Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	14976	14976	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:14976G>A	uc009vis.2	-	3		c.369C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CTACCCTTGCGCCTCATGACC	0.582													4	15					0	0	0.001984	0	0
TTLL10	254173	broad.mit.edu	37	1	1115637	1115637	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:1115637C>T	uc001acy.2	+	6	574	c.423C>T	c.(421-423)CTC>CTT	p.L141L	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Silent_p.L141L|TTLL10_uc001acz.1_Silent_p.L68L	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	141					protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGGAGGGGCTCCTGCTGGGGG	0.697													4	20					0	0	0.009096	0	0
B3GALT6	126792	broad.mit.edu	37	1	1168182	1168182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:1168182C>T	uc001adk.2	+	1	554	c.524C>T	c.(523-525)CCC>CTC	p.P175L	SDF4_uc001adh.3_5'Flank|SDF4_uc001adi.3_5'Flank|SDF4_uc009vjv.2_5'Flank|SDF4_uc009vjw.2_5'Flank	NM_080605	NP_542172	Q96L58	B3GT6_HUMAN	beta-1,3-galactosyltransferase 6	175	Lumenal (Potential).				glycosaminoglycan biosynthetic process|protein glycosylation	Golgi cisterna membrane|Golgi medial cisterna|integral to membrane	galactosylxylosylprotein 3-beta-galactosyltransferase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.22e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		gcccgcgagcccgcgcgccgc	0.597													7	10					0	0	0.001984	0	0
MXRA8	54587	broad.mit.edu	37	1	1289773	1289773	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:1289773G>A	uc001aew.2	-	6	1097	c.1066C>T	c.(1066-1068)CTG>TTG	p.L356L	MXRA8_uc001aex.3_Silent_p.L356L|MXRA8_uc001aey.3_Silent_p.L356L|MXRA8_uc010nyl.1_Silent_p.L356L|MXRA8_uc001aez.2_Silent_p.L255L|MXRA8_uc001afa.2_Silent_p.L347L	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	356	Helical; (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		ACAGTGACCAGTAGCAGGATG	0.682													17	41					0	0	0.004990	0	0
ATAD3B	83858	broad.mit.edu	37	1	1416287	1416287	+	Missense_Mutation	SNP	C	T	T	rs145500839		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:1416287C>T	uc001afv.2	+	5	586	c.485C>T	c.(484-486)TCC>TTC	p.S162F	ATAD3B_uc001afw.2_Missense_Mutation_p.S116F|ATAD3B_uc001afx.2_Missense_Mutation_p.S116F	NM_031921	NP_114127	Q5T9A4	ATD3B_HUMAN	AAA-ATPase  TOB3	162	Potential.						ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CAGGAGGAGTCCGTGCAGAAG	0.552													36	139					0	0	0.014410	0	0
ATAD3B	83858	broad.mit.edu	37	1	1417665	1417665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:1417665C>T	uc001afv.2	+	6	763	c.662C>T	c.(661-663)ACC>ATC	p.T221I	ATAD3B_uc001afw.2_Missense_Mutation_p.T175I|ATAD3B_uc001afx.2_Missense_Mutation_p.T175I	NM_031921	NP_114127	Q5T9A4	ATD3B_HUMAN	AAA-ATPase  TOB3	221							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CACCGTCAGACCGTCTTGGAG	0.692													18	56					0	0	0.021523	0	0
SKI	6497	broad.mit.edu	37	1	2237546	2237546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:2237546C>T	uc001aja.3	+	6	1927	c.1855C>T	c.(1855-1857)CTC>TTC	p.L619F		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	619	Potential.				anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		GATCGAGCGTCTCCGCGCCGA	0.662													5	11					0	0	0.001984	0	0
PLCH2	9651	broad.mit.edu	37	1	2415968	2415968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:2415968G>A	uc001aji.1	+	5	1001	c.727G>A	c.(727-729)GAC>AAC	p.D243N	PLCH2_uc010nyz.1_Missense_Mutation_p.D31N|PLCH2_uc009vle.1_Missense_Mutation_p.D31N|PLCH2_uc001ajj.1_Missense_Mutation_p.D31N|PLCH2_uc001ajk.1_Missense_Mutation_p.D31N	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	243					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CACCCGCCGGGACCTCTACCT	0.597													21	50					0	0	0.014323	0	0
PLCH2	9651	broad.mit.edu	37	1	2419097	2419097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:2419097C>T	uc001aji.1	+	8	1449	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F	PLCH2_uc010nyz.1_Missense_Mutation_p.S180F|PLCH2_uc009vle.1_Missense_Mutation_p.S180F|PLCH2_uc001ajj.1_Missense_Mutation_p.S180F|PLCH2_uc001ajk.1_Missense_Mutation_p.S180F	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	392	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACTCTGACTTCCAAGATCCTC	0.597													22	60					0	0	0.014323	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939071	2939071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:2939071C>T	uc001ajz.2	+	1	1026	c.821C>T	c.(820-822)CCC>CTC	p.P274L		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	274						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		AGCCAGAGCCCCGGGCTCTCG	0.632													50	168					0	0	0.014410	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939174	2939174	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:2939174C>T	uc001ajz.2	+	1	1129	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	308						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CTACCCTGTTCCACGGGCTGG	0.597													55	142					0	0	0.014410	0	0
KIAA0562	9731	broad.mit.edu	37	1	3753955	3753955	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:3753955G>A	uc001aky.2	-	9	1379	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Silent_p.F340F	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	340						centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		TTTCCTGAAGGAAAGGTTCTG	0.478													24	70					0	0	0.018920	0	0
AJAP1	55966	broad.mit.edu	37	1	4832398	4832398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:4832398G>A	uc001alm.1	+	4	1357	c.976G>A	c.(976-978)GAG>AAG	p.E326K	AJAP1_uc001aln.2_Missense_Mutation_p.E326K	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	326	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CAACCAGCAGGAGGAGAGCTG	0.617													34	62					0	0	0.013726	0	0
CHD5	26038	broad.mit.edu	37	1	6172243	6172243	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:6172243C>T	uc001amb.1	-	35	5197	c.5097G>A	c.(5095-5097)GGG>GGA	p.G1699G	CHD5_uc001alz.1_Silent_p.G556G|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1699					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTTGAATTTCCCCTTCTTGT	0.547													48	149					0	0	0.014410	0	0
CHD5	26038	broad.mit.edu	37	1	6185624	6185624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:6185624G>A	uc001amb.1	-	28	4320	c.4220C>T	c.(4219-4221)CCC>CTC	p.P1407L	CHD5_uc001alz.1_Missense_Mutation_p.P264L|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1407					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CGGGGGCAGGGGCTTGTCCCT	0.637													11	10					0	0	0.010729	0	0
PER3	8863	broad.mit.edu	37	1	7890145	7890145	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:7890145C>T	uc001aoo.2	+	18	3286	c.3111C>T	c.(3109-3111)TCC>TCT	p.S1037S	PER3_uc009vmg.1_Silent_p.S1045S|PER3_uc009vmh.1_Silent_p.S1038S|PER3_uc001aop.2_Silent_p.S1046S|PER3_uc010nzw.1_Silent_p.S726S	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	1037	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GGACTCCATCCCATCCTACTG	0.567													40	102					0	0	0.027894	0	0
CASZ1	54897	broad.mit.edu	37	1	10725204	10725204	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:10725204C>T	uc001aro.2	-	5	761	c.441G>A	c.(439-441)GAG>GAA	p.E147E	CASZ1_uc001arp.1_Silent_p.E147E|CASZ1_uc009vmx.2_Silent_p.E171E	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		AATCCTTCTCCTCCAGGGCAC	0.677													23	63					0	0	0.018920	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561170	11561170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:11561170G>A	uc001ash.3	+	2	259	c.121G>A	c.(121-123)GGG>AGG	p.G41R	PTCHD2_uc001asi.1_Missense_Mutation_p.G41R	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	41	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		ACCTGGGGCAGGGGGACAGTG	0.642													34	113					0	0	0.015359	0	0
PLOD1	5351	broad.mit.edu	37	1	12027068	12027068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12027068C>T	uc001atm.2	+	16	1766	c.1675C>T	c.(1675-1677)CCC>TCC	p.P559S	PLOD1_uc010obb.1_Missense_Mutation_p.P606S	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	559					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTATTGGTTCCCCATCTTCAC	0.607													40	166					0	0	0.014410	0	0
TNFRSF8	943	broad.mit.edu	37	1	12144532	12144532	+	Silent	SNP	C	T	T	rs146787215		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12144532C>T	uc001atq.2	+	2	297	c.75C>T	c.(73-75)TTC>TTT	p.F25F	TNFRSF8_uc010obc.1_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	25	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		ATCGACCCTTCGAGGACACCT	0.612													54	116					0	0	0.014410	0	0
VPS13D	55187	broad.mit.edu	37	1	12333117	12333117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12333117C>T	uc001atv.2	+	18	2302	c.2161C>T	c.(2161-2163)CCT>TCT	p.P721S	VPS13D_uc001atw.2_Missense_Mutation_p.P721S|VPS13D_uc001atx.2_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	721					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GGTGATATTTCCTGATGATTT	0.423													29	93					0	0	0.009535	0	0
VPS13D	55187	broad.mit.edu	37	1	12364674	12364674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12364674C>T	uc001atv.2	+	26	6469	c.6328C>T	c.(6328-6330)CTT>TTT	p.L2110F	VPS13D_uc001atw.2_Missense_Mutation_p.L2110F|VPS13D_uc001atx.2_Missense_Mutation_p.L1298F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2110					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CACGATGCCTCTTGCTGGAAT	0.567													30	82					0	0	0.010818	0	0
VPS13D	55187	broad.mit.edu	37	1	12416001	12416001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12416001C>T	uc001atv.2	+	48	9866	c.9725C>T	c.(9724-9726)CCA>CTA	p.P3242L	VPS13D_uc001atw.2_Missense_Mutation_p.P3217L|VPS13D_uc001atx.2_Missense_Mutation_p.P2429L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3241					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTGCTCATTCCACCTGGAACC	0.443													28	86					0	0	0.006320	0	0
VPS13D	55187	broad.mit.edu	37	1	12461714	12461714	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12461714C>T	uc001atv.2	+	62	11979	c.11838C>T	c.(11836-11838)CTC>CTT	p.L3946L	VPS13D_uc001atw.2_Silent_p.L3921L|VPS13D_uc001atx.2_Silent_p.L3133L|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3945					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGAAACTGCTCCTCAAGCTGC	0.393													46	117					0	0	0.014410	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853514	12853514	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12853514G>A	uc001auj.1	+	2	241	c.138G>A	c.(136-138)AGG>AGA	p.R46R		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	46											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTCAGCAGGAGACACTTCC	0.572													82	49					0	0	0.014410	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854280	12854280	+	Missense_Mutation	SNP	C	A	A	rs2790782	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12854280C>A	uc001auj.1	+	3	607	c.504C>A	c.(502-504)TTC>TTA	p.F168L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	168											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GATACCTCTTCCAGTGGGTTT	0.443													33	427					5.00936e-31	5.11538e-31	0.014410	1	0
PRAMEF4	400735	broad.mit.edu	37	1	12942930	12942930	+	Missense_Mutation	SNP	G	A	A	rs76269416		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:12942930G>A	uc001aun.2	-	2	357	c.286C>T	c.(286-288)CGT>TGT	p.R96C		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	96										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTGGGACGAACCCCTAGG	0.622													19	18					0	0	0.012319	0	0
LOC440563	440563	broad.mit.edu	37	1	13183577	13183577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:13183577C>T	uc010obg.1	-	1	391	c.296G>A	c.(295-297)CGA>CAA	p.R99Q		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	99						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CGCTGCGGATCGTTTCACACC	0.502													18	69					0	0	0.004990	0	0
CTRC	11330	broad.mit.edu	37	1	15771198	15771198	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:15771198G>A	uc001awi.1	+	6	614	c.591G>A	c.(589-591)AAG>AAA	p.K197K	CTRC_uc001awj.1_Intron	NM_007272	NP_009203	Q99895	CTRC_HUMAN	chymotrypsin C preproprotein	197	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0		Breast(348;0.000207)|all_lung(284;0.00021)|Colorectal(325;0.000257)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)|Hepatocellular(190;0.0634)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAGGGTGAAGAAAACCATGG	0.602													32	82					0	0	0.013726	0	0
PLEKHM2	23207	broad.mit.edu	37	1	16054325	16054325	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:16054325C>T	uc010obo.1	+	9	1985	c.1758C>T	c.(1756-1758)TTC>TTT	p.F586F		NM_015164	NP_055979	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M	586					Golgi organization	cytoplasm	kinesin binding			ovary(1)	1		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		CCTCGGAGTTCAGGTAACAAG	0.572													6	11					0	0	0.001984	0	0
FBLIM1	54751	broad.mit.edu	37	1	16101188	16101188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:16101188C>T	uc001axd.1	+	8	1230	c.787C>T	c.(787-789)CAC>TAC	p.H263Y	FBLIM1_uc001axe.1_Missense_Mutation_p.H263Y|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.H263Y|FBLIM1_uc001axh.1_Missense_Mutation_p.H166Y|FBLIM1_uc001axi.1_Missense_Mutation_p.H166Y	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	263	LIM zinc-binding 2.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CCAGGCCTTCCACCCCTCCTG	0.632													78	169					0	0	0.014410	0	0
PADI3	51702	broad.mit.edu	37	1	17601173	17601173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:17601173C>T	uc001bai.2	+	11	1239	c.1199C>T	c.(1198-1200)TCT>TTT	p.S400F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	400					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CGCGACAGGTCTGTGAGTGGC	0.607											OREG0013148	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	72					0	0	0.012213	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	18023706	18023706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:18023706G>A	uc001ban.2	+	29	3830	c.3671G>A	c.(3670-3672)CGG>CAG	p.R1224Q	ARHGEF10L_uc001bao.2_Missense_Mutation_p.R1185Q|ARHGEF10L_uc001bap.2_Missense_Mutation_p.R1180Q|ARHGEF10L_uc001baq.2_Missense_Mutation_p.R985Q|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.R997Q|ARHGEF10L_uc001bar.2_Missense_Mutation_p.R927Q|ARHGEF10L_uc009vpf.2_RNA|ARHGEF10L_uc001bas.2_Missense_Mutation_p.R248Q	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	1224					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		GTGCGCAGCCGGCCCTGCGCC	0.682													25	57					0	0	0.021523	0	0
ACTL8	81569	broad.mit.edu	37	1	18152389	18152389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:18152389C>T	uc001bat.2	+	3	692	c.476C>T	c.(475-477)CCT>CTT	p.P159L		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	159						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CGCGTGCAGCCTTTCCACCAG	0.627											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	48					0	0	0.016522	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18807986	18807986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:18807986G>A	uc001bax.2	+	1	563	c.511G>A	c.(511-513)GGA>AGA	p.G171R	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	171						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCCCAGCTGGACTCATTGC	0.617													25	82					0	0	0.006320	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808729	18808729	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:18808729C>T	uc001bax.2	+	1	1306	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I	KLHDC7A_uc009vpg.2_Silent_p.I200I	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	418						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTCCATATCCCGCTCACCC	0.652													51	83					0	0	0.014410	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809344	18809344	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:18809344C>T	uc001bax.2	+	1	1921	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	KLHDC7A_uc009vpg.2_Silent_p.F405F	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	623	Kelch 4.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GTGACACGTTCGCCCTGGCGC	0.667													13	38					0	0	0.020292	0	0
PLA2G2E	30814	broad.mit.edu	37	1	20248809	20248809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:20248809C>T	uc001bct.1	-	3	326	c.268G>A	c.(268-270)GAA>AAA	p.E90K		NM_014589	NP_055404	Q9NZK7	PA2GE_HUMAN	phospholipase A2, group IIE precursor	90					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|GBM - Glioblastoma multiforme(114;0.000146)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		ATGCCACGTTCGCTGACAGAG	0.577													30	65					0	0	0.013726	0	0
EIF4G3	8672	broad.mit.edu	37	1	21295998	21295998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:21295998C>T	uc001bec.2	-	7	771	c.515G>A	c.(514-516)GGA>GAA	p.G172E	EIF4G3_uc010odi.1_5'UTR|EIF4G3_uc010odj.1_Missense_Mutation_p.G172E|EIF4G3_uc009vpz.2_Missense_Mutation_p.G172E|EIF4G3_uc001bed.2_Missense_Mutation_p.G172E|EIF4G3_uc001bef.2_Missense_Mutation_p.G172E|EIF4G3_uc001bee.2_Missense_Mutation_p.G179E|EIF4G3_uc001beg.2_Missense_Mutation_p.G172E|EIF4G3_uc010odk.1_Missense_Mutation_p.G172E|EIF4G3_uc001beh.2_Missense_Mutation_p.G183E	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	172					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CGTGGGTCTTCCTATGGGTGG	0.458													29	75					0	0	0.006320	0	0
ZBTB40	9923	broad.mit.edu	37	1	22817085	22817086	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:22817085_22817086CC>TT	uc001bft.2	+	3	1155_1156	c.644_645CC>TT	c.(643-645)CCC>CTT	p.P215L	ZBTB40_uc001bfu.2_Missense_Mutation_p.P215L|ZBTB40_uc009vqi.1_Missense_Mutation_p.P215L	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	215					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		GCTTGTTCCCCCTCCCCTGCTG	0.47													23	79					0	0	0.004672	0	0
ZBTB40	9923	broad.mit.edu	37	1	22838356	22838356	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:22838356C>T	uc001bft.2	+	12	2701	c.2190C>T	c.(2188-2190)GAC>GAT	p.D730D	ZBTB40_uc001bfu.2_Silent_p.D730D|ZBTB40_uc009vqi.1_Silent_p.D618D|ZBTB40_uc001bfv.1_Silent_p.D359D	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	730					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CCTCCCCAGACCCTGCCAAGA	0.547													12	47					0	0	0.010729	0	0
EPHA8	2046	broad.mit.edu	37	1	22903352	22903352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:22903352G>A	uc001bfx.1	+	3	927	c.802G>A	c.(802-804)GAG>AAG	p.E268K	EPHA8_uc001bfw.2_Missense_Mutation_p.E268K	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	268	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CGGCTACGAGGAGCGGCGGGA	0.687													13	45					0	0	0.013537	0	0
EPHB2	2048	broad.mit.edu	37	1	23110979	23110979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:23110979G>A	uc009vqj.1	+	3	366	c.221G>A	c.(220-222)CGG>CAG	p.R74Q	EPHB2_uc001bge.2_Missense_Mutation_p.R74Q|EPHB2_uc001bgf.2_Missense_Mutation_p.R74Q|EPHB2_uc010odu.1_Missense_Mutation_p.R74Q	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	74	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AACTGGCTACGGACCAAGTTT	0.587									Hereditary_Prostate_Cancer				25	58					0	0	0.021523	0	0
KDM1A	23028	broad.mit.edu	37	1	23356988	23356988	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:23356988C>T	uc001bgi.2	+	2	527	c.378C>T	c.(376-378)AGC>AGT	p.S126S	KDM1A_uc001bgj.2_Silent_p.S126S	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	126	Potential.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						TGGATGAAAGCTTGGCCAACC	0.438													21	52					0	0	0.016522	0	0
CNR2	1269	broad.mit.edu	37	1	24201076	24201076	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:24201076C>T	uc001bif.2	-	2	1159	c.1032G>A	c.(1030-1032)GGG>GGA	p.G344G		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	344	Cytoplasmic (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	GAGTGATTTTCCCATCAGCCT	0.507													42	130					0	0	0.011902	0	0
MYOM3	127294	broad.mit.edu	37	1	24400740	24400740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:24400740C>T	uc001bin.3	-	23	3041	c.2878G>A	c.(2878-2880)GAA>AAA	p.E960K	MYOM3_uc001bim.3_Missense_Mutation_p.E617K|MYOM3_uc001bio.2_Missense_Mutation_p.E960K	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	960										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		AGGCCGGGTTCTTTCAGGATG	0.582													47	124					0	0	0.014410	0	0
MYOM3	127294	broad.mit.edu	37	1	24413234	24413234	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:24413234C>T	uc001bin.3	-	15	1861	c.1698G>A	c.(1696-1698)GAG>GAA	p.E566E	MYOM3_uc001bim.3_Silent_p.E223E|MYOM3_uc001bio.2_Silent_p.E566E|MYOM3_uc001bip.1_Silent_p.E223E	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	566	Fibronectin type-III 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		ACTTCTTTTTCTCCAGGTCCA	0.582													55	108					0	0	0.014410	0	0
MYOM3	127294	broad.mit.edu	37	1	24433675	24433675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:24433675C>T	uc001bin.3	-	4	453	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	MYOM3_uc001bio.2_Missense_Mutation_p.R97Q|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	97								p.R97*(1)		skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CTTCTGCCCTCGCTCCTCCAG	0.682													5	24					0	0	0.014758	0	0
RHCE	6006	broad.mit.edu	37	1	25715541	25715541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:25715541G>A	uc001bkf.2	-	6	951	c.865C>T	c.(865-867)CCT>TCT	p.P289S	RHCE_uc001bkg.2_Missense_Mutation_p.P289S|RHCE_uc001bkh.2_Missense_Mutation_p.P184S|RHCE_uc001bki.2_Intron|RHCE_uc001bkj.2_Missense_Mutation_p.P273S	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	289	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		CACGGAGAAGGGATCAGGTGA	0.557													25	74					0	0	0.009535	0	0
SYTL1	84958	broad.mit.edu	37	1	27679920	27679920	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:27679920G>A	uc001bnw.1	+	14	1657	c.1490G>A	c.(1489-1491)TGG>TAG	p.W497*	SYTL1_uc001bnv.1_Nonsense_Mutation_p.W485*|SYTL1_uc009vsu.1_Nonsense_Mutation_p.W432*|SYTL1_uc009vsv.1_Nonsense_Mutation_p.W497*	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	497	C2 2.				exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CTCTCCCTCTGGGACCATGGG	0.542													11	33					0	0	0.016723	0	0
AHDC1	27245	broad.mit.edu	37	1	27875278	27875279	+	Silent	DNP	GG	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:27875278_27875279GG>AT	uc009vsy.2	-	6	4317_4318	c.3348_3349CC>AT	c.(3346-3351)GGCCTG>GGATTG	p.1116_1117GL>GL	AHDC1_uc009vsz.1_Silent_p.1116_1117GL>GL	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1116_1117							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GCCCAGTCCAGGCCTCCATAGC	0.545													37	130					0	0	0.004672	0	0
EPB41	2035	broad.mit.edu	37	1	29379626	29379626	+	Silent	SNP	C	T	T	rs145888614	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:29379626C>T	uc001brm.1	+	11	1654	c.1647C>T	c.(1645-1647)GTC>GTT	p.V549V	EPB41_uc001brg.1_Silent_p.V340V|EPB41_uc001brh.1_Silent_p.V340V|EPB41_uc001bri.1_Silent_p.V514V|EPB41_uc001brj.1_Silent_p.V340V|EPB41_uc009vtk.1_Silent_p.V513V|EPB41_uc001brk.2_Silent_p.V549V|EPB41_uc001brl.1_Silent_p.V549V|EPB41_uc009vtl.1_Silent_p.V340V|EPB41_uc009vtm.1_Silent_p.V182V	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	549	Hydrophilic.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		CAGCAGCTGTCGATTCGGCAG	0.483													17	50					0	0	0.004990	0	0
PTPRU	10076	broad.mit.edu	37	1	29647278	29647278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:29647278G>A	uc001bru.2	+	27	3909	c.3799G>A	c.(3799-3801)GAT>AAT	p.D1267N	PTPRU_uc001brv.2_Missense_Mutation_p.D1263N|PTPRU_uc001brw.2_Missense_Mutation_p.D1257N|PTPRU_uc009vtq.2_Missense_Mutation_p.D1263N|PTPRU_uc009vtr.2_Missense_Mutation_p.D1254N|PTPRU_uc001brx.2_5'UTR	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1267	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GCTGGTCTACGATTACGGGTG	0.642													40	88					0	0	0.007835	0	0
KPNA6	23633	broad.mit.edu	37	1	32628862	32628862	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:32628862C>A	uc001bug.2	+	10	1026	c.938C>A	c.(937-939)CCT>CAT	p.P313H	KPNA6_uc001buh.2_Missense_Mutation_p.P88H|KPNA6_uc010ogx.1_Missense_Mutation_p.P310H|KPNA6_uc010ogy.1_Missense_Mutation_p.P318H|KPNA6_uc009vtz.2_Missense_Mutation_p.P208H	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	313	ARM 6.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GTGGCTTCTCCTGCCCTGAGA	0.517													8	38					0.00829132	0.00837942	0.008291	1	0
EIF3I	8668	broad.mit.edu	37	1	32691786	32691786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:32691786C>T	uc001bur.3	+	6	798	c.265C>T	c.(265-267)CTT>TTT	p.L89F	EIF3I_uc009vuc.2_Missense_Mutation_p.L89F|EIF3I_uc001bus.2_Missense_Mutation_p.L41F	NM_003757	NP_003748	Q13347	EIF3I_HUMAN	eukaryotic translation initiation factor 3,	89	WD 2.					cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)				GCAGCTGGCCCTTCTCAAGAC	0.517													32	121					0	0	0.021022	0	0
MARCKSL1	65108	broad.mit.edu	37	1	32800251	32800251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:32800251G>A	uc001bvd.2	-	2	735	c.535C>T	c.(535-537)CCC>TCC	p.P179S		NM_023009	NP_075385	P49006	MRP_HUMAN	MARCKS-like 1	179						plasma membrane	calmodulin binding			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GGCCCCGAGGGAGTGGATGGC	0.632													30	144					0	0	0.008361	0	0
S100PBP	64766	broad.mit.edu	37	1	33291810	33291810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:33291810C>T	uc001bvz.2	+	3	387	c.110C>T	c.(109-111)TCC>TTC	p.S37F	S100PBP_uc001bwa.1_Missense_Mutation_p.S37F|S100PBP_uc001bwb.1_Missense_Mutation_p.S37F|S100PBP_uc001bwc.2_Missense_Mutation_p.S37F|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	37						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TTGGATGACTCCTTGCTGGAG	0.478													72	158					0	0	0.014410	0	0
S100PBP	64766	broad.mit.edu	37	1	33292157	33292157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:33292157C>T	uc001bvz.2	+	3	734	c.457C>T	c.(457-459)CCA>TCA	p.P153S	S100PBP_uc001bwa.1_Missense_Mutation_p.P153S|S100PBP_uc001bwb.1_Missense_Mutation_p.P153S|S100PBP_uc001bwc.2_Missense_Mutation_p.P153S|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	153						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				ACCATTTAATCCAACAGTTTG	0.393													28	93					0	0	0.027356	0	0
ZNF362	149076	broad.mit.edu	37	1	33736189	33736189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:33736189C>T	uc001bxc.1	+	2	184	c.14C>T	c.(13-15)TCA>TTA	p.S5L		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				agtagaagttcaccaagtggg	0.154													55	160					0	0	0.014410	0	0
CSMD2	114784	broad.mit.edu	37	1	34066481	34066481	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:34066481G>A	uc001bxn.1	-	45	6875	c.6846C>T	c.(6844-6846)TTC>TTT	p.F2282F	CSMD2_uc001bxm.1_Silent_p.F2280F|CSMD2_uc001bxo.1_Silent_p.F1153F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2282	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGCTATGGCGAAGATCCCCC	0.348													34	88					0	0	0.015359	0	0
CSMD2	114784	broad.mit.edu	37	1	34076727	34076727	+	Missense_Mutation	SNP	G	A	A	rs140911773		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:34076727G>A	uc001bxn.1	-	41	6166	c.6137C>T	c.(6136-6138)TCC>TTC	p.S2046F	CSMD2_uc001bxm.1_Missense_Mutation_p.S2086F|CSMD2_uc001bxo.1_Missense_Mutation_p.S959F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2046	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAGAGGAGGGAGCTTGGAAG	0.557													21	54					0	0	0.012319	0	0
CSMD2	114784	broad.mit.edu	37	1	34090118	34090118	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:34090118C>T	uc001bxn.1	-	35	5534	c.5505_splice	c.e35+1	p.Q1835_splice	CSMD2_uc001bxm.1_Splice_Site_p.Q1875_splice|CSMD2_uc001bxo.1_Splice_Site_p.Q748_splice	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2							integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTTGCCCCTACCTGGATGCCA	0.657													57	135					0	0	0.014410	0	0
ZMYM6	9204	broad.mit.edu	37	1	35480350	35480350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:35480350G>A	uc001byh.2	-	6	971	c.743C>T	c.(742-744)CCT>CTT	p.P248L	ZMYM6_uc001byf.1_Missense_Mutation_p.P248L|ZMYM6_uc010oht.1_Missense_Mutation_p.P151L|ZMYM6_uc009vup.2_Missense_Mutation_p.P54L|ZMYM6_uc009vuq.1_Missense_Mutation_p.P248L|ZMYM6_uc009vur.1_Missense_Mutation_p.P54L	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	248	MYM-type 3.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GGATTGGCAAGGACCAGAGCT	0.413													26	86					0	0	0.010818	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579545	35579545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:35579545G>A	uc001bym.2	+	11	2262	c.2114G>A	c.(2113-2115)GGA>GAA	p.G705E	ZMYM1_uc001byn.2_Missense_Mutation_p.G705E|ZMYM1_uc010ohu.1_Missense_Mutation_p.G686E|ZMYM1_uc001byo.2_Missense_Mutation_p.G345E|ZMYM1_uc009vut.2_Missense_Mutation_p.G630E	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	705						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CAGCAAATTGGAGTTGATATG	0.353													49	107					0	0	0.014410	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579937	35579937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:35579937C>T	uc001bym.2	+	11	2654	c.2506C>T	c.(2506-2508)CAT>TAT	p.H836Y	ZMYM1_uc001byn.2_Missense_Mutation_p.H836Y|ZMYM1_uc010ohu.1_Missense_Mutation_p.H817Y|ZMYM1_uc001byo.2_Missense_Mutation_p.H476Y|ZMYM1_uc009vut.2_Missense_Mutation_p.H761Y	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	836						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TATAGCAAGCCATTCTTCAAA	0.353													21	91					0	0	0.008871	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35926016	35926016	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:35926016G>A	uc001byx.2	-	9	1575	c.1317C>T	c.(1315-1317)ATC>ATT	p.I439I	KIAA0319L_uc010ohv.1_Silent_p.I81I|KIAA0319L_uc010ohw.1_RNA	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	439	PKD 2.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGTACTGAACGATTTTATCAT	0.393													34	112					0	0	0.019004	0	0
COL8A2	1296	broad.mit.edu	37	1	36564614	36564614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:36564614C>T	uc001bzv.1	-	2	675	c.668G>A	c.(667-669)GGT>GAT	p.G223D	COL8A2_uc001bzw.1_Missense_Mutation_p.G158D	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	223	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GCCGGGGGCACCCCCCTGCCC	0.726													14	27					0	0	0.004990	0	0
C1orf113	79729	broad.mit.edu	37	1	36785831	36785831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:36785831G>A	uc010oia.1	+	14	1595	c.1567G>A	c.(1567-1569)GAT>AAT	p.D523N	C1orf113_uc010oib.1_Missense_Mutation_p.D412N|C1orf113_uc010oic.1_RNA|C1orf113_uc009vuz.1_Missense_Mutation_p.D169N	NM_001162530	NP_001156002	A4FU49	SH321_HUMAN	SH3 domain-containing protein C1orf113 isoform	407											0		Myeloproliferative disorder(586;0.0393)				AGCCAAAGAGGATCCATCATC	0.537													36	90					0	0	0.017118	0	0
MACF1	23499	broad.mit.edu	37	1	39750861	39750861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:39750861C>T	uc010ois.1	+	13	1458	c.1253C>T	c.(1252-1254)TCA>TTA	p.S418L	MACF1_uc001cda.1_Missense_Mutation_p.S326L	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	418					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGAGAGAAATCACTTCGGCCG	0.453													38	83					0	0	0.019004	0	0
MACF1	23499	broad.mit.edu	37	1	39753131	39753131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:39753131G>A	uc010ois.1	+	16	1902	c.1697G>A	c.(1696-1698)CGA>CAA	p.R566Q	MACF1_uc001cda.1_Missense_Mutation_p.R474Q	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	566					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TCCTGGTTCCGAAAGCCTATG	0.468													96	223					0	0	0.014410	0	0
MACF1	23499	broad.mit.edu	37	1	39818781	39818781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:39818781C>T	uc010oiu.1	+	8	6753	c.6622C>T	c.(6622-6624)CTT>TTT	p.L2208F	MACF1_uc010ois.1_Missense_Mutation_p.L1706F|MACF1_uc001cda.1_Missense_Mutation_p.L1614F|MACF1_uc001cdc.1_Missense_Mutation_p.L793F|MACF1_uc001cdb.1_Missense_Mutation_p.L793F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3773					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GCTGACCAACCTTCCAGGAAT	0.512													15	52					0	0	0.028581	0	0
BMP8A	353500	broad.mit.edu	37	1	39988140	39988140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:39988140G>A	uc001cdi.2	+	5	1280	c.934G>A	c.(934-936)GAC>AAC	p.D312N	PPIEL_uc001cdj.1_RNA|PPIEL_uc001cdk.2_RNA	NM_181809	NP_861525	Q7Z5Y6	BMP8A_HUMAN	bone morphogenetic protein 8A precursor	312					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(20;2.08e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;9.69e-19)|Epithelial(16;9.34e-17)|all cancers(16;1.73e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAGCTTCCAGGACCTTGGCTG	0.562													45	147					0	0	0.014410	0	0
BMP8B	656	broad.mit.edu	37	1	40229398	40229398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:40229398C>T	uc001cdz.1	-	5	1310	c.934G>A	c.(934-936)GAC>AAC	p.D312N	BMP8B_uc001cea.1_Missense_Mutation_p.D337N|PPIE_uc001cdv.2_Missense_Mutation_p.S292F|PPIE_uc001cdw.2_3'UTR	NM_001720	NP_001711	P34820	BMP8B_HUMAN	bone morphogenetic protein 8B preproprotein	312					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CAGCCGAGGTCCTGGAAGCTG	0.557													9	183					0	0	0.006122	0	0
SCMH1	22955	broad.mit.edu	37	1	41579192	41579192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:41579192G>A	uc001cgo.2	-	8	789	c.478C>T	c.(478-480)CCA>TCA	p.P160S	SCMH1_uc010ojr.1_Intron|SCMH1_uc001cgp.2_Missense_Mutation_p.P99S|SCMH1_uc001cgr.2_Missense_Mutation_p.P99S|SCMH1_uc001cgs.2_Missense_Mutation_p.P170S|SCMH1_uc001cgt.2_Missense_Mutation_p.P99S|SCMH1_uc001cgq.2_Missense_Mutation_p.P113S|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	160	MBT 2.				anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				GAAGGCGATGGTGGCTCCTAG	0.438													15	49					0	0	0.028581	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046371	42046371	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:42046371C>T	uc001cgz.3	-	4	5311	c.4098G>A	c.(4096-4098)ACG>ACA	p.T1366T	HIVEP3_uc001cha.3_Silent_p.T1366T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1366					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CACATACAGTCGTCCCCTTTG	0.547													47	148					0	0	0.011902	0	0
SLC2A1	6513	broad.mit.edu	37	1	43396351	43396351	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:43396351C>T	uc001cik.2	-	4	987	c.462G>A	c.(460-462)GGG>GGA	p.G154G		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	154	Cytoplasmic (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TGCCCAGGGCCCCACGAAGGG	0.647													11	31					0	0	0.010729	0	0
