	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		CGAATAAACCCTACACCCCTT	0.433													19	45					0	0	1	0	0
C9orf82	79886	broad.mit.edu	37	9	26842533	26842533	+	Silent	SNP	G	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:26842533G>C	uc003zqc.2	-	6	864	c.852C>G	c.(850-852)GTC>GTG	p.V284V	C9orf82_uc003zqb.2_Silent_p.V139V	NM_024828	NP_079104	Q9H8G2	CI082_HUMAN	hypothetical protein LOC79886	284	Potential.										0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(42;1.39e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		CTTCACTTTGGACTGTATTTT	0.458													101	21					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27949635	27949635	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:27949635C>T	uc003zqu.1	-	2	1229	c.1035G>A	c.(1033-1035)AGG>AGA	p.R345R	LINGO2_uc010mjf.1_Silent_p.R345R|LINGO2_uc003zqv.1_Silent_p.R345R	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	345	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		CCTCCAGAGCCCTAGGGGAGG	0.562													23	5					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27950504	27950504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:27950504G>A	uc003zqu.1	-	2	360	c.166C>T	c.(166-168)CCC>TCC	p.P56S	LINGO2_uc010mjf.1_Missense_Mutation_p.P56S|LINGO2_uc003zqv.1_Missense_Mutation_p.P56S	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	56	LRRNT.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GTTTCGATGGGAATGCCCTCT	0.493													24	34					0	0	1	0	0
ACO1	48	broad.mit.edu	37	9	32407274	32407274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:32407274C>T	uc003zqw.3	+	3	268	c.113C>T	c.(112-114)TCG>TTG	p.S38L	ACO1_uc010mjh.1_5'UTR|ACO1_uc003zqx.3_Missense_Mutation_p.S38L|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	38					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		TTACCATTTTCGATCAGAGTT	0.383													27	7					0	0	1	0	0
NDUFB6	4712	broad.mit.edu	37	9	32572893	32572894	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:32572893_32572894GG>AT	uc003zre.1	-	1	289_290	c.165_166CC>AT	c.(163-168)TCCCCT>TCATCT	p.P56S	NDUFB6_uc003zrf.1_Missense_Mutation_p.P56S	NM_002493	NP_002484	O95139	NDUB6_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	56					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00199)	NADH(DB00157)	TTCCTCCAAGGGGATTTATTCT	0.579											OREG0019131	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	10					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32630579	32630579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:32630579C>T	uc003zrg.1	-	1	5089	c.4999G>A	c.(4999-5001)GAT>AAT	p.D1667N	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1667					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCATACATATCAGGAGGCTGA	0.463													39	49					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32633270	32633270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:32633270G>A	uc003zrg.1	-	1	2398	c.2308C>T	c.(2308-2310)CCA>TCA	p.P770S	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	770					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGATACACTGGAGCACGAAAA	0.423													16	24					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32633764	32633764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:32633764C>T	uc003zrg.1	-	1	1904	c.1814G>A	c.(1813-1815)GGG>GAG	p.G605E	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	605					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GATAATATTCCCTCCAAAGGT	0.493													37	29					0	0	1	0	0
KIAA1539	80256	broad.mit.edu	37	9	35105349	35105349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:35105349G>A	uc003zwl.2	-	9	1811	c.1486C>T	c.(1486-1488)CGC>TGC	p.R496C	STOML2_uc003zwh.2_5'Flank|STOML2_uc003zwi.2_5'Flank|STOML2_uc003zwj.2_5'Flank|STOML2_uc011lou.1_5'Flank|STOML2_uc003zwk.2_5'Flank|KIAA1539_uc003zwm.2_Missense_Mutation_p.R496C|KIAA1539_uc003zwn.2_Missense_Mutation_p.R191C|KIAA1539_uc003zwo.2_Missense_Mutation_p.R496C	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	496						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGGCTTAAGCGGCCTGAGCGG	0.478													21	3					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35800143	35800143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:35800143G>A	uc003zyd.2	+	4	1112	c.1112G>A	c.(1111-1113)CGA>CAA	p.R371Q	NPR2_uc010mlb.2_Missense_Mutation_p.R371Q	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	371	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	ATGCAGGGACGAAGATATCAC	0.493													38	46					0	0	1	0	0
CCIN	881	broad.mit.edu	37	9	36170244	36170244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:36170244C>T	uc003zzb.3	+	1	856	c.745C>T	c.(745-747)CAT>TAT	p.H249Y		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	249					cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			CACCTCATCCCATACAACCCT	0.522													15	2					0	0	1	0	0
POLR1E	64425	broad.mit.edu	37	9	37493678	37493678	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:37493678C>T	uc003zzz.1	+	5	999	c.711C>T	c.(709-711)ATC>ATT	p.I237I	POLR1E_uc011lqj.1_Intron|POLR1E_uc003zzy.1_Silent_p.I175I|POLR1E_uc011lqk.1_Silent_p.I104I	NM_022490	NP_071935	Q9GZS1	RPA49_HUMAN	RNA polymerase I associated factor 53	237					rRNA transcription	cell junction|cytoplasm|nucleolus	DNA binding|DNA-directed RNA polymerase activity|protein binding				0				GBM - Glioblastoma multiforme(29;0.00851)|Lung(182;0.229)		CAGAGACTATCATTGATACGA	0.458													9	24					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37729769	37729769	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:37729769C>T	uc004aag.1	+	8	701	c.657C>T	c.(655-657)ATC>ATT	p.I219I	FRMPD1_uc004aah.1_Silent_p.I219I|FRMPD1_uc011lqm.1_Silent_p.I41I|FRMPD1_uc011lqn.1_Silent_p.I88I	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	219	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TCCGAAGTATCGAGTACTTTG	0.567													63	13					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37744537	37744537	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:37744537G>A	uc004aag.1	+	16	2552	c.2508G>A	c.(2506-2508)AGG>AGA	p.R836R	FRMPD1_uc004aah.1_Silent_p.R836R	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	836						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGACCCTGAGGAAAAGAAGGT	0.552													73	3					0	0	1	0	0
FRMPD1	22844	broad.mit.edu	37	9	37746727	37746727	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:37746727C>T	uc004aag.1	+	16	4742	c.4698C>T	c.(4696-4698)TTC>TTT	p.F1566F	FRMPD1_uc004aah.1_Silent_p.F1566F	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1566						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CCGCCGTGTTCTGTTTGACCC	0.602													27	95					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39140590	39140590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:39140590G>A	uc004abi.2	-	12	2041	c.1802C>T	c.(1801-1803)CCG>CTG	p.P601L	CNTNAP3_uc004abj.2_Missense_Mutation_p.P601L|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.P601L|CNTNAP3_uc011lqs.1_Missense_Mutation_p.P508L|CNTNAP3_uc004abl.1_Missense_Mutation_p.P420L	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	601	Fibrinogen C-terminal.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AAGCCCAGACGGGTTCCCTCG	0.458													35	4					0	0	1	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39171503	39171503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:39171503C>T	uc004abi.2	-	8	1435	c.1196G>A	c.(1195-1197)CGA>CAA	p.R399Q	CNTNAP3_uc004abj.2_Missense_Mutation_p.R399Q|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.R399Q|CNTNAP3_uc011lqs.1_Missense_Mutation_p.R399Q|CNTNAP3_uc004abl.1_Missense_Mutation_p.R311Q	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	399	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GTTCCACGTTCGAAATTGAAA	0.502													11	18					0	0	1	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962602	41962602	+	RNA	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:41962602G>T	uc004aca.3	-	3		c.907C>A				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTCTTTCTTTGTTTTTTTTCC	0.373													7	14					7.48243e-07	7.51327e-07	1	1	0
ANKRD20A3	441425	broad.mit.edu	37	9	42368545	42368545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:42368545G>A	uc004acd.2	+	1	243	c.131G>A	c.(130-132)GGC>GAC	p.G44D	ANKRD20A3_uc010mmv.2_Missense_Mutation_p.G44D	NM_001012419	NP_001012419	Q5VUR7	A20A3_HUMAN	ankyrin repeat domain 20 family, member A3	44											0						GCTGTCAAAGGCGACGCCGCG	0.677													21	48					0	0	1	0	0
FAM189A2	9413	broad.mit.edu	37	9	72003127	72003127	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:72003127C>A	uc010mon.1	+	10	1014	c.910C>A	c.(910-912)CTG>ATG	p.L304M	FAM189A2_uc004ahg.2_Missense_Mutation_p.L304M|FAM189A2_uc010moo.1_Intron	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	304						integral to membrane					0						GAGACTGGATCTGGCTGCAGT	0.517													17	17					4.14922e-12	4.18357e-12	1	1	0
TRPM3	80036	broad.mit.edu	37	9	73736187	73736187	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:73736187C>T	uc004aid.2	-	1	328	c.84G>A	c.(82-84)GGG>GGA	p.G28G	TRPM3_uc004aic.2_Silent_p.G28G|TRPM3_uc010mor.2_Silent_p.G28G|TRPM3_uc004aii.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	28	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GATTCATGACCCCTTCCAAAT	0.512													19	28					0	0	1	0	0
TMC1	117531	broad.mit.edu	37	9	75407221	75407221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:75407221C>T	uc004aiz.1	+	17	2059	c.1519C>T	c.(1519-1521)CCT>TCT	p.P507S	TMC1_uc010moz.1_Missense_Mutation_p.P465S|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.P361S|TMC1_uc010mpa.1_Missense_Mutation_p.P361S	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	507	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TTTTGTTCACCCTGCAGATGT	0.438													80	18					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77400841	77400841	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77400841G>A	uc004ajl.1	-	21	3106	c.2868C>T	c.(2866-2868)TTC>TTT	p.F956F	TRPM6_uc004ajk.1_Silent_p.F951F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.F242F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	956	Helical; (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCACAGCAAAGAAGTCCAGGA	0.423													76	9					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77415286	77415286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77415286G>A	uc004ajl.1	-	17	2360	c.2122C>T	c.(2122-2124)CTT>TTT	p.L708F	TRPM6_uc004ajk.1_Missense_Mutation_p.L703F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.L86F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	708	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCCAGTTTAAGGCAGGTCGAA	0.507													31	12					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77415316	77415316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77415316C>T	uc004ajl.1	-	17	2330	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	TRPM6_uc004ajk.1_Missense_Mutation_p.E693K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.E76K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	698	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTCCTGAGTTCATACGTCAAC	0.522													31	8					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77442756	77442756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77442756C>T	uc004ajl.1	-	7	1017	c.779G>A	c.(778-780)GGA>GAA	p.G260E	TRPM6_uc004ajk.1_Missense_Mutation_p.G255E|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G260E|TRPM6_uc010mpd.1_Missense_Mutation_p.G260E|TRPM6_uc010mpe.1_Missense_Mutation_p.G260E|TRPM6_uc004ajn.1_Missense_Mutation_p.G260E	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	260	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CATTTCATTTCCATACTTGCC	0.512													19	26					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77457117	77457117	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77457117T>A	uc004ajl.1	-	4	533	c.295A>T	c.(295-297)AAT>TAT	p.N99Y	TRPM6_uc004ajk.1_Missense_Mutation_p.N94Y|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.N99Y|TRPM6_uc010mpd.1_Missense_Mutation_p.N99Y|TRPM6_uc010mpe.1_Missense_Mutation_p.N99Y|TRPM6_uc004ajn.1_Missense_Mutation_p.N99Y	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	99	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCTTGGAAATTAATCGTGCCA	0.353													45	9					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77457119	77457119	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:77457119A>T	uc004ajl.1	-	4	531	c.293T>A	c.(292-294)ATT>AAT	p.I98N	TRPM6_uc004ajk.1_Missense_Mutation_p.I93N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.I98N|TRPM6_uc010mpd.1_Missense_Mutation_p.I98N|TRPM6_uc010mpe.1_Missense_Mutation_p.I98N|TRPM6_uc004ajn.1_Missense_Mutation_p.I98N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	98	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTGGAAATTAATCGTGCCAAA	0.358													46	9					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	78969007	78969007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:78969007G>A	uc004akc.1	+	9	1521	c.1301G>A	c.(1300-1302)GGG>GAG	p.G434E						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		AAGGGACCAGGGGCCAAGAAC	0.542													3	5					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322150	79322150	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:79322150G>A	uc010mpk.2	-	8	5164	c.5040C>T	c.(5038-5040)GTC>GTT	p.V1680V		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1680					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TTGTTGAAATGACCCTGGCAT	0.468													10	20					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79324039	79324039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:79324039C>T	uc010mpk.2	-	8	3275	c.3151G>A	c.(3151-3153)GAT>AAT	p.D1051N		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1051					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCATTTTCATCCAGGTTGTGA	0.468													19	27					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325460	79325460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:79325460G>A	uc010mpk.2	-	8	1854	c.1730C>T	c.(1729-1731)CCC>CTC	p.P577L		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	577					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GTTATCTCTGGGACTGTCTTG	0.438													12	14					0	0	1	0	0
UBQLN1	29979	broad.mit.edu	37	9	86279949	86279949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:86279949G>A	uc004amv.2	-	9	2018	c.1444C>T	c.(1444-1446)CCA>TCA	p.P482S	UBQLN1_uc004amw.2_Missense_Mutation_p.P454S	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	482					apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						GCCTACCCTGGGATGAGGCCC	0.408													11	13					0	0	1	0	0
NTRK2	4915	broad.mit.edu	37	9	87285767	87285767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:87285767C>T	uc004aoa.1	+	4	1042	c.104C>T	c.(103-105)TCC>TTC	p.S35F	NTRK2_uc004anv.1_Missense_Mutation_p.S35F|NTRK2_uc004any.1_Missense_Mutation_p.S35F|NTRK2_uc004anz.1_Missense_Mutation_p.S35F|NTRK2_uc011lsz.1_Missense_Mutation_p.S35F|NTRK2_uc011lta.1_Missense_Mutation_p.S35F|NTRK2_uc004aob.1_Missense_Mutation_p.S35F|NTRK2_uc011ltb.1_5'Flank	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	35	Extracellular (Potential).|LRRNT.				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TGTCCCACGTCCTGCAAATGC	0.602										TSP Lung(25;0.17)			19	31					0	0	1	0	0
NTRK2	4915	broad.mit.edu	37	9	87359970	87359970	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:87359970C>T	uc004aoa.1	+	13	2216	c.1278C>T	c.(1276-1278)ACC>ACT	p.T426T	NTRK2_uc004anv.1_Silent_p.T413T|NTRK2_uc004any.1_Silent_p.T426T|NTRK2_uc004anz.1_Silent_p.T426T|NTRK2_uc011lsz.1_Silent_p.T426T|NTRK2_uc011lta.1_Silent_p.T426T|NTRK2_uc004aob.1_Silent_p.T426T|NTRK2_uc011ltb.1_Silent_p.T270T	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	426	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						CTGATAAAACCGGTCGGGAAC	0.458										TSP Lung(25;0.17)			41	4					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90501747	90501747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:90501747C>T	uc004app.3	+	4	2380	c.2345C>T	c.(2344-2346)CCC>CTC	p.P782L	C9orf79_uc004apo.1_Missense_Mutation_p.P594L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	782						integral to membrane				ovary(3)	3						GGCTGGATCCCCATGCCTGTG	0.567													25	3					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90749740	90749741	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:90749740_90749741GG>AA	uc011lti.1	-	1	160_161	c.131_132CC>TT	c.(130-132)CCC>CTT	p.P44L						SubName: Full=cDNA FLJ59639;																		AAGAGAAGTAGGGGAGTAATAG	0.51													5	30					0	0	1	0	0
SHC3	53358	broad.mit.edu	37	9	91686136	91686136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:91686136G>A	uc004aqg.2	-	5	1068	c.761C>T	c.(760-762)TCC>TTC	p.S254F		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	254	PID.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						AGAGGCGAAGGAGATGGACCG	0.502													25	1					0	0	1	0	0
SYK	6850	broad.mit.edu	37	9	93606229	93606230	+	Missense_Mutation	DNP	TT	CA	CA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:93606229_93606230TT>CA	uc004aqz.2	+	2	254_255	c.49_50TT>CA	c.(49-51)TTC>CAC	p.F17H	SYK_uc004aqy.2_Missense_Mutation_p.F17H|SYK_uc004ara.2_Missense_Mutation_p.F17H|SYK_uc004arb.2_Missense_Mutation_p.F17H|SYK_uc004arc.2_Missense_Mutation_p.F17H|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	17	SH2 1.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GCCCTTCTTTTTCGGCAACATC	0.629			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								9	0					0	0	1	0	0
IARS	3376	broad.mit.edu	37	9	95007262	95007262	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:95007262A>G	uc004art.1	-	27	3140	c.2883T>C	c.(2881-2883)TTT>TTC	p.F961F	IARS_uc004ars.1_Silent_p.F806F|IARS_uc004aru.3_Silent_p.F961F|IARS_uc010mqr.2_Silent_p.F851F|IARS_uc010mqt.2_Silent_p.F184F	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	961					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	AGTGTGCTTCAAATTGCGCAG	0.458													29	1					0	0	1	0	0
IARS	3376	broad.mit.edu	37	9	95027254	95027254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:95027254G>A	uc004art.1	-	16	1914	c.1657C>T	c.(1657-1659)CCT>TCT	p.P553S	IARS_uc004ars.1_Missense_Mutation_p.P398S|IARS_uc004aru.3_Missense_Mutation_p.P553S|IARS_uc010mqr.2_Missense_Mutation_p.P443S|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	553					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	AAATCTGCAGGAAAAGCATCC	0.433													16	2					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97084565	97084565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:97084565C>T	uc004aup.1	-	3	781	c.760G>A	c.(760-762)GAG>AAG	p.E254K		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	254											0		Acute lymphoblastic leukemia(62;0.136)				AGTCCCTCCTCCAGCGTCATG	0.617													8	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	98774985	98774985	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:98774985C>T	uc010msa.1	+	4	1972	c.1096C>T	c.(1096-1098)CTG>TTG	p.L366L	uc011lun.1_Intron					RecName: Full=Uncharacterized protein C9orf102;																		ATCCCGTTCTCTGAACAGTGA	0.428													11	12					0	0	1	0	0
CORO2A	7464	broad.mit.edu	37	9	100890913	100890913	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:100890913G>A	uc004ayl.2	-	9	1322	c.1056C>T	c.(1054-1056)CCC>CCT	p.P352P	CORO2A_uc004aym.2_Silent_p.P352P|CORO2A_uc004ayk.2_5'Flank	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	352					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				TCATGGAGATGGGCTCGATGA	0.597													16	4					0	0	1	0	0
CORO2A	7464	broad.mit.edu	37	9	100919812	100919812	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:100919812T>C	uc004ayl.2	-	2	397	c.131A>G	c.(130-132)AAC>AGC	p.N44S	CORO2A_uc004aym.2_Missense_Mutation_p.N44S|CORO2A_uc004ayn.2_Missense_Mutation_p.N44S	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	44					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				GAAGTGGGGGTTCACGGCACA	0.577													31	2					0	0	1	0	0
RNF20	56254	broad.mit.edu	37	9	104303238	104303238	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:104303238C>T	uc004bbn.2	+	5	699	c.609C>T	c.(607-609)TCC>TCT	p.S203S		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	203	Potential.				histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		AGCTCTTATCCCGGAAGCTAA	0.488													23	4					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104385666	104385666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:104385666C>T	uc004bbp.1	-	5	3149	c.2548G>A	c.(2548-2550)GAT>AAT	p.D850N	GRIN3A_uc004bbq.1_Missense_Mutation_p.D850N	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	850	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACTTCATAATCCAGAAGGGCT	0.398													12	27					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449448	104449448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:104449448G>A	uc004bbp.1	-	2	1335	c.734C>T	c.(733-735)TCA>TTA	p.S245L	GRIN3A_uc004bbq.1_Missense_Mutation_p.S245L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	245	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGAACTTAATGAATTTTCTAA	0.383													34	6					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767323	105767323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:105767323G>A	uc004bbs.2	+	5	480	c.410G>A	c.(409-411)GGA>GAA	p.G137E		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	137	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TTAaaacaaggaaaaaaagat	0.154													5	6					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767744	105767744	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:105767744C>T	uc004bbs.2	+	5	901	c.831C>T	c.(829-831)CCC>CCT	p.P277P		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	277	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				AGAAGAAGCCCAGTAGTACAG	0.259													10	16					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107267343	107267343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:107267343C>T	uc011lvm.1	+	1	800	c.800C>T	c.(799-801)TCA>TTA	p.S267L		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						GCTGTAGATTCACAGGAAATA	0.478													18	29					0	0	1	0	0
ABCA1	19	broad.mit.edu	37	9	107564426	107564426	+	Missense_Mutation	SNP	G	A	A	rs74913556		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:107564426G>A	uc004bcl.2	-	34	4920	c.4607C>T	c.(4606-4608)TCC>TTC	p.S1536F		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1536	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GACACCCAGGGAAAAGCCGCC	0.448													10	11					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112005938	112005938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:112005938G>A	uc004bdz.1	-	15	1664	c.1369C>T	c.(1369-1371)CCC>TCC	p.P457S	EPB41L4B_uc004bea.2_Missense_Mutation_p.P457S	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	457						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGCTGGCTGGGATGGATATTA	0.433													30	9					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113208295	113208295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:113208295C>T	uc010mtz.2	-	26	4622	c.4285G>A	c.(4285-4287)GAT>AAT	p.D1429N	SVEP1_uc010mua.1_Missense_Mutation_p.D1429N	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1429					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACTTCAAAATCCAGGTTAAAG	0.433													18	2					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113212422	113212422	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:113212422G>A	uc010mtz.2	-	24	4357	c.4020C>T	c.(4018-4020)ACC>ACT	p.T1340T	SVEP1_uc010mua.1_Silent_p.T1340T	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1340	EGF-like 4; calcium-binding (Potential).				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCCACATCGGGTACCCAAAA	0.463													130	17					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113562829	113562829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:113562829G>A	uc004bey.2	+	14	2269	c.2171G>A	c.(2170-2172)CGA>CAA	p.R724Q	MUSK_uc004bez.1_Missense_Mutation_p.R304Q	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	724	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TTTGTTCACCGAGATTTAGCC	0.552													47	66					0	0	1	0	0
C9orf43	257169	broad.mit.edu	37	9	116184837	116184837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:116184837G>A	uc004bho.3	+	6	851	c.455G>A	c.(454-456)GGG>GAG	p.G152E	C9orf43_uc004bhp.2_Missense_Mutation_p.G152E	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	152											0						AGCCAGCATGGGAAGAAGAAA	0.328													14	8					0	0	1	0	0
ZNF618	114991	broad.mit.edu	37	9	116812003	116812003	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:116812003C>T	uc004bid.2	+	15	2520	c.2421C>T	c.(2419-2421)ATC>ATT	p.I807I	ZNF618_uc004bic.2_Silent_p.I714I|ZNF618_uc011lxi.1_Silent_p.I774I|ZNF618_uc011lxj.1_Silent_p.I775I|ZNF618_uc010mvb.2_Silent_p.I397I	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	807					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGCCATGATCCTGGACCCGC	0.617													21	18					0	0	1	0	0
ORM1	5004	broad.mit.edu	37	9	117087361	117087361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:117087361G>A	uc004bik.3	+	5	580	c.469G>A	c.(469-471)GGA>AGA	p.G157R	ORM1_uc011lxo.1_Intron	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	157					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	GGAGCAACTGGGAGAGTTCTA	0.597													20	23					0	0	1	0	0
DFNB31	25861	broad.mit.edu	37	9	117168952	117168952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:117168952G>A	uc004biz.3	-	9	2568	c.1919C>T	c.(1918-1920)TCC>TTC	p.S640F	DFNB31_uc004bix.2_Missense_Mutation_p.S289F|DFNB31_uc004biy.3_Missense_Mutation_p.S257F|DFNB31_uc004bja.3_Missense_Mutation_p.S640F	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	640	Pro-rich.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGTGCAGAGGAGGTCCCTGG	0.672													44	4					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118949435	118949435	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:118949435C>T	uc004bjn.2	+	2	799	c.418C>T	c.(418-420)CTG>TTG	p.L140L	PAPPA_uc011lxp.1_5'UTR|PAPPA_uc011lxq.1_5'UTR	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	140					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCACATAGGGCTGTATGACAA	0.413													28	2					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118982318	118982318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:118982318C>T	uc004bjn.2	+	5	2402	c.2021C>T	c.(2020-2022)CCT>CTT	p.P674L	PAPPA_uc011lxp.1_Missense_Mutation_p.P369L|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	674					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AAACCAGCGCCTGTTGCCCTC	0.577													28	36					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119770442	119770442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:119770442G>A	uc004bjs.1	-	7	1621	c.1520C>T	c.(1519-1521)TCC>TTC	p.S507F	ASTN2_uc004bjr.1_Missense_Mutation_p.S507F|ASTN2_uc004bjt.1_Missense_Mutation_p.S456F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	507	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CACCCATGGGGAGGTGGCATT	0.572													19	16					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	120053608	120053608	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:120053608C>T	uc004bjs.1	-	2	728	c.627G>A	c.(625-627)GTG>GTA	p.V209V	ASTN2_uc004bjr.1_Silent_p.V209V|ASTN2_uc004bjt.1_Silent_p.V209V	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	209	Helical; (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CACTCACCATCACAGAAATGT	0.627													13	14					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476488	120476488	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:120476488G>A	uc004bjz.2	+	3	2373	c.2082G>A	c.(2080-2082)AAG>AAA	p.K694K	TLR4_uc004bka.2_Silent_p.K654K|TLR4_uc004bkb.2_Silent_p.K494K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	694	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGCTAGTAAAGAATTTAGAAG	0.453													48	6					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120476800	120476800	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:120476800G>A	uc004bjz.2	+	3	2685	c.2394G>A	c.(2392-2394)GAG>GAA	p.E798E	TLR4_uc004bka.2_Silent_p.E758E|TLR4_uc004bkb.2_Silent_p.E598E	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	798	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGGAGTGGGAGGACAGTGTCC	0.542													22	46					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929979	121929979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:121929979C>T	uc004bkc.2	-	8	2125	c.1669G>A	c.(1669-1671)GAC>AAC	p.D557N		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	557					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AACATGGGGTCCAGGCTGCTG	0.552													28	2					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121930184	121930184	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:121930184C>T	uc004bkc.2	-	8	1920	c.1464G>A	c.(1462-1464)CTG>CTA	p.L488L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	488					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCAGGTACTTCAGCTCCAGGT	0.577													15	12					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121930398	121930398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:121930398C>T	uc004bkc.2	-	8	1706	c.1250G>A	c.(1249-1251)GGC>GAC	p.G417D		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	417					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CGTGGTGCTGCCGTGGCACAC	0.617													4	0					0	0	1	0	0
TTLL11	158135	broad.mit.edu	37	9	124751570	124751570	+	Silent	SNP	G	A	A	rs149659494	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:124751570G>A	uc004blt.1	-	4	1631	c.1443C>T	c.(1441-1443)TCC>TCT	p.S481S	TTLL11_uc011lyl.1_Silent_p.S481S|TTLL11_uc004blr.2_RNA|TTLL11_uc011lym.1_Silent_p.S158S|TTLL11_uc004blu.1_3'UTR	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	481	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						TAATCACCACGGAGATGATGT	0.532													15	22					0	0	1	0	0