WDR65	149465	broad.mit.edu	37	1	43675583	43675583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:43675583C>T	uc001cip.1	+	11	2046	c.1925C>T	c.(1924-1926)ACC>ATC	p.T642I	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.T631I|WDR65_uc001ciq.1_Missense_Mutation_p.T642I	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	642	WD 10.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGTCCTATCACCAAGGTGAGC	0.557													27	81					0	0	0.021523	0	0
C1orf210	149466	broad.mit.edu	37	1	43748497	43748497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:43748497C>T	uc001cit.3	-	3	535	c.301G>A	c.(301-303)GAG>AAG	p.E101K		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	101	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GTCCCCAGCTCGCCAGTCCCA	0.582													47	133					0	0	0.014410	0	0
TIE1	7075	broad.mit.edu	37	1	43778085	43778085	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:43778085C>T	uc001ciu.2	+	12	1819	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	TIE1_uc010okd.1_Silent_p.F580F|TIE1_uc010oke.1_Silent_p.F535F|TIE1_uc009vwq.2_Silent_p.F536F|TIE1_uc010okf.1_Silent_p.F225F|TIE1_uc010okg.1_Silent_p.F225F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	580	Fibronectin type-III 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCGACGGTTTCCTGCTGCGCC	0.701													34	79					0	0	0.019004	0	0
PTPRF	5792	broad.mit.edu	37	1	44084328	44084328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:44084328C>T	uc001cjr.2	+	26	4739	c.4399C>T	c.(4399-4401)CGT>TGT	p.R1467C	PTPRF_uc001cjs.2_Missense_Mutation_p.R1458C|PTPRF_uc001cju.2_Missense_Mutation_p.R856C|PTPRF_uc009vwt.2_Missense_Mutation_p.R1027C|PTPRF_uc001cjv.2_Missense_Mutation_p.R938C|PTPRF_uc001cjw.2_Missense_Mutation_p.R693C	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1467	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CTGGCCAGCCCGTGGCACCGA	0.597													65	155					0	0	0.014410	0	0
DMBX1	127343	broad.mit.edu	37	1	46976664	46976664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:46976664G>A	uc001cpx.2	+	3	421	c.406G>A	c.(406-408)GAA>AAA	p.E136K	DMBX1_uc001cpw.2_Missense_Mutation_p.E131K	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	136	Interacts with OXT2 and is required for repressor activity (By similarity).				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CCTGCAGAAGGAACAGCTCCA	0.627													35	78					0	0	0.013726	0	0
CYP4X1	260293	broad.mit.edu	37	1	47514238	47514238	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:47514238G>A	uc001cqt.2	+	10	1459	c.1209G>A	c.(1207-1209)GGG>GGA	p.G403G	CYP4X1_uc001cqr.2_Silent_p.G402G|CYP4X1_uc001cqs.2_Silent_p.G338G	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	403						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTTTCTTAGGGATCACCGTGG	0.428													81	196					0	0	0.014410	0	0
STIL	6491	broad.mit.edu	37	1	47716976	47716976	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:47716976G>A	uc001crc.1	-	17	3851	c.3696C>T	c.(3694-3696)ACC>ACT	p.T1232T	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.T1186T|STIL_uc010omo.1_Silent_p.T1215T|STIL_uc001crd.1_Silent_p.T1233T|STIL_uc001cre.1_Silent_p.T1232T	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	1232					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				CTGCTTTCCCGGTTCGAAGGT	0.403													52	152					0	0	0.014410	0	0
ELAVL4	1996	broad.mit.edu	37	1	50666695	50666695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:50666695C>T	uc001csb.2	+	7	1256	c.988C>T	c.(988-990)CGT>TGT	p.R330C	ELAVL4_uc001cry.3_Missense_Mutation_p.R319C|ELAVL4_uc001crz.3_Missense_Mutation_p.R316C|ELAVL4_uc001csa.3_Missense_Mutation_p.R333C|ELAVL4_uc001csc.3_Missense_Mutation_p.R316C|ELAVL4_uc010omz.1_Missense_Mutation_p.R321C	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	330	RRM 3.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						AAAGGTGATTCGTGACTTCAA	0.542													35	94					0	0	0.027894	0	0
NRD1	4898	broad.mit.edu	37	1	52293523	52293523	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:52293523G>A	uc001ctc.3	-	7	1411	c.1089C>T	c.(1087-1089)ATC>ATT	p.I363I	NRD1_uc009vzb.2_Silent_p.I58I|NRD1_uc001ctd.3_Silent_p.I295I|NRD1_uc001cte.2_Silent_p.I231I|NRD1_uc001ctf.2_Silent_p.I295I|NRD1_uc010ong.1_RNA|NRD1_uc009vzc.1_Silent_p.I163I	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	294					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TTAGTGGGTGGATGAAGAACT	0.353													22	45					0	0	0.024334	0	0
C1orf163	65260	broad.mit.edu	37	1	53153720	53153720	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:53153720A>C	uc001cui.1	-	3	408	c.368T>G	c.(367-369)GTT>GGT	p.V123G		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	123	Sel1-like 3.						binding				0						ATCCTCATTAACCTGTCCATC	0.527													44	107					0	0	0.008740	0	0
CYB5RL	606495	broad.mit.edu	37	1	54640376	54640376	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:54640376G>A	uc009vzo.2	-	8	1184	c.864C>T	c.(862-864)GTC>GTT	p.V288V	CYB5RL_uc001cww.2_Silent_p.V178V|CYB5RL_uc001cwx.3_RNA|CYB5RL_uc001cwy.3_Silent_p.V140V	NM_001031672	NP_001026842	Q6IPT4	NB5R5_HUMAN	cytochrome b5 reductase-like	288							cytochrome-b5 reductase activity				0						CCGAGCCACAGACCAGTGCGA	0.547													15	40					0	0	0.020292	0	0
C1orf175	374977	broad.mit.edu	37	1	55158216	55158216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:55158216G>A	uc010ooe.1	+	16	3155	c.2831G>A	c.(2830-2832)GGA>GAA	p.G944E	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.G512E|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G462E|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.G944E|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.G146E|C1orf175_uc001cxu.2_Missense_Mutation_p.G90E	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	944						integral to membrane	binding				0						CACCACCGCGGAGTGGCCTTG	0.612													32	63					0	0	0.017118	0	0
BSND	7809	broad.mit.edu	37	1	55474209	55474209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:55474209G>A	uc001cye.2	+	4	1114	c.871G>A	c.(871-873)GAA>AAA	p.E291K		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	291	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						ACCTGAGAAGGAAGAGGAAGA	0.587													31	88					0	0	0.012213	0	0
USP24	23358	broad.mit.edu	37	1	55598327	55598327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:55598327G>A	uc001cyg.3	-	28	2948	c.2948C>T	c.(2947-2949)TCC>TTC	p.S983F		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	1143	Ser-rich.				ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						TGATGACAGGGATGGAGATTT	0.393													23	25					0	0	0.012319	0	0
PRKAA2	5563	broad.mit.edu	37	1	57170073	57170074	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57170073_57170074CC>TT	uc001cyk.3	+	7	1289_1290	c.1218_1219CC>TT	c.(1216-1221)ATCCGA>ATTTGA	p.R407*		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	407			R -> Q (in a gastric adenocarcinoma sample; somatic mutation).		carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding	p.R407Q(1)		breast(4)|ovary(1)|stomach(1)	6						ATCTTGGAATCCGAAGTCAGAG	0.411													33	95					0	0	0.004672	0	0
C1orf168	199920	broad.mit.edu	37	1	57233561	57233561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57233561G>A	uc001cym.3	-	5	1410	c.1004C>T	c.(1003-1005)TCA>TTA	p.S335L	C1orf168_uc009vzu.1_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	335										ovary(3)|skin(2)	5						TCTCAGATATGAAATTGTTGC	0.353													27	86					0	0	0.008361	0	0
C1orf168	199920	broad.mit.edu	37	1	57257937	57257937	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57257937C>T	uc001cym.3	-	2	955	c.549G>A	c.(547-549)AGG>AGA	p.R183R	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.R183R	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	183										ovary(3)|skin(2)	5						CCAGCTTTTTCCTGGGTTCCT	0.478													28	85					0	0	0.007291	0	0
C8B	732	broad.mit.edu	37	1	57425832	57425832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57425832G>A	uc001cyp.2	-	2	177	c.110C>T	c.(109-111)TCC>TTC	p.S37F	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_5'UTR	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	37					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGACCCAAAGGAATGTGGCCT	0.418													22	89					0	0	0.018920	0	0
DAB1	1600	broad.mit.edu	37	1	57480957	57480957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57480957G>A	uc001cys.1	-	14	1717	c.1043C>T	c.(1042-1044)CCT>CTT	p.P348L	DAB1_uc001cyt.1_Missense_Mutation_p.P346L|DAB1_uc001cyq.1_Missense_Mutation_p.P346L|DAB1_uc001cyr.1_Missense_Mutation_p.P262L|DAB1_uc009vzw.1_Missense_Mutation_p.P330L|DAB1_uc009vzx.1_Missense_Mutation_p.P348L	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	381					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CTGAGTGGCAGGAAAGAGACC	0.637													42	136					0	0	0.007835	0	0
DAB1	1600	broad.mit.edu	37	1	57602291	57602291	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57602291G>A	uc001cys.1	-	6	905	c.231C>T	c.(229-231)TCC>TCT	p.S77S	DAB1_uc001cyt.1_Silent_p.S77S|DAB1_uc001cyq.1_Silent_p.S77S|DAB1_uc001cyr.1_Silent_p.S77S|DAB1_uc009vzw.1_Silent_p.S77S|DAB1_uc009vzx.1_Silent_p.S77S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	77	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						GTTCTCCTTTGGAACGAGCGC	0.398													7	25					0	0	0.001984	0	0
DAB1	1600	broad.mit.edu	37	1	57611094	57611094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:57611094G>A	uc001cys.1	-	5	750	c.76C>T	c.(76-78)CGC>TGC	p.R26C	DAB1_uc001cyt.1_Missense_Mutation_p.R26C|DAB1_uc001cyq.1_Missense_Mutation_p.R26C|DAB1_uc001cyr.1_Missense_Mutation_p.R26C|DAB1_uc009vzw.1_Missense_Mutation_p.R26C|DAB1_uc009vzx.1_Missense_Mutation_p.R26C	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	26					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTTCACTGCGATCCTGACCT	0.458													25	70					0	0	0.021523	0	0
HOOK1	51361	broad.mit.edu	37	1	60314051	60314051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:60314051G>A	uc009wad.2	+	12	1096	c.994G>A	c.(994-996)GAT>AAT	p.D332N	HOOK1_uc001czo.2_Missense_Mutation_p.D332N|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.D290N	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	332	Potential.|Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					GAAGCTACAAGATCTGAATGA	0.343													7	31					0	0	0.004482	0	0
INADL	10207	broad.mit.edu	37	1	62235066	62235066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:62235066G>A	uc001dab.2	+	5	610	c.496G>A	c.(496-498)GAT>AAT	p.D166N	INADL_uc009waf.1_Missense_Mutation_p.D166N|INADL_uc001daa.2_Missense_Mutation_p.D166N|INADL_uc001dad.3_5'Flank	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	166	PDZ 1.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CTTCGTGAAGGATGTCCAGCC	0.403													48	169					0	0	0.014410	0	0
INADL	10207	broad.mit.edu	37	1	62330129	62330129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:62330129G>A	uc001dab.2	+	20	2773	c.2659G>A	c.(2659-2661)GAG>AAG	p.E887K	INADL_uc009waf.1_Missense_Mutation_p.E887K|INADL_uc001daa.2_Missense_Mutation_p.E887K|INADL_uc001dad.3_Missense_Mutation_p.E584K|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	887					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ACCATCCATGGAGTTGTATCC	0.423													44	111					0	0	0.011902	0	0
L1TD1	54596	broad.mit.edu	37	1	62672511	62672511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:62672511G>A	uc001dae.3	+	3	513	c.211G>A	c.(211-213)GAA>AAA	p.E71K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	71										ovary(1)|skin(1)	2						ggagatgagggaaactcttaa	0.05													14	44					0	0	0.016723	0	0
L1TD1	54596	broad.mit.edu	37	1	62675887	62675887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:62675887G>A	uc001dae.3	+	4	1743	c.1441G>A	c.(1441-1443)GAA>AAA	p.E481K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	481	Glu-rich.									ovary(1)|skin(1)	2						ATCAGAGGAGGAAGAAGAAGG	0.403													24	61					0	0	0.018920	0	0
KANK4	163782	broad.mit.edu	37	1	62703961	62703962	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:62703961_62703962GG>AA	uc001dah.3	-	10	3352_3353	c.2975_2976CC>TT	c.(2974-2976)TCC>TTT	p.S992F	KANK4_uc001dai.3_Missense_Mutation_p.S364F|KANK4_uc001daf.3_Missense_Mutation_p.S130F|KANK4_uc001dag.3_Missense_Mutation_p.S348F	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	992	ANK 5.									ovary(3)|skin(2)|lung(1)	6						ACAGCCCCAGGGACCTGCCCTG	0.609													20	42					0	0	0.004672	0	0
DOCK7	85440	broad.mit.edu	37	1	63021546	63021546	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:63021546A>G	uc001daq.2	-	21	2580	c.2546T>C	c.(2545-2547)ATT>ACT	p.I849T	DOCK7_uc001dan.2_Missense_Mutation_p.I741T|DOCK7_uc001dao.2_Missense_Mutation_p.I741T|DOCK7_uc001dap.2_Missense_Mutation_p.I849T|DOCK7_uc001dam.2_Missense_Mutation_p.I29T	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	849					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						AACATAATGAATATATGATGC	0.343													41	87					0	0	0.007835	0	0
PGM1	5236	broad.mit.edu	37	1	64125271	64125272	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:64125271_64125272CC>TA	uc001dbh.2	+	11	1827_1828	c.1614_1615CC>TA	c.(1612-1617)CCCCTT>CCTATT	p.L539I	PGM1_uc010ooy.1_Missense_Mutation_p.L342I|PGM1_uc010ooz.1_Missense_Mutation_p.L557I	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	539					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						TGTTGGCCCCCCTTATTTCCAT	0.431													30	71					0	0	0.004672	0	0
IL23R	149233	broad.mit.edu	37	1	67666433	67666433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:67666433G>A	uc001ddo.2	+	5	590	c.505G>A	c.(505-507)GAA>AAA	p.E169K	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_Intron|IL23R_uc010opk.1_Missense_Mutation_p.E126K|IL23R_uc010opl.1_Intron|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_Intron|IL23R_uc010opn.1_Missense_Mutation_p.E14K|IL23R_uc001ddr.2_RNA|IL23R_uc010opo.1_Missense_Mutation_p.E28K|IL23R_uc010opp.1_RNA|IL23R_uc010opq.1_Missense_Mutation_p.E28K|IL23R_uc010opr.1_RNA|IL23R_uc010ops.1_Intron|IL23R_uc010opt.1_5'UTR|IL23R_uc010opu.1_5'UTR|IL23R_uc010opv.1_Missense_Mutation_p.E28K|IL23R_uc010opw.1_Intron|IL23R_uc010opx.1_Intron|IL23R_uc010opy.1_5'UTR|IL23R_uc010opz.1_Intron|IL23R_uc010oqa.1_5'UTR|IL23R_uc010oqb.1_Missense_Mutation_p.E28K|IL23R_uc010oqc.1_Intron|IL23R_uc010oqd.1_Intron|IL23R_uc010oqe.1_Intron|IL23R_uc010oqf.1_Intron|IL23R_uc010oqg.1_5'UTR|IL23R_uc010oqh.1_Intron	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	169	Extracellular (Potential).|Fibronectin type-III 1.				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						AGAGACAGAAGAAGAGCAACA	0.279													27	115					0	0	0.007291	0	0
RPE65	6121	broad.mit.edu	37	1	68910481	68910481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:68910481G>A	uc001dei.1	-	4	385	c.331C>T	c.(331-333)CCC>TCC	p.P111S		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	111					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TTCTTGCAGGGATCTGGGAAA	0.408													36	92					0	0	0.008740	0	0
LRRC7	57554	broad.mit.edu	37	1	70501887	70501887	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:70501887A>C	uc001dep.2	+	17	1995	c.1965A>C	c.(1963-1965)AAA>AAC	p.K655N	LRRC7_uc009wbg.2_Intron|LRRC7_uc001deq.2_5'Flank	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	655						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ACCCACCCAAACTTGTTCTGC	0.403													20	46					0	0	0.016522	0	0
NEGR1	257194	broad.mit.edu	37	1	72241978	72241978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:72241978G>A	uc001dfw.2	-	3	512	c.412C>T	c.(412-414)CCT>TCT	p.P138S	NEGR1_uc001dfv.2_Missense_Mutation_p.P10S|NEGR1_uc010oqs.1_Missense_Mutation_p.P138S	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	138					cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		ATCTTAGGAGGAACTGAAATG	0.353													5	17					0	0	0.021553	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74621525	74621525	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:74621525T>A	uc001dfy.3	-	4	791	c.599A>T	c.(598-600)AAT>ATT	p.N200I	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	200										ovary(2)	2						TTTAATATTATTAATTTCCTC	0.234													19	35					0	0	0.006122	0	0
TNNI3K	51086	broad.mit.edu	37	1	74834752	74834752	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:74834752C>T	uc001dgf.1	+	14	1419	c.1368C>T	c.(1366-1368)TTC>TTT	p.F456F	TNNI3K_uc001dgc.1_Silent_p.F557F|TNNI3K_uc001dgd.2_Silent_p.F557F|TNNI3K_uc001dge.1_Silent_p.F557F	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	456						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						CTTCACATTTCCATCTTCAGC	0.353													3	21					0	0	0.004672	0	0
TNNI3K	51086	broad.mit.edu	37	1	74905279	74905279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:74905279G>A	uc001dgf.1	+	20	2035	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	TNNI3K_uc001dgd.2_Missense_Mutation_p.E763K|TNNI3K_uc001dge.1_Missense_Mutation_p.E763K	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	662	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCACTGGCGAAATTCCATT	0.438													16	61					0	0	0.028581	0	0
SLC44A5	204962	broad.mit.edu	37	1	75672358	75672358	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:75672358G>A	uc001dgu.2	-	24	2238	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F	SLC44A5_uc001dgt.2_Intron|SLC44A5_uc001dgs.2_Intron|SLC44A5_uc001dgr.2_Intron|SLC44A5_uc010oqz.1_Intron|SLC44A5_uc010ora.1_Silent_p.F692F|SLC44A5_uc010orb.1_Silent_p.F568F	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	698	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TAGGGGTTACGAAGTAGGGTT	0.413													29	53					0	0	0.015359	0	0
MSH4	4438	broad.mit.edu	37	1	76355016	76355016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:76355016G>A	uc001dhd.1	+	16	2229	c.2188G>A	c.(2188-2190)GAA>AAA	p.E730K		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	730					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TGATGATATCGAAACAAATTC	0.289								MMR					35	103					0	0	0.019004	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77510144	77510144	+	Missense_Mutation	SNP	C	T	T	rs111715869		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:77510144C>T	uc001dhi.2	+	3	692	c.517C>T	c.(517-519)CCC>TCC	p.P173S	ST6GALNAC5_uc010ori.1_Intron|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	173	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						CTTCTGGGGCCCCAGCAGCTA	0.622													50	122					0	0	0.014410	0	0
ELTD1	64123	broad.mit.edu	37	1	79403621	79403621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:79403621C>T	uc001diq.3	-	6	787	c.631G>A	c.(631-633)GAC>AAC	p.D211N		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	211	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GATAACTTGTCCCAAACTACA	0.343													24	121					0	0	0.014323	0	0
COL24A1	255631	broad.mit.edu	37	1	86306910	86306910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:86306910C>T	uc001dlj.2	-	42	3664	c.3622G>A	c.(3622-3624)GAA>AAA	p.E1208K	COL24A1_uc001dli.2_Missense_Mutation_p.E344K|COL24A1_uc010osd.1_Missense_Mutation_p.E508K|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1208	Collagen-like 13.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CCTACTGGTTCACCTCGAGGC	0.328													20	23					0	0	0.014323	0	0
CLCA2	9635	broad.mit.edu	37	1	86898134	86898134	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:86898134A>T	uc001dlr.3	+	5	829	c.667A>T	c.(667-669)AAA>TAA	p.K223*		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	223	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		TAAGCTTTTTAAAGAAGGATG	0.363													99	105					0	0	0.014410	0	0
PKN2	5586	broad.mit.edu	37	1	89237436	89237436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:89237436C>T	uc001dmn.2	+	6	1201	c.859C>T	c.(859-861)CCC>TCC	p.P287S	PKN2_uc001dmm.1_Missense_Mutation_p.P287S|PKN2_uc010osp.1_Missense_Mutation_p.P287S|PKN2_uc010osq.1_Missense_Mutation_p.P130S|PKN2_uc009wcv.2_Missense_Mutation_p.P287S	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	287	REM 3.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		CAAGAATCATCCCAAAAGCAG	0.368													36	166					0	0	0.025465	0	0
GBP2	2634	broad.mit.edu	37	1	89582689	89582689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:89582689G>A	uc001dmz.1	-	6	1125	c.854C>T	c.(853-855)CCA>CTA	p.P285L	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	285					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		CCCATTGACTGGAATGCCACC	0.458													33	59					0	0	0.017118	0	0
LRRC8B	23507	broad.mit.edu	37	1	90049685	90049685	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:90049685C>T	uc001dni.2	+	7	1983	c.1476C>T	c.(1474-1476)CTC>CTT	p.L492L	LRRC8B_uc001dnh.2_Silent_p.L492L|LRRC8B_uc001dnj.2_Silent_p.L492L	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	492	LRR 2.					integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		TAAAAATCCTCCGCCTGAAAT	0.458													41	62					0	0	0.009718	0	0
BRDT	676	broad.mit.edu	37	1	92445249	92445249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:92445249G>A	uc001dok.3	+	8	1571	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	BRDT_uc001dol.3_Missense_Mutation_p.E408K|BRDT_uc010osz.1_Missense_Mutation_p.E412K|BRDT_uc009wdf.2_Missense_Mutation_p.E335K|BRDT_uc010ota.1_Missense_Mutation_p.E362K|BRDT_uc010otb.1_Missense_Mutation_p.E362K|BRDT_uc001dom.3_Missense_Mutation_p.E408K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		AGCCTCCTCTGAAGGGAACTC	0.393													57	241					0	0	0.014410	0	0
GLMN	11146	broad.mit.edu	37	1	92755792	92755792	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:92755792G>A	uc001dor.2	-	5	472	c.357C>T	c.(355-357)TCC>TCT	p.S119S	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Silent_p.S119S	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	119					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		GAATACTTTGGGATATCTGTT	0.343									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				86	88					0	0	0.014410	0	0
ABCA4	24	broad.mit.edu	37	1	94474416	94474416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:94474416G>A	uc001dqh.2	-	41	5830	c.5726C>T	c.(5725-5727)CCC>CTC	p.P1909L	ABCA4_uc001dqi.1_Missense_Mutation_p.P28L	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1909	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CTCCTTAGTGGGCTCGGCAAT	0.458													137	144					0	0	0.014410	0	0
DPYD	1806	broad.mit.edu	37	1	97564103	97564103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:97564103G>A	uc001drv.2	-	21	2845	c.2708C>T	c.(2707-2709)GCT>GTT	p.A903V		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	903					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGGTGAAAAAGCTACATTTTG	0.358													36	44					0	0	0.027894	0	0
DPYD	1806	broad.mit.edu	37	1	98165025	98165025	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:98165025C>G	uc001drv.2	-	6	699	c.562G>C	c.(562-564)GCA>CCA	p.A188P	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	188					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GCAATCTTTGCAGAATAGGCT	0.423													33	157					0	0	0.015359	0	0
NTNG1	22854	broad.mit.edu	37	1	107691411	107691411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:107691411G>A	uc001dvh.3	+	2	914	c.196G>A	c.(196-198)GAT>AAT	p.D66N	NTNG1_uc001dvf.3_Missense_Mutation_p.D66N|NTNG1_uc010out.1_Missense_Mutation_p.D66N|NTNG1_uc001dvc.3_Missense_Mutation_p.D66N|NTNG1_uc001dvd.1_Missense_Mutation_p.D66N	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	66	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding	p.D66Y(1)		large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		AGTGAAACTCGATCCTCCGGA	0.438													72	87					0	0	0.014410	0	0
KIAA1324	57535	broad.mit.edu	37	1	109745596	109745596	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:109745596C>T	uc001dwq.2	+	23	3140	c.3004C>T	c.(3004-3006)CTG>TTG	p.L1002L	KIAA1324_uc009wey.2_Silent_p.L915L|KIAA1324_uc010ovg.1_3'UTR|KIAA1324_uc001dwr.2_Silent_p.L652L	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	1002	Cytoplasmic (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTCAGTGCCGCTGAAGACATC	0.567													180	199					0	0	0.014410	0	0
SARS	6301	broad.mit.edu	37	1	109777924	109777924	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:109777924C>T	uc001dwu.1	+	7	915	c.840C>T	c.(838-840)CAC>CAT	p.H280H	SARS_uc001dwt.1_Silent_p.H280H|SARS_uc001dwv.1_Silent_p.H280H|SARS_uc001dww.1_Silent_p.H213H|SARS_uc001dwx.1_Silent_p.H232H|SARS_uc009wfa.1_Silent_p.H280H|SARS_uc001dwy.1_Silent_p.H105H|SARS_uc001dwz.1_Silent_p.H105H	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	280					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	CTGCCCTGCACCGGGATGAGT	0.582													373	483					0	0	0.014410	0	0
CELSR2	1952	broad.mit.edu	37	1	109816201	109816201	+	Silent	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:109816201C>A	uc001dxa.3	+	33	8714	c.8653C>A	c.(8653-8655)CGG>AGG	p.R2885R		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2885	Cytoplasmic (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CCCACCGCCCCGGCAGAGCCT	0.697													41	53					4.67007e-22	4.76015e-22	0.008740	1	0
ATXN7L2	127002	broad.mit.edu	37	1	110033550	110033550	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:110033550C>T	uc001dxr.2	+	10	1380	c.1365C>T	c.(1363-1365)ATC>ATT	p.I455I	ATXN7L2_uc001dxs.2_Silent_p.I82I|ATXN7L2_uc001dxt.2_5'UTR	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	455										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		GCAGGAAGATCCCACCGGCAG	0.572											OREG0013635	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	94	495					0	0	0.014410	0	0
AMIGO1	57463	broad.mit.edu	37	1	110050993	110050993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:110050993C>T	uc001dxx.3	-	2	924	c.542G>A	c.(541-543)GGA>GAA	p.G181E		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	181	Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		TAGCTTGGCTCCTTCCTTGAC	0.547													104	407					0	0	0.014410	0	0
CSF1	1435	broad.mit.edu	37	1	110466394	110466394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:110466394C>T	uc001dyu.2	+	6	1564	c.1151C>T	c.(1150-1152)CCC>CTC	p.P384L	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.P384L	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	384	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		AATCACACCCCCCAGAAGACA	0.657											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	165					0	0	0.027894	0	0
ALX3	257	broad.mit.edu	37	1	110607308	110607308	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:110607308C>T	uc001dzb.2	-	2	583	c.495G>A	c.(493-495)CTG>CTA	p.L165L		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3	165	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		CCAGCTCCTCCAGCTGGAATG	0.582													43	191					0	0	0.013114	0	0
KCNA10	3744	broad.mit.edu	37	1	111060588	111060588	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:111060588C>T	uc001dzt.1	-	1	1210	c.822G>A	c.(820-822)GTG>GTA	p.V274V		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	274	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AGGTAGACTCCACCATGAAGA	0.532													51	159					0	0	0.014410	0	0
KCNA10	3744	broad.mit.edu	37	1	111061260	111061260	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:111061260C>T	uc001dzt.1	-	1	538	c.150G>A	c.(148-150)AAG>AAA	p.K50K		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	50						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TGATGAGGATCTTCCCGTTGG	0.557													25	144					0	0	0.007291	0	0
KCNA3	3738	broad.mit.edu	37	1	111216508	111216508	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:111216508G>A	uc001dzv.1	-	1	1148	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	308	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAGCAGTTCGAAGGAGAACC	0.547													45	227					0	0	0.009718	0	0
KCNA3	3738	broad.mit.edu	37	1	111216544	111216544	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:111216544G>A	uc001dzv.1	-	1	1112	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	296	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTCCACCACGAAGAAGGGAT	0.597													40	223					0	0	0.007835	0	0
KCND3	3752	broad.mit.edu	37	1	112525136	112525136	+	Silent	SNP	C	T	T	rs74392775		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:112525136C>T	uc001ebu.1	-	2	693	c.213G>A	c.(211-213)AAG>AAA	p.K71K	KCND3_uc001ebv.1_Silent_p.K71K	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	71	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGAAGAACTCCTTCTCCGTGC	0.607													98	97					0	0	0.014410	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112998653	112998653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:112998653C>T	uc001ebx.2	+	6	767	c.539C>T	c.(538-540)TCC>TTC	p.S180F	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	180	Potential.					actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGCTCTCATCCATGCTAGTG	0.498													73	67					0	0	0.014410	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999393	112999393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:112999393C>T	uc001ebx.2	+	6	1507	c.1279C>T	c.(1279-1281)CCT>TCT	p.P427S	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	427						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AACATCCTCTCCTTGCTCTTC	0.557													134	688					0	0	0.014410	0	0
AMPD1	270	broad.mit.edu	37	1	115220063	115220063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:115220063G>A	uc001efe.1	-	10	1381	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	AMPD1_uc001eff.1_Missense_Mutation_p.P429S	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	433					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CACTCATCAGGACTGCGGCCA	0.567													82	90					0	0	0.014410	0	0
AMPD1	270	broad.mit.edu	37	1	115221019	115221019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:115221019C>T	uc001efe.1	-	8	1111	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	AMPD1_uc001eff.1_Missense_Mutation_p.E339K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	343					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GCAAAAAGTTCCTTTAGGGTC	0.378													103	147					0	0	0.014410	0	0
TSHB	7252	broad.mit.edu	37	1	115576718	115576718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:115576718C>T	uc001efs.1	+	3	355	c.287C>T	c.(286-288)TCC>TTC	p.S96F		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	96					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		CCCTATTTTTCCTATCCTGTT	0.433													108	147					0	0	0.014410	0	0
TSPAN2	10100	broad.mit.edu	37	1	115601542	115601542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:115601542C>T	uc001eft.2	-	5	468	c.406G>A	c.(406-408)GGA>AGA	p.G136R		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	136	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		TTGCCTTTTCCCCTGTCTTTA	0.423													130	188					0	0	0.014410	0	0
CD2	914	broad.mit.edu	37	1	117311214	117311214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:117311214C>T	uc001egu.3	+	5	894	c.865C>T	c.(865-867)CGT>TGT	p.R289C		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	289	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	ACCTGGTCATCGTTCCCAGGC	0.587													76	82					0	0	0.014410	0	0
TTF2	8458	broad.mit.edu	37	1	117618454	117618454	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:117618454C>T	uc001egy.2	+	5	1268	c.1248C>T	c.(1246-1248)TAC>TAT	p.Y416Y	TTF2_uc001egx.1_Silent_p.Y416Y	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	416					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		GGCGTGTCTACCTTACAACAC	0.463													109	85					0	0	0.014410	0	0
TTF2	8458	broad.mit.edu	37	1	117618836	117618836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:117618836C>T	uc001egy.2	+	6	1330	c.1310C>T	c.(1309-1311)CCA>CTA	p.P437L	TTF2_uc001egx.1_Missense_Mutation_p.P437L	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	437					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CAGGCTCTTCCAGACAAGGGT	0.448													39	125					0	0	0.007835	0	0
WARS2	10352	broad.mit.edu	37	1	119575560	119575560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:119575560C>T	uc001ehn.2	-	6	1085	c.1057G>A	c.(1057-1059)GTG>ATG	p.V353M	WARS2_uc010oxf.1_Missense_Mutation_p.V259M|WARS2_uc001ehm.2_3'UTR|WARS2_uc010oxg.1_Missense_Mutation_p.V296M|WARS2_uc010oxh.1_3'UTR	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	353					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	AATTTCTTCACCTCCTGGCAC	0.408													95	95					0	0	0.014410	0	0
HSD3B1	3283	broad.mit.edu	37	1	120057061	120057061	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:120057061C>T	uc001ehv.1	+	4	1060	c.915C>T	c.(913-915)CTC>CTT	p.L305L	HSD3B1_uc001ehw.2_Silent_p.L307L	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	305	Helical; (Potential).				androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	GCTTCCTACTCAGGCCAATTT	0.478													130	139					0	0	0.014410	0	0
ADAM30	11085	broad.mit.edu	37	1	120438357	120438357	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:120438357G>A	uc001eij.2	-	1	757	c.603C>T	c.(601-603)CAC>CAT	p.H201H		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	201	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AGTACTTTGGGTGTTTATAGG	0.403													190	725					0	0	0.014410	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767837	143767837	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:143767837G>A	uc001ejt.2	-	1	45	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	4					protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						AAAAGATGACGGAGTTGACCA	0.393													15	208					0	0	0.028581	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144886268	144886268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:144886268G>A	uc001elw.3	-	23	3257	c.2966C>T	c.(2965-2967)TCC>TTC	p.S989F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1055F|PDE4DIP_uc001elv.3_5'UTR	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	989					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGAAGGAGGGGAAAAAGATGG	0.473			T	PDGFRB	MPD								120	307					0	0	0.014410	0	0
HFE2	148738	broad.mit.edu	37	1	145416898	145416898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:145416898C>T	uc001eni.2	+	4	1568	c.1243C>T	c.(1243-1245)CTT>TTT	p.L415F	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.L189F|HFE2_uc001enk.2_Missense_Mutation_p.L302F|HFE2_uc001enl.2_Missense_Mutation_p.L189F	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	415					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGCTCCACTCCTTTCTGGGCT	0.498													136	218					0	0	0.014410	0	0