OR1J2	26740	broad.mit.edu	37	9	125273161	125273161	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:125273161C>T	uc004bmj.1	+	4	936	c.81C>T	c.(79-81)TTC>TTT	p.F27F	OR1J2_uc011lyv.1_Silent_p.F27F	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						AGGCTGTGTTCTTCACCCTGT	0.592													46	61					0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125288700	125288700	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:125288700C>T	uc004bmn.1	-	1	873	c.873G>A	c.(871-873)AGG>AGA	p.R291R		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TGTCCTTGTTCCTTAGGCTAT	0.408													13	14					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330655	125330655	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:125330655G>A	uc004bmp.1	-	1	102	c.102C>T	c.(100-102)ATC>ATT	p.I34I		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CCAGGTACACGATGAGGAAGA	0.498													13	23					0	0	1	0	0
OR1L4	254973	broad.mit.edu	37	9	125486746	125486746	+	Missense_Mutation	SNP	C	T	T	rs149512495		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:125486746C>T	uc004bmu.1	+	1	478	c.478C>T	c.(478-480)CGC>TGC	p.R160C		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCCCTGTTCCGCGTGCTACT	0.483													94	21					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126132958	126132959	+	Missense_Mutation	DNP	CC	TT	TT	rs146158114		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:126132958_126132959CC>TT	uc004bnx.1	+	7	1718_1719	c.1626_1627CC>TT	c.(1624-1629)GCCCGG>GCTTGG	p.R543W	CRB2_uc004bnw.1_Missense_Mutation_p.R543W	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	543	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GCTGCCCTGCCCGGCTCTGTGT	0.668													42	3					0	0	1	0	0
MAPKAP1	79109	broad.mit.edu	37	9	128434603	128434603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:128434603G>A	uc004bpv.2	-	2	584	c.251C>T	c.(250-252)TCA>TTA	p.S84L	MAPKAP1_uc004bpw.2_Intron|MAPKAP1_uc004bpx.2_Intron|MAPKAP1_uc004bpy.2_Missense_Mutation_p.S84L|MAPKAP1_uc004bpz.2_Missense_Mutation_p.S84L|MAPKAP1_uc010mxa.2_RNA|MAPKAP1_uc004bqa.2_Missense_Mutation_p.S84L	NM_001006617	NP_001006618	Q9BPZ7	SIN1_HUMAN	mitogen-activated protein kinase associated	84	Interaction with MAP3K2.			WDFGIRRRSNT -> ADPARSVEAAS (in Ref. 9; AAA36551).	nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|response to stress|T cell costimulation	cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	Ras GTPase binding			ovary(2)|lung(2)	4						ACCTGTGTTTGAGCGTCTTCT	0.403													7	17					0	0	1	0	0
C9orf119	375757	broad.mit.edu	37	9	131038503	131038503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:131038503G>A	uc004bup.2	+	1	79	c.79G>A	c.(79-81)GAG>AAG	p.E27K	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.E27K	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	27					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						CCCACCTCGGGAGAGGGGCGG	0.682													12	17					0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131339676	131339676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:131339676C>T	uc004bvl.3	+	8	1089	c.976C>T	c.(976-978)CCT>TCT	p.P326S	SPTAN1_uc011mbg.1_Missense_Mutation_p.P326S|SPTAN1_uc011mbh.1_Missense_Mutation_p.P338S|SPTAN1_uc004bvm.3_Missense_Mutation_p.P326S|SPTAN1_uc004bvn.3_Missense_Mutation_p.P326S	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	326	Spectrin 4.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ACAGTCCCACCCTCTGAGTGC	0.512													48	7					0	0	1	0	0
LRRC8A	56262	broad.mit.edu	37	9	131669450	131669450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:131669450C>T	uc004bwl.3	+	3	261	c.7C>T	c.(7-9)CCG>TCG	p.P3S	LRRC8A_uc010myp.2_Missense_Mutation_p.P3S|LRRC8A_uc010myq.2_Missense_Mutation_p.P3S	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	3					pre-B cell differentiation	integral to membrane					0						AACCATGATTCCGGTGACAGA	0.542													23	1					0	0	1	0	0
FAM73B	84895	broad.mit.edu	37	9	131804710	131804710	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:131804710T>C	uc004bxa.2	+	3	410	c.224T>C	c.(223-225)GTT>GCT	p.V75A	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Missense_Mutation_p.V75A	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	75						integral to membrane				skin(1)	1						AAGAAGCAGGTTGGTCCCGAG	0.592													4	10					0	0	1	0	0
METTL11A	28989	broad.mit.edu	37	9	132396539	132396539	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:132396539C>T	uc004byd.1	+	3	563	c.369C>T	c.(367-369)ACC>ACT	p.T123T	METTL11A_uc010myw.1_Intron|METTL11A_uc011mbs.1_Intron	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	123					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						AGGACTTCACCCCGGAGCCGG	0.587													24	29					0	0	1	0	0
C9orf171	389799	broad.mit.edu	37	9	135374956	135374956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:135374956C>T	uc004cbn.2	+	4	649	c.601C>T	c.(601-603)CCT>TCT	p.P201S	C9orf171_uc004cbo.2_Missense_Mutation_p.P165S	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	201										ovary(4)|large_intestine(1)	5						GCCCCCTCTCCCTCCAAACAT	0.597													20	19					0	0	1	0	0
RALGDS	5900	broad.mit.edu	37	9	135977931	135977931	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:135977931G>A	uc004cco.2	-	14	1961	c.1941C>T	c.(1939-1941)CCC>CCT	p.P647P	RALGDS_uc004cct.1_5'Flank|RALGDS_uc004ccn.2_5'Flank|RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Silent_p.P635P|RALGDS_uc004ccr.2_Silent_p.P646P|RALGDS_uc011mcv.1_Silent_p.P618P|RALGDS_uc004ccs.2_Silent_p.P592P|RALGDS_uc011mcw.1_Silent_p.P718P|RALGDS_uc004ccv.1_Silent_p.P416P|RALGDS_uc004ccu.1_Silent_p.P416P	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	647	Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		ACTCGGATGGGGGCTCCAGCT	0.632			T	CIITA	PMBL|Hodgkin Lymphona|								15	44					0	0	1	0	0
C9orf96	169436	broad.mit.edu	37	9	136259533	136259533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:136259533G>A	uc004cdk.2	+	8	760	c.699G>A	c.(697-699)ATG>ATA	p.M233I	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	233	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GCTCCTTCATGGATGTGAGCC	0.622													19	18					0	0	1	0	0
SLC2A6	11182	broad.mit.edu	37	9	136341396	136341396	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:136341396G>A	uc004cee.2	-	4	620	c.525C>T	c.(523-525)CTC>CTT	p.L175L	SLC2A6_uc004cef.2_Silent_p.L175L|SLC2A6_uc004ceg.2_Silent_p.L175L|SLC2A6_uc011mdj.1_Silent_p.L175L	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	175	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		ACACTGCCATGAGCTGGGGTG	0.632													28	2					0	0	1	0	0
TMEM8C	389827	broad.mit.edu	37	9	136384016	136384016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:136384016G>A	uc011mdk.1	-	3	379	c.379C>T	c.(379-381)CTC>TTC	p.L127F		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	127	Helical; (Potential).					integral to membrane					0						GCGATGATGAGGATGGCTGTG	0.622													11	22					0	0	1	0	0
DBH	1621	broad.mit.edu	37	9	136523445	136523445	+	Nonsense_Mutation	SNP	G	A	A	rs77724989		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:136523445G>A	uc004cel.2	+	12	1739	c.1730G>A	c.(1729-1731)TGG>TAG	p.W577*	uc010nao.1_5'Flank	NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	577	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CAGGGTGAATGGAACCTGCAG	0.547													17	43					0	0	1	0	0
RXRA	6256	broad.mit.edu	37	9	137313574	137313574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:137313574C>T	uc004cfb.2	+	6	995	c.833C>T	c.(832-834)ACC>ATC	p.T278I	RXRA_uc004cfc.1_Missense_Mutation_p.T181I|RXRA_uc004cfd.1_Missense_Mutation_p.T49I	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	278	Ligand-binding.				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	CAGCTTTTCACCCTGGTGGAG	0.602													17	36					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137630654	137630654	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:137630654G>A	uc004cfe.2	+	11	1876	c.1494G>A	c.(1492-1494)AGG>AGA	p.R498R		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	498	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTGGAGAAAGGGTAAGAGGTT	0.562													45	2					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137696875	137696876	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:137696875_137696876GG>AA	uc004cfe.2	+	40	3551_3552	c.3169_3170GG>AA	c.(3169-3171)GGT>AAT	p.G1057N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1057	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGATTACGTGGTTTCCCTGGG	0.624													25	1					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137703188	137703188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:137703188C>T	uc004cfe.2	+	45	3914	c.3532C>T	c.(3532-3534)CCT>TCT	p.P1178S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1178	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCCGCAGGGTCCTCCTGGGCC	0.612											OREG0019605	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	75					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516219	138516219	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138516219C>T	uc010nbd.1	-	5	809	c.555G>A	c.(553-555)GAG>GAA	p.E185E		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	185	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		GGCCCAGGGTCTCCACCCCGA	0.582													18	19					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516287	138516287	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138516287G>A	uc010nbd.1	-	5	741	c.487C>T	c.(487-489)CAG>TAG	p.Q163*		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	163	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		ACCTCGTCCTGGATGTGACTG	0.597													10	10					0	0	1	0	0
LCN9	392399	broad.mit.edu	37	9	138557709	138557709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138557709C>T	uc004cgk.1	+	6	478	c.478C>T	c.(478-480)CCC>TCC	p.P160S		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	160						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		CCTTCCAGATCCCTGCTACTC	0.692													4	5					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138712877	138712877	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138712877G>A	uc004cgr.3	-	11	3630	c.3630C>T	c.(3628-3630)TCC>TCT	p.S1210S	CAMSAP1_uc004cgq.3_Silent_p.S1100S|CAMSAP1_uc010nbg.2_Silent_p.S932S	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1210	Poly-Ser.					cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTGAGGAGCTGGACCCCACCT	0.567													50	6					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713478	138713478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138713478G>A	uc004cgr.3	-	11	3029	c.3029C>T	c.(3028-3030)ACT>ATT	p.T1010I	CAMSAP1_uc004cgq.3_Missense_Mutation_p.T900I|CAMSAP1_uc010nbg.2_Missense_Mutation_p.T732I	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1010						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTCCCCAACAGTGTCCTCCAG	0.522													6	14					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138714533	138714533	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:138714533G>A	uc004cgr.3	-	11	1974	c.1974C>T	c.(1972-1974)TTC>TTT	p.F658F	CAMSAP1_uc004cgq.3_Silent_p.F548F|CAMSAP1_uc010nbg.2_Silent_p.F380F	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	658						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TGCCCATGGGGAATTCTGAGC	0.592													15	18					0	0	1	0	0
QSOX2	169714	broad.mit.edu	37	9	139113660	139113660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139113660G>A	uc010nbi.2	-	6	841	c.803C>T	c.(802-804)TCG>TTG	p.S268L		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	268					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		CAATCCATGCGACCCATTTGG	0.557													35	4					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139368623	139368623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139368623G>A	uc004chx.2	-	3	3754	c.3445C>T	c.(3445-3447)CCC>TCC	p.P1149S	SEC16A_uc004chv.3_Missense_Mutation_p.P539S|SEC16A_uc004chw.2_Missense_Mutation_p.P1149S|SEC16A_uc010nbn.2_Missense_Mutation_p.P1149S|SEC16A_uc010nbo.1_Missense_Mutation_p.P1149S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	971	Pro-rich.|Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGTGGGCCGGGGGCAAGTGCA	0.657													6	13					0	0	1	0	0
LCN8	138307	broad.mit.edu	37	9	139651584	139651584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139651584C>T	uc004cjb.1	-	2	410	c.61G>A	c.(61-63)GAT>AAT	p.D21N	LCN8_uc004cja.2_5'Flank|LCN8_uc004cjc.1_Missense_Mutation_p.D21N	NM_178469	NP_848564	Q6JVE9	LCN8_HUMAN	lipocalin 8	44					transport	extracellular region	binding			pancreas(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;5.56e-06)|Epithelial(140;8.32e-05)		AGGCTTTGATCGGAGGCCACA	0.582													4	10					0	0	1	0	0
FBXW5	54461	broad.mit.edu	37	9	139835912	139835912	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139835912G>A	uc004cjx.2	-	8	1399	c.1248C>T	c.(1246-1248)TAC>TAT	p.Y416Y	FBXW5_uc010nbx.2_RNA|FBXW5_uc004cjy.2_Silent_p.Y164Y|FBXW5_uc004cjz.2_Silent_p.Y146Y	NM_018998	NP_061871	Q969U6	FBXW5_HUMAN	F-box and WD repeat domain containing 5	416							catalytic activity|protein binding				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		TCACGTACAGGTACCTGGGCG	0.692													8	21					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139904235	139904235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139904235C>T	uc011mem.1	-	42	6761	c.6613G>A	c.(6613-6615)GCC>ACC	p.A2205T	ABCA2_uc011mel.1_Missense_Mutation_p.A2206T|ABCA2_uc004ckl.1_Missense_Mutation_p.A2136T|ABCA2_uc004ckm.1_Missense_Mutation_p.A2236T	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	2205	ABC transporter 2.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AAGATGAAGGCTGGGTACCCA	0.642													11	10					0	0	1	0	0
ENTPD2	954	broad.mit.edu	37	9	139945407	139945407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139945407G>A	uc004ckw.1	-	5	777	c.721C>T	c.(721-723)CTC>TTC	p.L241F	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Missense_Mutation_p.L241F	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	241	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CCATAGCAGAGGAAGCTGTGG	0.622													20	4					0	0	1	0	0
MAN1B1	11253	broad.mit.edu	37	9	139995980	139995980	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:139995980C>T	uc004cld.2	+	8	1145	c.1110C>T	c.(1108-1110)TCC>TCT	p.S370S	MAN1B1_uc004clc.2_Silent_p.S271S|MAN1B1_uc011meo.1_Silent_p.S271S|MAN1B1_uc011mep.1_Silent_p.S370S|MAN1B1_uc010ncc.2_RNA|MAN1B1_uc004clf.1_5'Flank	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	370	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		GAACACCATCCAAGATTCCTT	0.547													13	12					0	0	1	0	0