PDIA3P	171423	broad.mit.edu	37	1	146651022	146651022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:146651022C>T	uc001epg.1	+	1	1593	c.1330C>T	c.(1330-1332)CCA>TCA	p.P444S		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						TGTGCCTTCTCCATATGAAGT	0.418													49	73					0	0	0.014410	0	0
LOC645166	645166	broad.mit.edu	37	1	148932875	148932875	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:148932875G>A	uc010pbc.1	+	2		c.190G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						GGTGGGAGACGGGTGAGGTAC	0.632													21	386					0	0	0.016522	0	0
RPRD2	23248	broad.mit.edu	37	1	150443485	150443485	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:150443485A>G	uc009wlr.2	+	11	2262	c.2061A>G	c.(2059-2061)TTA>TTG	p.L687L	RPRD2_uc010pcc.1_Silent_p.L661L|RPRD2_uc001eup.3_Silent_p.L661L	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	687	Ser-rich.						protein binding			ovary(1)	1						GCTTAAACTTAAACATCCCAA	0.502													59	113					0	0	0.014410	0	0
CTSS	1520	broad.mit.edu	37	1	150724439	150724439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:150724439C>T	uc001evn.2	-	5	578	c.445G>A	c.(445-447)GAA>AAA	p.E149K	CTSS_uc010pcj.1_Missense_Mutation_p.E99K|CTSS_uc001evo.1_Missense_Mutation_p.E149K	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	149					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			AGCTGTGCTTCCAGGGCCCCC	0.478													47	110					0	0	0.014410	0	0
SEMA6C	10500	broad.mit.edu	37	1	151109466	151109466	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:151109466G>A	uc001ewu.2	-	11	1141	c.841C>T	c.(841-843)CTG>TTG	p.L281L	SEMA6C_uc001ewv.2_Silent_p.L281L|SEMA6C_uc001eww.2_Silent_p.L241L|SEMA6C_uc010pcq.1_Silent_p.L281L|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	281	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CGAAGCTTCAGGAAGGATGTC	0.582													143	258					0	0	0.014410	0	0
SELENBP1	8991	broad.mit.edu	37	1	151338846	151338846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:151338846G>A	uc001exx.2	-	7	795	c.748C>T	c.(748-750)CCC>TCC	p.P250S	SELENBP1_uc010pcy.1_Missense_Mutation_p.P292S|SELENBP1_uc001exy.2_Missense_Mutation_p.P147S|SELENBP1_uc001exz.2_Missense_Mutation_p.P147S|SELENBP1_uc010pcz.1_Missense_Mutation_p.P188S|SELENBP1_uc009wms.2_Missense_Mutation_p.P86S|SELENBP1_uc009wmt.2_Missense_Mutation_p.P147S|SELENBP1_uc001eya.2_Missense_Mutation_p.P186S|SELENBP1_uc009wmu.2_Missense_Mutation_p.P147S	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	250					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATCTCCAAGGGAATAAGCCCA	0.572													123	210					0	0	0.014410	0	0
TDRKH	11022	broad.mit.edu	37	1	151752454	151752454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:151752454G>A	uc009wnb.1	-	4	576	c.394C>T	c.(394-396)CCC>TCC	p.P132S	TDRKH_uc001eyy.2_Intron|TDRKH_uc001ezb.3_Missense_Mutation_p.P128S|TDRKH_uc001ezc.3_Intron|TDRKH_uc001eza.3_Missense_Mutation_p.P132S|TDRKH_uc001ezd.3_Missense_Mutation_p.P132S|TDRKH_uc010pdn.1_Intron	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	132	KH 2.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GATCTCTGGGGAACTGAAAGC	0.488													57	96					0	0	0.014410	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058510	152058510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152058510G>A	uc001ezo.1	-	3	1713	c.1648C>T	c.(1648-1650)CCC>TCC	p.P550S		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	550							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AGGCTGTTGGGAGTTTCAGAA	0.552													88	142					0	0	0.014410	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059329	152059329	+	Missense_Mutation	SNP	C	T	T	rs114173361	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152059329C>T	uc001ezo.1	-	3	894	c.829G>A	c.(829-831)GAA>AAA	p.E277K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	277							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTTCTAACTTCCTGATCTTCA	0.433													122	222					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152127615	152127615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152127615C>T	uc001ezs.1	-	3	2025	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	654	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGTTGGCTATCCTCTTCAGGC	0.507													44	123					0	0	0.010771	0	0
FLG	2312	broad.mit.edu	37	1	152283748	152283748	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152283748T>A	uc001ezu.1	-	3	3650	c.3614A>T	c.(3613-3615)GAT>GTT	p.D1205V	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1205	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGGAGGCATCAGACCTTCC	0.557									Ichthyosis				297	507					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152326553	152326553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152326553C>T	uc001ezw.3	-	3	3782	c.3709G>A	c.(3709-3711)GAA>AAA	p.E1237K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1237	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGTAGTTTCCTGTCTCCCA	0.478													80	157					0	0	0.014410	0	0
KPRP	448834	broad.mit.edu	37	1	152732408	152732408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152732408C>T	uc001fal.1	+	2	402	c.344C>T	c.(343-345)TCT>TTT	p.S115F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	115	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGCCAATCTGAGGTGTCC	0.498													248	418					0	0	0.014410	0	0
LCE1F	353137	broad.mit.edu	37	1	152749094	152749094	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152749094C>G	uc010pdv.1	+	1	247	c.247C>G	c.(247-249)CGT>GGT	p.R83G		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	83	Poly-Arg.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCACAGACGGCGTAGGTCCCA	0.701													31	75					0	0	0.007291	0	0
LCE1E	353135	broad.mit.edu	37	1	152759897	152759897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152759897C>T	uc001fan.2	+	2	175	c.122C>T	c.(121-123)TCT>TTT	p.S41F		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	41	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTCCAGTCTCTTCCTGCTGC	0.557													59	188					0	0	0.014410	0	0
LCE1B	353132	broad.mit.edu	37	1	152785112	152785112	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:152785112T>A	uc001faq.2	+	1	666	c.190T>A	c.(190-192)TCT>ACT	p.S64T		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	64	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGGCTCCAGCTCTGGGGGTTG	0.652													92	169					0	0	0.014410	0	0
SPRR2G	6706	broad.mit.edu	37	1	153122421	153122421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:153122421G>A	uc009wod.1	-	2	287	c.166C>T	c.(166-168)CCT>TCT	p.P56S		NM_001014291	NP_001014313	Q9BYE4	SPR2G_HUMAN	small proline-rich protein 2G	56					keratinization	cornified envelope|cytoplasm					0	all_lung(78;1.78e-30)|Lung NSC(65;7.29e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCACAGGAGGGCATTTATCC	0.547													41	92					0	0	0.008740	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153275062	153275062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:153275062C>T	uc001fbn.1	-	5	604	c.551G>A	c.(550-552)CGA>CAA	p.R184Q		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	184					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAAGCAGATCGTTTGATGAT	0.468													31	129					0	0	0.009535	0	0
NPR1	4881	broad.mit.edu	37	1	153655936	153655936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:153655936C>T	uc001fcs.3	+	6	1769	c.1348C>T	c.(1348-1350)CCT>TCT	p.P450S	NPR1_uc010pdz.1_Missense_Mutation_p.P196S|NPR1_uc010pea.1_5'Flank	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	450	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GTACCCTCCTCCTGACATCCC	0.572													49	116					0	0	0.014410	0	0
SLC27A3	11000	broad.mit.edu	37	1	153750724	153750725	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:153750724_153750725GG>AA	uc001fcz.2	+	5	1455_1456	c.1390_1391GG>AA	c.(1390-1392)GGG>AAG	p.G464K	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	464					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCGGCGCTTCGGGCCCCTGCAG	0.639													54	168					0	0	0.004672	0	0
GATAD2B	57459	broad.mit.edu	37	1	153788833	153788833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:153788833G>A	uc001fdb.3	-	7	1376	c.1132C>T	c.(1132-1134)CAT>TAT	p.H378Y		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	378	CR2.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGCAAGAAATGAAGTAAGGGA	0.502													50	88					0	0	0.014410	0	0
HAX1	10456	broad.mit.edu	37	1	154245239	154245239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:154245239C>T	uc001fes.2	+	1	201	c.40C>T	c.(40-42)CCT>TCT	p.P14S	HAX1_uc001fet.2_Missense_Mutation_p.P14S|HAX1_uc010peo.1_Missense_Mutation_p.P14S|HAX1_uc009wou.2_5'UTR|HAX1_uc009wov.2_5'UTR	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	14	Required for localization in mitochondria (By similarity).					actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTTCGGCTTTCCTGGACCTCG	0.567									Kostmann_syndrome				21	110					0	0	0.012319	0	0
PBXIP1	57326	broad.mit.edu	37	1	154923760	154923760	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:154923760C>T	uc001ffr.2	-	5	416	c.357G>A	c.(355-357)CAG>CAA	p.Q119Q	PBXIP1_uc001ffs.2_Silent_p.Q90Q|PBXIP1_uc010pep.1_Intron|PBXIP1_uc009woy.1_RNA	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	119					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CTTCCAGGTCCTGTGTGTCTG	0.592													35	75					0	0	0.023175	0	0
PYGO2	90780	broad.mit.edu	37	1	154932008	154932008	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:154932008G>A	uc001fft.2	-	3	674	c.468C>T	c.(466-468)CCC>CCT	p.P156P		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	156	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGTTGCCTGGGGGTGGGTAGC	0.637													85	140					0	0	0.014410	0	0
DCST2	127579	broad.mit.edu	37	1	155005177	155005177	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:155005177G>A	uc001fgm.2	-	3	587	c.507C>T	c.(505-507)TTC>TTT	p.F169F	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	169	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTGACCGAAAGAACTTGCGGA	0.473													46	188					0	0	0.014410	0	0
RIT1	6016	broad.mit.edu	37	1	155874197	155874197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:155874197G>A	uc001fmh.1	-	5	521	c.334C>T	c.(334-336)CGT>TGT	p.R112C	RIT1_uc010pgr.1_Missense_Mutation_p.R76C	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	112					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			TTAAACTCACGAACTTCATGG	0.463													43	66					0	0	0.010771	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155935123	155935123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:155935123G>A	uc001fmt.2	-	6	669	c.551C>T	c.(550-552)ACC>ATC	p.T184I	ARHGEF2_uc001fmr.2_Missense_Mutation_p.T157I|ARHGEF2_uc001fms.2_Missense_Mutation_p.T184I|ARHGEF2_uc001fmu.2_Missense_Mutation_p.T229I|ARHGEF2_uc010pgt.1_Missense_Mutation_p.T157I|ARHGEF2_uc010pgu.1_Missense_Mutation_p.T229I	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	184					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CACGGATAGGGTTCGGTTCCG	0.592													42	94					0	0	0.014410	0	0
SEMA4A	64218	broad.mit.edu	37	1	156124465	156124465	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:156124465G>A	uc001fnl.2	+	2	200	c.96G>A	c.(94-96)GGG>GGA	p.G32G	SEMA4A_uc009wrq.2_Silent_p.G32G|SEMA4A_uc001fnm.2_Silent_p.G32G|SEMA4A_uc001fnn.2_Intron|SEMA4A_uc001fno.2_Silent_p.G32G	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	32					axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CGACCGCGGGGGGAGGCGGGC	0.647													15	26					0	0	0.008871	0	0
NES	10763	broad.mit.edu	37	1	156640516	156640516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:156640516G>A	uc001fpq.2	-	4	3597	c.3464C>T	c.(3463-3465)TCC>TTC	p.S1155F		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1155	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGCAGCTCGGAGAACTCTGT	0.632													64	146					0	0	0.014410	0	0
INSRR	3645	broad.mit.edu	37	1	156812000	156812000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:156812000C>T	uc010pht.1	-	19	3555	c.3301G>A	c.(3301-3303)GAC>AAC	p.D1101N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1101	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCCATGCCGTCTGCAATCTCA	0.572													15	51					0	0	0.028581	0	0
INSRR	3645	broad.mit.edu	37	1	156812213	156812213	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:156812213G>A	uc010pht.1	-	18	3468	c.3214C>T	c.(3214-3216)CGA>TGA	p.R1072*	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1072	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGCAAAGATCGAAGATGGCTC	0.592													84	148					0	0	0.014410	0	0
FCRL2	79368	broad.mit.edu	37	1	157736650	157736650	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:157736650A>T	uc001fre.2	-	7	1333	c.1274T>A	c.(1273-1275)ATA>AAA	p.I425K	FCRL2_uc001frd.2_Missense_Mutation_p.I172K|FCRL2_uc010phz.1_Missense_Mutation_p.I425K|FCRL2_uc009wsp.2_Missense_Mutation_p.I141K	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	425	Cytoplasmic (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACAACCTGATATCTTGTGGAA	0.388													42	66					0	0	0.009718	0	0
FCRL2	79368	broad.mit.edu	37	1	157737065	157737065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:157737065C>T	uc001fre.2	-	6	1177	c.1118G>A	c.(1117-1119)GGC>GAC	p.G373D	FCRL2_uc001frd.2_Missense_Mutation_p.G120D|FCRL2_uc010phz.1_Missense_Mutation_p.G373D|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	373	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GGCCCCCAGGCCGTTGTTGGC	0.577													49	131					0	0	0.014410	0	0
FCRL1	115350	broad.mit.edu	37	1	157773789	157773789	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:157773789G>A	uc001frg.2	-	3	278	c.165C>T	c.(163-165)TTC>TTT	p.F55F	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Silent_p.F55F|FCRL1_uc001fri.2_Silent_p.F55F|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	55	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GGGTGTCTCTGAAAAAGCAGA	0.592													38	116					0	0	0.027894	0	0
FCRL1	115350	broad.mit.edu	37	1	157789804	157789804	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:157789804C>T	uc001frg.2	-	1	137	c.24G>A	c.(22-24)TTG>TTA	p.L8L	FCRL1_uc001frh.2_Silent_p.L8L|FCRL1_uc001fri.2_Silent_p.L8L|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	8						integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CACCACAGATCAACAGCAACA	0.527													21	86					0	0	0.018920	0	0
CD1C	911	broad.mit.edu	37	1	158262102	158262102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158262102C>T	uc001fru.2	+	3	849	c.557C>T	c.(556-558)CCC>CTC	p.P186L	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	186	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					AGCACTTGCCCCCGATTTCTC	0.453													103	433					0	0	0.014410	0	0
OR10T2	128360	broad.mit.edu	37	1	158369079	158369079	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158369079T>C	uc010pih.1	-	1	178	c.178A>G	c.(178-180)ATG>GTG	p.M60V		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AAGCCATACATGGGAGTGTGG	0.473													5	43					0	0	0.021553	0	0
OR10K2	391107	broad.mit.edu	37	1	158389972	158389972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158389972G>A	uc010pii.1	-	1	685	c.685C>T	c.(685-687)CCT>TCT	p.P229S		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGTGTGGAAGGAAACTGAAGT	0.448													25	41					0	0	0.021523	0	0
OR10K1	391109	broad.mit.edu	37	1	158435933	158435933	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158435933C>T	uc010pij.1	+	1	582	c.582C>T	c.(580-582)TTC>TTT	p.F194F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ACTCCGGCTTCAGTCAGCTGG	0.478													46	185					0	0	0.014410	0	0
OR6Y1	391112	broad.mit.edu	37	1	158516942	158516942	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158516942C>T	uc010pil.1	-	1	954	c.954G>A	c.(952-954)CAG>CAA	p.Q318Q		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCCCATTTCCCTGGGGCCCAC	0.453													23	62					0	0	0.014323	0	0
SPTA1	6708	broad.mit.edu	37	1	158605815	158605815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158605815C>T	uc001fst.1	-	38	5519	c.5320G>A	c.(5320-5322)GAT>AAT	p.D1774N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1774	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTGCCATATCCAGCACATTC	0.498													60	220					0	0	0.014410	0	0
SPTA1	6708	broad.mit.edu	37	1	158606460	158606460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158606460C>T	uc001fst.1	-	37	5480	c.5281G>A	c.(5281-5283)GAG>AAG	p.E1761K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1761	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCACCAGCTCCCCCTCTAGG	0.363													46	100					0	0	0.014410	0	0
SPTA1	6708	broad.mit.edu	37	1	158615104	158615104	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158615104G>A	uc001fst.1	-	29	4267	c.4068C>T	c.(4066-4068)ATC>ATT	p.I1356I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1356	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCCACTGTCGATAAGTTCTG	0.498													23	71					0	0	0.014323	0	0
SPTA1	6708	broad.mit.edu	37	1	158617436	158617436	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158617436C>T	uc001fst.1	-	27	3988	c.3789G>A	c.(3787-3789)CAG>CAA	p.Q1263Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1263	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCTCCATTTTCTGTCTCTGCA	0.537													26	69					0	0	0.027356	0	0
MNDA	4332	broad.mit.edu	37	1	158817557	158817557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:158817557G>A	uc001fsz.1	+	6	1227	c.1027G>A	c.(1027-1029)GAT>AAT	p.D343N		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	343	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TGAAATACAGGATAATACAGG	0.373													48	65					0	0	0.014410	0	0
AIM2	9447	broad.mit.edu	37	1	159035904	159035904	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:159035904C>T	uc001ftj.1	-	4	857	c.612G>A	c.(610-612)AAG>AAA	p.K204K		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	204	HIN-200.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					TAATTATTCTCTTTGGAATGA	0.358													69	105					0	0	0.014410	0	0
OR10J5	127385	broad.mit.edu	37	1	159505366	159505366	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:159505366C>T	uc010piw.1	-	1	432	c.432G>A	c.(430-432)CTG>CTA	p.L144L		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					ACCCACACACCAGCTGGGCAC	0.507													40	68					0	0	0.025465	0	0
CCDC19	25790	broad.mit.edu	37	1	159846350	159846350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:159846350G>A	uc001fui.2	-	10	1366	c.1348C>T	c.(1348-1350)CTT>TTT	p.L450F	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.L365F|CCDC19_uc001ful.2_Missense_Mutation_p.L365F|CCDC19_uc009wtc.1_3'UTR	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	450	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TCCTACCGAAGAATCCTCTCG	0.527													12	38					0	0	0.020292	0	0
IGSF9	57549	broad.mit.edu	37	1	159898714	159898714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:159898714C>T	uc001fur.2	-	19	2662	c.2464G>A	c.(2464-2466)GAT>AAT	p.D822N	IGSF9_uc001fuq.2_Missense_Mutation_p.D806N|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	822	Cytoplasmic (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CCGGCAGGATCCCCCCAGAGC	0.672													10	23					0	0	0.006214	0	0
SLAMF9	89886	broad.mit.edu	37	1	159923181	159923181	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:159923181C>T	uc001fus.2	-	2	426	c.309G>A	c.(307-309)GAG>GAA	p.E103E	SLAMF9_uc009wtd.2_Silent_p.E103E|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	103	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCCCTGAATCCTCCCAGCTCA	0.502													51	128					0	0	0.014410	0	0
ATP1A2	477	broad.mit.edu	37	1	160097516	160097516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160097516C>T	uc001fvc.2	+	8	1055	c.923C>T	c.(922-924)TCC>TTC	p.S308F	ATP1A2_uc001fvb.2_Missense_Mutation_p.S308F|ATP1A2_uc010piz.1_Missense_Mutation_p.S153F|ATP1A2_uc001fvd.2_Missense_Mutation_p.S44F|ATP1A2_uc009wtg.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	308	Extracellular (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TTCGTGCTCTCCCTCATCCTG	0.572													122	228					0	0	0.014410	0	0
ATP1A4	480	broad.mit.edu	37	1	160143376	160143376	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160143376C>T	uc001fve.3	+	13	2339	c.1860C>T	c.(1858-1860)ATC>ATT	p.I620I	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Silent_p.I123I	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	620	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCCAGGTGATCATGGTAACAG	0.527													50	159					0	0	0.014410	0	0
CASQ1	844	broad.mit.edu	37	1	160168515	160168515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160168515G>A	uc010pja.1	+	8	1134	c.877G>A	c.(877-879)GAT>AAT	p.D293N		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	293						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGAGGAAGCTGATCCTGGTGA	0.537													70	137					0	0	0.014410	0	0
PEX19	5824	broad.mit.edu	37	1	160252837	160252837	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160252837G>A	uc001fvs.2	-	3	270	c.243C>T	c.(241-243)TCC>TCT	p.S81S	DCAF8_uc010pjc.1_5'UTR|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_5'UTR	NM_002857	NP_002848	P40855	PEX19_HUMAN	peroxisomal biogenesis factor 19 isoform a	81	Necessary for PEX19 function on peroxisome biogenesis.				peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport	brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane	protein binding|protein N-terminus binding				0	all_cancers(52;1.27e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGTGGCTTGGGAAGCCAGTT	0.537													37	123					0	0	0.023175	0	0
CD48	962	broad.mit.edu	37	1	160681539	160681539	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160681539A>G	uc001fwn.2	-	1	47	c.15T>C	c.(13-15)GGT>GGC	p.G5G	CD48_uc001fwo.1_Silent_p.G5G|CD48_uc001fwp.2_Silent_p.G5G	NM_001778	NP_001769	P09326	CD48_HUMAN	CD48 molecule precursor	5					blood coagulation|defense response|leukocyte migration	integral to plasma membrane|membrane raft	protein binding				0	all_cancers(52;2.18e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ACGAATCCCAACCTCTGGAGC	0.512													9	39					0	0	0.004482	0	0
LY9	4063	broad.mit.edu	37	1	160766091	160766091	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:160766091C>T	uc001fwu.2	+	1	164	c.114C>T	c.(112-114)TTC>TTT	p.F38F	LY9_uc001fwt.2_Silent_p.F38F|LY9_uc010pjs.1_Silent_p.F38F|LY9_uc001fwv.2_Silent_p.F38F|LY9_uc001fww.2_Silent_p.F38F|LY9_uc001fwx.2_Silent_p.F38F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	38					cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTCTCCTCTTCCTGCTCATGG	0.483													134	213					0	0	0.014410	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161017842	161017842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161017842C>T	uc001fxl.2	-	12	3315	c.2969G>A	c.(2968-2970)AGG>AAG	p.R990K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Missense_Mutation_p.R779K|ARHGAP30_uc001fxm.2_Missense_Mutation_p.R836K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.R663K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	990					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACCCCCATTCCTCCAAGAGGA	0.597													99	148					0	0	0.014410	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018253	161018253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161018253C>T	uc001fxl.2	-	12	2904	c.2558G>A	c.(2557-2559)GGG>GAG	p.G853E	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G699E|ARHGAP30_uc009wtx.2_Missense_Mutation_p.G526E	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	853	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			TAAATAGTACCCTCCAGCCCT	0.562													104	209					0	0	0.014410	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018572	161018572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161018572C>T	uc001fxl.2	-	12	2585	c.2239G>A	c.(2239-2241)GAA>AAA	p.E747K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E593K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E420K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	747	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ATTTCTTTTTCCTTCTCATCT	0.488													151	498					0	0	0.014410	0	0
KLHDC9	126823	broad.mit.edu	37	1	161069387	161069387	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161069387G>A	uc001fxr.2	+	3	860	c.688_splice	c.e3-1	p.E230_splice	KLHDC9_uc001fxq.2_Splice_Site|KLHDC9_uc001fxs.2_Missense_Mutation_p.G236R	NM_152366	NP_689579	Q8NEP7	KLDC9_HUMAN	kelch/ankyrin repeat containing cyclin A1												0	all_cancers(52;1.28e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TTCTCCCCAAGGAGGAACCAC	0.507													201	659					0	0	0.014410	0	0
HSPA7	3311	broad.mit.edu	37	1	161576413	161576413	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161576413G>A	uc010pkp.1	+	1	565	c.333G>A	c.(331-333)GGG>GGA	p.G111G		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						GCTACCGCGGGGAGGACAAGA	0.642													26	69					0	0	0.008361	0	0
FCRLA	84824	broad.mit.edu	37	1	161681153	161681153	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:161681153A>G	uc001gbe.2	+	4	699	c.457A>G	c.(457-459)ATC>GTC	p.I153V	FCRLA_uc001gbd.2_Missense_Mutation_p.I147V|FCRLA_uc001gbf.2_Intron|FCRLA_uc001gbg.2_Intron|FCRLA_uc009wuo.2_Intron|FCRLA_uc009wup.2_Intron|FCRLA_uc009wuq.2_Intron	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	130	Ig-like C2-type 1.				cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			GGAATTCTCCATCACCGTGGT	0.592													23	52					0	0	0.024334	0	0
LMX1A	4009	broad.mit.edu	37	1	165183036	165183036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:165183036C>T	uc001gcy.1	-	4	732	c.511G>A	c.(511-513)GAA>AAA	p.E171K	LMX1A_uc001gcz.1_Missense_Mutation_p.E171K|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	171						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AGACTTTCTTCATCATCACTT	0.498													122	192					0	0	0.014410	0	0
LRRC52	440699	broad.mit.edu	37	1	165513878	165513878	+	Silent	SNP	G	A	A	rs149047999	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:165513878G>A	uc001gde.2	+	1	401	c.345G>A	c.(343-345)TCG>TCA	p.S115S	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	115	LRR 3.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					ACCTAACCTCGATCTCCCCAT	0.493													126	195					0	0	0.014410	0	0
MAEL	84944	broad.mit.edu	37	1	166991034	166991034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:166991034C>T	uc001gdy.1	+	12	1318	c.1247C>T	c.(1246-1248)TCA>TTA	p.S416L	MAEL_uc001gdz.1_Missense_Mutation_p.S385L|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	416					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TGTGACACTTCACTCTCACCT	0.413													33	66					0	0	0.012213	0	0
DUSP27	92235	broad.mit.edu	37	1	167083001	167083001	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:167083001C>T	uc001geb.1	+	2	165	c.165C>T	c.(163-165)CAC>CAT	p.H55H		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	55					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AACCCATTCACCTCTCCTCAG	0.453													136	264					0	0	0.014410	0	0
DUSP27	92235	broad.mit.edu	37	1	167097833	167097833	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:167097833G>A	uc001geb.1	+	5	3465	c.3465G>A	c.(3463-3465)AGG>AGA	p.R1155R		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1155					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TGCAGAAAAGGAGGGAGGACT	0.527													16	62					0	0	0.004990	0	0
ADCY10	55811	broad.mit.edu	37	1	167852757	167852757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:167852757G>A	uc001ger.2	-	9	1236	c.938C>T	c.(937-939)GCC>GTC	p.A313V	ADCY10_uc009wvk.2_Missense_Mutation_p.A221V|ADCY10_uc010plj.1_Missense_Mutation_p.A160V|ADCY10_uc009wvl.2_Missense_Mutation_p.A312V|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	313	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding	p.A313T(1)		central_nervous_system(2)|ovary(1)	3						ATCCTGGATGGCTGGGCCTAT	0.443													51	195					0	0	0.014410	0	0
C1orf114	57821	broad.mit.edu	37	1	169388305	169388305	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169388305G>A	uc001gga.1	-	4	1329	c.1161C>T	c.(1159-1161)GTC>GTT	p.V387V	C1orf114_uc001gfz.1_Silent_p.V387V|C1orf114_uc009wvq.1_Silent_p.V387V|C1orf114_uc001ggb.2_Silent_p.V387V	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	387											0	all_hematologic(923;0.208)					TCATTTCTAAGACCTGCTCTC	0.343													23	93					0	0	0.018920	0	0
F5	2153	broad.mit.edu	37	1	169483583	169483583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169483583G>A	uc001ggg.1	-	25	6788	c.6643C>T	c.(6643-6645)CGC>TGC	p.R2215C		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	2215	F5/8 type C 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AGTTCCAGGCGAAGTGCAATA	0.383													19	35					0	0	0.012319	0	0
F5	2153	broad.mit.edu	37	1	169519046	169519046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169519046C>T	uc001ggg.1	-	10	1749	c.1604G>A	c.(1603-1605)GGA>GAA	p.G535E	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	535	F5/8 type A 2.	Cleavage; by activated protein C.			cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TACCTGTATTCCTTGCCTGTC	0.433													19	45					0	0	0.007413	0	0
SELP	6403	broad.mit.edu	37	1	169578884	169578884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169578884C>T	uc001ggi.3	-	8	1256	c.1191G>A	c.(1189-1191)ATG>ATA	p.M397I	SELP_uc001ggh.2_Missense_Mutation_p.M232I|SELP_uc009wvr.2_Missense_Mutation_p.M397I	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	397	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GAGAGCAATCCATGCTTCCGT	0.507													14	39					0	0	0.024245	0	0
SELP	6403	broad.mit.edu	37	1	169581587	169581587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169581587G>A	uc001ggi.3	-	6	894	c.829C>T	c.(829-831)CAT>TAT	p.H277Y	SELP_uc001ggh.2_Missense_Mutation_p.H112Y|SELP_uc009wvr.2_Missense_Mutation_p.H277Y	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	277	Extracellular (Potential).|Sushi 2.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	TTTGCAGAATGAAGGCAGGTC	0.488													38	53					0	0	0.021022	0	0
SELE	6401	broad.mit.edu	37	1	169701077	169701077	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:169701077C>A	uc001ggm.3	-	4	585	c.428G>T	c.(427-429)TGT>TTT	p.C143F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	143	EGF-like.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGTATTGGTACAGGCAGCTAC	0.443													9	43					2.17888e-05	2.20605e-05	0.006214	1	0
FMO2	2327	broad.mit.edu	37	1	171168502	171168502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:171168502G>A	uc001ghk.1	+	5	619	c.502G>A	c.(502-504)GGC>AGC	p.G168S	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	168					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAGGTTCAAAGGCCAATATTT	0.448													39	88					0	0	0.008740	0	0
FMO1	2326	broad.mit.edu	37	1	171251360	171251360	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:171251360C>T	uc009wvz.2	+	7	1207	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F	FMO1_uc010pme.1_Silent_p.F294F|FMO1_uc001ghl.2_Silent_p.F357F|FMO1_uc001ghm.2_Silent_p.F357F|FMO1_uc001ghn.2_Silent_p.F357F	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	357					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGTATATCTTCCCTGCACATC	0.483													47	75					0	0	0.014410	0	0
FMO1	2326	broad.mit.edu	37	1	171251419	171251419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:171251419C>T	uc009wvz.2	+	7	1266	c.1130C>T	c.(1129-1131)TCC>TTC	p.S377F	FMO1_uc010pme.1_Missense_Mutation_p.S314F|FMO1_uc001ghl.2_Missense_Mutation_p.S377F|FMO1_uc001ghm.2_Missense_Mutation_p.S377F|FMO1_uc001ghn.2_Missense_Mutation_p.S377F	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	377					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCCTTGGGCTCCATGATACCT	0.478													17	84					0	0	0.007413	0	0
FMO1	2326	broad.mit.edu	37	1	171254340	171254340	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:171254340G>A	uc009wvz.2	+	9	1393	c.1257_splice	c.e9-1	p.W419_splice	FMO1_uc010pme.1_Splice_Site_p.W356_splice|FMO1_uc001ghl.2_Splice_Site_p.W419_splice|FMO1_uc001ghm.2_Splice_Site_p.W419_splice|FMO1_uc001ghn.2_Splice_Site_p.G395_splice	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1						NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTTTTATAAAGGTTTGGCTTG	0.368													24	69					0	0	0.016522	0	0
MYOC	4653	broad.mit.edu	37	1	171605543	171605543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:171605543C>T	uc001ghu.2	-	3	1059	c.1037G>A	c.(1036-1038)AGA>AAA	p.R346K	MYOC_uc010pmk.1_Missense_Mutation_p.R288K	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	346	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CAGCTCATATCTTATGACAGT	0.532													68	77					0	0	0.014410	0	0
FASLG	356	broad.mit.edu	37	1	172628510	172628510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:172628510C>T	uc001gis.2	+	1	326	c.169C>T	c.(169-171)CCG>TCG	p.P57S	FASLG_uc001git.2_Missense_Mutation_p.P57S	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	57	Pro-rich.|Poly-Pro.|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						actaccacctccgccgccgcc	0.348													19	22					0	0	0.007413	0	0
SLC9A11	284525	broad.mit.edu	37	1	173542434	173542434	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:173542434T>C	uc001giz.2	-	9	1356	c.933A>G	c.(931-933)GAA>GAG	p.E311E	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	311	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATATTAAATGTTCATATACAG	0.269													25	33					0	0	0.027356	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564535	176564535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:176564535G>A	uc001gkz.2	+	3	2959	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K	PAPPA2_uc001gky.1_Missense_Mutation_p.E599K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	599	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTGTGACCCCGAGTGTGAGCA	0.612													68	108					0	0	0.014410	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659422	176659422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:176659422C>T	uc001gkz.2	+	5	3451	c.2287C>T	c.(2287-2289)CCA>TCA	p.P763S	PAPPA2_uc001gky.1_Missense_Mutation_p.P763S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	763					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGAGACAGTGCCATCCATGGA	0.552													63	111					0	0	0.014410	0	0
ASTN1	460	broad.mit.edu	37	1	176863760	176863760	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:176863760G>A	uc001glc.2	-	17	3090	c.2878C>T	c.(2878-2880)CTG>TTG	p.L960L	ASTN1_uc001glb.1_Silent_p.L960L|ASTN1_uc001gld.1_Silent_p.L960L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	968					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ACCTCCAGCAGAACCGGCTCA	0.612													40	115					0	0	0.009718	0	0