RNF208	727800	broad.mit.edu	37	9	140115071	140115071	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:140115071G>A	uc004clz.1	-	1	705	c.594C>T	c.(592-594)GAC>GAT	p.D198D		NM_031297	NP_112587	Q9H0X6	RN208_HUMAN	ring finger protein 208	198							zinc ion binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CCAGGCCGTAGTCGGTGAAGA	0.662													11	14					0	0	1	0	0
WDR85	92715	broad.mit.edu	37	9	140450030	140450030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:140450030C>T	uc004cnk.1	-	9	1178	c.1020G>A	c.(1018-1020)TGG>TGA	p.W340*	WDR85_uc004cnj.1_Nonsense_Mutation_p.W69*|WDR85_uc004cnl.1_Nonsense_Mutation_p.W164*|WDR85_uc004cnm.1_Nonsense_Mutation_p.W101*|WDR85_uc004cnn.1_Nonsense_Mutation_p.W69*|WDR85_uc004cni.2_RNA	NM_138778	NP_620133	Q9BTV6	WDR85_HUMAN	WD repeat domain 85	340					peptidyl-diphthamide biosynthetic process from peptidyl-histidine						0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.00029)|Epithelial(140;0.000509)		GCAGCCAGGACCAGTCGGCTC	0.602													18	26					0	0	1	0	0
EHMT1	79813	broad.mit.edu	37	9	140611623	140611623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:140611623G>A	uc011mfc.1	+	3	668	c.631G>A	c.(631-633)GTC>ATC	p.V211I	EHMT1_uc004coa.2_Missense_Mutation_p.V211I|EHMT1_uc004cob.1_Missense_Mutation_p.V180I	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	211					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GCCGAAGTCCGTCGTGGGCCT	0.547													9	13					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140772572	140772573	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:140772572_140772573CC>TT	uc004cog.2	+	1	332_333	c.187_188CC>TT	c.(187-189)CCG>TTG	p.P63L	uc004cof.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	63	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CAACCCCATCCCGGTCAAGCAG	0.55													7	20					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140846732	140846732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr9:140846732G>A	uc004cog.2	+	7	1118	c.973G>A	c.(973-975)GAT>AAT	p.D325N		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	325	I.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCAGACAAACGATGCGGCCGG	0.597													9	27					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3238090	3238090	+	Missense_Mutation	SNP	C	T	T	rs147225813		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:3238090C>T	uc004crg.3	-	5	5793	c.5636G>A	c.(5635-5637)GGA>GAA	p.G1879E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1879	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTTGGTTTTCCTGTTGCCTC	0.433													16	16					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241590	3241590	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:3241590C>T	uc004crg.3	-	5	2293	c.2136G>A	c.(2134-2136)AGG>AGA	p.R712R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	712						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCAGAAGTCTCCTTGAAGTGT	0.502													36	1					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241889	3241889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:3241889G>A	uc004crg.3	-	5	1994	c.1837C>T	c.(1837-1839)CTT>TTT	p.L613F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	613	Ig-like C2-type 2.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGTTTGGAAGAATCCAGCTA	0.453													11	15					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3248157	3248157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:3248157C>T	uc004crg.3	-	4	768	c.611G>A	c.(610-612)CGG>CAG	p.R204Q		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	204	LRR 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CGGCATGTTCCGAAGCATGCT	0.458													7	6					0	0	1	0	0
STS	412	broad.mit.edu	37	X	7171258	7171258	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:7171258C>T	uc004cry.3	+	2	278	c.33C>T	c.(31-33)CTC>CTT	p.L11L	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	11					female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	TCCCTTTCCTCCTACTGTTCT	0.428									Ichthyosis				11	10					0	0	1	0	0
STS	412	broad.mit.edu	37	X	7171306	7171306	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:7171306G>A	uc004cry.3	+	2	326	c.81G>A	c.(79-81)CCG>CCA	p.P27P	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	27	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CATCAAGGCCGAACATCATCC	0.498									Ichthyosis				25	16					0	0	1	0	0
FAM9A	171482	broad.mit.edu	37	X	8766516	8766516	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:8766516C>T	uc004csg.2	-	4	336	c.225G>A	c.(223-225)AAG>AAA	p.K75K		NM_174951	NP_777611	Q8IZU1	FAM9A_HUMAN	family with sequence similarity 9, member A	75						nucleolus					0		Hepatocellular(5;0.219)				GGACTGGATCCTTTCCTGCAT	0.383													56	4					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13637345	13637345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:13637345C>T	uc004cvi.2	+	9	1406	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	EGFL6_uc004cvj.2_Missense_Mutation_p.S389F|EGFL6_uc011mik.1_Missense_Mutation_p.S290F	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	389					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						GCGCTAACTTCCAAACTGGAA	0.378													31	3					0	0	1	0	0
BEND2	139105	broad.mit.edu	37	X	18230704	18230704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:18230704C>T	uc004cyj.3	-	4	627	c.473G>A	c.(472-474)GGA>GAA	p.G158E	BEND2_uc010nfb.2_Missense_Mutation_p.G158E	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	158										ovary(3)|kidney(1)|central_nervous_system(1)	5						ATAGAATCTTCCTCTTTTTGG	0.333													21	28					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20081556	20081557	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:20081556_20081557CC>TT	uc004czr.1	-	3	366_367	c.347_348GG>AA	c.(346-348)AGG>AAA	p.R116K	MAP7D2_uc011mji.1_Missense_Mutation_p.R72K|MAP7D2_uc010nfo.1_Missense_Mutation_p.R116K|MAP7D2_uc011mjj.1_Missense_Mutation_p.R116K|MAP7D2_uc004czs.1_Missense_Mutation_p.R72K	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	116	Potential.									ovary(2)|breast(1)	3						GCTTCTGTTTCCTTTTCTCTTC	0.609													6	18					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20081642	20081642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:20081642C>T	uc004czr.1	-	3	281	c.262G>A	c.(262-264)GAA>AAA	p.E88K	MAP7D2_uc011mji.1_Missense_Mutation_p.E44K|MAP7D2_uc010nfo.1_Missense_Mutation_p.E88K|MAP7D2_uc011mjj.1_Missense_Mutation_p.E88K|MAP7D2_uc004czs.1_Missense_Mutation_p.E44K	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	88	Potential.									ovary(2)|breast(1)	3						ATTTGCTTTTCGTACTGCAGC	0.527													31	7					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21450761	21450761	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:21450761C>A	uc004czx.1	+	3	296	c.260C>A	c.(259-261)ACC>AAC	p.T87N	CNKSR2_uc004czw.2_Missense_Mutation_p.T87N|CNKSR2_uc011mjn.1_Missense_Mutation_p.T87N|CNKSR2_uc011mjo.1_Missense_Mutation_p.T87N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	87	CRIC.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AATCTAAAAACCCTTTCTCAC	0.303													10	52					3.07112e-06	3.08089e-06	1	1	0
ZNF645	158506	broad.mit.edu	37	X	22291921	22291921	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:22291921C>T	uc004dai.1	+	1	862	c.813C>T	c.(811-813)TCC>TCT	p.S271S		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	271	Pro-rich.					intracellular	zinc ion binding			lung(1)|pancreas(1)	2						CGGTATCGTCCCCTCATCATA	0.433													63	7					0	0	1	0	0
FAM48B1	100130302	broad.mit.edu	37	X	24383471	24383471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:24383471C>T	uc011mjx.1	+	1	2594	c.2594C>T	c.(2593-2595)CCA>CTA	p.P865L		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1						CAGCCACATCCAGGTGTGCAA	0.542													19	32					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26213014	26213014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:26213014G>A	uc004dbr.2	+	2	1200	c.1051G>A	c.(1051-1053)GAT>AAT	p.D351N	MAGEB6_uc010ngc.1_Missense_Mutation_p.D131N	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	351	MAGE.									ovary(3)	3						GTGCAACAGTGATCCTCCATG	0.502													18	35					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839927	27839927	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:27839927G>A	uc004dbw.2	+	3	731	c.504G>A	c.(502-504)CTG>CTA	p.L168L		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	168	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						GTCTTGACCTGAAGGAAGTGG	0.473													25	31					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27997672	27997672	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:27997672G>A	uc004dbx.1	-	1	1895	c.1780C>T	c.(1780-1782)CGA>TGA	p.R594*		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	594										ovary(3)|skin(1)	4						CACTGCACTCGATCTTGGCCC	0.478													13	12					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999004	27999004	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:27999004G>A	uc004dbx.1	-	1	563	c.448C>T	c.(448-450)CTG>TTG	p.L150L		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	150										ovary(3)|skin(1)	4						GATCGGGGCAGGGCAGATGTC	0.567													6	6					0	0	1	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254555	30254555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:30254555G>A	uc004dca.1	+	5	1251	c.514G>A	c.(514-516)GAT>AAT	p.D172N		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	172	MAGE.										0						AAAGAAAGTTGATTCTACCAA	0.423													8	21					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32382752	32382752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:32382752G>A	uc004dda.1	-	36	5345	c.5101C>T	c.(5101-5103)CTT>TTT	p.L1701F	DMD_uc004dcw.2_Missense_Mutation_p.L357F|DMD_uc004dcx.2_Missense_Mutation_p.L360F|DMD_uc004dcz.2_Missense_Mutation_p.L1578F|DMD_uc004dcy.1_Missense_Mutation_p.L1697F|DMD_uc004ddb.1_Missense_Mutation_p.L1693F|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1701	Spectrin 12.|Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCATCCAAAAGTGTGTCAGCC	0.373													23	31					0	0	1	0	0
EFHC2	80258	broad.mit.edu	37	X	44088967	44088967	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:44088967G>T	uc004dgb.3	-	12	1769	c.1679C>A	c.(1678-1680)TCC>TAC	p.S560Y		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	560	EF-hand.						calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						GAGCTCTCTGGATTTTCCTTC	0.373													12	18					2.80697e-09	2.82331e-09	1	1	0
SLC9A7	84679	broad.mit.edu	37	X	46529114	46529114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:46529114C>T	uc004dgu.1	-	5	729	c.721G>A	c.(721-723)GGA>AGA	p.G241R	SLC9A7_uc004dgv.1_Missense_Mutation_p.G241R	NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	241					regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						GAGAGCTGTCCCATAATCTTC	0.373													8	13					0	0	1	0	0
ZNF182	7569	broad.mit.edu	37	X	47836032	47836032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:47836032G>A	uc004dir.2	-	7	1800	c.1454C>T	c.(1453-1455)CCT>CTT	p.P485L	ZNF182_uc004dis.2_Missense_Mutation_p.P466L|ZNF182_uc004dit.2_Missense_Mutation_p.P485L|ZNF182_uc011mlu.1_Missense_Mutation_p.P465L	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						GCACTCGTAAGGTTTCTCTCC	0.368													18	19					0	0	1	0	0
OTUD5	55593	broad.mit.edu	37	X	48791869	48791869	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:48791869G>A	uc004dlu.2	-	5	1003	c.942C>T	c.(940-942)TTC>TTT	p.F314F	OTUD5_uc004dlt.3_Silent_p.F309F|OTUD5_uc004dlv.2_Silent_p.F309F|OTUD5_uc011mmp.1_Silent_p.F92F	NM_017602	NP_060072	Q96G74	OTUD5_HUMAN	OTU domain containing 5 isoform a	314	OTU.				negative regulation of type I interferon production		cysteine-type peptidase activity			pancreas(1)	1						GTATCCCATGGAATGTGTTGA	0.502													33	37					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49063532	49063532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:49063532C>T	uc004dnb.2	-	44	5260	c.5198G>A	c.(5197-5199)GGA>GAA	p.G1733E	CACNA1F_uc010nip.2_Missense_Mutation_p.G1722E	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1733	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CTGAGAATTTCCTTCTTCTGG	0.547													8	2					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50119875	50119875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:50119875C>T	uc010njr.1	-	24	3214	c.3154G>A	c.(3154-3156)GAA>AAA	p.E1052K		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	1052					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GCTTGAATTTCAGTATGCTTG	0.483													4	11					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50131544	50131544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:50131544C>T	uc010njr.1	-	13	2059	c.1999G>A	c.(1999-2001)GAG>AAG	p.E667K		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	667					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					ATGATCATCTCTGTGGGGTAC	0.517													11	1					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53581758	53581758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:53581758G>A	uc004dsp.2	-	61	8732	c.8330C>T	c.(8329-8331)CCA>CTA	p.P2777L	HUWE1_uc004dsn.2_Missense_Mutation_p.P1601L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2777					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CAAAGCTGGTGGGGTTGGGAG	0.542													17	13					0	0	1	0	0
WNK3	65267	broad.mit.edu	37	X	54263408	54263408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:54263408C>T	uc004dtd.1	-	20	4889	c.4450G>A	c.(4450-4452)GAG>AAG	p.E1484K	WNK3_uc004dtc.1_Missense_Mutation_p.E1531K	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1484					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TTCAAGTCCTCATCCTCTATT	0.408													84	11					0	0	1	0	0
WNK3	65267	broad.mit.edu	37	X	54275315	54275315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:54275315G>A	uc004dtd.1	-	17	3905	c.3466C>T	c.(3466-3468)CCA>TCA	p.P1156S	WNK3_uc004dtc.1_Missense_Mutation_p.P1156S	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1156					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TCTGTCACTGGACAGGAGAGG	0.463													64	1					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54785238	54785238	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:54785238G>A	uc004dtj.2	-	8	1299	c.1269C>T	c.(1267-1269)TCC>TCT	p.S423S		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	423	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						AGCTGAAAAGGGATACCCTGT	0.592													11	13					0	0	1	0	0
PAGE5	90737	broad.mit.edu	37	X	55247856	55247856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:55247856G>A	uc004duj.2	+	2	343	c.101G>A	c.(100-102)GGA>GAA	p.G34E	PAGE5_uc004duk.2_Missense_Mutation_p.G14E	NM_130467	NP_569734	Q96GU1	GGEE1_HUMAN	P antigen family, member 5 isoform 1	34											0						TCAGAAAGAGGAAATGACCAA	0.328													15	16					0	0	1	0	0
FAAH2	158584	broad.mit.edu	37	X	57405110	57405110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:57405110C>T	uc004dvc.2	+	6	918	c.769C>T	c.(769-771)CCC>TCC	p.P257S		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	257						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						AGGTCAGTTTCCCTTGGCTGT	0.507										HNSCC(52;0.14)			26	32					0	0	1	0	0