FAM5B	57795	broad.mit.edu	37	1	177226312	177226312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177226312G>A	uc001glf.2	+	4	773	c.461G>A	c.(460-462)GGA>GAA	p.G154E	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Missense_Mutation_p.G49E	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	154						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TTCACCATAGGAGAAGAGTCC	0.493													12	64					0	0	0.013537	0	0
FAM5B	57795	broad.mit.edu	37	1	177245506	177245506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177245506G>A	uc001glf.2	+	6	1260	c.948G>A	c.(946-948)ATG>ATA	p.M316I	FAM5B_uc010pna.1_Missense_Mutation_p.M66I|FAM5B_uc001glg.2_Missense_Mutation_p.M211I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	316						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TCCAGGCCATGGAGGACAGCC	0.562													25	68					0	0	0.021523	0	0
FAM5B	57795	broad.mit.edu	37	1	177249596	177249596	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177249596G>A	uc001glf.2	+	8	1596	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G	FAM5B_uc001glg.2_Silent_p.G323G	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	428						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TCTACTGTGGGGAAAGCACCT	0.542													81	100					0	0	0.014410	0	0
FAM5B	57795	broad.mit.edu	37	1	177249876	177249876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177249876G>A	uc001glf.2	+	8	1876	c.1564G>A	c.(1564-1566)GAT>AAT	p.D522N	FAM5B_uc001glg.2_Missense_Mutation_p.D417N	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	522						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCAGAAGCAGGATAGCCGCAT	0.577													35	55					0	0	0.012213	0	0
FAM5B	57795	broad.mit.edu	37	1	177250385	177250385	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177250385C>T	uc001glf.2	+	8	2385	c.2073C>T	c.(2071-2073)CCC>CCT	p.P691P	FAM5B_uc001glg.2_Silent_p.P586P	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	691						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ACAGCCTGCCCTTTGACCCAG	0.478													82	253					0	0	0.014410	0	0
SEC16B	89866	broad.mit.edu	37	1	177902403	177902403	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:177902403G>A	uc001gli.1	-	22	2859	c.2769C>T	c.(2767-2769)ACC>ACT	p.T923T	SEC16B_uc001glk.1_Silent_p.T600T|SEC16B_uc009wwy.1_Silent_p.T478T|SEC16B_uc001glh.1_Silent_p.T582T|SEC16B_uc009wwz.1_Silent_p.T582T|SEC16B_uc001glj.1_Silent_p.T924T	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	923					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						ATGCGTTCTTGGTGGGCTTCG	0.577													7	16					0	0	0.003080	0	0
RASAL2	9462	broad.mit.edu	37	1	178389739	178389739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:178389739C>T	uc001glr.2	+	3	339	c.214C>T	c.(214-216)CGC>TGC	p.R72C	RASAL2_uc009wxb.2_Missense_Mutation_p.R220C|RASAL2_uc001glq.2_Missense_Mutation_p.R220C	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	72	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						TCCATCCCTTCGCAGTACAGA	0.413													17	18					0	0	0.004990	0	0
C1orf125	126859	broad.mit.edu	37	1	179414159	179414159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:179414159G>A	uc001gmo.2	+	16	1745	c.1618G>A	c.(1618-1620)GAT>AAT	p.D540N	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Missense_Mutation_p.D328N|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.D540N	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	540											0						GTCAAAATACGATACTCTCAA	0.383													42	137					0	0	0.014410	0	0
TDRD5	163589	broad.mit.edu	37	1	179620077	179620077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:179620077G>A	uc001gnf.1	+	12	2126	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K	TDRD5_uc010pnp.1_Missense_Mutation_p.E626K|TDRD5_uc001gnh.1_Missense_Mutation_p.E181K	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	626					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGTAGTGGATGAATATGTAGA	0.398													59	167					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181680125	181680125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:181680125G>A	uc001gow.2	+	8	1256	c.1091G>A	c.(1090-1092)CGA>CAA	p.R364Q	CACNA1E_uc009wxs.2_Missense_Mutation_p.R271Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	364	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTGGAGAACCGAAGGGCTTTC	0.537													28	99					0	0	0.010818	0	0
CACNA1E	777	broad.mit.edu	37	1	181687205	181687205	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:181687205C>T	uc001gow.2	+	12	1705	c.1540C>T	c.(1540-1542)CTG>TTG	p.L514L	CACNA1E_uc009wxs.2_Silent_p.L421L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	514	Helical; Name=S2 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGCAGAATTTCTGTTTCTGGG	0.463													9	24					0	0	0.006214	0	0
CACNA1E	777	broad.mit.edu	37	1	181702150	181702150	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:181702150G>A	uc001gow.2	+	20	3093	c.2928G>A	c.(2926-2928)GAG>GAA	p.E976E	CACNA1E_uc009wxs.2_Silent_p.E864E|CACNA1E_uc001gox.1_Silent_p.E202E|CACNA1E_uc009wxt.2_Silent_p.E202E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	976	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCCAAGAAGAGAGAGCCCAGG	0.512													14	56					0	0	0.020292	0	0
CACNA1E	777	broad.mit.edu	37	1	181732646	181732646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:181732646G>A	uc001gow.2	+	34	4959	c.4794G>A	c.(4792-4794)TGG>TGA	p.W1598*	CACNA1E_uc009wxs.2_Nonsense_Mutation_p.W1486*|CACNA1E_uc001gox.1_Nonsense_Mutation_p.W824*|CACNA1E_uc009wxt.2_Nonsense_Mutation_p.W824*	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1598	Cytoplasmic (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTTTGCTGTGGACCTTTGTGC	0.493													11	32					0	0	0.008291	0	0
C1orf14	81626	broad.mit.edu	37	1	182908646	182908646	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:182908646T>A	uc001gpu.2	-	4	1098	c.813A>T	c.(811-813)GAA>GAT	p.E271D	C1orf14_uc001gpv.2_Missense_Mutation_p.E152D|C1orf14_uc010pnz.1_Missense_Mutation_p.E129D|C1orf14_uc001gpw.2_5'UTR	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	343											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TCTCACAACTTTCTTCATCAT	0.289													12	53					0	0	0.013537	0	0
NCF2	4688	broad.mit.edu	37	1	183546757	183546757	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:183546757G>A	uc001gqj.3	-	3	618	c.343C>T	c.(343-345)CAG>TAG	p.Q115*	NCF2_uc010pod.1_Nonsense_Mutation_p.Q115*|NCF2_uc010poe.1_Nonsense_Mutation_p.Q115*|NCF2_uc001gqk.3_Nonsense_Mutation_p.Q115*	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	115					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						AGCTTGAACTGGAGCCCCAGG	0.517													61	179					0	0	0.014410	0	0
FAM129A	116496	broad.mit.edu	37	1	184764306	184764306	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:184764306C>T	uc001gra.2	-	14	2786	c.2592G>A	c.(2590-2592)GAG>GAA	p.E864E	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	864	Glu-rich.				negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GCCCTCCCATCTCTTCTTGTT	0.577													44	141					0	0	0.009718	0	0
RNF2	6045	broad.mit.edu	37	1	185056719	185056719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:185056719C>T	uc001grc.1	+	2	267	c.34C>T	c.(34-36)CCA>TCA	p.P12S	RNF2_uc001grd.1_Missense_Mutation_p.P12S	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	12	Interaction with HIP2.				histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		CGGAACTCAACCATTAAGCAA	0.368													77	123					0	0	0.014410	0	0
FAM5C	339479	broad.mit.edu	37	1	190195259	190195259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:190195259C>T	uc001gse.1	-	6	1146	c.914G>A	c.(913-915)CGA>CAA	p.R305Q	FAM5C_uc010pot.1_Missense_Mutation_p.R203Q	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	305						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TTCAGTTATTCGAAGAAGATT	0.373													11	25					0	0	0.013537	0	0
FAM5C	339479	broad.mit.edu	37	1	190250853	190250853	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:190250853G>A	uc001gse.1	-	3	496	c.264C>T	c.(262-264)AAC>AAT	p.N88N	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	88						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAACTGCAAGGTTATTTACTT	0.408													8	22					0	0	0.008291	0	0
FAM5C	339479	broad.mit.edu	37	1	190423983	190423983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:190423983G>A	uc001gse.1	-	2	270	c.38C>T	c.(37-39)TCT>TTT	p.S13F	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	13						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGCCATCAGAGAGAACAATTC	0.498													15	42					0	0	0.007413	0	0
CFHR2	3080	broad.mit.edu	37	1	196918596	196918596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:196918596G>A	uc001gtq.1	+	2	147	c.70G>A	c.(70-72)GAT>AAT	p.D24N	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	24	Sushi 1.					extracellular region				skin(2)|ovary(1)	3						AATGTTCTGTGATTTTCCAAA	0.284													14	43					0	0	0.024245	0	0
F13B	2165	broad.mit.edu	37	1	197026446	197026446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:197026446C>T	uc001gtt.1	-	6	999	c.955G>A	c.(955-957)GGA>AGA	p.G319R		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	319	Sushi 5.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTCCATTTTCCATCTTCACAA	0.358													21	69					0	0	0.016522	0	0
ASPM	259266	broad.mit.edu	37	1	197097687	197097687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:197097687G>A	uc001gtu.2	-	10	3126	c.2869C>T	c.(2869-2871)CCA>TCA	p.P957S	ASPM_uc001gtv.2_Missense_Mutation_p.P957S|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	957	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCATCAAATGGTGTCTGAACA	0.393													28	81					0	0	0.007291	0	0
CRB1	23418	broad.mit.edu	37	1	197390665	197390665	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:197390665C>T	uc001gtz.2	+	6	1842	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	CRB1_uc010poz.1_Silent_p.F500F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.F457F|CRB1_uc010ppb.1_Silent_p.F569F|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.F50F|CRB1_uc001gub.1_Silent_p.F218F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	569	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGTGGCATTTCGTGGAGGTAA	0.453													68	102					0	0	0.014410	0	0
CRB1	23418	broad.mit.edu	37	1	197390744	197390744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:197390744C>T	uc001gtz.2	+	6	1921	c.1786C>T	c.(1786-1788)CCT>TCT	p.P596S	CRB1_uc010poz.1_Missense_Mutation_p.P527S|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.P484S|CRB1_uc010ppb.1_Missense_Mutation_p.P596S|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.P77S|CRB1_uc001gub.1_Missense_Mutation_p.P245S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	596	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CGCGAAAGCTCCTACTCCACT	0.458													43	131					0	0	0.009718	0	0
PTPRC	5788	broad.mit.edu	37	1	198685852	198685852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:198685852G>A	uc001gur.1	+	13	1507	c.1327G>A	c.(1327-1329)GAT>AAT	p.D443N	PTPRC_uc001gus.1_Missense_Mutation_p.D395N|PTPRC_uc001gut.1_Missense_Mutation_p.D282N|PTPRC_uc009wzf.1_Missense_Mutation_p.D331N|PTPRC_uc010ppg.1_Missense_Mutation_p.D379N	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	443	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GATCAAATATGATTTGCAAAA	0.318													37	93					0	0	0.021022	0	0
PTPRC	5788	broad.mit.edu	37	1	198701611	198701611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:198701611G>A	uc001gur.1	+	20	2242	c.2062G>A	c.(2062-2064)GAT>AAT	p.D688N	PTPRC_uc001gus.1_Missense_Mutation_p.D640N|PTPRC_uc001gut.1_Missense_Mutation_p.D527N|PTPRC_uc009wzf.1_Missense_Mutation_p.D576N|PTPRC_uc010ppg.1_Missense_Mutation_p.D624N	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	688	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TTAAACAGATGATTATAACCG	0.318													4	10					0	0	0.009096	0	0
PTPRC	5788	broad.mit.edu	37	1	198703337	198703337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:198703337C>T	uc001gur.1	+	21	2329	c.2149C>T	c.(2149-2151)CCC>TCC	p.P717S	PTPRC_uc001gus.1_Missense_Mutation_p.P669S|PTPRC_uc001gut.1_Missense_Mutation_p.P556S|PTPRC_uc010ppg.1_Missense_Mutation_p.P653S	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	717	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TTTCAAAGAACCCAGGAAATA	0.299													8	29					0	0	0.003080	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200818995	200818995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:200818995C>T	uc001gvl.2	+	12	3401	c.3131C>T	c.(3130-3132)TCC>TTC	p.S1044F	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.S1033F|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.S1017F	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1044						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTAAAGGAATCCAAACCTAAA	0.403													30	114					0	0	0.010818	0	0
C1orf106	55765	broad.mit.edu	37	1	200868714	200868714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:200868714C>T	uc001gvo.2	+	3	454	c.424C>T	c.(424-426)CTT>TTT	p.L142F	C1orf106_uc010ppm.1_Missense_Mutation_p.L57F	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	142	Potential.									skin(2)|ovary(1)	3						GAGACTCTGCCTTCGGGAAGC	0.647													14	33					0	0	0.020292	0	0
KIF21B	23046	broad.mit.edu	37	1	200948786	200948786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:200948786C>T	uc001gvs.1	-	30	4354	c.4037G>A	c.(4036-4038)GGC>GAC	p.G1346D	KIF21B_uc001gvr.1_Missense_Mutation_p.G1333D|KIF21B_uc009wzl.1_Missense_Mutation_p.G1346D|KIF21B_uc010ppn.1_Missense_Mutation_p.G1333D	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1346	WD 2.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTTGGGGTGGCCCTTTAGAGC	0.572											OREG0014066	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	134	480					0	0	0.014410	0	0
KIF21B	23046	broad.mit.edu	37	1	200960046	200960046	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:200960046G>A	uc001gvs.1	-	18	3003	c.2686C>T	c.(2686-2688)CGA>TGA	p.R896*	KIF21B_uc001gvr.1_Nonsense_Mutation_p.R896*|KIF21B_uc009wzl.1_Nonsense_Mutation_p.R896*|KIF21B_uc010ppn.1_Nonsense_Mutation_p.R896*	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	896					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCACCTTACCGGGCAGGACGG	0.647													61	115					0	0	0.014410	0	0
KIF21B	23046	broad.mit.edu	37	1	200973971	200973971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:200973971C>T	uc001gvs.1	-	6	1140	c.823G>A	c.(823-825)GCC>ACC	p.A275T	KIF21B_uc001gvr.1_Missense_Mutation_p.A275T|KIF21B_uc009wzl.1_Missense_Mutation_p.A275T|KIF21B_uc010ppn.1_Missense_Mutation_p.A275T|KIF21B_uc001gvt.1_Missense_Mutation_p.A58T	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	275	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCTGAGCCGGCCAGGTCCACA	0.592													34	91					0	0	0.013726	0	0
TMEM9	252839	broad.mit.edu	37	1	201104908	201104908	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:201104908G>A	uc001gvw.2	-	6	757	c.435C>T	c.(433-435)CTC>CTT	p.L145L	TMEM9_uc001gvx.2_Silent_p.L145L|TMEM9_uc001gvy.2_Silent_p.L145L|TMEM9_uc010ppo.1_Silent_p.L170L|TMEM9_uc001gvz.2_Silent_p.L148L|TMEM9_uc001gwa.2_Silent_p.L145L	NM_016456	NP_057540	Q9P0T7	TMEM9_HUMAN	transmembrane protein 9 precursor	145	Cytoplasmic (Potential).				transport	integral to membrane|late endosome membrane|lysosomal membrane					0		Breast(1374;0.000301)				GGGGTCCCCCGAGGGATGCAG	0.582													22	47					0	0	0.016522	0	0
IGFN1	91156	broad.mit.edu	37	1	201185804	201185804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:201185804C>T	uc001gwc.2	+	5	1770	c.998C>T	c.(997-999)ACC>ATC	p.T333I	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGGAAGTATACCTTCCGAGTG	0.642													73	95					0	0	0.014410	0	0
LMOD1	25802	broad.mit.edu	37	1	201869499	201869499	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:201869499C>T	uc001gxb.2	-	2	890	c.642G>A	c.(640-642)GTG>GTA	p.V214V	LMOD1_uc010ppu.1_Silent_p.V163V	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	214	4.|8 X approximate tandem repeats.				muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						ctttcttggccacctccttca	0.154													6	14					0	0	0.021553	0	0
PTPN7	5778	broad.mit.edu	37	1	202127303	202127303	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:202127303G>A	uc001gxm.1	-	3	380	c.249C>T	c.(247-249)ACC>ACT	p.T83T	PTPN7_uc001gxl.1_Silent_p.T122T|PTPN7_uc001gxn.1_Silent_p.T83T|PTPN7_uc010ppv.1_Intron|PTPN7_uc010ppw.1_Silent_p.T31T|PTPN7_uc010ppx.1_Silent_p.T157T|PTPN7_uc010ppy.1_RNA|PTPN7_uc001gxo.1_Silent_p.T35T	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	83						cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						GGGCCCAGCGGGTAAGGGGGT	0.597													52	93					0	0	0.014410	0	0
MYBPH	4608	broad.mit.edu	37	1	203143639	203143639	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:203143639G>A	uc001gzh.1	-	3	486	c.427C>T	c.(427-429)CTG>TTG	p.L143L	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	143	Fibronectin type-III 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		GACACGCGCAGGAGGAACTTG	0.637													20	68					0	0	0.012319	0	0
CHI3L1	1116	broad.mit.edu	37	1	203152894	203152895	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:203152894_203152895GG>AA	uc001gzi.2	-	5	510_511	c.339_340CC>TT	c.(337-342)ACCCAG>ACTTAG	p.Q114*	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_5'Flank|CHI3L1_uc001gzj.2_Nonsense_Mutation_p.Q114*	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	114					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						CGGCGACTCTGGGTGTTGGAGG	0.55													40	117					0	0	0.004672	0	0
OPTC	26254	broad.mit.edu	37	1	203465352	203465352	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:203465352C>T	uc001gzu.1	+	2	335	c.219C>T	c.(217-219)GAC>GAT	p.D73D		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	73						proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			ATTATGGGGACCAACTCCCCG	0.552													32	66					0	0	0.008361	0	0
ATP2B4	493	broad.mit.edu	37	1	203676236	203676236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:203676236C>T	uc001gzw.2	+	9	2083	c.1199C>T	c.(1198-1200)CCC>CTC	p.P400L	ATP2B4_uc001gzv.2_Missense_Mutation_p.P400L|ATP2B4_uc009xaq.2_Missense_Mutation_p.P400L	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	400	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GAGTGTACTCCCATCTACATC	0.493													22	62					0	0	0.012319	0	0
LAX1	54900	broad.mit.edu	37	1	203743453	203743453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:203743453G>A	uc001haa.2	+	5	1251	c.841G>A	c.(841-843)GAA>AAA	p.E281K	LAX1_uc010pql.1_Missense_Mutation_p.E265K|LAX1_uc001hab.2_Missense_Mutation_p.E205K	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	281	Cytoplasmic (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TGCCATCCAGGAAAGGCAGCT	0.502													34	71					0	0	0.015359	0	0
CNTN2	6900	broad.mit.edu	37	1	205027141	205027141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205027141G>A	uc001hbr.2	+	3	432	c.163G>A	c.(163-165)GAG>AAG	p.E55K	CNTN2_uc001hbq.1_5'UTR|CNTN2_uc009xbi.2_5'Flank|CNTN2_uc001hbs.2_5'Flank	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	55	Ig-like C2-type 1.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GTCCACGGAGGAGCAGGTGTT	0.642													30	63					0	0	0.008361	0	0
RBBP5	5929	broad.mit.edu	37	1	205068906	205068906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205068906G>A	uc001hbu.1	-	9	1071	c.941C>T	c.(940-942)TCC>TTC	p.S314F	RBBP5_uc010prd.1_Missense_Mutation_p.S349F|RBBP5_uc001hbv.1_Missense_Mutation_p.S314F|RBBP5_uc010pre.1_Missense_Mutation_p.S181F	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	314	WD 6.				histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			CACTCCACTGGAAATGGATGC	0.348													60	158					0	0	0.014410	0	0
DSTYK	25778	broad.mit.edu	37	1	205116799	205116799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205116799G>A	uc001hbw.2	-	13	2741	c.2677C>T	c.(2677-2679)CCC>TCC	p.P893S	DSTYK_uc001hbx.2_Missense_Mutation_p.P848S	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	893	Protein kinase.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						CTCTTCAAGGGGTCGCCATCC	0.542													68	139					0	0	0.014410	0	0
ELK4	2005	broad.mit.edu	37	1	205589679	205589679	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205589679C>T	uc001hcy.1	-	3	1745	c.495G>A	c.(493-495)TTG>TTA	p.L165L	ELK4_uc001hcz.2_Silent_p.L165L	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	165						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CAGTCTTTATCAATTTGAAAA	0.423			T	SLC45A3	prostate								39	72					0	0	0.027894	0	0
SLC45A3	85414	broad.mit.edu	37	1	205593017	205593017	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205593017G>A	uc010pro.1	-	4	1139	c.813C>T	c.(811-813)CTC>CTT	p.L271L	ELK4_uc001hcy.1_5'UTR|ELK4_uc001hcz.2_5'UTR|SLC45A3_uc010prn.1_Silent_p.L87L|SLC45A3_uc010prp.1_RNA|ELK4_uc010prq.1_RNA	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	178	Helical; Name=5; (Potential).				transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CCATAGCAATGAGCTGAAAGA	0.294			T	ETV1|ETV5|ELK4|ERG	prostate 								61	91					0	0	0.014410	0	0
SLC26A9	115019	broad.mit.edu	37	1	205892219	205892219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205892219C>T	uc001hdq.2	-	16	1878	c.1764G>A	c.(1762-1764)ATG>ATA	p.M588I	SLC26A9_uc001hdo.2_Missense_Mutation_p.M256I|SLC26A9_uc001hdp.2_Missense_Mutation_p.M588I	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	588	STAS.					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCTTGGTTTTCATGAATAGAG	0.542													80	140					0	0	0.014410	0	0
SLC26A9	115019	broad.mit.edu	37	1	205897173	205897173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:205897173G>A	uc001hdq.2	-	9	1072	c.958C>T	c.(958-960)CCC>TCC	p.P320S	SLC26A9_uc001hdo.2_5'UTR|SLC26A9_uc001hdp.2_Missense_Mutation_p.P320S	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	320						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			ACCGGGGTGGGGAACCTGCCG	0.632													9	53					0	0	0.006214	0	0
CTSE	1510	broad.mit.edu	37	1	206331149	206331149	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:206331149G>A	uc001hdu.2	+	9	1273	c.1155G>A	c.(1153-1155)GGG>GGA	p.G385G	CTSE_uc001hdv.2_Missense_Mutation_p.G338E|CTSE_uc010prs.1_Missense_Mutation_p.G263E	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	390					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TTGACCGTGGGAATAACCGTG	0.562													45	197					0	0	0.011902	0	0
IKBKE	9641	broad.mit.edu	37	1	206648315	206648315	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:206648315C>T	uc001hdz.1	+	5	704	c.336C>T	c.(334-336)TTC>TTT	p.F112F	IKBKE_uc009xbu.1_Silent_p.F112F|IKBKE_uc009xbv.1_Silent_p.F112F|IKBKE_uc001hea.1_Silent_p.F27F	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	112	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					AGGATGAGTTCCTGGTGGTGC	0.632													37	92					0	0	0.013114	0	0
FCAMR	83953	broad.mit.edu	37	1	207131965	207131965	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:207131965G>T	uc001hfa.3	-	8	2130	c.1630C>A	c.(1630-1632)CCC>ACC	p.P544T	FCAMR_uc001hfb.2_3'UTR|FCAMR_uc009xca.1_3'UTR|FCAMR_uc001hfc.2_Missense_Mutation_p.P519T	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	499	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						TCTGCTTGGGGGTTCACTTCC	0.542													26	125					3.73148e-12	3.79416e-12	0.007291	1	0
CD55	1604	broad.mit.edu	37	1	207497975	207497975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:207497975C>T	uc001hfq.3	+	3	652	c.358C>T	c.(358-360)CCA>TCA	p.P120S	CD55_uc001hfp.3_Missense_Mutation_p.P120S|CD55_uc001hfr.3_Missense_Mutation_p.P120S|CD55_uc010psf.1_Intron|CD55_uc009xcf.2_Intron|CD55_uc009xce.2_Missense_Mutation_p.P120S|CD55_uc009xcg.2_5'Flank	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	120	Sushi 2.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	GAATTATTTTCCAGTCGGTAC	0.408													54	140					0	0	0.014410	0	0
CR1	1378	broad.mit.edu	37	1	207758069	207758069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:207758069G>A	uc001hfy.2	+	25	4168	c.4028G>A	c.(4027-4029)GGA>GAA	p.G1343E	CR1_uc009xcl.1_Missense_Mutation_p.G893E|CR1_uc001hfx.2_Missense_Mutation_p.G1793E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1343	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ATTCCCTATGGAAAAGAAATA	0.473													57	115					0	0	0.014410	0	0
CR1	1378	broad.mit.edu	37	1	207758173	207758173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:207758173G>A	uc001hfy.2	+	25	4272	c.4132G>A	c.(4132-4134)GGG>AGG	p.G1378R	CR1_uc009xcl.1_Missense_Mutation_p.G928R|CR1_uc001hfx.2_Missense_Mutation_p.G1828R	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1378	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCATGGGAATGGGGTTTGGAG	0.517													44	173					0	0	0.014410	0	0
CR1	1378	broad.mit.edu	37	1	207789919	207789919	+	Splice_Site	SNP	G	A	A	rs55638044		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:207789919G>A	uc001hfy.2	+	33	5452	c.5312_splice	c.e33-1	p.Q1771_splice	CR1_uc001hfx.2_Splice_Site_p.Q2221_splice	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor						complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TTTCTTTCTAGAAATCTTTTG	0.358													58	117					0	0	0.014410	0	0
HSD11B1	3290	broad.mit.edu	37	1	209878363	209878363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:209878363G>A	uc001hhj.2	+	2	183	c.76G>A	c.(76-78)GAA>AAA	p.E26K	HSD11B1_uc001hhk.2_Missense_Mutation_p.E26K	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	26	Lumenal (Potential).			EE->KK: Inverted topology. Reduced Vmax.|EE->QQ: Reduced Vmax.|EE->KQ: No effect on topology. Reduced Vmax.|E->K: No effect on activity.	glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	TGCAAACGAGGAATTCAGACC	0.463													51	82					0	0	0.014410	0	0
USH2A	7399	broad.mit.edu	37	1	215916657	215916657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:215916657G>A	uc001hku.1	-	59	11797	c.11410C>T	c.(11410-11412)CCT>TCT	p.P3804S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3804	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TACTCCACAGGAATTTCGGGG	0.333										HNSCC(13;0.011)			51	84					0	0	0.014410	0	0
USH2A	7399	broad.mit.edu	37	1	215972452	215972452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:215972452G>A	uc001hku.1	-	50	10142	c.9755C>T	c.(9754-9756)CCA>CTA	p.P3252L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3252	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGTTCATCTGGACAGCATAC	0.403										HNSCC(13;0.011)			17	14					0	0	0.007413	0	0
USH2A	7399	broad.mit.edu	37	1	216107984	216107984	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:216107984G>C	uc001hku.1	-	38	7661	c.7274C>G	c.(7273-7275)CCT>CGT	p.P2425R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2425	Extracellular (Potential).|Fibronectin type-III 10.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATTGTTATAGGATCAGTTAT	0.378										HNSCC(13;0.011)			12	44					0	0	0.013537	0	0
MOSC1	64757	broad.mit.edu	37	1	220964850	220964850	+	Missense_Mutation	SNP	A	G	G	rs149405266		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:220964850A>G	uc001hms.2	+	2	541	c.293A>G	c.(292-294)AAC>AGC	p.N98S	MOSC1_uc001hmt.2_Missense_Mutation_p.N98S	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	98							molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		CTTGTGATCAACCAGGAGGGA	0.517													21	78					0	0	0.016522	0	0
HHIPL2	79802	broad.mit.edu	37	1	222712039	222712039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:222712039C>T	uc001hnh.1	-	5	1586	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	510					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TTTGGGGATTCACAACCACGA	0.428													90	223					0	0	0.014410	0	0
TLR5	7100	broad.mit.edu	37	1	223284112	223284112	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:223284112G>A	uc001hnv.1	-	4	2708	c.2262C>T	c.(2260-2262)ATC>ATT	p.I754I	TLR5_uc001hnw.1_Silent_p.I754I	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	754	Cytoplasmic (Potential).|TIR.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CAAGACAAACGATCTTTCTAC	0.468													44	62					0	0	0.013114	0	0
DNAH14	127602	broad.mit.edu	37	1	225142737	225142737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:225142737G>A	uc001how.2	+	3	369	c.154G>A	c.(154-156)GAA>AAA	p.E52K	DNAH14_uc001hou.3_Missense_Mutation_p.E52K|DNAH14_uc001hot.3_Missense_Mutation_p.E52K|DNAH14_uc001hov.3_Missense_Mutation_p.E52K	NM_001373	NP_001364	Q0VDD8	DYH14_HUMAN	dynein, axonemal, heavy polypeptide 14 isoform	229					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1						AGCAGAAAAGGAAACATTGGA	0.299													47	113					0	0	0.014410	0	0
LBR	3930	broad.mit.edu	37	1	225592349	225592349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:225592349G>A	uc001hoy.2	-	12	1686	c.1543C>T	c.(1543-1545)CCC>TCC	p.P515S	LBR_uc001hoz.2_Missense_Mutation_p.P515S	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	515					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity	p.P515L(1)		ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		GGATCACTGGGATTTTTCCGG	0.279													18	61					0	0	0.006122	0	0
CABC1	56997	broad.mit.edu	37	1	227153028	227153028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:227153028C>T	uc001hqm.1	+	8	3924	c.505C>T	c.(505-507)CCT>TCT	p.P169S	CABC1_uc010pvp.1_Missense_Mutation_p.P132S|CABC1_uc001hqn.1_Missense_Mutation_p.P169S|CABC1_uc009xeq.1_Missense_Mutation_p.P117S|CABC1_uc010pvq.1_Intron|CABC1_uc010pvr.1_5'Flank	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	169					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				GGACCAATCCCCTGTTGGGGG	0.617													15	50					0	0	0.028581	0	0
GUK1	2987	broad.mit.edu	37	1	228334618	228334618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:228334618C>T	uc001hsh.2	+	5	533	c.230C>T	c.(229-231)TCG>TTG	p.S77L	GUK1_uc001hsi.2_Missense_Mutation_p.S98L|GUK1_uc001hsj.2_Missense_Mutation_p.S17L|GUK1_uc010pvv.1_Missense_Mutation_p.S77L|GJC2_uc001hsk.2_5'Flank	NM_000858	NP_000849	Q16774	KGUA_HUMAN	guanylate kinase 1 isoform b	77	Guanylate kinase-like.				nucleobase, nucleoside and nucleotide interconversion|purine nucleotide metabolic process	cytosol	ATP binding|guanylate kinase activity				0		Prostate(94;0.0405)				GCCGAGTTCTCGGGGAACCTG	0.612													44	158					0	0	0.014410	0	0
TRIM11	81559	broad.mit.edu	37	1	228582482	228582482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:228582482G>A	uc001hss.2	-	6	1586	c.1331C>T	c.(1330-1332)CCC>CTC	p.P444L	TRIM11_uc010pvx.1_Missense_Mutation_p.P443L	NM_145214	NP_660215	Q96F44	TRI11_HUMAN	tripartite motif-containing 11	444	B30.2/SPRY.				response to virus	cytoplasm|nucleus	protein binding|zinc ion binding			lung(3)|ovary(1)	4		Prostate(94;0.0724)				GCTGGACAGGGGTGAGAAGAG	0.637													32	66					0	0	0.013726	0	0
RHOU	58480	broad.mit.edu	37	1	228871726	228871726	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:228871726C>T	uc001htf.2	+	1	858	c.237C>T	c.(235-237)ATC>ATT	p.I79I		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	79					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				CCGAGTACATCCCTACTGCCT	0.488													28	48					0	0	0.010818	0	0
ACTA1	58	broad.mit.edu	37	1	229568051	229568051	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:229568051G>A	uc001htm.2	-	4	687	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	194					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	GCTCAGTGAGGATCTTCATCA	0.478													24	66					0	0	0.021523	0	0
ABCB10	23456	broad.mit.edu	37	1	229685161	229685161	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:229685161T>A	uc001htp.3	-	2	581	c.538A>T	c.(538-540)ATG>TTG	p.M180L		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	180	Mitochondrial intermembrane (Potential).|ABC transmembrane type-1.|Helical; (Potential).					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				ACACTGGACATCGTGAGAAAT	0.522													28	30					0	0	0.006320	0	0
MIR1182	100302132	broad.mit.edu	37	1	231155615	231155615	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:231155615G>A	hsa-mir-1182|MI0006275	-			c.56G>A			FAM89A_uc001hui.2_Silent_p.S183S|FAM89A_uc009xfm.2_Silent_p.S194S																	0						CCCTCTAGATGGACTCCAGAA	0.577													22	35					0	0	0.014323	0	0
TRIM67	440730	broad.mit.edu	37	1	231349710	231349710	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:231349710A>G	uc009xfn.1	+	9	2315	c.2273A>G	c.(2272-2274)AAC>AGC	p.N758S		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	758	B30.2/SPRY.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				CTCAGCCTCAACCGCAACGTG	0.627													13	54					0	0	0.020292	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232561465	232561465	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:232561465G>A	uc001hvg.2	-	16	4658	c.4500C>T	c.(4498-4500)TCC>TCT	p.S1500S	SIPA1L2_uc001hvf.2_Silent_p.S574S	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1500					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				AACTGCCAAAGGAGGACCCCC	0.597													18	78					0	0	0.007413	0	0
PCNXL2	80003	broad.mit.edu	37	1	233160912	233160912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:233160912G>A	uc001hvl.2	-	26	4820	c.4585C>T	c.(4585-4587)CTC>TTC	p.L1529F	PCNXL2_uc001hvk.1_Missense_Mutation_p.L181F|PCNXL2_uc001hvm.1_Intron	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1529						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TAGCGGATGAGGATCCTTCGG	0.532													27	117					0	0	0.007291	0	0
SLC35F3	148641	broad.mit.edu	37	1	234041368	234041368	+	Silent	SNP	G	A	A	rs137942881		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:234041368G>A	uc001hvy.1	+	2	292	c.147G>A	c.(145-147)GCG>GCA	p.A49A		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGGACGAGGCGATTAAGGAGG	0.642													56	99					0	0	0.014410	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367362	234367362	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:234367362G>A	uc001hwa.1	+	2	504	c.276G>A	c.(274-276)AGG>AGA	p.R92R	SLC35F3_uc001hvy.1_Silent_p.R161R	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	92					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGACCTTCAGGAAGTTCGACG	0.602													92	299					0	0	0.014410	0	0
ARID4B	51742	broad.mit.edu	37	1	235392677	235392677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:235392677G>A	uc001hwq.2	-	11	1264	c.766C>T	c.(766-768)CAC>TAC	p.H256Y	ARID4B_uc001hwr.2_Missense_Mutation_p.H256Y|ARID4B_uc001hws.3_Missense_Mutation_p.H256Y|ARID4B_uc001hwu.1_Missense_Mutation_p.H256Y|ARID4B_uc001hwt.3_5'UTR	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			CTACTTTTGTGAAATTCAAGT	0.284													30	52					0	0	0.017118	0	0