FAAH2	158584	broad.mit.edu	37	X	57458438	57458438	+	Missense_Mutation	SNP	G	A	A	rs138462668	byFrequency	TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:57458438G>A	uc004dvc.2	+	8	1233	c.1084G>A	c.(1084-1086)GCA>ACA	p.A362T		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	362						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GTTGTGGATCGCAATGATGTC	0.303										HNSCC(52;0.14)			30	4					0	0	1	0	0
MTMR8	55613	broad.mit.edu	37	X	63444870	63444870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:63444870G>A	uc011mou.1	-	10	1854	c.1786C>T	c.(1786-1788)CCA>TCA	p.P596S	ASB12_uc004dvp.1_Missense_Mutation_p.P212S|ASB12_uc004dvq.1_Missense_Mutation_p.P221S|ASB12_uc004dvr.1_Missense_Mutation_p.P221S	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CGGGGTCTTGGGACACGAGCC	0.537													7	7					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65392422	65392422	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:65392422C>T	uc011moz.1	+	3	462	c.402C>T	c.(400-402)TTC>TTT	p.F134F	HEPH_uc004dwn.2_Silent_p.F134F|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Silent_p.F134F|HEPH_uc011mpa.1_Silent_p.F134F	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	131	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ATGGTGTCTTCTACGAGAAGG	0.483													20	32					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65420575	65420575	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:65420575C>T	uc011moz.1	+	12	2127	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	HEPH_uc004dwn.2_Silent_p.I689I|HEPH_uc004dwo.2_Silent_p.I419I|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Silent_p.I689I|HEPH_uc010nks.2_5'Flank	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	686	Plastocyanin-like 4.|Extracellular (Potential).				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TCATGGCCATCATGCAGCCTG	0.547													10	1					0	0	1	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69419702	69419702	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:69419702G>A	uc004dxx.1	+	3	334	c.237G>A	c.(235-237)TGG>TGA	p.W79*		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	79					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						GGACCCTATGGAAGTATTTCC	0.552													10	7					0	0	1	0	0
AWAT1	158833	broad.mit.edu	37	X	69460015	69460015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:69460015G>A	uc004dxy.2	+	7	903	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	288					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						GCCCCAAATTGAAAAGCCAAG	0.493													21	0					0	0	1	0	0
KIF4A	24137	broad.mit.edu	37	X	69639986	69639986	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:69639986C>T	uc004dyg.2	+	31	3697	c.3570C>T	c.(3568-3570)CTC>CTT	p.L1190L	KIF4A_uc010nkw.2_Silent_p.L1190L	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	1190	Globular.|Interaction with PRC1.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						CTTTTGACCTCCCAGAGTTGA	0.507													23	2					0	0	1	0	0
IL2RG	3561	broad.mit.edu	37	X	70329078	70329078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:70329078C>T	uc004dyw.1	-	5	771	c.757G>A	c.(757-759)GAG>AAG	p.E253K	CXorf65_uc011mpo.1_5'Flank|CXorf65_uc011mpp.1_5'Flank|IL2RG_uc004dyv.1_Missense_Mutation_p.R14K|IL2RG_uc004dyx.1_Missense_Mutation_p.E63K	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	253	Extracellular (Potential).				immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	CCCATTTTACCTTTTGAAGTA	0.517									Severe_Combined_Immunodeficiency_X-linked				17	13					0	0	1	0	0
MED12	9968	broad.mit.edu	37	X	70346835	70346835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:70346835G>A	uc004dyy.2	+	20	2901	c.2702G>A	c.(2701-2703)AGT>AAT	p.S901N	MED12_uc011mpq.1_Missense_Mutation_p.S901N|MED12_uc004dyz.2_Missense_Mutation_p.S901N|MED12_uc004dza.2_Missense_Mutation_p.S748N|MED12_uc010nla.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	901					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					AATGAACTGAGTGTAGTTGAG	0.537													39	5					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71840658	71840658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:71840658C>T	uc004eax.3	-	19	2355	c.2054G>A	c.(2053-2055)GGG>GAG	p.G685E	PHKA1_uc004eay.3_Missense_Mutation_p.G685E|PHKA1_uc011mqi.1_Intron	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	685					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CCGATCTAGCCCTCCCTTCTG	0.517													21	17					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433164	72433164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:72433164C>T	uc004ebi.2	-	1	1521	c.1165G>A	c.(1165-1167)GAT>AAT	p.D389N	NAP1L2_uc011mqj.1_Missense_Mutation_p.D247N	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	389					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					AGTAAAAAATCATCATTTCCA	0.378													14	11					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433728	72433728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:72433728C>T	uc004ebi.2	-	1	957	c.601G>A	c.(601-603)GAT>AAT	p.D201N	NAP1L2_uc011mqj.1_Missense_Mutation_p.D59N	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	201	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCATAACCATCGTCCTCATCC	0.328													33	9					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73046879	73046879	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73046879C>T	uc004ebn.2	+	1		c.34840C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATGGGCTTTCCATCTTAGTCC	0.488													31	36					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73062560	73062560	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73062560G>A	uc004ebm.1	-	1		c.10029C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TGGGACCAAGGAAAGTGCAAC	0.468													11	16					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73065732	73065732	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73065732G>A	uc004ebm.1	-	1		c.6857C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AACAGGCCAAGAAAAGGGGCC	0.512													28	32					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73066499	73066499	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73066499G>A	uc004ebm.1	-	1		c.6090C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTGCTGGAAGGGAAAAGTGGG	0.473													19	28					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73070995	73070995	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73070995C>T	uc004ebm.1	-	1		c.1594G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CAGCACTGTCCATCCCACCTT	0.502													120	12					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961097	73961097	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73961097G>A	uc004eby.2	-	3	3912	c.3295C>T	c.(3295-3297)CAA>TAA	p.Q1099*		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1099					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ACACCCTCTTGGAACCCCTTT	0.483													28	29					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962772	73962772	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:73962772G>A	uc004eby.2	-	3	2237	c.1620C>T	c.(1618-1620)ATC>ATT	p.I540I		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	540					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGATATATTTGATAATAACAG	0.423													23	2					0	0	1	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74644606	74644606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:74644606C>T	uc004ecg.2	-	8	1095	c.617G>A	c.(616-618)AGT>AAT	p.S206N	ZDHHC15_uc004ech.2_Missense_Mutation_p.S197N|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	206						integral to membrane	zinc ion binding			ovary(2)	2						AGAGCGAACACTGGGTAATTC	0.373													5	0					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004517	75004517	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:75004517G>A	uc004ecj.1	-	1	555	c.370C>T	c.(370-372)CAG>TAG	p.Q124*		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	124	MAGE 1.									ovary(1)|skin(1)	2						TCAGGGAACTGATCTGAGTAC	0.493													6	5					0	0	1	0	0
ATP7A	538	broad.mit.edu	37	X	77245351	77245351	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:77245351C>T	uc004ecx.3	+	4	1393	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S	ATP7A_uc004ecw.2_Silent_p.S411S	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	411	HMA 4.|Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TACGAGTCTCCCTTGCAAATA	0.413													73	6					0	0	1	0	0
ATP7A	538	broad.mit.edu	37	X	77296150	77296150	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:77296150C>T	uc004ecx.3	+	19	3880	c.3720C>T	c.(3718-3720)ATC>ATT	p.I1240I		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	1240	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						AACTGGCTATCCATATTCTGA	0.408													32	29					0	0	1	0	0
TAF9B	51616	broad.mit.edu	37	X	77394419	77394419	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:77394419C>T	uc004eda.2	-	2	125	c.54G>A	c.(52-54)GTG>GTA	p.V18V		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	18					negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						TCTGTGCCATCACCTGTGGAT	0.378													23	22					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913210	77913210	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:77913210G>A	uc004edc.1	-	2	1004	c.708C>T	c.(706-708)TTC>TTT	p.F236F		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	236							nucleic acid binding|zinc ion binding			ovary(1)	1						ATTGCAGGGGGAAATCTGTAG	0.502													21	1					0	0	1	0	0
LPAR4	2846	broad.mit.edu	37	X	78010772	78010772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:78010772C>T	uc010nme.2	+	2	811	c.406C>T	c.(406-408)CGT>TGT	p.R136C		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	136	Cytoplasmic (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TAGTGTGGATCGTTTCCTGGC	0.483													36	45					0	0	1	0	0
LPAR4	2846	broad.mit.edu	37	X	78011029	78011029	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:78011029C>T	uc010nme.2	+	2	1068	c.663C>T	c.(661-663)GTC>GTT	p.V221V		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	221	Helical; Name=5; (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TATTGAATGTCTCTTGCTCTT	0.378													24	1					0	0	1	0	0
P2RY10	27334	broad.mit.edu	37	X	78217036	78217036	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:78217036A>T	uc004ede.2	+	4	1388	c.1019A>T	c.(1018-1020)TAA>TTA	p.*340L	P2RY10_uc004edf.2_Nonstop_Mutation_p.*340L	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	340						integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						ATGATTGGCTAAAATTAAGAT	0.413													45	3					0	0	1	0	0
GPR174	84636	broad.mit.edu	37	X	78427144	78427144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:78427144G>A	uc004edg.1	+	1	676	c.640G>A	c.(640-642)GAT>AAT	p.D214N		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	214	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						ATCACTGCAAGATAAATATCC	0.428										HNSCC(63;0.18)			20	21					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83128092	83128092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:83128092C>T	uc004eei.1	+	4	397	c.376C>T	c.(376-378)CCT>TCT	p.P126S	CYLC1_uc004eeh.1_Missense_Mutation_p.P125S	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	126					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AGGAGGAACACCTTTGAAGAA	0.358													5	3					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83129300	83129300	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:83129300C>T	uc004eei.1	+	4	1605	c.1584C>T	c.(1582-1584)TCC>TCT	p.S528S	CYLC1_uc004eeh.1_Silent_p.S527S	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	528	7.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ATGAATCTTCCAAGACAGGCT	0.353													4	6					0	0	1	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83319409	83319409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:83319409C>T	uc004eej.1	-	22	2191	c.2114G>A	c.(2113-2115)GGA>GAA	p.G705E	RPS6KA6_uc011mqt.1_Missense_Mutation_p.G705E|RPS6KA6_uc011mqu.1_Missense_Mutation_p.G602E	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	705					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AACCATTGCTCCCTAAAGTAA	0.393													11	0					0	0	1	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83360882	83360882	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:83360882G>A	uc004eej.1	-	16	1445	c.1368C>T	c.(1366-1368)ATC>ATT	p.I456I	RPS6KA6_uc011mqt.1_Silent_p.I456I|RPS6KA6_uc011mqu.1_Silent_p.I353I	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	456	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TTTTGTCAATGATCTAAGAAA	0.299													28	1					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84510303	84510303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:84510303C>T	uc004eeo.2	+	4	465	c.118C>T	c.(118-120)CAT>TAT	p.H40Y	ZNF711_uc004eep.2_Missense_Mutation_p.H40Y|ZNF711_uc004eeq.2_Missense_Mutation_p.H40Y	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	40					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CGATGGAGACCATATTGTTGT	0.368													17	19					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84526400	84526400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:84526400C>T	uc004eeo.2	+	9	2199	c.1852C>T	c.(1852-1854)CCT>TCT	p.P618S	ZNF711_uc004eep.2_Missense_Mutation_p.P618S|ZNF711_uc004eeq.2_Missense_Mutation_p.P664S|ZNF711_uc011mqy.1_Missense_Mutation_p.P217S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	618					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TAAGGATTTTCCTCACAAATG	0.423													9	6					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84560888	84560888	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:84560888A>C	uc004eer.2	-	13	1492	c.1346T>G	c.(1345-1347)TTG>TGG	p.L449W	POF1B_uc004ees.2_Missense_Mutation_p.L449W	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	449							actin binding				0						TTTAGCCTGCAACATTGGGCC	0.388													13	25					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84586074	84586074	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:84586074C>T	uc004eer.2	-	7	881	c.735G>A	c.(733-735)CAG>CAA	p.Q245Q	POF1B_uc004ees.2_Silent_p.Q245Q	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	245							actin binding				0						GGCCATCATCCTGAATTATCA	0.348													9	13					0	0	1	0	0
DACH2	117154	broad.mit.edu	37	X	85906113	85906113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:85906113G>A	uc004eew.2	+	4	885	c.715G>A	c.(715-717)GGA>AGA	p.G239R	DACH2_uc004eex.2_Missense_Mutation_p.G226R|DACH2_uc010nmq.2_Missense_Mutation_p.G105R|DACH2_uc011mra.1_Missense_Mutation_p.G72R|DACH2_uc010nmr.2_Missense_Mutation_p.G20R	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						CACTCTTCAGGGAAATGGAAG	0.433													7	0					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86890731	86890731	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:86890731C>T	uc004efb.2	+	9	2063	c.1881C>T	c.(1879-1881)GCC>GCT	p.A627A	KLHL4_uc004efa.2_Silent_p.A627A	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	627	Kelch 5.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGCATGATGCCCCTGCTTCCA	0.413													15	13					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873617	91873617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:91873617C>T	uc004efk.1	+	7	4567	c.3722C>T	c.(3721-3723)TCA>TTA	p.S1241L	PCDH11X_uc004efl.1_Missense_Mutation_p.S1231L|PCDH11X_uc004efo.1_Missense_Mutation_p.S1204L|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.S1233L|PCDH11X_uc004efn.1_Missense_Mutation_p.S1223L	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1241	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GCACAGGCCTCAGCCCTCTGC	0.587													26	40					0	0	1	0	0
DIAPH2	1730	broad.mit.edu	37	X	96354749	96354749	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:96354749G>A	uc004efu.3	+	20	2700	c.2304G>A	c.(2302-2304)AAG>AAA	p.K768K	DIAPH2_uc004eft.3_Silent_p.K768K	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	768	FH2.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						CAGAGCTTAAGAATGAATATG	0.378													9	1					0	0	1	0	0
LOC442459	442459	broad.mit.edu	37	X	98975180	98975180	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:98975180C>T	uc011mrd.1	-	8		c.1163G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						CCTCTTTCTCCAGTATAATCT	0.433													6	11					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99551703	99551703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:99551703C>T	uc010nmz.2	-	6	4695	c.3019G>A	c.(3019-3021)GAC>AAC	p.D1007N	PCDH19_uc004efw.3_Missense_Mutation_p.D959N|PCDH19_uc004efx.3_Missense_Mutation_p.D960N	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1007	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						GGGCCGCAGTCGTCATAAGCC	0.572													8	18					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99551716	99551716	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:99551716G>A	uc010nmz.2	-	6	4682	c.3006C>T	c.(3004-3006)GTC>GTT	p.V1002V	PCDH19_uc004efw.3_Silent_p.V954V|PCDH19_uc004efx.3_Silent_p.V955V	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1002	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CATAAGCCTCGACATCAGCAG	0.582													17	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	100143226	100143227	+	RNA	DNP	GT	TA	TA			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:100143226_100143227GT>TA	uc010nnf.2	-	1		c.391_392AC>TA			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		CTTAGCTGATGTTTTTCAGTGT	0.376													8	1					0	0	1	0	0
TAF7L	54457	broad.mit.edu	37	X	100547832	100547833	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:100547832_100547833CC>TT	uc004ehb.2	-	1	213_214	c.201_202GG>AA	c.(199-204)GCGGAC>GCAAAC	p.D68N	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	68					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						GCGCTGCTGTCCGCATCCGTTT	0.579													38	35					0	0	1	0	0
NXF2B	728343	broad.mit.edu	37	X	101581400	101581400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:101581400C>T	uc004eiv.3	+	34	3725	c.1853C>T	c.(1852-1854)CCC>CTC	p.P618L	NXF2B_uc004eiu.3_Missense_Mutation_p.P618L|NXF2B_uc004eiw.3_3'UTR|NXF2_uc004eix.3_Missense_Mutation_p.P618L	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	618	TAP-C.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						GGCAAGATCCCCGCAGAGGCC	0.507													16	88					0	0	1	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910587	101910587	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:101910587C>T	uc004ejj.3	+	5	2547	c.1746C>T	c.(1744-1746)TCC>TCT	p.S582S	GPRASP1_uc004eji.3_Silent_p.S582S|GPRASP1_uc010nod.2_Silent_p.S582S	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	582	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						TATTCGGGTCCTGGTTTTGGG	0.507													47	43					0	0	1	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971346	101971346	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:101971346C>G	uc004ejk.2	+	4	2883	c.1549C>G	c.(1549-1551)CCC>GCC	p.P517A	GPRASP2_uc004ejl.2_Missense_Mutation_p.P517A|GPRASP2_uc004ejm.2_Missense_Mutation_p.P517A|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	517						cytoplasm	protein binding			ovary(1)	1						CTTTGGAATTCCCGAAGAGGC	0.517													3	66					0	0	1	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971512	101971512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:101971512G>A	uc004ejk.2	+	4	3049	c.1715G>A	c.(1714-1716)AGG>AAG	p.R572K	GPRASP2_uc004ejl.2_Missense_Mutation_p.R572K|GPRASP2_uc004ejm.2_Missense_Mutation_p.R572K|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	572						cytoplasm	protein binding			ovary(1)	1						GAGCATCTTAGGGCCAGGGAG	0.463													26	41					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102339393	102339393	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:102339393C>T	uc004eju.2	-	3	299	c.228G>A	c.(226-228)CGG>CGA	p.R76R	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Silent_p.R76R|NXF3_uc011mrx.1_5'UTR	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	76						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AACTGCCTTTCCGATTATAGG	0.438													24	31					0	0	1	0	0
GLRA4	441509	broad.mit.edu	37	X	102974111	102974111	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:102974111G>A	uc011mse.1	-	7	1228	c.807C>T	c.(805-807)ATC>ATT	p.I269I	GLRA4_uc010nou.2_Silent_p.I269I	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	269	Helical; (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						ACAGGATGACGATGAGTAGGC	0.557													48	54					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450679	105450679	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:105450679G>A	uc004emf.1	+	4	1903	c.1254G>A	c.(1252-1254)AGG>AGA	p.R418R	MUM1L1_uc004emg.1_Silent_p.R418R	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	418	PWWP.									ovary(2)|pancreas(1)|skin(1)	4						GAAAAGAGAGGAAAGCAAGTG	0.333													20	0					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107821574	107821574	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:107821574G>A	uc004enz.1	+	13	943	c.741G>A	c.(739-741)CAG>CAA	p.Q247Q	COL4A5_uc011mso.1_Silent_p.Q247Q	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	247	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCAGTGAACAGAAAAGACCAA	0.393									Alport_syndrome_with_Diffuse_Leiomyomatosis				73	4					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107863562	107863562	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:107863562A>G	uc004enz.1	+	31	2785	c.2583A>G	c.(2581-2583)GAA>GAG	p.E861E	COL4A5_uc011mso.1_Silent_p.E861E|COL4A5_uc004eob.1_Silent_p.E469E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	861	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCCCAGGTGAAAGAGGCAGTC	0.502									Alport_syndrome_with_Diffuse_Leiomyomatosis				48	4					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107911653	107911653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:107911653C>T	uc004enz.1	+	41	3911	c.3709C>T	c.(3709-3711)CCA>TCA	p.P1237S	COL4A5_uc011mso.1_Missense_Mutation_p.P1237S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1237	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GCAGGGTCCCCCAGGCCCTCC	0.602									Alport_syndrome_with_Diffuse_Leiomyomatosis				19	4					0	0	1	0	0
IRS4	8471	broad.mit.edu	37	X	107978307	107978307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:107978307C>T	uc004eoc.2	-	1	1301	c.1268G>A	c.(1267-1269)AGG>AAG	p.R423K		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	423						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						AACCGCTCTCCTTGACCTGCG	0.637													21	24					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111155590	111155590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:111155590C>T	uc004epl.1	-	3	1748	c.829G>A	c.(829-831)GAA>AAA	p.E277K	TRPC5_uc004epm.1_Missense_Mutation_p.E277K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	277	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TCAAGCTCTTCACTGTGGTCA	0.522													43	58					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117033355	117033355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:117033355C>T	uc004eql.2	-	7	1546	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E	KLHL13_uc004eqk.2_Missense_Mutation_p.G444E|KLHL13_uc011mtn.1_Missense_Mutation_p.G335E|KLHL13_uc011mto.1_Missense_Mutation_p.G489E|KLHL13_uc011mtp.1_Missense_Mutation_p.G497E|KLHL13_uc004eqm.2_Missense_Mutation_p.G444E|KLHL13_uc011mtq.1_Missense_Mutation_p.G479E	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	495	Kelch 4.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						ATGAGTAATTCCTCCTAAAGA	0.358													89	12					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117035835	117035835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:117035835G>A	uc004eql.2	-	6	1503	c.1441C>T	c.(1441-1443)CAT>TAT	p.H481Y	KLHL13_uc004eqk.2_Missense_Mutation_p.H430Y|KLHL13_uc011mtn.1_Missense_Mutation_p.H321Y|KLHL13_uc011mto.1_Missense_Mutation_p.H475Y|KLHL13_uc011mtp.1_Missense_Mutation_p.H483Y|KLHL13_uc004eqm.2_Missense_Mutation_p.H430Y|KLHL13_uc011mtq.1_Missense_Mutation_p.H465Y	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	481	Kelch 3.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GTTCCAGCATGGCCATAGTGG	0.333													19	22					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117053534	117053534	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:117053534G>A	uc004eql.2	-	4	582	c.520C>T	c.(520-522)CTA>TTA	p.L174L	KLHL13_uc004eqk.2_Silent_p.L123L|KLHL13_uc011mtn.1_Silent_p.L14L|KLHL13_uc011mto.1_Silent_p.L168L|KLHL13_uc011mtp.1_Silent_p.L176L|KLHL13_uc004eqm.2_Silent_p.L123L|KLHL13_uc011mtq.1_Silent_p.L158L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	174					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						AGAATCTGTAGGAAACTGGCA	0.388													54	2					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221312	118221312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:118221312G>A	uc004era.3	-	11	3881	c.3881C>T	c.(3880-3882)CCC>CTC	p.P1294L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1294										ovary(4)|skin(1)	5						AAGCTGCCTGGGAGACAGCTG	0.488													36	40					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120009367	120009367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:120009367C>T	uc011muc.1	-	1	413	c.158G>A	c.(157-159)GGA>GAA	p.G53E		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	53											0						CCCTGCGACTCCGACCACCTC	0.741													45	4					0	0	1	0	0
SH2D1A	4068	broad.mit.edu	37	X	123504071	123504071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:123504071C>T	uc004euf.3	+	3	592	c.247C>T	c.(247-249)CTC>TTC	p.L83F	SH2D1A_uc004euh.3_Missense_Mutation_p.L83F|SH2D1A_uc004eug.3_Intron|SH2D1A_uc010nqw.2_Intron|SH2D1A_uc004eui.3_RNA|SH2D1A_uc010nqx.2_Intron	NM_002351	NP_002342	O60880	SH21A_HUMAN	SH2 domain protein 1A isoform 1	83	SH2.				cell-cell signaling|cellular defense response	cytoplasm	SH3/SH2 adaptor activity				0						AATAAAAAATCTCATTTCAGC	0.373									X-linked_Lymphoproliferative_syndrome				54	4					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123518351	123518351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:123518351C>T	uc004euj.2	-	29	6473	c.6409G>A	c.(6409-6411)GAC>AAC	p.D2137N	ODZ1_uc011muj.1_Missense_Mutation_p.D2143N|ODZ1_uc010nqy.2_Missense_Mutation_p.D2144N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2137	Extracellular (Potential).			MVICD -> HGNMC (in Ref. 1; AAF04723).	immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACCCTTATGTCACATATTACC	0.403													43	40					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123556262	123556262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:123556262C>T	uc004euj.2	-	23	4374	c.4310G>A	c.(4309-4311)GGG>GAG	p.G1437E	ODZ1_uc011muj.1_Missense_Mutation_p.G1443E|ODZ1_uc010nqy.2_Missense_Mutation_p.G1444E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1437	NHL 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAAGAGCAGCCCGCTGTGGGA	0.532													26	49					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123805592	123805592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:123805592G>A	uc004euj.2	-	6	1173	c.1109C>T	c.(1108-1110)TCC>TTC	p.S370F	ODZ1_uc011muj.1_Missense_Mutation_p.S369F|ODZ1_uc010nqy.2_Missense_Mutation_p.S370F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	370	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGTGTCCATGGACTCGGTCCC	0.428													35	35					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	124097545	124097545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:124097545C>T	uc004euj.2	-	1	122	c.58G>A	c.(58-60)GAT>AAT	p.D20N	ODZ1_uc011muj.1_Missense_Mutation_p.D20N|ODZ1_uc010nqy.2_Missense_Mutation_p.D20N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	20	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TAAGCTAGATCCATTTCATGC	0.443													47	64					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685552	125685552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:125685552C>T	uc004eul.2	-	1	1291	c.1040G>A	c.(1039-1041)CGA>CAA	p.R347Q		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	347										skin(3)|ovary(1)	4						GCCACCCTCTCGAGAACACAG	0.612													13	22					0	0	1	0	0
ACTRT1	139741	broad.mit.edu	37	X	127186075	127186075	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:127186075G>A	uc004eum.2	-	1	308	c.111C>T	c.(109-111)TCC>TCT	p.S37S		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	37						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						GTCCCAAGACGGAGCTGATGA	0.468													12	22					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129159108	129159108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:129159108C>T	uc004evb.1	+	7	3946	c.3832C>T	c.(3832-3834)CGC>TGC	p.R1278C	BCORL1_uc010nrd.1_Intron|BCORL1_uc004evc.1_Missense_Mutation_p.R40C	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1278					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CACCCAGTATCGCAGCCACCA	0.607													43	4					0	0	1	0	0