LYST	1130	broad.mit.edu	37	1	235866213	235866213	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:235866213A>G	uc001hxj.2	-	45	10383	c.10208T>C	c.(10207-10209)ATG>ACG	p.M3403T	LYST_uc001hxi.2_Missense_Mutation_p.M627T	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3403	BEACH.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GGTTTTTATCATGGTTTCTAG	0.478									Chediak-Higashi_syndrome				65	231					0	0	0.014410	0	0
NID1	4811	broad.mit.edu	37	1	236212240	236212240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:236212240G>A	uc001hxo.2	-	2	377	c.275C>T	c.(274-276)TCC>TTC	p.S92F	NID1_uc009xgd.2_Missense_Mutation_p.S92F	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	92					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CCCGGGATGGGATTCTTTGGC	0.532													40	127					0	0	0.011902	0	0
EDARADD	128178	broad.mit.edu	37	1	236572530	236572530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:236572530G>A	uc001hxu.1	+	2	141	c.76G>A	c.(76-78)GAA>AAA	p.E26K	EDARADD_uc001hxv.1_Missense_Mutation_p.E16K	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	26					cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TATGGTAAAGGAACCAGTGGA	0.323													41	97					0	0	0.014410	0	0
EDARADD	128178	broad.mit.edu	37	1	236645580	236645580	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:236645580C>T	uc001hxu.1	+	6	344	c.279C>T	c.(277-279)GAC>GAT	p.D93D	EDARADD_uc001hxv.1_Silent_p.D83D	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	93					cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TCAGCAAGGACAACTCCTGCA	0.448													16	131					0	0	0.006122	0	0
RYR2	6262	broad.mit.edu	37	1	237777612	237777612	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:237777612C>T	uc001hyl.1	+	37	5304	c.5184C>T	c.(5182-5184)CCC>CCT	p.P1728P		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1728	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACATTGTCCCCATGACGGAGG	0.557													16	31					0	0	0.028581	0	0
RYR2	6262	broad.mit.edu	37	1	237780760	237780760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:237780760G>A	uc001hyl.1	+	38	6010	c.5890G>A	c.(5890-5892)GAA>AAA	p.E1964K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1964	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAAGACAAAGGAATTTAGATC	0.398													33	66					0	0	0.017118	0	0
RYR2	6262	broad.mit.edu	37	1	237791158	237791158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:237791158C>T	uc001hyl.1	+	41	6338	c.6218C>T	c.(6217-6219)TCT>TTT	p.S2073F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2073	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCTCAGGAGTCTGTCATTGAA	0.493													11	23					0	0	0.008291	0	0
ZP4	57829	broad.mit.edu	37	1	238048779	238048779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:238048779G>A	uc001hym.2	-	8	1072	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	358	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			CCCAGGTAGGGGTCTGTTCTG	0.537													30	59					0	0	0.008361	0	0
CHRM3	1131	broad.mit.edu	37	1	240071338	240071338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:240071338C>T	uc001hyp.2	+	5	1366	c.587C>T	c.(586-588)TCC>TTC	p.S196F		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	196	Helical; Name=4; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TGGGTCATCTCCTTTGTCCTT	0.517													91	207					0	0	0.014410	0	0
FMN2	56776	broad.mit.edu	37	1	240256893	240256893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:240256893G>A	uc010pyd.1	+	1	1709	c.1484G>A	c.(1483-1485)CGG>CAG	p.R495Q	FMN2_uc010pye.1_Missense_Mutation_p.R495Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	495					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CGCACGCCCCGGGTGGGAGGC	0.781													11	12					0	0	0.010729	0	0
GREM2	64388	broad.mit.edu	37	1	240656759	240656759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:240656759G>A	uc001hys.2	-	2	297	c.17C>T	c.(16-18)TCC>TTC	p.S6F		NM_022469	NP_071914	Q9H772	GREM2_HUMAN	gremlin 2 precursor	6					BMP signaling pathway	extracellular space	cytokine activity				0		all_cancers(173;0.0196)	OV - Ovarian serous cystadenocarcinoma(106;0.0123)			CAAGGACAGGGAAAGCTTCCA	0.547													15	16					0	0	0.020292	0	0
RGS7	6000	broad.mit.edu	37	1	241094032	241094032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:241094032C>T	uc001hyv.2	-	6	700	c.370G>A	c.(370-372)GAA>AAA	p.E124K	RGS7_uc010pyh.1_Missense_Mutation_p.E98K|RGS7_uc010pyj.1_Missense_Mutation_p.E40K|RGS7_uc001hyu.2_Missense_Mutation_p.E124K|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.E124K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	124					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTGTGTTTTCCGGCTCCCAA	0.383													136	248					0	0	0.014410	0	0
WDR64	128025	broad.mit.edu	37	1	241886654	241886654	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:241886654G>A	uc001hze.1	+	9	1287	c.1080G>A	c.(1078-1080)GGG>GGA	p.G360G	WDR64_uc001hzf.1_Silent_p.G80G			B1ANS9	WDR64_HUMAN	RecName: Full=WD repeat-containing protein 64;	360	WD 3.									skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			AGCCAGTAGGGAAACTTGTAG	0.448													24	55					0	0	0.021523	0	0
ZNF695	57116	broad.mit.edu	37	1	247150781	247150781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:247150781G>A	uc009xgu.2	-	4	1181	c.1036C>T	c.(1036-1038)CAT>TAT	p.H346Y	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	346	C2H2-type 7.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TCTCCAGTATGAATTCTTCTA	0.383													21	41					0	0	0.008871	0	0
VN1R5	317705	broad.mit.edu	37	1	247419942	247419942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:247419942C>T	uc010pyu.1	+	2	569	c.569C>T	c.(568-570)CCA>CTA	p.P190L		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	190	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CGGCTACCCCCAGTGAAACGG	0.458													159	261					0	0	0.014410	0	0
NLRP3	114548	broad.mit.edu	37	1	247588768	247588768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:247588768C>T	uc001icr.2	+	5	2161	c.2023C>T	c.(2023-2025)CGG>TGG	p.R675W	NLRP3_uc001ics.2_Missense_Mutation_p.R675W|NLRP3_uc001icu.2_Missense_Mutation_p.R675W|NLRP3_uc001icw.2_Missense_Mutation_p.R675W|NLRP3_uc001icv.2_Missense_Mutation_p.R675W|NLRP3_uc010pyw.1_Missense_Mutation_p.R673W|NLRP3_uc001ict.1_Missense_Mutation_p.R673W	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	675					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GAACTGTCATCGGGTGGAGTC	0.502													18	85					0	0	0.007413	0	0
OR1C1	26188	broad.mit.edu	37	1	247921140	247921140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:247921140G>A	uc010pza.1	-	1	569	c.569C>T	c.(568-570)TCT>TTT	p.S190F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGAGACGTCAGAGCAAGAGAG	0.458													5	30					0	0	0.014758	0	0
OR11L1	391189	broad.mit.edu	37	1	248004720	248004720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248004720G>A	uc001idn.1	-	1	479	c.479C>T	c.(478-480)TCC>TTC	p.S160F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AATCATCAGGGAAGGCAGAAA	0.562													40	129					0	0	0.009718	0	0
OR2W3	343171	broad.mit.edu	37	1	248059118	248059118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248059118C>T	uc001idp.1	+	3	499	c.230C>T	c.(229-231)TCC>TTC	p.S77F	OR2W3_uc010pzb.1_Missense_Mutation_p.S77F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACCACCAGCTCCATCCCCCAG	0.577													116	177					0	0	0.014410	0	0
OR2T8	343172	broad.mit.edu	37	1	248084543	248084543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248084543C>T	uc010pzc.1	+	1	224	c.224C>T	c.(223-225)ACT>ATT	p.T75I		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GTTTCCACCACTGTGCCCAAA	0.577													8	289					0	0	0.010729	0	0
OR2AK2	391191	broad.mit.edu	37	1	248128657	248128657	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248128657C>T	uc010pzd.1	+	1	24	c.24C>T	c.(22-24)TCC>TCT	p.S8S	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			atgtcatctCCTTTGATATTT	0.184													31	65					0	0	0.009535	0	0
OR2L2	26246	broad.mit.edu	37	1	248201816	248201816	+	Missense_Mutation	SNP	G	A	A	rs142994715		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248201816G>A	uc001idw.2	+	1	343	c.247G>A	c.(247-249)GAT>AAT	p.D83N	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.D83N(1)		ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GAtggtttatgattttctgta	0.308													94	286					0	0	0.014410	0	0
OR2L2	26246	broad.mit.edu	37	1	248202081	248202081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248202081G>A	uc001idw.2	+	1	608	c.512G>A	c.(511-513)AGA>AAA	p.R171K	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TGCAAGTCCAGAGCCATCAAT	0.438													77	233					0	0	0.014410	0	0
OR2M2	391194	broad.mit.edu	37	1	248344012	248344012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248344012C>T	uc010pzf.1	+	1	725	c.725C>T	c.(724-726)TCC>TTC	p.S242F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACGACCTGTTCCTCTCACCTC	0.493													61	176					0	0	0.014410	0	0
OR2M3	127062	broad.mit.edu	37	1	248366886	248366886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248366886G>A	uc010pzg.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGGTCTCGGGAAATAGCCCA	0.418													61	161					0	0	0.014410	0	0
OR2M4	26245	broad.mit.edu	37	1	248402872	248402872	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248402872C>T	uc010pzh.1	+	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TTTCAGTTATCATACTTTCCT	0.473													33	63					0	0	0.010818	0	0
OR2T12	127064	broad.mit.edu	37	1	248458657	248458657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248458657G>A	uc010pzj.1	-	1	224	c.224C>T	c.(223-225)ACT>ATT	p.T75I		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TTTGGGCACAGTGGTGGAAAC	0.562													6	95					0	0	0.012319	0	0
OR2T6	254879	broad.mit.edu	37	1	248551041	248551041	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248551041C>T	uc001iei.1	+	1	132	c.132C>T	c.(130-132)GTC>GTT	p.V44V		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTAATGGGGTCATGATCTTCC	0.468													22	81					0	0	0.010504	0	0
OR2T3	343173	broad.mit.edu	37	1	248637182	248637182	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248637182G>A	uc001iel.1	+	1	531	c.531G>A	c.(529-531)AGG>AGA	p.R177R		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCAGTCTAGGAAAATCCTGA	0.527													32	97					0	0	0.013726	0	0
OR2T10	127069	broad.mit.edu	37	1	248756719	248756719	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr1:248756719G>A	uc010pzn.1	-	1	351	c.351C>T	c.(349-351)GCC>GCT	p.A117A		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATAGGCCATGGCGGCTAGAA	0.562													71	95					0	0	0.014410	0	0
C10orf18	54906	broad.mit.edu	37	10	5772729	5772729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:5772729C>T	uc001iij.2	+	11	1392	c.767C>T	c.(766-768)TCT>TTT	p.S256F	C10orf18_uc001iik.2_5'Flank	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	256										ovary(1)|central_nervous_system(1)	2						CCTTCAGAGTCTTTAACTCAG	0.443													53	89					0	0	0.014410	0	0
GDI2	2665	broad.mit.edu	37	10	5836859	5836859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:5836859G>A	uc001iil.3	-	4	668	c.377C>T	c.(376-378)GCC>GTC	p.A126V	GDI2_uc001iim.3_Intron|GDI2_uc009xid.2_Missense_Mutation_p.A130V	NM_001494	NP_001485	P50395	GDIB_HUMAN	GDP dissociation inhibitor 2 isoform 1	126					protein transport|small GTPase mediated signal transduction	cell surface|cytosol|membrane	protein binding|Rab GDP-dissociation inhibitor activity				0						AGATGCCAGGGCTTCTGCTTC	0.294													44	61					0	0	0.014410	0	0
ITIH2	3698	broad.mit.edu	37	10	7745461	7745461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:7745461C>T	uc001ijs.2	+	1	226	c.64C>T	c.(64-66)CCC>TCC	p.P22S		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	22					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CTTCGAAATCCCCATAAATGG	0.408													21	44					0	0	0.018920	0	0
ITIH2	3698	broad.mit.edu	37	10	7786917	7786917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:7786917G>A	uc001ijs.2	+	19	2734	c.2572G>A	c.(2572-2574)GGA>AGA	p.G858R		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	858					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TAAAGCCCACGGACTAATAGG	0.448													35	54					0	0	0.015359	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256413	15256413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:15256413C>T	uc001iob.2	-	8	1181	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	392	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CTCATCAGTTCCTTCGTGCCG	0.602													55	76					0	0	0.014410	0	0
KIAA1217	56243	broad.mit.edu	37	10	24508789	24508789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:24508789C>T	uc001iru.3	+	2	708	c.305C>T	c.(304-306)CCC>CTC	p.P102L	KIAA1217_uc001irs.2_Missense_Mutation_p.P22L|KIAA1217_uc001irt.3_Missense_Mutation_p.P102L|KIAA1217_uc010qcy.1_Missense_Mutation_p.P102L|KIAA1217_uc010qcz.1_Missense_Mutation_p.P102L	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	102					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CAGAAGTACCCCCACCACGCC	0.502													29	48					0	0	0.007291	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669879	24669879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:24669879G>A	uc001iru.3	+	3	839	c.436G>A	c.(436-438)GAT>AAT	p.D146N	KIAA1217_uc001irs.2_Missense_Mutation_p.D66N|KIAA1217_uc001irt.3_Missense_Mutation_p.D146N|KIAA1217_uc010qcy.1_Missense_Mutation_p.D146N|KIAA1217_uc010qcz.1_Missense_Mutation_p.D146N|KIAA1217_uc001irv.1_5'UTR|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	146					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GACGTCCGCTGATTCTTTGGA	0.547													35	51					0	0	0.015359	0	0
KIAA1217	56243	broad.mit.edu	37	10	24835165	24835165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:24835165C>T	uc001iru.3	+	21	6147	c.5744C>T	c.(5743-5745)ACC>ATC	p.T1915I	KIAA1217_uc001irs.2_Missense_Mutation_p.T1236I|KIAA1217_uc001irt.3_Missense_Mutation_p.T1281I|KIAA1217_uc010qcy.1_Missense_Mutation_p.T1346I|KIAA1217_uc010qcz.1_Missense_Mutation_p.T1321I|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1915					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGCACCAGGACCATCCATACT	0.368													25	50					0	0	0.024334	0	0
MYO3A	53904	broad.mit.edu	37	10	26414347	26414347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:26414347C>T	uc001isn.2	+	19	2284	c.1924C>T	c.(1924-1926)CGG>TGG	p.R642W	MYO3A_uc009xko.1_Missense_Mutation_p.R642W|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	642	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCTTTGCATTCGGGCAGATGA	0.418													19	24					0	0	0.006122	0	0
MYO3A	53904	broad.mit.edu	37	10	26462592	26462592	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:26462592G>A	uc001isn.2	+	30	3759	c.3399G>A	c.(3397-3399)AGG>AGA	p.R1133R	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1133					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TTTTACACAGGGAATCTTTCG	0.338													13	14					0	0	0.020292	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687295	27687295	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:27687295G>A	uc001itu.2	-	4	2350	c.2232C>T	c.(2230-2232)ATC>ATT	p.I744I		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	744					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGGAAGAAATGATTTCATTTG	0.308													11	19					0	0	0.013537	0	0
MKX	283078	broad.mit.edu	37	10	28023670	28023670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:28023670G>A	uc001ity.3	-	5	778	c.553C>T	c.(553-555)CCA>TCA	p.P185S	MKX_uc001itx.3_Missense_Mutation_p.P185S	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	185					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGGTGAACTGGGGTATTATAG	0.493													34	43					0	0	0.015359	0	0
ZNF438	220929	broad.mit.edu	37	10	31138079	31138079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:31138079G>A	uc010qdz.1	-	7	1690	c.1255C>T	c.(1255-1257)CCC>TCC	p.P419S	ZNF438_uc001ivn.2_Missense_Mutation_p.P370S|ZNF438_uc010qdy.1_Missense_Mutation_p.P409S|ZNF438_uc001ivo.3_5'UTR|ZNF438_uc009xlg.2_Missense_Mutation_p.P419S|ZNF438_uc001ivp.3_Missense_Mutation_p.P409S|ZNF438_uc010qea.1_Missense_Mutation_p.P419S|ZNF438_uc010qeb.1_Missense_Mutation_p.P419S|ZNF438_uc010qec.1_5'UTR	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	419					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				AATTCTTGGGGATCATTTTTT	0.403													25	56					0	0	0.018920	0	0
ZEB1	6935	broad.mit.edu	37	10	31815672	31815672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:31815672G>A	uc001ivs.3	+	9	2918	c.2855G>A	c.(2854-2856)CGA>CAA	p.R952Q	ZEB1_uc001ivr.3_Missense_Mutation_p.R734Q|ZEB1_uc010qee.1_Missense_Mutation_p.R734Q|ZEB1_uc010qef.1_Missense_Mutation_p.R734Q|ZEB1_uc001ivt.3_Missense_Mutation_p.R734Q|ZEB1_uc001ivu.3_Missense_Mutation_p.R953Q|ZEB1_uc001ivv.3_Missense_Mutation_p.R932Q|ZEB1_uc010qeh.1_Missense_Mutation_p.R885Q|ZEB1_uc009xlp.2_Missense_Mutation_p.R936Q	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	952	C2H2-type 6.				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GAACACATGCGATTACATTCT	0.368													16	24					0	0	0.004990	0	0
C10orf68	79741	broad.mit.edu	37	10	33123776	33123776	+	Missense_Mutation	SNP	G	A	A	rs143370393	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:33123776G>A	uc001iwn.3	+	14	1588	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E	C10orf68_uc001iwl.1_Missense_Mutation_p.G331E|C10orf68_uc001iwm.1_Missense_Mutation_p.G348E|C10orf68_uc010qei.1_Missense_Mutation_p.G320E|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	372										skin(2)|ovary(1)	3						GGTGTTAATGGAAAAGATATA	0.323													4	5					0	0	0.009096	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089784	43089784	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:43089784T>C	uc001jaf.1	-	5	729	c.614A>G	c.(613-615)AAC>AGC	p.N205S	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.N93S|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	205						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTGCAAAGTGTTCTCACGATG	0.363													4	86					0	0	0.009096	0	0
RET	5979	broad.mit.edu	37	10	43604645	43604645	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:43604645C>T	uc001jal.2	+	6	1420	c.1230C>T	c.(1228-1230)CTC>CTT	p.L410L	RET_uc001jak.1_Silent_p.L410L|RET_uc010qez.1_Silent_p.L156L	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	410	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CCTACTCCCTCTCCGTGAGCA	0.622		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				28	38					0	0	0.007291	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659373	43659373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:43659373G>A	uc001jan.2	+	5	1375	c.1040G>A	c.(1039-1041)CGA>CAA	p.R347Q		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	347	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						AATCGTGGACGAGGACTAAAT	0.413													29	34					0	0	0.007291	0	0
ZNF239	8187	broad.mit.edu	37	10	44052351	44052351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:44052351G>A	uc001jaw.3	-	2	1830	c.1177C>T	c.(1177-1179)CAT>TAT	p.H393Y	ZNF239_uc001jax.3_Missense_Mutation_p.H393Y|ZNF239_uc009xmj.2_Missense_Mutation_p.H393Y|ZNF239_uc009xmk.2_Missense_Mutation_p.H393Y	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	393	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						ACTCTGAGATGGATGCGAAGA	0.517													28	37					0	0	0.012213	0	0
ANUBL1	93550	broad.mit.edu	37	10	46121896	46121896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:46121896G>A	uc001jcp.3	-	7	1617	c.1375C>T	c.(1375-1377)CTT>TTT	p.L459F	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.L459F|ANUBL1_uc009xmu.2_Missense_Mutation_p.L385F|ANUBL1_uc001jcn.3_Missense_Mutation_p.L385F|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	459							zinc ion binding				0						CGGTAGTTAAGAACTGAAGTC	0.458													107	154					0	0	0.014410	0	0
SYT15	83849	broad.mit.edu	37	10	46967611	46967611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:46967611C>T	uc001jea.2	-	4	619	c.466G>A	c.(466-468)GAA>AAA	p.E156K	SYT15_uc001jdz.2_Missense_Mutation_p.E156K|SYT15_uc001jeb.2_Missense_Mutation_p.E34K|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	156	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						TGCTCATATTCCACCGAGAAC	0.622													43	128					0	0	0.007835	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999403	46999403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:46999403G>A	uc001jec.2	+	3	658	c.523G>A	c.(523-525)GAC>AAC	p.D175N	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	175											0						CCTGGAAAGGGACCTGGCTCC	0.637													16	52					0	0	0.008871	0	0
PPYR1	5540	broad.mit.edu	37	10	47087410	47087410	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:47087410C>T	uc001jee.2	+	3	1046	c.627C>T	c.(625-627)CAC>CAT	p.H209H	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.H209H	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	209	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CACTGGCTCACCACCGCACCA	0.577													41	145					0	0	0.013114	0	0
GDF2	2658	broad.mit.edu	37	10	48413836	48413836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:48413836C>T	uc001jfa.1	-	2	1195	c.1032G>A	c.(1030-1032)TGG>TGA	p.W344*		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	344					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GTGCAATGATCCAGCTGTCCC	0.587													40	79					0	0	0.008740	0	0
GDF2	2658	broad.mit.edu	37	10	48414135	48414135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:48414135G>A	uc001jfa.1	-	2	896	c.733C>T	c.(733-735)CCC>TCC	p.P245S		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	245					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GAACCTGGGGGGACACTGATG	0.572													38	54					0	0	0.019004	0	0
GDF10	2662	broad.mit.edu	37	10	48428863	48428863	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:48428863C>T	uc001jfb.2	-	2	1479	c.1023G>A	c.(1021-1023)AGG>AGA	p.R341R	GDF10_uc009xnp.2_Silent_p.R340R|GDF10_uc009xnq.1_Silent_p.R341R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	341					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GGCCCTTCTTCCTGCGGTCTT	0.667													24	33					0	0	0.014323	0	0
SGMS1	259230	broad.mit.edu	37	10	52067844	52067844	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:52067844G>A	uc001jje.2	-	10	1914	c.960C>T	c.(958-960)TTC>TTT	p.F320F	SGMS1_uc010qhk.1_Silent_p.F151F	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	326	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						AGAGAATACAGAAGATTCCAA	0.488													25	41					0	0	0.024334	0	0
SGMS1	259230	broad.mit.edu	37	10	52103296	52103296	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:52103296G>A	uc001jje.2	-	7	1533	c.579C>T	c.(577-579)ATC>ATT	p.I193I	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Silent_p.I193I|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	199	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GTCCTACAAGGATCATGCCAT	0.408													21	40					0	0	0.014323	0	0
A1CF	29974	broad.mit.edu	37	10	52573735	52573735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:52573735C>T	uc001jjj.2	-	10	1417	c.1229G>A	c.(1228-1230)GGA>GAA	p.G410E	A1CF_uc010qhn.1_Missense_Mutation_p.G410E|A1CF_uc001jji.2_Missense_Mutation_p.G402E|A1CF_uc001jjh.2_Missense_Mutation_p.G410E|A1CF_uc010qho.1_Missense_Mutation_p.G418E|A1CF_uc009xov.2_Missense_Mutation_p.G402E	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	410					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GACCTGGTATCCTCGACCCAG	0.493													25	35					0	0	0.018920	0	0
A1CF	29974	broad.mit.edu	37	10	52619604	52619604	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:52619604G>A	uc001jjj.2	-	3	285	c.97C>T	c.(97-99)CAG>TAG	p.Q33*	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Nonsense_Mutation_p.Q33*|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Nonsense_Mutation_p.Q33*|A1CF_uc001jjk.1_Nonsense_Mutation_p.Q33*	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	33					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTTCCTACCTGGACCAAGCTA	0.498													16	21					0	0	0.004990	0	0
PCDH15	65217	broad.mit.edu	37	10	55973765	55973765	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:55973765C>T	uc001jju.1	-	10	1424	c.1029G>A	c.(1027-1029)AGG>AGA	p.R343R	PCDH15_uc010qhq.1_Silent_p.R348R|PCDH15_uc010qhr.1_Silent_p.R343R|PCDH15_uc010qhs.1_Silent_p.R348R|PCDH15_uc010qht.1_Silent_p.R343R|PCDH15_uc010qhu.1_Silent_p.R343R|PCDH15_uc001jjv.1_Silent_p.R321R|PCDH15_uc010qhv.1_Silent_p.R343R|PCDH15_uc010qhw.1_Silent_p.R306R|PCDH15_uc010qhx.1_Silent_p.R343R|PCDH15_uc010qhy.1_Silent_p.R348R|PCDH15_uc010qhz.1_Silent_p.R343R|PCDH15_uc010qia.1_Silent_p.R321R|PCDH15_uc010qib.1_Silent_p.R321R|PCDH15_uc001jjw.2_Silent_p.R343R	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	343	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTTCTGCTGTCCTAGGATGCA	0.363										HNSCC(58;0.16)			26	58					0	0	0.010818	0	0
FAM13C	220965	broad.mit.edu	37	10	61023888	61023888	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:61023888C>T	uc001jkn.2	-	10	1115	c.981G>A	c.(979-981)CTG>CTA	p.L327L	FAM13C_uc001jko.2_Intron|FAM13C_uc010qid.1_Silent_p.L244L|FAM13C_uc010qie.1_Silent_p.L244L|FAM13C_uc010qif.1_Silent_p.L349L|FAM13C_uc001jkp.2_Silent_p.L244L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	327										ovary(2)	2						TCATCCATTTCAGGACTTCAG	0.289													32	45					0	0	0.013726	0	0
ANK3	288	broad.mit.edu	37	10	61831431	61831431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:61831431G>A	uc001jky.2	-	37	9400	c.9208C>T	c.(9208-9210)CCC>TCC	p.P3070S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3070					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCATCAATGGGACTGTGGTCG	0.463													46	70					0	0	0.014410	0	0
ANK3	288	broad.mit.edu	37	10	61835056	61835056	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:61835056C>T	uc001jky.2	-	37	5775	c.5583G>A	c.(5581-5583)ACG>ACA	p.T1861T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1861	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GATGTGTCTCCGTAGTCAATG	0.423													34	57					0	0	0.017118	0	0
C10orf107	219621	broad.mit.edu	37	10	63519881	63519881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:63519881C>T	uc010qik.1	+	5	658	c.353C>T	c.(352-354)TCA>TTA	p.S118L		NM_173554	NP_775825	Q8IVU9	CJ107_HUMAN	hypothetical protein LOC219621	118											0	Prostate(12;0.016)					GAAGGAATCTCATTTGATATT	0.393													5	16					0	0	0.001984	0	0
CDH23	64072	broad.mit.edu	37	10	73485149	73485149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:73485149C>T	uc001jrx.3	+	29	3828	c.3451C>T	c.(3451-3453)CGG>TGG	p.R1151W	CDH23_uc001jrz.2_Missense_Mutation_p.R767W|C10orf105_uc001jsb.1_Intron|CDH23_uc001jsc.1_Intron	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1151	Cadherin 11.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CAACAACTTCCGGATCCATGT	0.637													30	54					0	0	0.013726	0	0
CHCHD1	118487	broad.mit.edu	37	10	75541846	75541846	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:75541846A>G	uc001jvc.3	+	1	39	c.13A>G	c.(13-15)AGC>GGC	p.S5G	CHCHD1_uc001jvb.2_Missense_Mutation_p.S5G	NM_203298	NP_976043	Q96BP2	CHCH1_HUMAN	coiled-coil-helix-coiled-coil-helix domain	5						nucleus					0	Prostate(51;0.0112)					GGCGACACCCAGCCTGCGGGG	0.677													51	90					0	0	0.014410	0	0
PLAU	5328	broad.mit.edu	37	10	75673310	75673310	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:75673310C>T	uc001jwa.2	+	7	620	c.474C>T	c.(472-474)TCC>TCT	p.S158S	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Silent_p.S141S|PLAU_uc010qkx.1_Silent_p.S72S|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Silent_p.S158S|PLAU_uc009xrq.1_Silent_p.S122S	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	158	Connecting peptide.			S->E: Abolishes phosphorylation, proadhesive function and ability to induce chemotactic response; when associated with E-323.	blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	AAAAGCCCTCCTCTCCTCCAG	0.527													216	315					0	0	0.014410	0	0
MAT1A	4143	broad.mit.edu	37	10	82034872	82034872	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:82034872C>T	uc001kbw.2	-	7	1107	c.852G>A	c.(850-852)GGG>GGA	p.G284G		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	284					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TGTAGTCCTTCCCAGAGAAGG	0.607													14	11					0	0	0.028581	0	0
GRID1	2894	broad.mit.edu	37	10	87966247	87966247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:87966247G>A	uc001kdl.1	-	3	495	c.394C>T	c.(394-396)CCC>TCC	p.P132S	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	132	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCGGGGCTGGGGTTCAGGTGG	0.632										Multiple Myeloma(13;0.14)			38	56					0	0	0.010771	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143253	91143253	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:91143253G>A	uc001kgh.2	+	2	263	c.183G>A	c.(181-183)GTG>GTA	p.V61V	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	61	TPR 1.|Potential.						binding				0						TAGCCTATGTGAAACACCTGA	0.428													49	58					0	0	0.014410	0	0
KIF20B	9585	broad.mit.edu	37	10	91518632	91518632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:91518632C>T	uc001kgs.1	+	27	4745	c.4673C>T	c.(4672-4674)TCT>TTT	p.S1558F	KIF20B_uc001kgr.1_Missense_Mutation_p.S1518F|KIF20B_uc001kgt.1_Missense_Mutation_p.S769F|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1558					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TCAGAGACTTCTAAAATAGTC	0.289													4	14					0	0	0.014758	0	0
MARCH5	54708	broad.mit.edu	37	10	94109449	94109449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:94109449G>A	uc001khx.1	+	5	907	c.575G>A	c.(574-576)CGA>CAA	p.R192Q	MARCH5_uc010qno.1_Missense_Mutation_p.R88Q	NM_017824	NP_060294	Q9NX47	MARH5_HUMAN	membrane-associated ring finger (C3HC4) 5	192					cell aging|protein autoubiquitination|protein localization in mitochondrion|protein polyubiquitination|regulation of mitochondrial fission	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	GTPase binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1						CCTGTTCCTCGAATTCCAGCT	0.413													154	202					0	0	0.014410	0	0
MYOF	26509	broad.mit.edu	37	10	95103648	95103648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:95103648C>T	uc001kin.2	-	38	4414	c.4291G>A	c.(4291-4293)GAA>AAA	p.E1431K	MYOF_uc001kio.2_Missense_Mutation_p.E1418K|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1431	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TCTTCCATTTCGATAACGATG	0.428													45	70					0	0	0.014410	0	0
PLCE1	51196	broad.mit.edu	37	10	95791276	95791276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:95791276G>A	uc001kjk.2	+	2	1107	c.473G>A	c.(472-474)AGA>AAA	p.R158K	PLCE1_uc010qnx.1_Missense_Mutation_p.R158K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	158					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GAACTAGACAGACCTTCCATG	0.433													22	41					0	0	0.018920	0	0
CYP2C9	1559	broad.mit.edu	37	10	96702020	96702020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:96702020G>A	uc001kka.3	+	3	428	c.403G>A	c.(403-405)GGG>AGG	p.G135R	CYP2C9_uc009xut.2_Missense_Mutation_p.G135R|CYP2C9_uc001kjz.2_Missense_Mutation_p.G135R	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	135					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCGGAATTTTGGGATGGGGAA	0.502													45	48					0	0	0.014410	0	0
ENTPD1	953	broad.mit.edu	37	10	97625967	97625967	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:97625967T>C	uc001klh.3	+	10	1684	c.1360T>C	c.(1360-1362)TAC>CAC	p.Y454H	ENTPD1_uc001kli.3_Missense_Mutation_p.Y461H|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.Y466H|ENTPD1_uc010qok.1_Missense_Mutation_p.Y346H|ENTPD1_uc010qol.1_Missense_Mutation_p.Y346H|ENTPD1_uc010qom.1_Missense_Mutation_p.Y413H|ENTPD1_uc010qon.1_Missense_Mutation_p.Y316H|ENTPD1_uc009xva.2_Missense_Mutation_p.Y316H|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	454	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		GACTTTGGGCTACATGCTGAA	0.522													16	29					0	0	0.007413	0	0
C10orf28	27291	broad.mit.edu	37	10	99995226	99995226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:99995226C>T	uc001kow.3	+	7	2372	c.2077C>T	c.(2077-2079)CCC>TCC	p.P693S	C10orf28_uc001kox.3_Missense_Mutation_p.P707S|C10orf28_uc001koy.3_Missense_Mutation_p.P693S|C10orf28_uc009xvx.2_Missense_Mutation_p.P693S|C10orf28_uc009xvy.2_Missense_Mutation_p.P99S|C10orf28_uc001koz.3_RNA	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	693							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		GAAGATTCGTCCCTTGTCACA	0.443													15	18					0	0	0.007413	0	0
CPN1	1369	broad.mit.edu	37	10	101829527	101829527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:101829527C>T	uc001kql.2	-	3	780	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	174	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CCGTACTTCTCGTTATAGTAG	0.483													74	75					0	0	0.014410	0	0
C10orf2	56652	broad.mit.edu	37	10	102749036	102749036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:102749036C>T	uc001ksf.2	+	1	1744	c.1069C>T	c.(1069-1071)CGT>TGT	p.R357C	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.R357C|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	357			R -> P (in PEOA3).		cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TCGTATTCTTCGTACCGCCCT	0.567													56	71					0	0	0.014410	0	0
PDZD7	79955	broad.mit.edu	37	10	102781561	102781561	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:102781561G>A	uc001kso.1	-	6	1076	c.861C>T	c.(859-861)ACC>ACT	p.T287T	PDZD7_uc001ksn.2_Silent_p.T287T	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	287	PDZ 2.					cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CCACCTTGATGGTCAGCATGA	0.552													137	159					0	0	0.014410	0	0
SFXN3	81855	broad.mit.edu	37	10	102795274	102795274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:102795274G>A	uc001ksp.2	+	4	650	c.194G>A	c.(193-195)GGG>GAG	p.G65E	SFXN3_uc001ksq.2_Missense_Mutation_p.G65E|SFXN3_uc010qpx.1_Missense_Mutation_p.G65E	NM_030971	NP_112233	Q9BWM7	SFXN3_HUMAN	sideroflexin 3	65					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GTGACCCCAGGGATCACCGAG	0.642													39	41					0	0	0.011902	0	0
FBXW4	6468	broad.mit.edu	37	10	103433355	103433355	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:103433355G>A	uc001kto.2	-	3	778	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	144					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		CATCTGGACGGAACTGGTAGG	0.483													47	45					0	0	0.014410	0	0
C10orf32	119032	broad.mit.edu	37	10	104620124	104620124	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:104620124G>A	uc001kwh.2	+	2	254	c.177G>A	c.(175-177)CAG>CAA	p.Q59Q	C10orf32_uc001kwi.2_Silent_p.Q59Q|AS3MT_uc001kwj.2_5'UTR	NM_144591	NP_653192	Q96B45	CJ032_HUMAN	hypothetical protein LOC119032	58											0		all_hematologic(284;0.176)|Colorectal(252;0.207)		Epithelial(162;4.32e-09)|all cancers(201;1.14e-07)|BRCA - Breast invasive adenocarcinoma(275;0.217)		TGGTACTCCAGGAAGATGCCA	0.383													27	22					0	0	0.015359	0	0
NT5C2	22978	broad.mit.edu	37	10	104899169	104899169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:104899169G>A	uc001kwo.2	-	4	355	c.169C>T	c.(169-171)CTT>TTT	p.L57F	NT5C2_uc010qqp.1_Missense_Mutation_p.L28F|NT5C2_uc001kwq.2_Missense_Mutation_p.L57F|NT5C2_uc001kwp.2_5'UTR	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	57					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	TCACCAGCAAGGGTATAATCC	0.343													3	6					0	0	0.004672	0	0
LOC729020	729020	broad.mit.edu	37	10	105006191	105006191	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:105006191G>A	uc009xxi.2	+	1	548	c.438G>A	c.(436-438)GGG>GGA	p.G146G	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	146					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						TGGAACCGGGGTTTGGAGAGC	0.473													51	69					0	0	0.014410	0	0
COL17A1	1308	broad.mit.edu	37	10	105816879	105816879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:105816879C>T	uc001kxr.2	-	17	1488	c.1319G>A	c.(1318-1320)GGT>GAT	p.G440D	COL17A1_uc010qqv.1_Missense_Mutation_p.G424D	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	440	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		gccaccaacaccgccacctcc	0.458													34	49					0	0	0.010818	0	0
SORCS3	22986	broad.mit.edu	37	10	107005328	107005328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:107005328C>T	uc001kyi.1	+	21	3124	c.2897C>T	c.(2896-2898)TCC>TTC	p.S966F	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	966	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGCAGCATTTCCTTCACATTC	0.448													59	81					0	0	0.014410	0	0
MXI1	4601	broad.mit.edu	37	10	111967831	111967831	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:111967831G>T	uc001kyy.2	+	1	469	c.265G>T	c.(265-267)GAA>TAA	p.E89*	MXI1_uc001kyz.2_5'Flank	NM_130439	NP_569157	P50539	MXI1_HUMAN	MAX interactor 1 isoform b	25					cytoplasmic sequestering of transcription factor|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription corepressor activity				0		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;1.33e-05)|all cancers(201;0.000277)|BRCA - Breast invasive adenocarcinoma(275;0.127)		GATCGAGAAAGAAAACAAAAG	0.577													22	34					1.55469e-16	1.58226e-16	0.018920	1	0
ACSL5	51703	broad.mit.edu	37	10	114158657	114158657	+	Splice_Site	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:114158657A>T	uc001kzs.2	+	3	298	c.157_splice	c.e3-2	p.G53_splice	ACSL5_uc001kzt.2_Splice_Site_p.G53_splice|ACSL5_uc001kzu.2_Splice_Site_p.G109_splice|ACSL5_uc009xxz.2_Splice_Site_p.G53_splice	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5						fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CTTGTGTCTTAGGGAGGAGCA	0.438													32	53					0	0	0.017118	0	0
TCF7L2	6934	broad.mit.edu	37	10	114799871	114799871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:114799871C>T	uc001lae.3	+	5	1045	c.538C>T	c.(538-540)CCG>TCG	p.P180S	TCF7L2_uc001lac.3_Missense_Mutation_p.P157S|TCF7L2_uc010qrk.1_Missense_Mutation_p.P157S|TCF7L2_uc010qrl.1_Missense_Mutation_p.P157S|TCF7L2_uc010qrm.1_Missense_Mutation_p.P180S|TCF7L2_uc010qrn.1_Intron|TCF7L2_uc001lad.3_Missense_Mutation_p.P157S|TCF7L2_uc001lag.3_Missense_Mutation_p.P157S|TCF7L2_uc001laf.3_Missense_Mutation_p.P157S|TCF7L2_uc010qro.1_Missense_Mutation_p.P157S|TCF7L2_uc001lah.2_Missense_Mutation_p.P157S|TCF7L2_uc010qrp.1_Missense_Mutation_p.P157S|TCF7L2_uc010qrq.1_Missense_Mutation_p.P157S|TCF7L2_uc010qrr.1_Missense_Mutation_p.P51S|TCF7L2_uc010qrs.1_Missense_Mutation_p.P51S|TCF7L2_uc010qrt.1_Missense_Mutation_p.P51S|TCF7L2_uc010qru.1_Missense_Mutation_p.P27S	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	180	Pro-rich.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GTCCCCATCACCGGCACACAT	0.493													58	92					0	0	0.014410	0	0
HABP2	3026	broad.mit.edu	37	10	115337790	115337790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:115337790C>T	uc001lai.3	+	6	557	c.454C>T	c.(454-456)CCT>TCT	p.P152S	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Silent_p.F140F	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	152	EGF-like 3.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CACAGTGGTTCCTGTATGCAG	0.557													50	68					0	0	0.014410	0	0
C10orf118	55088	broad.mit.edu	37	10	115889665	115889665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:115889665G>A	uc001lbb.1	-	13	2819	c.2167C>T	c.(2167-2169)CGT>TGT	p.R723C	C10orf118_uc009xyd.1_Missense_Mutation_p.R321C|C10orf118_uc001lbc.1_Missense_Mutation_p.R723C|C10orf118_uc009xye.1_RNA	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	723	Ser-rich.									ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		GAACTAGAACGACTTCCCATG	0.294													40	40					0	0	0.010771	0	0
ABLIM1	3983	broad.mit.edu	37	10	116213220	116213220	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:116213220C>T	uc010qsg.1	-	13	1563	c.1464G>A	c.(1462-1464)CGG>CGA	p.R488R	ABLIM1_uc010qsh.1_Silent_p.R456R|ABLIM1_uc010qsi.1_Silent_p.R428R|ABLIM1_uc010qsk.1_Silent_p.R412R|ABLIM1_uc009xyp.2_Silent_p.R450R|ABLIM1_uc010qsf.1_Intron|ABLIM1_uc009xyn.2_Intron|ABLIM1_uc010qsj.1_Intron|ABLIM1_uc009xyo.2_Intron	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	488					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GAGGGGAGTTCCGGCCGCTGG	0.488													40	37					0	0	0.008740	0	0
ATRNL1	26033	broad.mit.edu	37	10	117061531	117061531	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:117061531G>A	uc001lcg.2	+	17	3182	c.2796G>A	c.(2794-2796)GAG>GAA	p.E932E	ATRNL1_uc010qsm.1_Silent_p.E107E|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	932	PSI 4.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AATGTCTAGAGTGGCAAACTG	0.393													19	32					0	0	0.010504	0	0
GFRA1	2674	broad.mit.edu	37	10	117849333	117849333	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:117849333C>T	uc001lcj.2	-	9	1814	c.1116G>A	c.(1114-1116)CGG>CGA	p.R372R	GFRA1_uc001lci.2_Silent_p.R367R|GFRA1_uc009xyr.2_Silent_p.R367R	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	372					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TGTTCTTAACCCGGAGGGCAG	0.537													32	50					0	0	0.010818	0	0
C10orf96	374355	broad.mit.edu	37	10	118100268	118100268	+	Missense_Mutation	SNP	C	T	T	rs117513116		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:118100268C>T	uc001lck.2	+	4	439	c.188C>T	c.(187-189)TCC>TTC	p.S63F		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	63	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		TTTGAAAAATCCTTCTTCTTA	0.294													6	16					0	0	0.021553	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118352031	118352031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:118352031G>A	uc001lco.1	+	4	326	c.308G>A	c.(307-309)AGC>AAC	p.S103N	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.S103N|PNLIPRP1_uc001lcn.2_Missense_Mutation_p.S103N|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	103					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		GGAGATGAGAGCTGGGTGACA	0.483													48	48					0	0	0.014410	0	0
SLC18A2	6571	broad.mit.edu	37	10	119003739	119003739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:119003739G>A	uc001ldd.1	+	3	410	c.379G>A	c.(379-381)GAA>AAA	p.E127K	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	127	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CCTCCTGAATGAAAACGTGCA	0.527													31	52					0	0	0.008361	0	0
NANOS1	340719	broad.mit.edu	37	10	120789672	120789672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:120789672G>A	uc009xzf.1	+	1	445	c.359G>A	c.(358-360)GGC>GAC	p.G120D		NM_199461	NP_955631	Q8WY41	NANO1_HUMAN	nanos homolog 1	120					epithelial cell migration	perinuclear region of cytoplasm	protein binding|RNA binding|translation repressor activity|zinc ion binding				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0193)		gggtcccggggccgcTACCTG	0.388													3	4					0	0	0.009096	0	0
SEC23IP	11196	broad.mit.edu	37	10	121658152	121658152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:121658152C>T	uc001leu.1	+	2	449	c.377C>T	c.(376-378)TCC>TTC	p.S126F	SEC23IP_uc010qtc.1_Intron	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	126	Interaction with SEC23A.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		ACAACTGGATCCCAAGATGTC	0.468													81	100					0	0	0.014410	0	0
FGFR2	2263	broad.mit.edu	37	10	123239450	123239450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:123239450G>A	uc010qtk.1	-	19	3034	c.2387C>T	c.(2386-2388)TCT>TTT	p.S796F	FGFR2_uc010qtg.1_Missense_Mutation_p.S684F|FGFR2_uc010qth.1_Missense_Mutation_p.S681F|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Missense_Mutation_p.S797F|FGFR2_uc010qtl.1_Missense_Mutation_p.S680F|FGFR2_uc010qtm.1_Missense_Mutation_p.S679F|FGFR2_uc001lfg.3_Missense_Mutation_p.S404F|FGFR2_uc001lfk.1_RNA	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	796	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	AGAAAAAACAGAATCATCTCC	0.458		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				47	71					0	0	0.013114	0	0
TACC2	10579	broad.mit.edu	37	10	123989947	123989947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:123989947G>A	uc001lfv.2	+	16	8479	c.8119G>A	c.(8119-8121)GAT>AAT	p.D2707N	TACC2_uc001lfw.2_Missense_Mutation_p.D853N|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron|TACC2_uc001lfz.2_Missense_Mutation_p.D785N|TACC2_uc001lga.2_Intron|TACC2_uc009xzy.2_Intron|TACC2_uc001lgb.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2707						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAGCCACCAGGATGCCAAGGT	0.602													48	66					0	0	0.014410	0	0
BTBD16	118663	broad.mit.edu	37	10	124094426	124094426	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:124094426C>T	uc001lgc.1	+	14	1446	c.1195C>T	c.(1195-1197)CTA>TTA	p.L399L	BTBD16_uc001lgd.1_Silent_p.L398L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	399										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				AACGATTGCTCTATATGGATT	0.323													63	89					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124358388	124358388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:124358388G>A	uc001lgk.1	+	26	3161	c.3055G>A	c.(3055-3057)GAT>AAT	p.D1019N	DMBT1_uc001lgl.1_Missense_Mutation_p.D1009N|DMBT1_uc001lgm.1_Missense_Mutation_p.D520N|DMBT1_uc009xzz.1_Missense_Mutation_p.D1019N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1019	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CACCGTGTGCGATGACAGCTG	0.602													247	363					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124380843	124380843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:124380843G>A	uc001lgk.1	+	41	5274	c.5168G>A	c.(5167-5169)GGC>GAC	p.G1723D	DMBT1_uc001lgl.1_Missense_Mutation_p.G1713D|DMBT1_uc001lgm.1_Missense_Mutation_p.G1095D|DMBT1_uc009xzz.1_Missense_Mutation_p.G1723D|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G426D|DMBT1_uc009yac.1_Missense_Mutation_p.G37D	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1723	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCCCACAAAGGCTGGCTCACC	0.602													70	91					0	0	0.014410	0	0
C10orf120	399814	broad.mit.edu	37	10	124457714	124457714	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:124457714C>T	uc001lgn.2	-	3	575	c.543G>A	c.(541-543)CAG>CAA	p.Q181Q		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	181										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				AGGGTAAAGGCTGATGATTTC	0.502													60	95					0	0	0.014410	0	0
GPR26	2849	broad.mit.edu	37	10	125426514	125426514	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:125426514G>A	uc001lhh.2	+	1	644	c.591G>A	c.(589-591)AAG>AAA	p.K197K		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	197	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				AGGTGCTCAAGGTGGCCCGCT	0.632													12	8					0	0	0.010729	0	0
FANK1	92565	broad.mit.edu	37	10	127685183	127685183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:127685183G>A	uc001ljh.3	+	5	567	c.463G>A	c.(463-465)GGA>AGA	p.G155R	FANK1_uc009yan.2_Missense_Mutation_p.G181R|FANK1_uc001lji.2_Missense_Mutation_p.G149R	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	155	ANK 2.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				TGCCCAGAAAGGATACACCAG	0.403													121	163					0	0	0.014410	0	0
FAM196A	642938	broad.mit.edu	37	10	128973812	128973813	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:128973812_128973813GG>AT	uc001lju.1	-	1	888_889	c.847_848CC>AT	c.(847-849)CCG>ATG	p.P283M	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Missense_Mutation_p.P283M|FAM196A_uc001ljv.1_Missense_Mutation_p.P283M|FAM196A_uc009yap.1_Missense_Mutation_p.P283M	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	283										ovary(2)	2						GTCATCTGCCGGGCAGAGTGAC	0.658													29	28					0	0	0.004672	0	0
FAM196A	642938	broad.mit.edu	37	10	128973962	128973962	+	Missense_Mutation	SNP	C	T	T	rs139810222		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:128973962C>T	uc001lju.1	-	1	739	c.698G>A	c.(697-699)GGG>GAG	p.G233E	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Missense_Mutation_p.G233E|FAM196A_uc001ljv.1_Missense_Mutation_p.G233E|FAM196A_uc009yap.1_Missense_Mutation_p.G233E	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	233										ovary(2)	2						GTTTGGCCTCCCCCGGTCCTG	0.647													21	17					0	0	0.018920	0	0
PTPRE	5791	broad.mit.edu	37	10	129875895	129875895	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:129875895G>A	uc001lkb.2	+	19	2019	c.1740G>A	c.(1738-1740)CAG>CAA	p.Q580Q	PTPRE_uc009yat.2_Silent_p.Q591Q|PTPRE_uc009yau.2_Silent_p.Q580Q|PTPRE_uc001lkd.2_Silent_p.Q522Q|PTPRE_uc010quq.1_Silent_p.Q481Q	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	580	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				AGGCCCGCCAGGAGGAGCAGG	0.672													20	22					0	0	0.016522	0	0
RNH1	6050	broad.mit.edu	37	11	502132	502132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:502132G>A	uc001lpk.1	-	1	1439	c.31C>T	c.(31-33)CAG>TAG	p.Q11*	RNH1_uc001lpl.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lpm.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lpn.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lpo.1_Nonsense_Mutation_p.Q11*|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lpt.1_5'UTR|RNH1_uc001lpq.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lpr.1_Nonsense_Mutation_p.Q11*|RNH1_uc001lps.1_Nonsense_Mutation_p.Q11*|RNH1_uc009ybx.1_Nonsense_Mutation_p.Q11*	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	11	2 X 5 AA tandem repeats of S-L-D-I-Q.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCCTCACACTGGATGTCCAGG	0.627													5	32					0	0	0.001984	0	0
LRRC56	115399	broad.mit.edu	37	11	551919	551919	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:551919C>T	uc010qvz.1	+	11	1495	c.990C>T	c.(988-990)CTC>CTT	p.L330L		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	330										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCAAGTCCTCTGTGGGAACC	0.652													15	62					0	0	0.004990	0	0
MUC6	4588	broad.mit.edu	37	11	1018158	1018158	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1018158T>C	uc001lsw.2	-	31	4694	c.4643A>G	c.(4642-4644)AAC>AGC	p.N1548S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1548	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACTAGTGGGGTTGGGAGTAAT	0.552													137	284					0	0	0.014410	0	0
MUC2	4583	broad.mit.edu	37	11	1093686	1093686	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1093686C>T	uc001lsx.1	+	33	12618	c.12591C>T	c.(12589-12591)CCC>CCT	p.P4197P		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4197						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCACGGGGCCCCCCACCCACA	0.622													92	152					0	0	0.014410	0	0
MUC2	4583	broad.mit.edu	37	11	1093756	1093756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1093756C>T	uc001lsx.1	+	33	12688	c.12661C>T	c.(12661-12663)CCT>TCT	p.P4221S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4221						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GTCCTCAACCCCTCAGACCTC	0.617													69	450					0	0	0.014410	0	0
MUC2	4583	broad.mit.edu	37	11	1095330	1095331	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1095330_1095331CC>TT	uc001lsx.1	+	35	13263_13264	c.13236_13237CC>TT	c.(13234-13239)TGCCCA>TGTTCA	p.P4413S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4413						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCCCCGAGTGCCCAGACTTTGA	0.688													14	47					0	0	0.004672	0	0
MUC5B	727897	broad.mit.edu	37	11	1264202	1264202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1264202G>A	uc009ycr.1	+	47	8297	c.8171G>A	c.(8170-8172)GGG>GAG	p.G2724E	MUC5B_uc001ltb.2_Missense_Mutation_p.G2034E	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2031	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCACAACTGGGGCCACCGGC	0.647													97	235					0	0	0.014410	0	0
MOB2	81532	broad.mit.edu	37	11	1491702	1491702	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1491702G>A	uc010qwz.1	-	5	697	c.507C>T	c.(505-507)AGC>AGT	p.S169S	MOB2_uc001lto.1_Silent_p.S53S|MOB2_uc001ltp.1_5'UTR|MOB2_uc001ltq.1_Silent_p.S132S|MOB2_uc010qwy.1_Silent_p.S53S	NM_053005	NP_443731	Q70IA6	MOB2_HUMAN	HCCA2 protein	138						nucleus|perinuclear region of cytoplasm	metal ion binding				0						ACTCAAAGGAGCTGGGGAATT	0.627													9	55					0	0	0.004482	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642723	1642723	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:1642723A>C	uc009ycy.1	-	4	826	c.739T>G	c.(739-741)TCA>GCA	p.S247A		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	261	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CAGCAGGATGACCCACAACCT	0.592													90	219					0	0	0.014410	0	0
TRPM5	29850	broad.mit.edu	37	11	2444171	2444171	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:2444171C>T	uc001lwm.3	-	1	105	c.96G>A	c.(94-96)GGG>GGA	p.G32G	TRPM5_uc010qxl.1_Silent_p.G32G|TRPM5_uc009ydn.2_Silent_p.G32G	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	32	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TCTTCCCAGACCCTCCAAAGT	0.647													79	155					0	0	0.014410	0	0
KCNQ1	3784	broad.mit.edu	37	11	2592627	2592627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:2592627C>T	uc001lwn.2	+	4	785	c.677C>T	c.(676-678)GCC>GTC	p.A226V	KCNQ1_uc009ydp.1_Intron|KCNQ1_uc001lwo.2_Missense_Mutation_p.A99V	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	226	Helical; Voltage-sensor; Name=Segment S4; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	GCCACGTCGGCCATCAGGTGC	0.677													41	243					0	0	0.014410	0	0
OR51E1	143503	broad.mit.edu	37	11	4673996	4673996	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4673996C>T	uc001lzi.3	+	2	384	c.240C>T	c.(238-240)TCC>TCT	p.S80S		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCACCTCATCCATGCCCAAAA	0.468													24	62					0	0	0.027356	0	0
OR51F1	256892	broad.mit.edu	37	11	4790669	4790669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4790669G>A	uc010qyl.1	-	1	479	c.479C>T	c.(478-480)CCA>CTA	p.P160L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	160						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CAAAAGTAGTGGCAATATTAG	0.403													13	94					0	0	0.016723	0	0
OR51F2	119694	broad.mit.edu	37	11	4842709	4842710	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4842709_4842710CC>TT	uc010qyn.1	+	1	94_95	c.94_95CC>TT	c.(94-96)CCA>TTA	p.P32L		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	32	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GATGGGCATTCCAGGCCTGAAA	0.47													47	232					0	0	0.004672	0	0
OR51F2	119694	broad.mit.edu	37	11	4843021	4843021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4843021C>T	uc010qyn.1	+	1	406	c.406C>T	c.(406-408)CGT>TGT	p.R136C		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCTTTGATCGTTTTGTGGC	0.463													58	122					0	0	0.014410	0	0
OR51S1	119692	broad.mit.edu	37	11	4869671	4869671	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4869671G>A	uc010qyo.1	-	1	768	c.768C>T	c.(766-768)CTC>CTT	p.L256L		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TATAGAAGAGGAGCACTGCAG	0.512													14	71					0	0	0.020292	0	0
OR51S1	119692	broad.mit.edu	37	11	4869859	4869859	+	Missense_Mutation	SNP	G	A	A	rs142743963	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4869859G>A	uc010qyo.1	-	1	580	c.580C>T	c.(580-582)CGT>TGT	p.R194C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCCAAACGAGCCACATCT	0.552													28	54					0	0	0.009535	0	0
OR51S1	119692	broad.mit.edu	37	11	4869952	4869952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4869952G>A	uc010qyo.1	-	1	487	c.487C>T	c.(487-489)CTC>TTC	p.L163F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCAGATGGAGACCCAGGCAT	0.557													11	95					0	0	0.008291	0	0
OR51G1	79324	broad.mit.edu	37	11	4944799	4944799	+	Missense_Mutation	SNP	C	T	T	rs139551574	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4944799C>T	uc010qyr.1	-	1	771	c.771G>A	c.(769-771)ATG>ATA	p.M257I		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAAGCCAATCATGGGGATGT	0.532													30	49					0	0	0.007291	0	0
OR51A4	401666	broad.mit.edu	37	11	4967863	4967863	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4967863G>A	uc010qys.1	-	1	468	c.468C>T	c.(466-468)CTC>CTT	p.L156L		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAGAACCAGGAGCATGCTCT	0.428													10	297					0	0	0.024245	0	0
OR51A2	401667	broad.mit.edu	37	11	4976476	4976476	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:4976476G>A	uc010qyt.1	-	1	468	c.468C>T	c.(466-468)CTC>CTT	p.L156L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAGAACCAGGAGCATGCTCT	0.428													12	135					0	0	0.006122	0	0
OR52E2	119678	broad.mit.edu	37	11	5079978	5079978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5079978C>T	uc010qyw.1	-	1	880	c.880G>A	c.(880-882)GGA>AGA	p.G294R		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	294	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GTTCTGACTCCATATATGACA	0.408													11	51					0	0	0.013537	0	0
HBB	3043	broad.mit.edu	37	11	5248179	5248179	+	Missense_Mutation	SNP	C	T	T	rs121909817		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5248179C>T	uc001mae.1	-	1	123	c.73G>A	c.(73-75)GGT>AGT	p.G25S		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	25			G -> V (in Savannah; unstable).|G -> D (in Moscva; O(2) affinity down; unstable).|G -> R (in Riverdale-Bronx; O(2) affinity up; unstable).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	GCCTCACCACCAACTTCATCC	0.512									Sickle_Cell_Trait				18	42					0	0	0.012319	0	0
OR51B2	79345	broad.mit.edu	37	11	5345133	5345133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5345133G>A	uc001mao.1	-	1	450	c.395C>T	c.(394-396)TCC>TTC	p.S132F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGAGAATGGAAGCATATCT	0.418													11	54					0	0	0.010729	0	0
OR51B5	282763	broad.mit.edu	37	11	5363955	5363955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5363955G>A	uc001map.1	-	1	800	c.800C>T	c.(799-801)CCA>CTA	p.P267L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AACAATATGTGGAACCTGCTT	0.408													18	46					0	0	0.004990	0	0
OR51B6	390058	broad.mit.edu	37	11	5373596	5373596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5373596C>T	uc010qzb.1	+	1	859	c.859C>T	c.(859-861)CCA>TCA	p.P287S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTTATGAACCCATTTATCTA	0.393													16	111					0	0	0.024245	0	0
OR52D1	390066	broad.mit.edu	37	11	5510839	5510839	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5510839G>A	uc010qzg.1	+	1	903	c.903G>A	c.(901-903)AAG>AAA	p.K301K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTAGAACCAAGGAGATTCGGA	0.453													11	40					0	0	0.008291	0	0
OR52B6	340980	broad.mit.edu	37	11	5602888	5602888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5602888G>A	uc010qzi.1	+	1	782	c.782G>A	c.(781-783)GGA>GAA	p.G261E	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	261	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTACCTGTGGATCCCATATC	0.488													53	273					0	0	0.014410	0	0
OR52N2	390077	broad.mit.edu	37	11	5842052	5842052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5842052C>T	uc010qzp.1	+	1	487	c.487C>T	c.(487-489)CTC>TTC	p.L163F	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCATTCACTCTCCTCACCAA	0.537													21	92					0	0	0.008871	0	0
OR52E6	390078	broad.mit.edu	37	11	5862892	5862892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5862892G>A	uc010qzq.1	-	1	236	c.236C>T	c.(235-237)ACC>ATC	p.T79I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTGGGAATGGTGGCCGTAGA	0.453													27	65					0	0	0.027356	0	0
OR52E4	390081	broad.mit.edu	37	11	5906312	5906312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5906312C>T	uc010qzs.1	+	1	790	c.790C>T	c.(790-792)CGT>TGT	p.R264C	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATGACACATCGTTTTGGCCA	0.428													11	57					0	0	0.008291	0	0
OR56A5	390084	broad.mit.edu	37	11	5989598	5989598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:5989598C>T	uc010qzu.1	-	1	127	c.127G>A	c.(127-129)GGG>AGG	p.G43R		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	43	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GCATTGGCCCCCATGGCCAGG	0.567													17	26					0	0	0.006122	0	0
OR52L1	338751	broad.mit.edu	37	11	6008029	6008029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6008029C>T	uc001mcd.2	-	1	187	c.132G>A	c.(130-132)TGG>TGA	p.W44*		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGTGCAATCCAGTGCTGGC	0.488													18	36					0	0	0.004990	0	0
OR56A4	120793	broad.mit.edu	37	11	6023558	6023558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6023558G>A	uc010qzv.1	-	1	821	c.821C>T	c.(820-822)TCT>TTT	p.S274F		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAATATAAAAGAATAGGAGAT	0.463													6	46					0	0	0.001984	0	0
OR56A4	120793	broad.mit.edu	37	11	6024232	6024232	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6024232C>T	uc010qzv.1	-	1	147	c.147G>A	c.(145-147)AGG>AGA	p.R49R		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTAAAGTTTCCTGATCAATC	0.463													9	58					0	0	0.004482	0	0
CNGA4	1262	broad.mit.edu	37	11	6265277	6265277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6265277G>A	uc001mco.2	+	6	1473	c.1366G>A	c.(1366-1368)GAG>AAG	p.E456K	CNGA4_uc010raa.1_3'UTR|CNGA4_uc001mcn.2_3'UTR	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	456	cNMP.|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGCTGAGCGAGTATCCACA	0.537													44	76					0	0	0.010771	0	0
CCKBR	887	broad.mit.edu	37	11	6292693	6292693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6292693G>A	uc001mcp.2	+	5	1457	c.1264G>A	c.(1264-1266)GAT>AAT	p.D422N	CCKBR_uc001mcq.2_Missense_Mutation_p.D350N|CCKBR_uc001mcr.2_Missense_Mutation_p.D405N|CCKBR_uc001mcs.2_Missense_Mutation_p.D491N	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	422	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GGCTCTTCCCGATGAGGACCC	0.657													18	106					0	0	0.006122	0	0
TPP1	1200	broad.mit.edu	37	11	6638288	6638288	+	Missense_Mutation	SNP	G	A	A	rs121908205		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6638288G>A	uc001mel.1	-	6	666	c.605C>T	c.(604-606)CCC>CTC	p.P202L	TPP1_uc001mek.1_5'UTR|TPP1_uc010rar.1_3'UTR	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	202					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GATCACAGAGGGGGTTACCCC	0.587													47	66					0	0	0.013114	0	0
OR2D2	120776	broad.mit.edu	37	11	6913459	6913459	+	Silent	SNP	G	A	A	rs149994988		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6913459G>A	uc010rau.1	-	1	273	c.273C>T	c.(271-273)GTC>GTT	p.V91V		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGAATGCAATGACCTTCTTTC	0.463													5	37					0	0	0.014758	0	0
OR2D3	120775	broad.mit.edu	37	11	6942547	6942547	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:6942547G>A	uc010rav.1	+	1	315	c.315G>A	c.(313-315)AGG>AGA	p.R105R		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	105	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGGTAAAGAGGAAAACCATTT	0.418													33	161					0	0	0.010818	0	0
NLRP14	338323	broad.mit.edu	37	11	7064301	7064301	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:7064301G>A	uc001mfb.1	+	4	1367	c.1044G>A	c.(1042-1044)TGG>TGA	p.W348*		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	348	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ATAAGAGGTGGGCCATGAAAG	0.428													13	73					0	0	0.016723	0	0
RIC3	79608	broad.mit.edu	37	11	8132611	8132611	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:8132611C>T	uc001mgd.2	-	6	798	c.744G>A	c.(742-744)GTG>GTA	p.V248V	RIC3_uc001mgb.2_Silent_p.V86V|RIC3_uc001mgc.2_Silent_p.V247V|RIC3_uc001mge.2_Silent_p.V66V|RIC3_uc010rbl.1_Silent_p.V198V|RIC3_uc010rbm.1_Silent_p.V276V|RIC3_uc009yfm.2_Silent_p.V167V|RIC3_uc009yfn.2_Silent_p.V51V	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	248	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		CAGGGTAATCCACCAAGATTG	0.403													30	80					0	0	0.007291	0	0
STK33	65975	broad.mit.edu	37	11	8474411	8474411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:8474411C>T	uc001mgi.1	-	7	1748	c.829G>A	c.(829-831)GAA>AAA	p.E277K	STK33_uc001mgj.1_Missense_Mutation_p.E277K|STK33_uc001mgk.1_Missense_Mutation_p.E277K|STK33_uc010rbn.1_Missense_Mutation_p.E236K|STK33_uc001mgl.3_Missense_Mutation_p.E90K|STK33_uc009yfp.2_5'UTR	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	277	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		AGCATGGCTTCACTCCTACTT	0.368													73	138					0	0	0.014410	0	0
AMPD3	272	broad.mit.edu	37	11	10518431	10518431	+	Silent	SNP	C	T	T	rs78473994	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:10518431C>T	uc001mio.1	+	10	1838	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	AMPD3_uc010rbz.1_Silent_p.F342F|AMPD3_uc001min.1_Silent_p.F510F|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Silent_p.F508F|AMPD3_uc009yfy.2_Silent_p.F501F	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	501					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGCCCCTTTTCAAGGCCACTA	0.507													52	187					0	0	0.014410	0	0
CTR9	9646	broad.mit.edu	37	11	10776652	10776652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:10776652C>T	uc001mja.2	+	3	441	c.292C>T	c.(292-294)CGG>TGG	p.R98W		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	98					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		ACAACAGGCTCGGAAAGAAAA	0.373													30	128					0	0	0.010818	0	0
MICALCL	84953	broad.mit.edu	37	11	12316171	12316171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:12316171C>T	uc001mkg.1	+	3	1484	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	398					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		TCACTTTTTTCCTCCCTCAGA	0.453													50	198					0	0	0.014410	0	0
SPON1	10418	broad.mit.edu	37	11	14063132	14063132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:14063132C>T	uc001mle.2	+	3	948	c.410C>T	c.(409-411)CCA>CTA	p.P137L		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	137	Reelin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GAAAGCACTCCACGGAGGAGG	0.473													37	157					0	0	0.019004	0	0
TPH1	7166	broad.mit.edu	37	11	18054885	18054885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:18054885G>A	uc001mnp.2	-	3	364	c.338C>T	c.(337-339)TCT>TTT	p.S113F	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	113					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	GTCCAGGTCAGAAATCTTCTT	0.289													44	258					0	0	0.014410	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18637314	18637314	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:18637314G>A	uc001moy.2	-	3	723	c.507C>T	c.(505-507)TTC>TTT	p.F169F	SPTY2D1_uc010rdi.1_Silent_p.F169F	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	169										breast(1)	1						GTAAATCAGTGAAGTTCATGG	0.468													34	181					0	0	0.013726	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955789	18955789	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:18955789G>A	uc001mpg.2	-	1	761	c.543C>T	c.(541-543)GTC>GTT	p.V181V		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	181	Helical; Name=5; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TCAGCCACGCGACTGTGATGA	0.527													20	122					0	0	0.007413	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956034	18956034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:18956034G>A	uc001mpg.2	-	1	516	c.298C>T	c.(298-300)CCT>TCT	p.P100S		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	100	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ATCATCACAGGATAGAGGATT	0.537													68	284					0	0	0.014410	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077395	19077395	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:19077395G>A	uc001mph.2	-	2	643	c.555C>T	c.(553-555)TTC>TTT	p.F185F		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	185	Helical; Name=5; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						CTGCAGTGATGAAATCAAATG	0.517													20	76					0	0	0.010504	0	0
ZDHHC13	54503	broad.mit.edu	37	11	19169202	19169202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:19169202C>T	uc001mpi.2	+	4	461	c.356C>T	c.(355-357)CCT>CTT	p.P119L	ZDHHC13_uc001mpj.2_5'UTR	NM_019028	NP_061901	Q8IUH4	ZDH13_HUMAN	zinc finger, DHHC domain containing 13 isoform	119	ANK 2.				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|palmitoyltransferase activity|signal transducer activity|zinc ion binding				0						AATTCAACTCCTCTTCACTGG	0.289													5	10					0	0	0.003080	0	0
SLC6A5	9152	broad.mit.edu	37	11	20623211	20623211	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:20623211G>A	uc001mqd.2	+	2	813	c.540G>A	c.(538-540)CAG>CAA	p.Q180Q	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	180	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TTGCCACCCAGGTAAGCAGGT	0.657													6	36					0	0	0.001984	0	0
ANO5	203859	broad.mit.edu	37	11	22283728	22283728	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:22283728C>T	uc001mqi.2	+	16	2001	c.1684C>T	c.(1684-1686)CTG>TTG	p.L562L	ANO5_uc001mqj.2_Silent_p.L561L	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	562	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GAAAATGTTCCTGTTTCAGTT	0.323													16	90					0	0	0.028581	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399224	22399224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:22399224G>A	uc001mqk.2	+	12	2100	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	563	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AAAGAAAGAGGAATTTGTACA	0.363													5	46					0	0	0.014758	0	0