FAM45B	55855	broad.mit.edu	37	X	129629405	129629405	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:129629405C>T	uc010nrh.2	+	1	491	c.273C>T	c.(271-273)GTC>GTT	p.V91V	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		TTTCTATTGTCCTGACCGCCA	0.378													31	44					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130222720	130222720	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:130222720G>A	uc004evz.2	+	12	1950	c.1605G>A	c.(1603-1605)GAG>GAA	p.E535E	ARHGAP36_uc004ewa.2_Silent_p.E523E|ARHGAP36_uc004ewb.2_Silent_p.E504E|ARHGAP36_uc004ewc.2_Silent_p.E399E	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	535					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TGCCCCGGGAGAAGGAGGCCA	0.572													21	22					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130408835	130408835	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:130408835G>A	uc004ewd.2	-	18	3727	c.3489C>T	c.(3487-3489)CCC>CCT	p.P1163P	IGSF1_uc004ewe.3_Silent_p.P1157P|IGSF1_uc004ewf.2_Silent_p.P1143P	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1163	Extracellular (Potential).|Ig-like C2-type 12.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CTGACAGAGAGGGTTTAGGGG	0.478													98	6					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130415673	130415673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:130415673G>A	uc004ewd.2	-	8	1730	c.1492C>T	c.(1492-1494)CGC>TGC	p.R498C	IGSF1_uc004ewe.3_Missense_Mutation_p.R487C|IGSF1_uc004ewf.2_Missense_Mutation_p.R478C	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	498	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGCTCACTGCGATGTGACCAG	0.527													18	26					0	0	1	0	0
HS6ST2	90161	broad.mit.edu	37	X	131762736	131762736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:131762736C>T	uc011mve.1	-	4	1749	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K	HS6ST2_uc011mvb.1_Missense_Mutation_p.E339K|HS6ST2_uc011mvc.1_Missense_Mutation_p.E299K|HS6ST2_uc011mvd.1_Missense_Mutation_p.E485K|HS6ST2_uc011mva.1_Missense_Mutation_p.E171K	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	445	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					AAGGTTTTCTCAAACAGATAT	0.423													29	38					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132161550	132161550	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:132161550C>T	uc010nrm.1	-	6	1169	c.699G>A	c.(697-699)TTG>TTA	p.L233L	USP26_uc011mvf.1_Silent_p.L233L	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	233					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ATTCACATTCCAATTTCTTAT	0.373													14	14					0	0	1	0	0
TFDP3	51270	broad.mit.edu	37	X	132351760	132351760	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:132351760G>A	uc004exb.1	-	1	617	c.528C>T	c.(526-528)ATC>ATT	p.I176I		NM_016521	NP_057605	Q5H9I0	TFDP3_HUMAN	transcription factor Dp family, member 3	176	Potential.|Involved in negatively regulating E2F activity.|DEF box (By similarity).					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCCTGGAGATGATATTCATGG	0.478													20	3					0	0	1	0	0
MIR363	574031	broad.mit.edu	37	X	133303441	133303441	+	RNA	SNP	T	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:133303441T>A	hsa-mir-363|MI0000764	-			c.42T>A																				0						ATTTTTCTCCTATGATACTCA	0.383													17	19					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135429841	135429841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:135429841G>A	uc004ezu.1	+	6	4267	c.3976G>A	c.(3976-3978)GGA>AGA	p.G1326R	GPR112_uc010nsb.1_Missense_Mutation_p.G1121R|GPR112_uc010nsc.1_Missense_Mutation_p.G1093R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1326	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCCCTCTGATGGAAATTTGGC	0.438													44	8					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135432445	135432445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:135432445C>T	uc004ezu.1	+	6	6871	c.6580C>T	c.(6580-6582)CCA>TCA	p.P2194S	GPR112_uc010nsb.1_Missense_Mutation_p.P1989S|GPR112_uc010nsc.1_Missense_Mutation_p.P1961S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2194	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGCCTCATTTCCACTCATATC	0.428													68	5					0	0	1	0	0
MCF2	4168	broad.mit.edu	37	X	138701769	138701769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:138701769C>T	uc004fau.2	-	7	1078	c.784G>A	c.(784-786)GAA>AAA	p.E262K	MCF2_uc004fav.2_Missense_Mutation_p.E262K|MCF2_uc011mwl.1_Missense_Mutation_p.E223K|MCF2_uc010nsh.1_Missense_Mutation_p.E262K|MCF2_uc011mwm.1_Missense_Mutation_p.E223K|MCF2_uc011mwn.1_Missense_Mutation_p.E407K|MCF2_uc004faw.2_Missense_Mutation_p.E322K|MCF2_uc011mwo.1_Missense_Mutation_p.E322K	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	262	Spectrin.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TCTAAGTTTTCCAATTTTTTT	0.318													8	11					0	0	1	0	0
ATP11C	286410	broad.mit.edu	37	X	138823170	138823170	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:138823170G>A	uc004faz.2	-	27	3222	c.3123C>T	c.(3121-3123)TTC>TTT	p.F1041F	ATP11C_uc004fax.2_Silent_p.F249F|ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Silent_p.F1041F	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	1041	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					CTCCCCAGAAGAATGAGAAAA	0.363													30	3					0	0	1	0	0
SOX3	6658	broad.mit.edu	37	X	139585906	139585906	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:139585906C>T	uc004fbd.1	-	1	1320	c.1320G>A	c.(1318-1320)ACG>ACA	p.T440T		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	440					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					TCAGCGGCACCGTTCCGTTGA	0.592													5	8					0	0	1	0	0
SPANXC	64663	broad.mit.edu	37	X	140335717	140335717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140335717C>T	uc004fbk.2	-	2	283	c.227G>A	c.(226-228)AGA>AAA	p.R76K	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	76						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					GGGGTTGATTCTGTTCTCTCG	0.463													65	45					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140984916	140984916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140984916G>A	uc011mwp.1	+	7	1372	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	MAGEC3_uc004fbs.2_Missense_Mutation_p.E160K|MAGEC3_uc010nsj.2_Missense_Mutation_p.E160K	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	458	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCCCTGGATGAAAAGGTGGC	0.483													24	30					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985153	140985153	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140985153C>T	uc011mwp.1	+	7	1609	c.1609C>T	c.(1609-1611)CTG>TTG	p.L537L	MAGEC3_uc004fbs.2_Silent_p.L239L|MAGEC3_uc010nsj.2_Silent_p.L239L	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	537	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGGAAGCCTGATTGATGA	0.473													68	59					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993437	140993437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140993437C>T	uc004fbt.2	+	4	533	c.247C>T	c.(247-249)CCC>TCC	p.P83S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	83							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAGATTCCCCAGAGTTC	0.572										HNSCC(15;0.026)			33	41					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995859	140995859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140995859C>T	uc004fbt.2	+	4	2955	c.2669C>T	c.(2668-2670)TCC>TTC	p.S890F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	890							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGAGTGATTCCTTGACAGAC	0.478										HNSCC(15;0.026)			108	84					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996083	140996083	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140996083C>T	uc004fbt.2	+	4	3179	c.2893C>T	c.(2893-2895)CTG>TTG	p.L965L	MAGEC1_uc010nsl.1_Silent_p.L32L	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	965	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGGCATTTCCCTGAGAGAAGT	0.498										HNSCC(15;0.026)			78	56					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996136	140996136	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140996136C>T	uc004fbt.2	+	4	3232	c.2946C>T	c.(2944-2946)CTC>CTT	p.L982L	MAGEC1_uc010nsl.1_Silent_p.L49L	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	982	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CATTAGACCTCACCTCTGAGG	0.473										HNSCC(15;0.026)			110	3					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996313	140996313	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:140996313G>A	uc004fbt.2	+	4	3409	c.3123G>A	c.(3121-3123)AGG>AGA	p.R1041R	MAGEC1_uc010nsl.1_Silent_p.R108R	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1041	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGCCCAGGGAGCTCCTCA	0.557										HNSCC(15;0.026)			39	43					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717442	142717442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:142717442C>T	uc004fbx.2	-	2	1859	c.1483G>A	c.(1483-1485)GGA>AGA	p.G495R	SLITRK4_uc004fby.2_Missense_Mutation_p.G495R	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	495	Extracellular (Potential).|LRR 11.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AAGGGTGCTCCGGAAAAGATG	0.433													66	37					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718346	142718346	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:142718346G>A	uc004fbx.2	-	2	955	c.579C>T	c.(577-579)CTC>CTT	p.L193L	SLITRK4_uc004fby.2_Silent_p.L193L	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	193	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CGATATAAGGGAGCTTCTGGA	0.413													17	32					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795358	142795358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:142795358C>T	uc004fbz.2	-	2	1074	c.320G>A	c.(319-321)GGA>GAA	p.G107E		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	107										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTGTGAAGATCCTTCAGATGA	0.527													13	288					0	0	1	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967434	142967434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:142967434C>T	uc004fca.2	+	1	262	c.232C>T	c.(232-234)CAT>TAT	p.H78Y		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	78							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					CAAAATTTATCATCCAAATGT	0.428													58	4					0	0	1	0	0
FMR1NB	158521	broad.mit.edu	37	X	147090223	147090223	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:147090223C>T	uc004fcm.2	+	4	698	c.624C>T	c.(622-624)TTC>TTT	p.F208F		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	208	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCTCTCTTTTCTGGAGGAGGT	0.378													43	4					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148069078	148069078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:148069078G>A	uc004fcp.2	+	20	4284	c.3805G>A	c.(3805-3807)GAA>AAA	p.E1269K	AFF2_uc004fcq.2_Missense_Mutation_p.E1259K|AFF2_uc004fcr.2_Missense_Mutation_p.E1230K|AFF2_uc011mxb.1_Missense_Mutation_p.E1234K|AFF2_uc004fcs.2_Missense_Mutation_p.E1234K|AFF2_uc011mxc.1_Missense_Mutation_p.E910K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1269					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ACTGACAAGAGAAAACAAAGG	0.468													62	2					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150817138	150817138	+	Silent	SNP	A	G	G			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:150817138A>G	uc004fev.3	+	9	1013	c.681A>G	c.(679-681)GAA>GAG	p.E227E		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	227						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGTACGTTGAACCCgctgctg	0.353													68	3					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150868590	150868590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:150868590G>A	uc004few.1	+	3	520	c.130G>A	c.(130-132)GAG>AAG	p.E44K		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	44	Gla.|Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCAGCTACGAGGAGGTCAA	0.552													47	6					0	0	1	0	0
CNGA2	1260	broad.mit.edu	37	X	150911719	150911719	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:150911719C>T	uc004fey.1	+	7	968	c.744C>T	c.(742-744)AAC>AAT	p.N248N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	248	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCGCTTCAACCGCCTGCTGC	0.532													58	7					0	0	1	0	0
MIR452	574412	broad.mit.edu	37	X	151128157	151128157	+	RNA	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:151128157C>T	hsa-mir-452|MI0001733	-			c.28C>T			GABRE_uc004ffi.2_Intron|GABRE_uc011myd.1_Intron|GABRE_uc011mye.1_Intron|MIR224_hsa-mir-224|MI0000301_5'Flank																	0						GTCTCAGTTTCCTCTGCAAAC	0.423													66	7					0	0	1	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283933	151283933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:151283933C>T	uc004ffj.2	-	3	285	c.80G>A	c.(79-81)GGT>GAT	p.G27D		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	27	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGCCTGCACACCCACCAGGCC	0.627													35	20					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900372	151900372	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:151900372G>A	uc010ntp.2	-	3	783	c.429C>T	c.(427-429)TTC>TTT	p.F143F	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.F143F|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	143	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGAAGTCCTGGAAATTTCTGA	0.507													64	44					0	0	1	0	0
PNMA3	29944	broad.mit.edu	37	X	152226784	152226784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:152226784C>T	uc004fhc.2	+	2	1708	c.1372C>T	c.(1372-1374)CCC>TCC	p.P458S	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	458					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGAGCCATCCCAAGTCCAA	0.537													27	60					0	0	1	0	0
SLC6A8	6535	broad.mit.edu	37	X	152959618	152959618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:152959618C>T	uc004fib.3	+	9	1566	c.1288C>T	c.(1288-1290)CTC>TTC	p.L430F	SLC6A8_uc004fic.3_Missense_Mutation_p.L420F|SLC6A8_uc011myx.1_Missense_Mutation_p.L315F|SLC6A8_uc010nuj.2_RNA	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	430	Cytoplasmic (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	CACCGGCCTCCTCGACCTCCT	0.622													53	2					0	0	1	0	0
IDH3G	3421	broad.mit.edu	37	X	153055703	153055703	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:153055703G>A	uc004fip.2	-	4	366	c.180C>T	c.(178-180)ATC>ATT	p.I60I	IDH3G_uc004fio.2_Silent_p.I2I|IDH3G_uc004fiq.2_Silent_p.I60I|IDH3G_uc010num.2_Silent_p.I2I|IDH3G_uc004fir.2_Silent_p.I2I|IDH3G_uc004fit.1_Silent_p.I60I|IDH3G_uc004fis.2_Silent_p.I2I|IDH3G_uc004fiu.2_5'Flank	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	60	NAD (Potential).				carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	CATCCCCTGGGATCATGGTCA	0.657													39	2					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153130594	153130594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:153130594G>A	uc004fjb.2	-	21	2929	c.2821C>T	c.(2821-2823)CCA>TCA	p.P941S	L1CAM_uc004fjc.2_Missense_Mutation_p.P941S|L1CAM_uc010nuo.2_Missense_Mutation_p.P936S	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	941	Extracellular (Potential).|Fibronectin type-III 4.		P -> L (in HSAS and MASA).|Missing (in HSAS).		axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGGCTGAGTGGGGGCTGCCAG	0.701													11	7					0	0	1	0	0