GAS2	2620	broad.mit.edu	37	11	22707215	22707215	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:22707215G>A	uc009yie.2	+	3	453	c.147G>A	c.(145-147)GGG>GGA	p.G49G	GAS2_uc001mqm.2_Silent_p.G49G|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Silent_p.G49G	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	49	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						TTATTTCAGGGAAGGAGATTA	0.343													14	66					0	0	0.004990	0	0
LUZP2	338645	broad.mit.edu	37	11	24759776	24759776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:24759776G>A	uc001mqs.2	+	4	495	c.261G>A	c.(259-261)ATG>ATA	p.M87I	LUZP2_uc009yif.2_Missense_Mutation_p.M1I|LUZP2_uc009yig.2_Missense_Mutation_p.M87I	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	87	Potential.					extracellular region				ovary(1)|skin(1)	2						GAGAAGAAATGAAGTCTCTTC	0.353													9	22					0	0	0.006214	0	0
ANO3	63982	broad.mit.edu	37	11	26463553	26463553	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:26463553T>C	uc001mqt.3	+	2	280	c.135T>C	c.(133-135)GCT>GCC	p.A45A	ANO3_uc010rdr.1_Silent_p.A29A	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	45	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGAGCTACGCTTACTCAAAGA	0.463													42	267					0	0	0.008740	0	0
CAT	847	broad.mit.edu	37	11	34475378	34475378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:34475378C>T	uc001mvm.2	+	6	699	c.616C>T	c.(616-618)CCA>TCA	p.P206S	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	206					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	TCGGGGGATTCCAGATGGACA	0.343													16	88					0	0	0.006122	0	0
RAG1	5896	broad.mit.edu	37	11	36594964	36594964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:36594964C>T	uc001mwu.3	+	2	234	c.110C>T	c.(109-111)TCC>TTC	p.S37F	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	37	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CGGGTGAGATCCTTTGAAAAG	0.458									Familial_Hemophagocytic_Lymphohistiocytosis				24	64					0	0	0.021523	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136054	40136054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:40136054G>A	uc001mxa.1	-	2	3753	c.1789C>T	c.(1789-1791)CAC>TAC	p.H597Y	LRRC4C_uc001mxc.1_Missense_Mutation_p.H593Y|LRRC4C_uc001mxd.1_Missense_Mutation_p.H593Y|LRRC4C_uc001mxb.1_Missense_Mutation_p.H593Y	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	597					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GAGTTATAGTGATTTAGGTGC	0.408													13	100					0	0	0.016723	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136856	40136856	+	Silent	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:40136856C>A	uc001mxa.1	-	2	2951	c.987G>T	c.(985-987)CGG>CGT	p.R329R	LRRC4C_uc001mxc.1_Silent_p.R325R|LRRC4C_uc001mxd.1_Silent_p.R325R|LRRC4C_uc001mxb.1_Silent_p.R325R	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	329	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GAGTGTTACACCGGGCACAAC	0.507													7	40					5.18039e-06	5.24658e-06	0.003080	1	0
LRRC4C	57689	broad.mit.edu	37	11	40137536	40137536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:40137536C>T	uc001mxa.1	-	2	2271	c.307G>A	c.(307-309)GAA>AAA	p.E103K	LRRC4C_uc001mxc.1_Missense_Mutation_p.E99K|LRRC4C_uc001mxd.1_Missense_Mutation_p.E99K|LRRC4C_uc001mxb.1_Missense_Mutation_p.E99K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	103	LRR 2.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGTAGGATTTCCAAGTGTCTC	0.468													11	35					0	0	0.008291	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137648	40137648	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:40137648T>A	uc001mxa.1	-	2	2159	c.195A>T	c.(193-195)AAA>AAT	p.K65N	LRRC4C_uc001mxc.1_Missense_Mutation_p.K61N|LRRC4C_uc001mxd.1_Missense_Mutation_p.K61N|LRRC4C_uc001mxb.1_Missense_Mutation_p.K61N	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	65	LRRNT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CACGCAGGTTTTTCCGAACAC	0.527													20	25					0	0	0.010504	0	0
ALX4	60529	broad.mit.edu	37	11	44297126	44297126	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:44297126C>T	uc001myb.2	-	2	653	c.549G>A	c.(547-549)AAG>AAA	p.K183K		NM_021926	NP_068745	Q9H161	ALX4_HUMAN	aristaless-like homeobox 4	183					hair follicle development						0						CCCCAGCCTCCTTGACACTCA	0.617													38	132					0	0	0.023175	0	0
TSPAN18	90139	broad.mit.edu	37	11	44941473	44941473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:44941473G>A	uc001mye.3	+	6	699	c.538G>A	c.(538-540)GAA>AAA	p.E180K	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Missense_Mutation_p.E180K	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	180	Extracellular (Potential).					integral to membrane					0						CTGCCGGAGGGAACCCCAAAG	0.597													42	209					0	0	0.014410	0	0
TSPAN18	90139	broad.mit.edu	37	11	44941525	44941525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:44941525G>A	uc001mye.3	+	6	751	c.590G>A	c.(589-591)GGA>GAA	p.G197E	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Missense_Mutation_p.G197E	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	197	Extracellular (Potential).					integral to membrane					0						TGCCTCCTGGGAAGGAGCCTA	0.637													54	97					0	0	0.014410	0	0
CHST1	8534	broad.mit.edu	37	11	45671922	45671922	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:45671922C>T	uc001mys.1	-	4	1223	c.552G>A	c.(550-552)AAG>AAA	p.K184K		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	184	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GTAGCCCGCACTTGCGCACAC	0.731													17	78					0	0	0.004990	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45945705	45945705	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:45945705G>A	uc001nbv.1	+	4	480	c.369G>A	c.(367-369)AGG>AGA	p.R123R	GYLTL1B_uc001nbw.1_Silent_p.R92R|GYLTL1B_uc001nbx.1_Silent_p.R123R|GYLTL1B_uc001nby.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	123	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CACCCAAAAGGAAAAATCCAC	0.597													30	133					0	0	0.010818	0	0
SPI1	6688	broad.mit.edu	37	11	47399862	47399862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:47399862G>A	uc001nfc.1	-	1	266	c.43C>T	c.(43-45)CCT>TCT	p.P15S	SPI1_uc001nfb.1_Missense_Mutation_p.P15S|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.P9S	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	15					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GTACTCACAGGGGGGACGAGG	0.682													3	35					0	0	0.014758	0	0
PTPRJ	5795	broad.mit.edu	37	11	48185152	48185152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:48185152C>T	uc001ngp.3	+	23	4056	c.3701C>T	c.(3700-3702)CCG>CTG	p.P1234L		NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	1234	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).			P -> E (in Ref. 5; no nucleotide entry).	contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						CCCGAATCGCCGATTCTGGTG	0.463													12	49					0	0	0.013537	0	0
OR4S1	256148	broad.mit.edu	37	11	48328225	48328225	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:48328225T>A	uc010rhu.1	+	1	451	c.451T>A	c.(451-453)TTC>ATC	p.F151I		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTTAGCTGGCTTCCTGCATTC	0.557													50	65					0	0	0.014410	0	0
OR4C3	256144	broad.mit.edu	37	11	48346802	48346802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:48346802C>T	uc010rhv.1	+	1	310	c.310C>T	c.(310-312)CCT>TCT	p.P104S		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCTATGGCTCCTAAACTCAT	0.463													46	184					0	0	0.014410	0	0
OR4C3	256144	broad.mit.edu	37	11	48346885	48346885	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:48346885T>A	uc010rhv.1	+	1	393	c.393T>A	c.(391-393)TTT>TTA	p.F131L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGCTCATTTTTTGGGAGGTG	0.468													16	252					0	0	0.010818	0	0
OR4A47	403253	broad.mit.edu	37	11	48510731	48510731	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:48510731T>A	uc010rhx.1	+	1	387	c.387T>A	c.(385-387)CAT>CAA	p.H129Q		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGCCCTTGCATTATTTGGTTA	0.463													9	41					0	0	0.004482	0	0
LOC441601	441601	broad.mit.edu	37	11	50254422	50254422	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:50254422G>A	uc001nhd.2	-	2		c.357C>T				NR_003034				Homo sapiens septin 7 pseudogene, transcript variant 2, mRNA (cDNA clone IMAGE:5265802).												0						TTAATTCTGTGAGAAGGACCT	0.328													6	39					0	0	0.021553	0	0
OR4C15	81309	broad.mit.edu	37	11	55322738	55322738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:55322738C>T	uc010rig.1	+	1	956	c.956C>T	c.(955-957)TCC>TTC	p.S319F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGCTTTTTCCCTTGACAAA	0.403										HNSCC(20;0.049)			37	70					0	0	0.025465	0	0
OR5D13	390142	broad.mit.edu	37	11	55541558	55541558	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:55541558C>T	uc010ril.1	+	1	645	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GCCTAATTATCATTCTGACAT	0.438													19	41					0	0	0.010504	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735717	55735717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:55735717C>T	uc010rit.1	-	1	223	c.223G>A	c.(223-225)GAC>AAC	p.D75N		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	75	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					GTCCAAATGTCCATGAGCATT	0.383													41	69					0	0	0.007835	0	0
OR8H3	390152	broad.mit.edu	37	11	55890659	55890659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:55890659G>A	uc001nii.1	+	1	811	c.811G>A	c.(811-813)GAT>AAT	p.D271N		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					CTTGGGAAGAGATCAAGTGGC	0.373													39	45					0	0	0.021022	0	0
OR5T2	219464	broad.mit.edu	37	11	55999685	55999685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:55999685G>A	uc010rjc.1	-	1	977	c.977C>T	c.(976-978)CCC>CTC	p.P326L		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	326	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GTAGATGACGGGATTCAGCAA	0.343													44	62					0	0	0.014410	0	0
OR5T2	219464	broad.mit.edu	37	11	56000028	56000028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56000028C>T	uc010rjc.1	-	1	634	c.634G>A	c.(634-636)GAA>AAA	p.E212K		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	212	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CGCCTAATTTCATTGGCTCCA	0.418													44	75					0	0	0.009718	0	0
OR5T3	390154	broad.mit.edu	37	11	56019945	56019945	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56019945T>A	uc010rjd.1	+	1	270	c.270T>A	c.(268-270)TAT>TAA	p.Y90*		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	90	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					ACCCCATGTATTATTTTCTTA	0.348													26	38					0	0	0.024334	0	0
OR8K3	219473	broad.mit.edu	37	11	56085842	56085842	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56085842C>T	uc010rjf.1	+	1	60	c.60C>T	c.(58-60)ATC>ATT	p.I20I		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.I20I(1)		ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TCACAGATATCGCTGAGCTGC	0.433													32	46					0	0	0.012213	0	0
OR8K3	219473	broad.mit.edu	37	11	56085890	56085890	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56085890G>A	uc010rjf.1	+	1	108	c.108G>A	c.(106-108)GTG>GTA	p.V36V		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGATCTATGTGATCTCAGTGA	0.433													44	67					0	0	0.014410	0	0
OR8K3	219473	broad.mit.edu	37	11	56086049	56086049	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56086049G>A	uc010rjf.1	+	1	267	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TTGTGGATAAGAATATAATTT	0.353													26	38					0	0	0.021523	0	0
OR8K1	390157	broad.mit.edu	37	11	56114262	56114262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56114262C>T	uc010rjg.1	+	1	748	c.748C>T	c.(748-750)CAT>TAT	p.H250Y		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CTGTAGCTCTCATCTGACAGT	0.408										HNSCC(65;0.19)			15	23					0	0	0.020292	0	0
OR5M3	219482	broad.mit.edu	37	11	56237476	56237476	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56237476G>A	uc010rjk.1	-	1	498	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTTTTCCACAGAAGTACAAGC	0.398													30	39					0	0	0.009535	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409140	56409140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56409140C>T	uc001njb.1	-	1	776	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GAGGATTGTTCCAAAGAATAT	0.448													44	79					0	0	0.011902	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756601	56756601	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:56756601C>T	uc010rjp.1	+	1	213	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTGTTGATATCTGTTACACTT	0.353													26	31					0	0	0.021523	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57076666	57076666	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:57076666G>A	uc001njr.2	-	5	3831	c.3519C>T	c.(3517-3519)TCC>TCT	p.S1173S	TNKS1BP1_uc001njs.2_Silent_p.S1173S|TNKS1BP1_uc009ymd.1_Silent_p.S624S	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1173	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CCACACAGCTGGACACTTCCA	0.607													56	66					0	0	0.014410	0	0
CLP1	10978	broad.mit.edu	37	11	57427179	57427179	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:57427179C>T	uc001nkw.2	+	2	370	c.231C>T	c.(229-231)GGC>GGT	p.G77G	CLP1_uc010rjw.1_Silent_p.G77G|CLP1_uc009yml.2_Silent_p.G77G	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	77					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						AACTGAGCGGCCGCACTGAGG	0.517													34	66					0	0	0.021022	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947137	57947137	+	Missense_Mutation	SNP	C	T	T	rs147196085		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:57947137C>T	uc001nmj.2	+	3	537	c.221C>T	c.(220-222)TCA>TTA	p.S74L		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				GTCTGCTACTCATCTATCACT	0.493													45	64					0	0	0.014410	0	0
OR1S2	219958	broad.mit.edu	37	11	57970739	57970739	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:57970739C>T	uc010rkb.1	-	1	915	c.915G>A	c.(913-915)TTG>TTA	p.L305L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	305	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTTATTCCTCAAGCTGTAGA	0.438													47	70					0	0	0.014410	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722784	58722784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:58722784G>A	uc001nnf.2	+	7	825	c.449G>A	c.(448-450)GGA>GAA	p.G150E	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.G181E|GLYATL1_uc001nni.1_Missense_Mutation_p.G150E|GLYATL1_uc001nnj.1_Missense_Mutation_p.G150E			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	150						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	AGCAAGCTTGGAAGCTGGGCT	0.408													36	48					0	0	0.013726	0	0
VWCE	220001	broad.mit.edu	37	11	61026432	61026432	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:61026432G>A	uc001nra.2	-	20	2862	c.2583C>T	c.(2581-2583)TCC>TCT	p.S861S	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	861	Pro-rich.					extracellular region	calcium ion binding			ovary(1)	1						GAGCCCCTGGGGAAGCTAGAG	0.672													25	20					0	0	0.027356	0	0
SYT7	9066	broad.mit.edu	37	11	61323677	61323677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:61323677C>T	uc001nrv.2	-	2	40	c.34G>A	c.(34-36)GCG>ACG	p.A12T	SYT7_uc009ynr.2_Missense_Mutation_p.A12T|SYT7_uc001nrx.1_RNA	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	12	Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CGCGAGGGCGCCCCTGGGGAG	0.652													17	29					0	0	0.007413	0	0
AHNAK	79026	broad.mit.edu	37	11	62290342	62290342	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:62290342G>A	uc001ntl.2	-	5	11847	c.11547C>T	c.(11545-11547)ATC>ATT	p.I3849I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3849					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTGGGCCTTCGATATTCACAT	0.493													158	188					0	0	0.014410	0	0
AHNAK	79026	broad.mit.edu	37	11	62291642	62291642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:62291642G>A	uc001ntl.2	-	5	10547	c.10247C>T	c.(10246-10248)TCT>TTT	p.S3416F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3416					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GTCAGGCATAGAAACTTTGGG	0.403													63	60					0	0	0.014410	0	0
MTA2	9219	broad.mit.edu	37	11	62362077	62362077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:62362077G>A	uc001ntq.1	-	16	1984	c.1603C>T	c.(1603-1605)CCT>TCT	p.P535S	TUT1_uc001nto.2_5'Flank|MTA2_uc010rlx.1_Missense_Mutation_p.P362S	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	535					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GTACCCCGAGGTGTTTTTGGT	0.512													41	44					0	0	0.025465	0	0
FERMT3	83706	broad.mit.edu	37	11	63978283	63978283	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:63978283T>G	uc001nyl.2	+	3	510	c.361T>G	c.(361-363)TTC>GTC	p.F121V	FERMT3_uc001nym.2_Missense_Mutation_p.F121V	NM_178443	NP_848537	Q86UX7	URP2_HUMAN	fermitin family homolog 3 long form	121					integrin activation|leukocyte cell-cell adhesion|platelet aggregation|regulation of cell-cell adhesion mediated by integrin	cell junction|cell projection|podosome	integrin binding			ovary(1)	1						CCAGCCCCTCTTCCAGGCTGT	0.667													76	102					0	0	0.014410	0	0
MAP4K2	5871	broad.mit.edu	37	11	64559445	64559445	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:64559445G>A	uc001obh.2	-	27	2120	c.2028C>T	c.(2026-2028)TGC>TGT	p.C676C	MAP4K2_uc001obg.2_RNA|MAP4K2_uc001obi.2_Silent_p.C668C	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	676	CNH.				activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						ACAGGACGCGGCAGCCGGGCC	0.701													7	10					0	0	0.008291	0	0
ATG2A	23130	broad.mit.edu	37	11	64678165	64678165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:64678165C>T	uc001obx.2	-	12	1745	c.1630G>A	c.(1630-1632)GGT>AGT	p.G544S		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	544							protein binding			ovary(1)|central_nervous_system(1)	2						CCCAGCGTACCAGGAAAGGTC	0.667													10	13					0	0	0.008291	0	0
CDC42EP2	10435	broad.mit.edu	37	11	65088615	65088616	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:65088615_65088616CT>TA	uc001odl.2	+	2	696_697	c.246_247CT>TA	c.(244-249)CCCTTC>CCTATC	p.F83I		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	83					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						TCGACCTCCCCTTCCAGTTCAC	0.644													45	55					0	0	0.004672	0	0
MALAT1	378938	broad.mit.edu	37	11	65272040	65272040	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:65272040G>A	uc010roh.1	+	1		c.6808G>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GATTGAAGCTGAGTACATTTT	0.393													23	30					0	0	0.014323	0	0
PCNXL3	399909	broad.mit.edu	37	11	65392945	65392946	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:65392945_65392946CC>TT	uc001oey.2	+	18	3099_3100	c.3099_3100CC>TT	c.(3097-3102)CCCCCG>CCTTCG	p.P1034S	PCNXL3_uc009yqn.2_5'UTR|PCNXL3_uc001oez.2_5'Flank	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1034						integral to membrane					0						GGGCCGAGCCCCCGGACCCCTT	0.698													30	53					0	0	0.004672	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65715081	65715081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:65715081G>A	uc001ogk.1	+	5	817	c.785G>A	c.(784-786)AGG>AAG	p.R262K	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	262											0						GGAGAGCACAGGACTCCCTGC	0.622													26	47					0	0	0.021523	0	0
CATSPER1	117144	broad.mit.edu	37	11	65792909	65792909	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:65792909G>A	uc001ogt.2	-	1	1080	c.942C>T	c.(940-942)CTC>CTT	p.L314L		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	314	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						AGTCGCCATGGAGGTAACTGG	0.363													22	35					0	0	0.018920	0	0
SPTBN2	6712	broad.mit.edu	37	11	66457663	66457663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:66457663G>A	uc001ojd.2	-	27	5729	c.5657C>T	c.(5656-5658)GCC>GTC	p.A1886V	SPTBN2_uc001ojc.1_5'Flank	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1886	Spectrin 15.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCAGGCCTCGGCCACGGCCTG	0.677													48	52					0	0	0.014410	0	0
LOC645332	645332	broad.mit.edu	37	11	67564286	67564286	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:67564286T>A	uc001omt.3	-	3	201	c.178A>T	c.(178-180)AAG>TAG	p.K60*	LOC645332_uc001omu.3_Intron	NR_024249				SubName: Full=cDNA FLJ57700, weakly similar to Protein FAM86A;												0						CACGATGGCTTCTGGGCTATA	0.617													16	18					0	0	0.008871	0	0
ANO1	55107	broad.mit.edu	37	11	69934154	69934154	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:69934154C>T	uc001opj.2	+	2	710	c.405C>T	c.(403-405)CTC>CTT	p.L135L	ANO1_uc001opk.1_Silent_p.L107L|ANO1_uc001opl.1_RNA	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	135	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						AGGGCAACCTCCTGGAGGCGG	0.692													4	6					0	0	0.014758	0	0
DHCR7	1717	broad.mit.edu	37	11	71155062	71155062	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:71155062A>T	uc001oqk.2	-	4	548	c.298T>A	c.(298-300)TAT>AAT	p.Y100N	DHCR7_uc001oql.2_Missense_Mutation_p.Y100N	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	100					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	CACAAGGTATAGAGCTGGGCG	0.627									Smith-Lemli-Opitz_syndrome				16	21					0	0	0.006122	0	0
FAM86C	55199	broad.mit.edu	37	11	71507081	71507081	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:71507081A>T	uc001oqv.3	+	4	306	c.280A>T	c.(280-282)AAG>TAG	p.K94*	FAM86C_uc009ysr.2_Nonsense_Mutation_p.K87*|FAM86C_uc001oqw.3_Nonsense_Mutation_p.K60*|FAM86C_uc009yss.2_RNA|FAM86C_uc010rqq.1_RNA|uc001oqx.1_Intron	NM_018172	NP_060642	Q9NVL1	FA86C_HUMAN	hypothetical protein LOC55199 isoform 1	94											0						TATTGCCCAGAAGCCATCGTG	0.612													11	122					0	0	0.024245	0	0
ARAP1	116985	broad.mit.edu	37	11	72406880	72406880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:72406880C>T	uc001osu.2	-	24	3492	c.3303G>A	c.(3301-3303)ATG>ATA	p.M1101I	ARAP1_uc001osv.2_Missense_Mutation_p.M1101I|ARAP1_uc001osr.2_Missense_Mutation_p.M861I|ARAP1_uc001oss.2_Missense_Mutation_p.M856I|ARAP1_uc009yth.2_Missense_Mutation_p.M795I|ARAP1_uc010rre.1_Missense_Mutation_p.M856I	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1101	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						TGTGCACGTTCATCTGGTTCG	0.537													178	232					0	0	0.014410	0	0
FCHSD2	9873	broad.mit.edu	37	11	72695196	72695196	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:72695196G>A	uc009ytl.2	-	8	863	c.642C>T	c.(640-642)ACC>ACT	p.T214T	FCHSD2_uc010rrg.1_Silent_p.T54T|FCHSD2_uc001oth.3_Silent_p.T158T|FCHSD2_uc001oti.2_Silent_p.T173T	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	214							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			CTGCCGCTAGGGTAAGAAGAT	0.363													124	161					0	0	0.014410	0	0
C2CD3	26005	broad.mit.edu	37	11	73843971	73843971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:73843971G>A	uc001ouu.2	-	7	1362	c.1135C>T	c.(1135-1137)CAC>TAC	p.H379Y	C2CD3_uc001ouv.2_Missense_Mutation_p.H379Y	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	379						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GGGAGGAGGTGATCTTCAATG	0.408													27	49					0	0	0.021523	0	0
LRRC32	2615	broad.mit.edu	37	11	76371863	76371863	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:76371863G>A	uc001oxq.3	-	3	1017	c.774C>T	c.(772-774)TTC>TTT	p.F258F	LRRC32_uc001oxr.3_Silent_p.F258F|LRRC32_uc010rsf.1_Silent_p.F258F	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	258	LRR 9.|Extracellular (Potential).					integral to plasma membrane					0						CCAGGTCGGGGAAATGGAGCA	0.622													52	75					0	0	0.014410	0	0
PAK1	5058	broad.mit.edu	37	11	77085397	77085397	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:77085397C>T	uc001oyh.3	-	5	986	c.453G>A	c.(451-453)GAG>GAA	p.E151E	PAK1_uc010rso.1_Silent_p.E53E|PAK1_uc001oyg.3_Silent_p.E151E|PAK1_uc001oyi.1_Silent_p.E151E	NM_002576	NP_002567	Q13153	PAK1_HUMAN	p21-activated kinase 1 isoform 2	151	Interaction with CRIPAK.				apoptosis|axon guidance|cytoskeleton organization|ER-nucleus signaling pathway|positive regulation of JUN kinase activity|positive regulation of peptidyl-serine phosphorylation|protein autophosphorylation|T cell costimulation|T cell receptor signaling pathway	cytosol|focal adhesion|Golgi apparatus	ATP binding|collagen binding|protein binding|protein serine/threonine kinase activity			skin(2)|stomach(1)|lung(1)	4	all_cancers(14;1.75e-18)					AATTGTAATCCTCAGCTGACT	0.398													19	29					0	0	0.018920	0	0
DLG2	1740	broad.mit.edu	37	11	83180405	83180405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:83180405G>A	uc001paj.2	-	20	2446	c.2143C>T	c.(2143-2145)CCA>TCA	p.P715S	DLG2_uc001pai.2_Missense_Mutation_p.P594S|DLG2_uc010rsy.1_Missense_Mutation_p.P664S|DLG2_uc010rsz.1_Missense_Mutation_p.P711S|DLG2_uc010rta.1_Missense_Mutation_p.P697S|DLG2_uc001pak.2_Missense_Mutation_p.P820S|DLG2_uc010rtb.1_Missense_Mutation_p.P682S|DLG2_uc010rsw.1_Missense_Mutation_p.P179S|DLG2_uc010rsx.1_Missense_Mutation_p.P192S	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	715	Guanylate kinase-like.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCTCGCTTTGGCCTCGTAGTA	0.378													26	34					0	0	0.024334	0	0
DLG2	1740	broad.mit.edu	37	11	83182697	83182697	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:83182697G>A	uc001paj.2	-	19	2406	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	DLG2_uc001pai.2_Silent_p.F580F|DLG2_uc010rsy.1_Silent_p.F650F|DLG2_uc010rsz.1_Silent_p.F697F|DLG2_uc010rta.1_Silent_p.F683F|DLG2_uc001pak.2_Silent_p.F806F|DLG2_uc010rtb.1_Silent_p.F668F|DLG2_uc010rsw.1_Silent_p.F165F|DLG2_uc010rsx.1_Silent_p.F178F	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	701	Guanylate kinase-like.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				ATTTATCAGGGAATTCAGATA	0.423													11	8					0	0	0.016723	0	0
TYR	7299	broad.mit.edu	37	11	88911834	88911834	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:88911834G>A	uc001pcs.2	+	1	795	c.713G>A	c.(712-714)TGG>TAG	p.W238*		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	238	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	TATTGGGACTGGCGGGATGCA	0.473									Oculocutaneous_Albinism				53	55					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92532816	92532817	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:92532816_92532817CC>TT	uc001pdj.3	+	9	6654_6655	c.6637_6638CC>TT	c.(6637-6639)CCA>TTA	p.P2213L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2213	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGCCACCAGTCCAGAAGGCCAA	0.421										TCGA Ovarian(4;0.039)			30	40					0	0	0.004672	0	0
HEPHL1	341208	broad.mit.edu	37	11	93796735	93796735	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:93796735G>A	uc001pep.2	+	3	634	c.477G>A	c.(475-477)GGG>GGA	p.G159G		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	159	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TTCCTCCTGGGAAAAACTACA	0.458													8	8					0	0	0.003080	0	0
HEPHL1	341208	broad.mit.edu	37	11	93806484	93806484	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:93806484C>T	uc001pep.2	+	8	1540	c.1383C>T	c.(1381-1383)ATC>ATT	p.I461I	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	461	Plastocyanin-like 3.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GCCCAGTCATCAAGGCAGAGG	0.438													6	10					0	0	0.001984	0	0
HEPHL1	341208	broad.mit.edu	37	11	93819200	93819200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:93819200G>A	uc001pep.2	+	11	2082	c.1925G>A	c.(1924-1926)AGA>AAA	p.R642K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	642	Plastocyanin-like 4.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AAAAGGGATAGAGTTTCCTGG	0.448													22	39					0	0	0.027356	0	0
CNTN5	53942	broad.mit.edu	37	11	100179181	100179181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:100179181G>A	uc001pga.2	+	21	3050	c.2711G>A	c.(2710-2712)GGA>GAA	p.G904E	CNTN5_uc001pfz.2_Missense_Mutation_p.G904E|CNTN5_uc001pgb.2_Missense_Mutation_p.G830E|CNTN5_uc010ruk.1_Missense_Mutation_p.G175E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	904	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GAGAGTCTAGGAAGACCACAG	0.423													5	14					0	0	0.014758	0	0
MMP12	4321	broad.mit.edu	37	11	102743833	102743833	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:102743833C>A	uc001phk.2	-	2	157	c.112G>T	c.(112-114)GAA>TAA	p.E38*		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	38					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	TAAAATTTTTCTAAGTATCTC	0.328													12	17					3.07112e-06	3.11131e-06	0.010729	1	0
EXPH5	23086	broad.mit.edu	37	11	108381909	108381909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:108381909C>T	uc001pkk.2	-	6	4436	c.4325G>A	c.(4324-4326)AGA>AAA	p.R1442K	EXPH5_uc010rvy.1_Missense_Mutation_p.R1254K|EXPH5_uc010rvz.1_Missense_Mutation_p.R1286K|EXPH5_uc010rwa.1_Missense_Mutation_p.R1366K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1442					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CCAAGAACTTCTTCTAGTTTG	0.423													30	56					0	0	0.006320	0	0
DIXDC1	85458	broad.mit.edu	37	11	111844759	111844759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:111844759G>A	uc001pml.2	+	4	626	c.329G>A	c.(328-330)GGA>GAA	p.G110E	DIXDC1_uc001pmj.2_Missense_Mutation_p.G103E|DIXDC1_uc001pmk.2_Missense_Mutation_p.G110E	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	110	CH.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		ATTGTGGATGGAAACCTGAAG	0.483													21	43					0	0	0.016522	0	0
CLDN25	644672	broad.mit.edu	37	11	113650778	113650778	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:113650778C>T	uc009yyw.1	+	1	261	c.261C>T	c.(259-261)TCC>TCT	p.S87S		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	87	Helical; (Potential).					integral to membrane|tight junction	structural molecule activity				0						TGGTAGCCTCCCATGGGCTGG	0.567													114	163					0	0	0.014410	0	0
HTR3B	9177	broad.mit.edu	37	11	113802575	113802575	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:113802575C>T	uc001pok.2	+	4	421	c.354C>T	c.(352-354)ATC>ATT	p.I118I	HTR3B_uc001pol.2_Silent_p.I107I	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	118	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CCCCCGATATCATCATCAATG	0.453													42	57					0	0	0.014410	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934125	113934125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:113934125G>A	uc001pop.2	+	2	367	c.103G>A	c.(103-105)GAT>AAT	p.D35N	ZBTB16_uc001poo.1_Missense_Mutation_p.D35N|ZBTB16_uc001poq.2_Missense_Mutation_p.D35N	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	35	BTB.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GACTTTGTGCGATGTGGTCAT	0.587													38	32					0	0	0.007835	0	0
FAM55D	54827	broad.mit.edu	37	11	114453326	114453326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:114453326C>T	uc001ppc.2	-	3	695	c.514G>A	c.(514-516)GAG>AAG	p.E172K	FAM55D_uc001ppd.2_Intron	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	172						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		ACCTGGCCCTCCCAGAACAGA	0.572													9	18					0	0	0.004482	0	0
NLRX1	79671	broad.mit.edu	37	11	119044590	119044590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:119044590C>T	uc001pvu.2	+	5	847	c.632C>T	c.(631-633)TCC>TTC	p.S211F	NLRX1_uc010rzc.1_Missense_Mutation_p.S33F|NLRX1_uc001pvv.2_Missense_Mutation_p.S211F|NLRX1_uc001pvw.2_Missense_Mutation_p.S211F|NLRX1_uc001pvx.2_Missense_Mutation_p.S211F	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	211	Required for interaction with MAVS.|NACHT.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GCCCCAGCCTCCCTGTGCCAA	0.627													44	38					0	0	0.009718	0	0
PVRL1	5818	broad.mit.edu	37	11	119510622	119510622	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:119510622G>A	uc001pwu.1	-	6	1276	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F		NM_203285	NP_976030	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 2	24					adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		GGTTGTACAGGAAGAAGACAG	0.642													23	42					0	0	0.014323	0	0
SORL1	6653	broad.mit.edu	37	11	121414296	121414296	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:121414296C>T	uc001pxx.2	+	13	1805	c.1725C>T	c.(1723-1725)ATC>ATT	p.I575I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	575	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AAACATTCATCTTCTCTGAGA	0.448													46	66					0	0	0.013114	0	0
BSX	390259	broad.mit.edu	37	11	122850164	122850164	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:122850164C>T	uc010rzs.1	-	2	264	c.264G>A	c.(262-264)GGG>GGA	p.G88G		NM_001098169	NP_001091639	Q3C1V8	BSH_HUMAN	brain specific homeobox	88											0		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0361)		GGACTGGCATCCCTGCAGAGA	0.517													28	43					0	0	0.027356	0	0
OR6M1	390261	broad.mit.edu	37	11	123676285	123676285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:123676285C>T	uc010rzz.1	-	1	773	c.773G>A	c.(772-774)AGA>AAA	p.R258K		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CTGATTGGGTCTCACATACAC	0.507													22	35					0	0	0.012319	0	0
OR10S1	219873	broad.mit.edu	37	11	123847420	123847420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:123847420C>T	uc001pzm.1	-	1	979	c.979G>A	c.(979-981)GGC>AGC	p.G327S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	327	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GGTGGGCTGCCTGCTGTAGAC	0.438													23	48					0	0	0.014323	0	0
OR10G7	390265	broad.mit.edu	37	11	123909203	123909203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:123909203C>T	uc001pzq.1	-	1	506	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CTGGTTGGGTCCACAGTAGGG	0.557													78	127					0	0	0.014410	0	0
OR8G2	26492	broad.mit.edu	37	11	124095961	124095961	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124095961C>T	uc010saf.1	+	1	564	c.564C>T	c.(562-564)AAC>AAT	p.N188N		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	188						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATGTGATTAACCATTATTTTT	0.423													123	172					0	0	0.014410	0	0
OR8B2	26595	broad.mit.edu	37	11	124252919	124252919	+	Silent	SNP	G	A	A	rs2320234	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124252919G>A	uc010sai.1	-	1	321	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CAGAGATGACGAAAAAGAGAA	0.398													19	43					0	0	0.007413	0	0