TMEM187	8269	broad.mit.edu	37	X	153248286	153248286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:153248286G>A	uc004fjq.2	+	2	1307	c.773G>A	c.(772-774)GGG>GAG	p.G258E	hsa-mir-3202-2|MI0014253_5'Flank	NM_003492	NP_003483	Q14656	TM187_HUMAN	transmembrane protein 187	258						integral to membrane|transport vesicle					0	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCTCTGGCGGGAAGACGCGT	0.537													13	29					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153593319	153593319	+	Silent	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:153593319G>A	uc004fkk.2	-	12	1947	c.1698C>T	c.(1696-1698)TTC>TTT	p.F566F	FLNA_uc010nuu.1_Silent_p.F566F	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	566	Filamin 3.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCTTCACTTCGAAGGGACTGC	0.637													93	9					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153696180	153696180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:153696180C>T	uc004flm.2	+	21	3829	c.3656C>T	c.(3655-3657)CCG>CTG	p.P1219L		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1219	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTGACCCTACCGGCCATGATG	0.692													31	1					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154157412	154157412	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrX:154157412C>T	uc004fmt.2	-	14	4824	c.4653G>A	c.(4651-4653)GCG>GCA	p.A1551A		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1551	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TCCACTTAATCGCTCCCTCTG	0.483													42	70					0	0	1	0	0
ZFY	7544	broad.mit.edu	37	Y	2847345	2847345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:2847345C>T	uc004fqj.2	+	8	2038	c.1717C>T	c.(1717-1719)CAA>TAA	p.Q573*	ZFY_uc011nan.1_Nonsense_Mutation_p.Q382*|ZFY_uc010nwe.2_Nonsense_Mutation_p.Q496*	NM_003411	NP_003402	P08048	ZFY_HUMAN	zinc finger protein, Y-linked isoform 1	573	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGCCATACCAATGCCAGTA	0.423													16	2					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	5605784	5605784	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:5605784G>A	uc004fqo.2	+	5	4558	c.3824G>A	c.(3823-3825)TGG>TAG	p.W1275*		NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1275	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CAGCAAGGTTGGGTGCAAGGT	0.493													67	102					0	0	1	0	0
TSPY4	728395	broad.mit.edu	37	Y	9195492	9195492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:9195492G>A	uc004frr.1	+	1	87	c.41G>A	c.(40-42)AGG>AAG	p.R14K	FAM197Y2_uc004frp.1_Intron|TSPY4_uc004frq.1_Missense_Mutation_p.R14K	NM_001077697	NP_001071165	P0CW01	TSPYA_HUMAN	testis specific protein, Y-linked 3	14					cell differentiation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus					0						GTGCCAGAGAGGCTGCGGCAG	0.706													6	35					0	0	1	0	0
USP9Y	8287	broad.mit.edu	37	Y	14902403	14902403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:14902403C>T	uc004fst.1	+	25	4570	c.3625C>T	c.(3625-3627)CCC>TCC	p.P1209S	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	1209					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CATTCCTAATCCCTCATCCGA	0.378													19	21					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16734009	16734009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:16734009C>T	uc004ftg.2	+	2	262	c.10C>T	c.(10-12)CCC>TCC	p.P4S	NLGN4Y_uc004fte.2_Intron|NLGN4Y_uc011nas.1_Missense_Mutation_p.P4S|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Missense_Mutation_p.P4S|NLGN4Y_uc004fti.3_Missense_Mutation_p.P4S	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	4					brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CATGTTGCGTCCCCAGGGACT	0.488													10	5					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16734109	16734109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:16734109C>T	uc004ftg.2	+	2	362	c.110C>T	c.(109-111)ACC>ATC	p.T37I	NLGN4Y_uc004fte.2_Intron|NLGN4Y_uc011nas.1_Missense_Mutation_p.T37I|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Missense_Mutation_p.T37I|NLGN4Y_uc004fti.3_Missense_Mutation_p.T37I	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	37					brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						ATCAAGTTCACCCTCATTGAC	0.468													14	23					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16952329	16952329	+	Silent	SNP	C	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:16952329C>T	uc004ftg.2	+	6	1890	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	NLGN4Y_uc004fte.2_Silent_p.F378F|NLGN4Y_uc011nas.1_Silent_p.F566F|NLGN4Y_uc004ftf.2_Silent_p.F239F|NLGN4Y_uc004fth.2_Silent_p.F546F	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	546	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						ATACCAAGTTCATTCATACAA	0.408													27	33					0	0	1	0	0
RBMY2EP	159125	broad.mit.edu	37	Y	23562895	23562895	+	RNA	SNP	G	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chrY:23562895G>A	uc004fun.1	-	2		c.104C>T				NR_001574				Homo sapiens RNA binding motif protein, Y-linked, family 2, member E pseudogene (RBMY2EP), non-coding RNA.												0						TTGCTGGTTCGATCCTTTATC	0.338													5	13					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181680102	181680103	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr1:181680102_181680103delAG	uc001gow.2	+	8	1233_1234	c.1068_1069delAG	c.(1066-1071)AAAGAGfs	p.K356fs	CACNA1E_uc009wxs.2_Frame_Shift_Del_p.K263fs	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	356_357	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AATTTGCCAAAGAGAGAGAGAG	0.510													7	139	---	---	---	---					
FAM178A	55719	broad.mit.edu	37	10	102684495	102684497	+	In_Frame_Del	DEL	AGG	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr10:102684495_102684497delAGG	uc001krt.3	+	5	2279_2281	c.1737_1739delAGG	c.(1735-1740)GAAGGA>GAA	p.G580del	FAM178A_uc001krr.1_In_Frame_Del_p.G580del|FAM178A_uc001krs.2_In_Frame_Del_p.G580del|FAM178A_uc001kru.1_In_Frame_Del_p.G515del	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	580											0						CCCCTTCAGAAGGAGAGAGTTCA	0.458													30	58	---	---	---	---					
OR5B12	390191	broad.mit.edu	37	11	58207292	58207293	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr11:58207292_58207293insA	uc010rkh.1	-	1	332_333	c.332_333insT	c.(331-333)TTCfs	p.F111fs		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ATGCCAGGAGGAAACTTTCTGC	0.441													46	47	---	---	---	---					
RASSF8	11228	broad.mit.edu	37	12	26218119	26218119	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:26218119delG	uc001rgx.2	+	3	1013	c.792delG	c.(790-792)CAGfs	p.Q264fs	RASSF8_uc001rgy.2_Frame_Shift_Del_p.Q264fs|RASSF8_uc001rgz.2_Frame_Shift_Del_p.Q264fs|RASSF8_uc009zjd.1_Frame_Shift_Del_p.Q264fs|RASSF8_uc009zje.1_Frame_Shift_Del_p.Q264fs	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	264	Glu-rich.				signal transduction						0	Colorectal(261;0.0847)					ATTTGGCACAGATCCGGACTA	0.383													61	98	---	---	---	---					
PLXNC1	10154	broad.mit.edu	37	12	94620392	94620392	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr12:94620392delG	uc001tdc.2	+	8	2051	c.1802delG	c.(1801-1803)TGCfs	p.C601fs		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	601	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TGCCCAGCATGCGTAGAAACT	0.463													68	4	---	---	---	---					
FAM124A	220108	broad.mit.edu	37	13	51825779	51825780	+	Frame_Shift_Ins	INS	-	C	C	rs79312598		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr13:51825779_51825780insC	uc001vfg.1	+	3	407_408	c.276_277insC	c.(274-279)AAGCCCfs	p.K92fs	FAM124A_uc001vfe.2_Frame_Shift_Ins_p.K92fs|FAM124A_uc001vff.1_Frame_Shift_Ins_p.K128fs	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	92_93										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		GGCGGCGGAAGCCCCCCAAGGG	0.703													4	4	---	---	---	---					
ABCA5	23461	broad.mit.edu	37	17	67285330	67285330	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:67285330delA	uc002jif.2	-	13	3108	c.1890delT	c.(1888-1890)CTTfs	p.L630fs	ABCA5_uc002jic.2_5'Flank|ABCA5_uc002jid.2_5'Flank|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Frame_Shift_Del_p.L630fs|ABCA5_uc002jih.2_Frame_Shift_Del_p.L630fs|ABCA5_uc010dfe.2_Frame_Shift_Del_p.L630fs	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	630	ABC transporter 1.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TTGGGTTCCCAAGAACAGCAA	0.239													21	62	---	---	---	---					
CSNK1D	1453	broad.mit.edu	37	17	80210425	80210429	+	Frame_Shift_Del	DEL	GTTGA	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr17:80210425_80210429delGTTGA	uc002kej.2	-	5	933_937	c.617_621delTCAAC	c.(616-621)TTCAACfs	p.F206fs	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Frame_Shift_Del_p.F206fs|CSNK1D_uc002kei.2_Frame_Shift_Del_p.F206fs|CSNK1D_uc010wvj.1_Frame_Shift_Del_p.F3fs|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_Frame_Shift_Del_p.F71fs|CSNK1D_uc010dim.1_Frame_Shift_Del_p.F3fs	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	206_207	Protein kinase.				circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			GAGAGCCCAGGTTGAAGTACATTAG	0.512													44	37	---	---	---	---					
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224798	10224798	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:10224798delT	uc002mna.2	+	13	1769	c.1769delT	c.(1768-1770)CTGfs	p.L590fs	PPAN-P2RY11_uc010xla.1_3'UTR|P2RY11_uc002mnc.2_Frame_Shift_Del_p.L170fs	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:Variant_position_missing_in_Q9NQ55_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			TTCTCCCACCTGAAGAGGCCG	0.711													10	33	---	---	---	---					
AKT2	208	broad.mit.edu	37	19	40741920	40741920	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr19:40741920delT	uc002onf.2	-	11	1314	c.1052delA	c.(1051-1053)TACfs	p.Y351fs	AKT2_uc010egs.2_Frame_Shift_Del_p.Y308fs|AKT2_uc010egt.2_Frame_Shift_Del_p.Y289fs|AKT2_uc010xvj.1_Frame_Shift_Del_p.Y289fs|AKT2_uc010egu.1_Frame_Shift_Del_p.Y289fs|AKT2_uc002one.2_Frame_Shift_Del_p.Y247fs	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	351	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			GTCCTGGTTGTAGAAGGGCAG	0.637			A		ovarian|pancreatic 								96	403	---	---	---	---					
ASTL	431705	broad.mit.edu	37	2	96799172	96799172	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr2:96799172delG	uc010yui.1	-	5	447	c.447delC	c.(445-447)CCCfs	p.P149fs		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	149					proteolysis		metalloendopeptidase activity|zinc ion binding				0						ACCCATACATGGGGATGATGG	0.537													32	43	---	---	---	---					
BRPF1	7862	broad.mit.edu	37	3	9781064	9781071	+	Frame_Shift_Del	DEL	TGTGGATT	-	-	rs150922097		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:9781064_9781071delTGTGGATT	uc003bse.2	+	3	1380_1387	c.981_988delTGTGGATT	c.(979-990)GCTGTGGATTGTfs	p.A327fs	BRPF1_uc003bsf.2_Frame_Shift_Del_p.A327fs|BRPF1_uc003bsg.2_Frame_Shift_Del_p.A327fs|BRPF1_uc011ati.1_Frame_Shift_Del_p.A327fs	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	327_330					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					CCTCTCGTGCTGTGGATTGTGCCCTGTG	0.630													18	100	---	---	---	---					
PBRM1	55193	broad.mit.edu	37	3	52595893	52595900	+	Frame_Shift_Del	DEL	ATCTCACT	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr3:52595893_52595900delATCTCACT	uc003des.2	-	25	4183_4190	c.4171_4178delAGTGAGAT	c.(4171-4179)AGTGAGATGfs	p.S1391fs	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Frame_Shift_Del_p.S1391fs|PBRM1_uc003der.2_Frame_Shift_Del_p.S1359fs|PBRM1_uc003det.2_Frame_Shift_Del_p.S1406fs|PBRM1_uc003deu.2_Frame_Shift_Del_p.S1406fs|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Frame_Shift_Del_p.S1391fs|PBRM1_uc010hmk.1_Frame_Shift_Del_p.S1366fs|PBRM1_uc003dey.2_Frame_Shift_Del_p.S1339fs|PBRM1_uc003dez.1_Frame_Shift_Del_p.S1390fs	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1391_1393	HMG box.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CACAGCCCTCATCTCACTGCTGAACAGG	0.510			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								117	62	---	---	---	---					
OCIAD1	54940	broad.mit.edu	37	4	48859263	48859264	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr4:48859263_48859264insA	uc003gyo.2	+	8	838_839	c.581_582insA	c.(580-582)AGAfs	p.R194fs	OCIAD1_uc003gyr.2_Frame_Shift_Ins_p.R194fs|OCIAD1_uc003gyp.2_Intron|OCIAD1_uc003gys.2_Intron|OCIAD1_uc003gyq.2_Intron|OCIAD1_uc010igk.2_Frame_Shift_Ins_p.R199fs	NM_017830	NP_060300	Q9NX40	OCAD1_HUMAN	OCIA domain containing 1 isoform 1	194						endosome	protein binding				0						AGTCCTAAAAGAAAAAATATTA	0.317													26	24	---	---	---	---					
TLX3	30012	broad.mit.edu	37	5	170736501	170736517	+	Frame_Shift_Del	DEL	GGGAGGGCCCCCCGGGG	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr5:170736501_170736517delGGGAGGGCCCCCCGGGG	uc003mbf.2	+	1	214_230	c.132_148delGGGAGGGCCCCCCGGGG	c.(130-150)CTGGGAGGGCCCCCCGGGGGCfs	p.L44fs	uc003mbe.1_5'Flank	NM_021025	NP_066305	O43711	TLX3_HUMAN	T-cell leukemia homeobox 3	44_50						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCAGCTACCTGGGAGGGCCCCCCGGGGGCCGTCCGGG	0.719			T	BCL11B	T-ALL								5	10	---	---	---	---					
KIAA1009	22832	broad.mit.edu	37	6	84871509	84871509	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr6:84871509delG	uc010kbp.2	-	20	2729	c.2632delC	c.(2632-2634)CGGfs	p.R878fs	KIAA1009_uc003pkj.3_Frame_Shift_Del_p.R802fs|KIAA1009_uc003pki.3_Frame_Shift_Del_p.R264fs	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	878	Potential.				cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		TCTCTAAGCCGAAGTGCATCT	0.333													4	6	---	---	---	---					
TBL2	26608	broad.mit.edu	37	7	72988772	72988772	+	Frame_Shift_Del	DEL	G	-	-	rs145718922		TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:72988772delG	uc003tyh.2	-	2	336	c.202delC	c.(202-204)CGGfs	p.R68fs	TBL2_uc011kex.1_Frame_Shift_Del_p.R32fs|TBL2_uc010lbg.2_5'UTR|TBL2_uc003tyi.2_5'UTR|TBL2_uc011key.1_5'UTR|TBL2_uc010lbh.2_Intron	NM_012453	NP_036585	Q9Y4P3	TBL2_HUMAN	transducin (beta)-like 2	68											0		Lung NSC(55;0.0659)|all_lung(88;0.152)				TTCTCCTTCCGAATCCGCTGA	0.522													16	95	---	---	---	---					
WDR91	29062	broad.mit.edu	37	7	134894380	134894381	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr7:134894380_134894381insT	uc003vsp.2	-	2	312_313	c.250_251insA	c.(250-252)ATCfs	p.I84fs	WDR91_uc010lmq.2_5'Flank|WDR91_uc010lmr.2_5'Flank	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	84										breast(2)|ovary(1)|skin(1)	4						CAGCTTGTGGATTGTGGGTCTG	0.495													44	91	---	---	---	---					
LRRCC1	85444	broad.mit.edu	37	8	86048155	86048155	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29D-06A-11D-A197-08	TCGA-EE-A29D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	533216ac-a18c-480a-aa80-e5710b2b4864	cba74885-548e-447f-b1b3-424cb4040252	g.chr8:86048155delA	uc003ycw.2	+	14	2440	c.2286delA	c.(2284-2286)TTAfs	p.L762fs	LRRCC1_uc010maa.1_Frame_Shift_Del_p.L463fs|LRRCC1_uc003ycx.2_Frame_Shift_Del_p.L669fs|LRRCC1_uc003ycy.2_Frame_Shift_Del_p.L742fs	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	762					cell division|mitosis	centriole|nucleus					0						TATTTGGTTTAAGGACAGAAA	0.358													16	54	---	---	---	---					