OR8A1	390275	broad.mit.edu	37	11	124440633	124440633	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124440633C>T	uc010san.1	+	1	669	c.669C>T	c.(667-669)ATC>ATT	p.I223I		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	223	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		GATTCAACATCATAGTCACGA	0.478													36	44					0	0	0.015359	0	0
VSIG2	23584	broad.mit.edu	37	11	124617446	124617446	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124617446G>A	uc001qas.2	-	7	1045	c.969C>T	c.(967-969)CTC>CTT	p.L323L		NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	323	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		CGACCATAGGGAGCTTGGACT	0.527													33	67					0	0	0.021022	0	0
C11orf61	79684	broad.mit.edu	37	11	124637140	124637140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124637140G>A	uc001qba.1	-	4	1635	c.1612C>T	c.(1612-1614)CTT>TTT	p.L538F	C11orf61_uc001qaz.1_Missense_Mutation_p.L486F|C11orf61_uc010sap.1_Missense_Mutation_p.L258F|C11orf61_uc001qay.1_Missense_Mutation_p.L308F	NM_024631	NP_078907	Q6P1R3	CK061_HUMAN	hypothetical protein LOC79684	538											0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0079)		CCTGCGGAAAGAAAATCCCTC	0.413													43	83					0	0	0.007835	0	0
ROBO3	64221	broad.mit.edu	37	11	124745128	124745128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:124745128G>A	uc001qbc.2	+	14	2387	c.2195G>A	c.(2194-2196)AGA>AAA	p.R732K	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank|ROBO3_uc001qbf.1_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	732	Fibronectin type-III 2.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		ACTGTGCTAAGAGGACTCCCT	0.587													61	62					0	0	0.014410	0	0
PKNOX2	63876	broad.mit.edu	37	11	125237848	125237849	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:125237848_125237849CC>TT	uc001qbu.2	+	5	508_509	c.194_195CC>TT	c.(193-195)GCC>GTT	p.A65V	PKNOX2_uc010saz.1_Missense_Mutation_p.A36V|PKNOX2_uc010sba.1_Missense_Mutation_p.A36V|PKNOX2_uc010sbb.1_Intron	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	65						nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		GACCCCCAGGCCCAGCTGGAGG	0.639													15	47					0	0	0.004672	0	0
STT3A	3703	broad.mit.edu	37	11	125476198	125476198	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:125476198C>T	uc001qcd.2	+	8	728	c.618C>T	c.(616-618)GTC>GTT	p.V206V	STT3A_uc009zbm.2_Silent_p.V206V|STT3A_uc001qce.2_Silent_p.V206V|STT3A_uc010sbg.1_Silent_p.V114V|STT3A_uc009zbn.2_5'UTR	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	206	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		CATCATAGGTCTCGTCATGGG	0.463													52	103					0	0	0.014410	0	0
PATE2	399967	broad.mit.edu	37	11	125647308	125647308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:125647308C>T	uc001qcu.2	-	4	357	c.311G>A	c.(310-312)AGT>AAT	p.S104N	PATE2_uc010sbj.1_Missense_Mutation_p.S61N	NM_212555	NP_997720	Q6UY27	PATE2_HUMAN	prostate and testis expressed 2 precursor	104						extracellular space					0						GCAGTAGTTACTATGATCACA	0.448													21	31					0	0	0.016522	0	0
FLI1	2313	broad.mit.edu	37	11	128680672	128680672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:128680672C>T	uc010sbu.1	+	9	1489	c.1148C>T	c.(1147-1149)TCT>TTT	p.S383F	FLI1_uc010sbt.1_Missense_Mutation_p.S190F|FLI1_uc010sbv.1_Missense_Mutation_p.S350F|FLI1_uc009zci.2_Missense_Mutation_p.S317F	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	383					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		AAGTACCCTTCTGACATCTCC	0.517			T	EWSR1	Ewing sarcoma								30	37					0	0	0.007291	0	0
KCNJ5	3762	broad.mit.edu	37	11	128786570	128786570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:128786570G>A	uc001qet.2	+	3	1518	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	KCNJ5_uc009zck.2_Missense_Mutation_p.E402K|KCNJ5_uc001qew.2_Missense_Mutation_p.E402K	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	402	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TGAGCAGAATGAAGAAGATGA	0.637													19	26					0	0	0.006122	0	0
IGSF9B	22997	broad.mit.edu	37	11	133795736	133795736	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:133795736G>A	uc001qgx.3	-	14	2163	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I	IGSF9B_uc001qgy.1_Silent_p.I486I	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	644	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TGTAGCGGTCGATGGGAAAGC	0.612													24	28					0	0	0.007291	0	0
IGSF9B	22997	broad.mit.edu	37	11	133801645	133801645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr11:133801645C>T	uc001qgx.3	-	9	1387	c.1156G>A	c.(1156-1158)GAG>AAG	p.E386K	IGSF9B_uc001qgy.1_Missense_Mutation_p.E228K	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	386	Extracellular (Potential).|Ig-like 4.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TCTGTGGCCTCCTCAATTCGA	0.587													12	22					0	0	0.010729	0	0
SLC6A13	6540	broad.mit.edu	37	12	344366	344366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:344366G>A	uc001qic.1	-	7	774	c.721C>T	c.(721-723)CCT>TCT	p.P241S	SLC6A13_uc009zdj.1_Missense_Mutation_p.P241S|SLC6A13_uc010sdl.1_Missense_Mutation_p.P149S|SLC6A13_uc010sdm.1_Missense_Mutation_p.P122S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	241	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ATGAGGTAAGGAAATGTGGCC	0.453													15	53					0	0	0.028581	0	0
B4GALNT3	283358	broad.mit.edu	37	12	659062	659062	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:659062G>A	uc001qii.1	+	10	981	c.981G>A	c.(979-981)CGG>CGA	p.R327R	B4GALNT3_uc001qij.1_Silent_p.R229R|B4GALNT3_uc001qik.1_5'Flank	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	327	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CTGACCCCCGGGACACCCTCT	0.642													14	22					0	0	0.016723	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662505	662505	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:662505C>T	uc001qii.1	+	14	1416	c.1416C>T	c.(1414-1416)CTC>CTT	p.L472L	B4GALNT3_uc001qij.1_Silent_p.L375L|B4GALNT3_uc001qik.1_Silent_p.L21L	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	472	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			ACTACCGCCTCCGAAGCCTGC	0.637													58	207					0	0	0.014410	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2016688	2016688	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:2016688G>A	uc001qjp.2	-	6	930	c.699C>T	c.(697-699)GTC>GTT	p.V233V	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.V233V	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	233	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TCTCCACGAAGACAGCATTCA	0.438													12	41					0	0	0.013537	0	0
DCP1B	196513	broad.mit.edu	37	12	2064598	2064598	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:2064598C>T	uc001qjx.1	-	6	731	c.651G>A	c.(649-651)CAG>CAA	p.Q217Q	DCP1B_uc010sdy.1_Silent_p.Q115Q	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	217					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			AACTCCGTACCTGGTTGGGCT	0.443													85	198					0	0	0.014410	0	0
CACNA1C	775	broad.mit.edu	37	12	2621981	2621981	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:2621981G>A	uc009zdu.1	+	9	1534	c.1221G>A	c.(1219-1221)GAG>GAA	p.E407E	CACNA1C_uc009zdv.1_Silent_p.E404E|CACNA1C_uc001qkb.2_Silent_p.E407E|CACNA1C_uc001qkc.2_Silent_p.E407E|CACNA1C_uc001qke.2_Silent_p.E407E|CACNA1C_uc001qkf.2_Silent_p.E407E|CACNA1C_uc001qjz.2_Silent_p.E407E|CACNA1C_uc001qkd.2_Silent_p.E407E|CACNA1C_uc001qkg.2_Silent_p.E407E|CACNA1C_uc009zdw.1_Silent_p.E407E|CACNA1C_uc001qkh.2_Silent_p.E407E|CACNA1C_uc001qkl.2_Silent_p.E407E|CACNA1C_uc001qkn.2_Silent_p.E407E|CACNA1C_uc001qko.2_Silent_p.E407E|CACNA1C_uc001qkp.2_Silent_p.E407E|CACNA1C_uc001qkr.2_Silent_p.E407E|CACNA1C_uc001qku.2_Silent_p.E407E|CACNA1C_uc001qkq.2_Silent_p.E407E|CACNA1C_uc001qks.2_Silent_p.E407E|CACNA1C_uc001qkt.2_Silent_p.E407E|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Silent_p.E143E|CACNA1C_uc001qkj.1_Silent_p.E143E|CACNA1C_uc001qkk.1_Silent_p.E143E|CACNA1C_uc001qkm.1_Silent_p.E143E|CACNA1C_uc009zdy.1_Silent_p.E32E|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	407	I.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCACCAGAGAGTTTTCCAAAG	0.562													8	22					0	0	0.003080	0	0
TEAD4	7004	broad.mit.edu	37	12	3121375	3121375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:3121375C>T	uc010sej.1	+	5	605	c.328C>T	c.(328-330)CGC>TGC	p.R110C	TEAD4_uc010sek.1_Missense_Mutation_p.R110C|TEAD4_uc001qln.2_5'UTR	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	111					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			TCGCAAAGCTCGCGAGATCCA	0.607													20	51					0	0	0.010504	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3788196	3788196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:3788196C>T	uc001qmj.2	-	6	981	c.409G>A	c.(409-411)GAA>AAA	p.E137K	EFCAB4B_uc010sen.1_Missense_Mutation_p.E137K|EFCAB4B_uc010seo.1_Missense_Mutation_p.E137K	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	137					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			ACCTTCTCTTCATGGCGCTGG	0.557													32	80					0	0	0.012213	0	0
FGF6	2251	broad.mit.edu	37	12	4553315	4553315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:4553315C>T	uc001qmr.1	-	2	478	c.434G>A	c.(433-435)GGA>GAA	p.G145E		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	145					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			GTACAATCTTCCTTTACTGTT	0.488													26	69					0	0	0.007291	0	0
ANO2	57101	broad.mit.edu	37	12	5685149	5685149	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:5685149G>A	uc001qnm.2	-	24	2544	c.2472C>T	c.(2470-2472)ATC>ATT	p.I824I		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	829	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CCAGGCGGGGGATAAAGTCGG	0.517													3	12					0	0	0.004672	0	0
ANO2	57101	broad.mit.edu	37	12	5853361	5853361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:5853361G>A	uc001qnm.2	-	12	1373	c.1301C>T	c.(1300-1302)CCT>CTT	p.P434L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	439	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GACGGTGGCAGGGTTGTCAAA	0.542													19	66					0	0	0.007413	0	0
ANO2	57101	broad.mit.edu	37	12	5860133	5860133	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:5860133C>T	uc001qnm.2	-	11	1119	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	354	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CTCCAAAATACTTTCTGGAAA	0.333													4	18					0	0	0.009096	0	0
VWF	7450	broad.mit.edu	37	12	6128845	6128845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:6128845G>A	uc001qnn.1	-	28	3989	c.3739C>T	c.(3739-3741)CCC>TCC	p.P1247S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1247					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCATCTGTGGGAGGCACCACC	0.567													19	45					0	0	0.008871	0	0
VWF	7450	broad.mit.edu	37	12	6204750	6204750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:6204750C>T	uc001qnn.1	-	6	783	c.533G>A	c.(532-534)GGG>GAG	p.G178E	VWF_uc010set.1_Missense_Mutation_p.G178E|VWF_uc001qno.1_Missense_Mutation_p.G215E	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	178	VWFD 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGTCAAGGTCCCTGTGGAGGA	0.493													41	160					0	0	0.009718	0	0
ZNF384	171017	broad.mit.edu	37	12	6782498	6782498	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:6782498G>A	uc010sfh.1	-	7	1003	c.795C>T	c.(793-795)TTC>TTT	p.F265F	ZNF384_uc001qpz.2_Silent_p.F265F|ZNF384_uc001qqa.2_Silent_p.F265F|ZNF384_uc001qqb.2_Silent_p.F249F|ZNF384_uc001qqc.2_Silent_p.F265F|ZNF384_uc001qqd.2_Silent_p.F210F|ZNF384_uc001qqe.2_Silent_p.F249F|ZNF384_uc009zew.1_Silent_p.F151F	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	265	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						AGCTGTTGGCGAAGGTCTTGG	0.547			T	EWSR1|TAF15 	ALL								26	85					0	0	0.018920	0	0
CD4	920	broad.mit.edu	37	12	6923361	6923361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:6923361G>A	uc001qqv.1	+	4	513	c.268G>A	c.(268-270)GGA>AGA	p.G90R	CD4_uc009zez.1_Missense_Mutation_p.G35R|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_5'UTR|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	90	Extracellular (Potential).|Ig-like V-type.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				TTGGGACCAAGGAAACTTTCC	0.498													42	157					0	0	0.011902	0	0
ENO2	2026	broad.mit.edu	37	12	7030875	7030875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7030875G>A	uc001qru.1	+	9	1219	c.997G>A	c.(997-999)GAA>AAA	p.E333K	ENO2_uc009zfi.1_Missense_Mutation_p.E333K|ENO2_uc010sfq.1_Missense_Mutation_p.E290K|ENO2_uc001qrv.1_Missense_Mutation_p.E333K|ATN1_uc001qrw.1_5'Flank	NM_001975	NP_001966	P09104	ENOG_HUMAN	enolase 2	333					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex|plasma membrane	magnesium ion binding|phosphopyruvate hydratase activity				0						GCGGGCAGTGGAAGAAAAGGC	0.547													38	89					0	0	0.025465	0	0
CLSTN3	9746	broad.mit.edu	37	12	7303615	7303615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7303615C>T	uc001qsr.2	+	16	2761	c.2483C>T	c.(2482-2484)CCT>CTT	p.P828L	CLSTN3_uc001qss.2_Missense_Mutation_p.P840L	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	828	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						CAGCCCCCGCCTGAGATGGCT	0.642													16	35					0	0	0.024245	0	0
CD163L1	283316	broad.mit.edu	37	12	7528404	7528404	+	Missense_Mutation	SNP	C	T	T	rs150856487	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7528404C>T	uc001qsy.2	-	10	2604	c.2578G>A	c.(2578-2580)GAA>AAA	p.E860K	CD163L1_uc010sge.1_Missense_Mutation_p.E870K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	860	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGGAACTTTTCGGCCCAAGTT	0.458													31	128					0	0	0.009535	0	0
CD163L1	283316	broad.mit.edu	37	12	7531787	7531787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7531787C>T	uc001qsy.2	-	9	2184	c.2158G>A	c.(2158-2160)GGA>AGA	p.G720R	CD163L1_uc010sge.1_Missense_Mutation_p.G730R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	720	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ATGTTCATTCCCCAGCCATTA	0.493													28	93					0	0	0.009535	0	0
CD163	9332	broad.mit.edu	37	12	7633767	7633767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7633767C>T	uc001qsz.3	-	15	3461	c.3333G>A	c.(3331-3333)ATG>ATA	p.M1111I	CD163_uc001qta.3_Missense_Mutation_p.M1111I|CD163_uc009zfw.2_Missense_Mutation_p.M1144I	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1111	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTGAGGAATTCATTAGGTCCA	0.448													23	66					0	0	0.018920	0	0
CD163	9332	broad.mit.edu	37	12	7639526	7639526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7639526G>A	uc001qsz.3	-	9	2235	c.2107C>T	c.(2107-2109)CCT>TCT	p.P703S	CD163_uc001qta.3_Missense_Mutation_p.P703S|CD163_uc009zfw.2_Missense_Mutation_p.P736S	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	703	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GGAATGGTAGGCCTTGTTGGG	0.413													22	49					0	0	0.024334	0	0
CD163	9332	broad.mit.edu	37	12	7649613	7649613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:7649613C>T	uc001qsz.3	-	5	1023	c.895G>A	c.(895-897)GAT>AAT	p.D299N	CD163_uc001qta.3_Missense_Mutation_p.D299N|CD163_uc009zfw.2_Missense_Mutation_p.D299N	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	299	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ACAGCAGCATCGTAACTGTCC	0.502													30	47					0	0	0.007291	0	0
Unknown	0	broad.mit.edu	37	12	8050890	8050890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:8050890G>A	uc001qtp.1	+	3	353	c.273G>A	c.(271-273)ATG>ATA	p.M91I	uc001qtq.1_5'Flank					RecName: Full=Putative homeobox protein NANOG2;																		accagagaatgaaatctaaga	0.114													16	33					0	0	0.006122	0	0
CLEC6A	93978	broad.mit.edu	37	12	8630024	8630024	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:8630024G>A	uc001qum.1	+	6	711	c.594G>A	c.(592-594)AGG>AGA	p.R198R		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	198	Extracellular (Potential).|C-type lectin.				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					AAACTAGAAGGAATTCAATAT	0.378													13	47					0	0	0.016723	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687268	8687268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:8687268C>T	uc001quo.1	-	6	791	c.626G>A	c.(625-627)GGA>GAA	p.G209E		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	209	Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					AGGATTTATTCCTACCATTTC	0.423													28	74					0	0	0.007291	0	0
CLEC4E	26253	broad.mit.edu	37	12	8688801	8688801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:8688801C>T	uc001quo.1	-	5	538	c.373G>A	c.(373-375)GAA>AAA	p.E125K		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	125	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					GAAAGGAATTCCTATGGAAGA	0.363													27	57					0	0	0.021523	0	0
STYK1	55359	broad.mit.edu	37	12	10787204	10787204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:10787204C>T	uc001qys.2	-	3	535	c.14G>A	c.(13-15)CGG>CAG	p.R5Q		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	5						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CAGGAGCATCCGTGTCATGCC	0.488										HNSCC(73;0.22)			14	71					0	0	0.028581	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612													4	25					0	0	0.009096	0	0
ATF7IP	55729	broad.mit.edu	37	12	14650954	14650954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:14650954C>T	uc001rbw.2	+	15	3918	c.3760C>T	c.(3760-3762)CCT>TCT	p.P1254S	ATF7IP_uc001rbx.2_Missense_Mutation_p.P1253S|ATF7IP_uc001rby.3_Missense_Mutation_p.P1254S|ATF7IP_uc001rca.2_Missense_Mutation_p.P1254S	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	1254	Interaction with MBD1.|Fibronectin type-III.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						ACGTTTTGGGCCTTTCTGTGA	0.433													57	240					0	0	0.014410	0	0
GUCY2C	2984	broad.mit.edu	37	12	14778764	14778764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:14778764C>T	uc001rcd.2	-	21	2472	c.2335G>A	c.(2335-2337)GTA>ATA	p.V779I		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	779	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CTTTCCTCTACCAGATGTTCC	0.438													42	95					0	0	0.013114	0	0
GUCY2C	2984	broad.mit.edu	37	12	14832636	14832636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:14832636C>T	uc001rcd.2	-	6	922	c.785G>A	c.(784-786)CGA>CAA	p.R262Q	GUCY2C_uc009zhz.2_Missense_Mutation_p.R262Q	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	262	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGCCACTGCTCGGTCACCCTT	0.418													25	81					0	0	0.010818	0	0
PTPRO	5800	broad.mit.edu	37	12	15713206	15713206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:15713206C>T	uc001rcv.1	+	17	2881	c.2707C>T	c.(2707-2709)CCT>TCT	p.P903S	PTPRO_uc001rcw.1_Intron|PTPRO_uc001rcx.1_Missense_Mutation_p.P92S|PTPRO_uc001rcy.1_Missense_Mutation_p.P92S|PTPRO_uc001rcz.1_Intron|PTPRO_uc001rda.1_Intron	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	903	Cytoplasmic (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TTATATTAATCCTTGGTAAGT	0.303													14	43					0	0	0.016723	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028248	21028248	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21028248C>T	uc001rek.2	+	8	933	c.807C>T	c.(805-807)TCC>TCT	p.S269S	SLCO1B3_uc001rel.2_Silent_p.S269S|SLCO1B3_uc010sil.1_Silent_p.S269S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.S94S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	269	Helical; Name=6; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GACTATTTTCCATTATTTCTT	0.363													39	121					0	0	0.021022	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172237	21172237	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21172237G>A	uc010sin.1	+	2	141	c.141G>A	c.(139-141)CCG>CCA	p.P47P	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	47						membrane	transporter activity				0						TACACAGACCGAAGTTAATTG	0.328													16	35					0	0	0.024245	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21175919	21175919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21175919C>T	uc010sin.1	+	4	476	c.476C>T	c.(475-477)TCC>TTC	p.S159F	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.S206F	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	159						membrane	transporter activity				0						GGACATTCTTCCTTGTATTTA	0.328													12	40					0	0	0.010729	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205142	21205142	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21205142C>T	uc010sin.1	+	9	1303	c.1303C>T	c.(1303-1305)CTG>TTG	p.L435L	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Silent_p.L482L	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	435						membrane	transporter activity				0						AATAACTTACCTGTCACCTTG	0.378													9	38					0	0	0.004482	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918790	21918790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21918790C>T	uc001rff.2	-	3	1480	c.1142G>A	c.(1141-1143)AGG>AAG	p.R381K		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	381	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	GTTGCGCTTCCTCAGAGAATT	0.458													42	130					0	0	0.008740	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918844	21918844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21918844G>A	uc001rff.2	-	3	1426	c.1088C>T	c.(1087-1089)TCC>TTC	p.S363F		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	363	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	AATAAGGATGGAAGGTTTCTC	0.453													39	121					0	0	0.025465	0	0
KCNJ8	3764	broad.mit.edu	37	12	21926205	21926205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21926205C>T	uc001rff.2	-	2	684	c.346G>A	c.(346-348)GAG>AAG	p.E116K		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	116	Extracellular (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	ACAGTGGACTCCAAACCACTT	0.463													82	191					0	0	0.014410	0	0
ABCC9	10060	broad.mit.edu	37	12	21960358	21960358	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21960358A>T	uc001rfi.1	-	36	4391	c.4371T>A	c.(4369-4371)TTT>TTA	p.F1457L	ABCC9_uc001rfh.2_Missense_Mutation_p.F1457L|ABCC9_uc001rfj.1_Missense_Mutation_p.F1421L|ABCC9_uc001rfg.2_Translation_Start_Site	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1457	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TGGCAAGGCAAAATAGCTGTC	0.438													16	55					0	0	0.028581	0	0
ABCC9	10060	broad.mit.edu	37	12	21995392	21995392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21995392G>A	uc001rfi.1	-	27	3349	c.3329C>T	c.(3328-3330)ACC>ATC	p.T1110I	ABCC9_uc001rfh.2_Missense_Mutation_p.T1110I|ABCC9_uc001rfj.1_Missense_Mutation_p.T1074I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1110	ABC transmembrane type-1 2.|Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGATTCCAAGGTTGGAGGGAT	0.418													19	82					0	0	0.008871	0	0
ABCC9	10060	broad.mit.edu	37	12	21997802	21997802	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:21997802G>A	uc001rfi.1	-	25	3164	c.3144C>T	c.(3142-3144)TTC>TTT	p.F1048F	ABCC9_uc001rfh.2_Silent_p.F1048F|ABCC9_uc001rfj.1_Silent_p.F1012F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1048	Helical; Name=13; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAAGGCAAAGGAAAATGCCTG	0.408													10	40					0	0	0.006214	0	0
ETNK1	55500	broad.mit.edu	37	12	22811976	22811976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:22811976C>T	uc001rft.2	+	3	734	c.712C>T	c.(712-714)CAT>TAT	p.H238Y	ETNK1_uc009ziz.2_Missense_Mutation_p.H238Y	NM_018638	NP_061108	Q9HBU6	EKI1_HUMAN	ethanolamine kinase 1 isoform A	238				RLIARQLAKIHAIHAHNGWIPKSNLWLKMGK -> SLSSLT LCKGKTTRCFGLTGCRGSRLLLSFF (in Ref. 2; AAH06111).	phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|ethanolamine kinase activity				0						TGCTAAAATCCATGCTATTCA	0.358													14	42					0	0	0.028581	0	0
ETNK1	55500	broad.mit.edu	37	12	22812064	22812064	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:22812064T>G	uc001rft.2	+	3	822	c.800T>G	c.(799-801)TTT>TGT	p.F267C	ETNK1_uc009ziz.2_Missense_Mutation_p.F267C	NM_018638	NP_061108	Q9HBU6	EKI1_HUMAN	ethanolamine kinase 1 isoform A	267					phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|ethanolamine kinase activity				0						CCCACAGGATTTGCAGATGAA	0.328													10	51					0	0	0.008291	0	0
C12orf77	196415	broad.mit.edu	37	12	25148891	25148891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:25148891G>A	uc001rgf.2	-	3	462	c.257C>T	c.(256-258)CCC>CTC	p.P86L		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	86											0						GTGGCATTCGGGGGCAGGTAC	0.517													18	37					0	0	0.007413	0	0
CASC1	55259	broad.mit.edu	37	12	25261710	25261710	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:25261710G>A	uc001rgl.2	-	15	2005	c.1923C>T	c.(1921-1923)GCC>GCT	p.A641A	CASC1_uc001rgk.2_Silent_p.A647A|CASC1_uc001rgm.3_Intron|CASC1_uc001rgj.2_Silent_p.A601A|CASC1_uc010sje.1_Silent_p.A582A|CASC1_uc010sjf.1_Intron	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	641										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			ACATTAAAAGGGCCCAATTAG	0.358													15	41					0	0	0.028581	0	0
ITPR2	3709	broad.mit.edu	37	12	26572051	26572051	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:26572051G>A	uc001rhg.2	-	50	7458	c.7041C>T	c.(7039-7041)CTC>CTT	p.L2347L	ITPR2_uc009zjg.1_Silent_p.L498L	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2347	Extracellular (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CCACGTGATAGAGAAAGGCCA	0.448													15	46					0	0	0.004990	0	0
IPO8	10526	broad.mit.edu	37	12	30790024	30790024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:30790024G>A	uc001rjd.2	-	22	2757	c.2587C>T	c.(2587-2589)CCC>TCC	p.P863S	IPO8_uc001rje.1_Missense_Mutation_p.P352S|IPO8_uc010sjt.1_Missense_Mutation_p.P658S	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	863					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					AGAATTGAGGGAACAATCTGT	0.448													32	74					0	0	0.010818	0	0
Unknown	0	broad.mit.edu	37	12	31301831	31301831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:31301831C>T	uc010sjy.1	-	10	1121	c.1121G>A	c.(1120-1122)GGA>GAA	p.G374E						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AGTATAATTTCCTATAAATTC	0.343													4	15					0	0	0.009096	0	0
H3F3C	440093	broad.mit.edu	37	12	31944699	31944699	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:31944699T>A	uc001rkr.2	-	1	477	c.402A>T	c.(400-402)AGA>AGT	p.R134S		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	134					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCACTTAAGCTCTCTCTCCCC	0.408										HNSCC(67;0.2)			45	189					0	0	0.014410	0	0
BICD1	636	broad.mit.edu	37	12	32487577	32487577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:32487577C>T	uc001rku.2	+	6	2309	c.2228C>T	c.(2227-2229)TCC>TTC	p.S743F	BICD1_uc001rkv.2_Missense_Mutation_p.S743F|BICD1_uc010skd.1_RNA|BICD1_uc001rkw.1_Missense_Mutation_p.S25F	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	743	Potential.|Interacts with RAB6A.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			ACCTTCTCATCCCTGAGAGCA	0.408													49	134					0	0	0.014410	0	0
BICD1	636	broad.mit.edu	37	12	32491742	32491742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:32491742G>A	uc001rku.2	+	8	2674	c.2593G>A	c.(2593-2595)GAT>AAT	p.D865N	BICD1_uc001rkv.2_Intron|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	865					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			TTCCCTTTGTGATCAGAGCCG	0.428													74	158					0	0	0.014410	0	0
SYT10	341359	broad.mit.edu	37	12	33559866	33559866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:33559866C>T	uc001rll.1	-	3	1232	c.935G>A	c.(934-936)CGA>CAA	p.R312Q	SYT10_uc009zju.1_Missense_Mutation_p.R122Q	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	312	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					ATGTAGTTTTCGGTTGCTTAG	0.353													21	60					0	0	0.014323	0	0
ABCD2	225	broad.mit.edu	37	12	39947731	39947731	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:39947731C>A	uc001rmb.2	-	10	2632	c.2206G>T	c.(2206-2208)GAA>TAA	p.E736*		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	736					fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						GTCTCATCTTCATTTTTAATT	0.318													4	15					0.00024832	0.000251111	0.009096	1	0
C12orf40	283461	broad.mit.edu	37	12	40037717	40037717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:40037717C>T	uc001rmc.2	+	3	367	c.200C>T	c.(199-201)CCT>CTT	p.P67L	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	67										ovary(6)	6						AAGAAAATTCCTGGTAAGTCA	0.323													11	40					0	0	0.016723	0	0
LRRK2	120892	broad.mit.edu	37	12	40692934	40692934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:40692934C>T	uc001rmg.3	+	25	3492	c.3371C>T	c.(3370-3372)TCC>TTC	p.S1124F	LRRK2_uc001rmh.1_Missense_Mutation_p.S746F|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1124	LRR 6.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GGGATATGCTCCCCCTTGAGA	0.328													22	76					0	0	0.016522	0	0
LRRK2	120892	broad.mit.edu	37	12	40745496	40745496	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:40745496C>T	uc001rmg.3	+	44	6658	c.6537C>T	c.(6535-6537)CTC>CTT	p.L2179L	LRRK2_uc009zjw.2_Silent_p.L1017L|LRRK2_uc001rmi.2_Silent_p.L1012L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	2179					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GAGGACAGCTCTCATTTCTTG	0.388													19	62					0	0	0.014323	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43822170	43822170	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:43822170G>A	uc010skx.1	-	26	3819	c.3819C>T	c.(3817-3819)TCC>TCT	p.S1273S	ADAMTS20_uc001rno.1_Silent_p.S391S|ADAMTS20_uc001rnp.1_Silent_p.S427S	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1273						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GCTGCACAGGGGAACTAGGAA	0.458													16	46					0	0	0.008871	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43847842	43847842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:43847842C>T	uc010skx.1	-	12	1628	c.1628G>A	c.(1627-1629)GGG>GAG	p.G543E		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	543	Disintegrin.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TACACATAGCCCATGACGGCA	0.373													4	19					0	0	0.009096	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43860513	43860513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:43860513G>A	uc010skx.1	-	9	1309	c.1309C>T	c.(1309-1311)CAC>TAC	p.H437Y		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	437	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GGACTCATGTGAAAACTTAAA	0.308													22	80					0	0	0.018920	0	0
PUS7L	83448	broad.mit.edu	37	12	44124202	44124202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:44124202C>T	uc001rnq.3	-	9	2572	c.2083G>A	c.(2083-2085)GAA>AAA	p.E695K	PUS7L_uc001rnr.3_Missense_Mutation_p.E695K|PUS7L_uc001rns.3_Missense_Mutation_p.E695K|PUS7L_uc009zkb.2_Missense_Mutation_p.E382K	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	695					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		TTCATTATTTCCTTCAGACAA	0.333													14	40					0	0	0.016723	0	0
TWF1	5756	broad.mit.edu	37	12	44193204	44193204	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:44193204A>T	uc001rob.2	-	5	610	c.582T>A	c.(580-582)AAT>AAA	p.N194K	TWF1_uc001rnz.2_Missense_Mutation_p.N62K|TWF1_uc001roa.2_Missense_Mutation_p.N194K|TWF1_uc001roc.2_Missense_Mutation_p.N62K	NM_002822	NP_002813	Q12792	TWF1_HUMAN	twinfilin 1	160						actin cytoskeleton|cytoplasm	actin binding|protein tyrosine kinase activity			stomach(1)	1	all_cancers(12;0.00125)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.0474)		AACTTACCTCATTGATTTTAA	0.333													6	27					0	0	0.003080	0	0
NELL2	4753	broad.mit.edu	37	12	44915951	44915951	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:44915951G>A	uc001rog.2	-	18	2602	c.2007C>T	c.(2005-2007)TTC>TTT	p.F669F	NELL2_uc001rof.3_Silent_p.F668F|NELL2_uc001roh.2_Silent_p.F669F|NELL2_uc009zkd.2_Silent_p.F621F|NELL2_uc010skz.1_Silent_p.F719F|NELL2_uc010sla.1_Silent_p.F692F	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	669	VWFC 3.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		GACACATAACGAATCCATTCT	0.368													17	47					0	0	0.007413	0	0
DBX2	440097	broad.mit.edu	37	12	45417530	45417530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:45417530C>T	uc001rok.1	-	3	819	c.647G>A	c.(646-648)CGA>CAA	p.R216Q		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	216	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		AAGTTTCTTTCGGTCTGTTTT	0.373													78	306					0	0	0.014410	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458594	45458594	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:45458594C>T	uc001rol.2	-	1		c.601G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TAGAGCACCTCTTTTCTCTCT	0.463													10	23					0	0	0.006214	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459056	45459056	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:45459056C>T	uc001rol.2	-	1		c.139G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AATTGGAGTTCGTTTCCTTCC	0.443													12	32					0	0	0.010729	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591825	46591825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:46591825C>T	uc001rpa.2	-	15	1399	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	SLC38A1_uc001rpb.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpc.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpd.2_Missense_Mutation_p.E381K|SLC38A1_uc001rpe.2_Missense_Mutation_p.E381K|SLC38A1_uc009zkj.1_Missense_Mutation_p.E381K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	381	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TTAGCCAGTTCAAATAAAGAT	0.368													17	43					0	0	0.004990	0	0
SLC38A4	55089	broad.mit.edu	37	12	47182399	47182399	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:47182399T>C	uc001rpi.2	-	4	521	c.122A>G	c.(121-123)CAA>CGA	p.Q41R	SLC38A4_uc001rpj.2_Missense_Mutation_p.Q41R|SLC38A4_uc009zkl.2_Missense_Mutation_p.Q41R	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	41	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					ATTAGCAAATTGACTGAACAC	0.353													29	61					0	0	0.009535	0	0
FAM113B	91523	broad.mit.edu	37	12	47629093	47629093	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:47629093C>G	uc001rpn.2	+	4	978	c.247C>G	c.(247-249)CGC>GGC	p.R83G	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Missense_Mutation_p.R83G	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	83							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CCGCGAGTTCCGCTCCGACCA	0.597													45	154					0	0	0.013114	0	0
COL2A1	1280	broad.mit.edu	37	12	48393853	48393853	+	Nonsense_Mutation	SNP	C	T	T	rs121912896		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:48393853C>T	uc001rqu.2	-	2	322	c.141G>A	c.(139-141)TGG>TGA	p.W47*	COL2A1_uc001rqv.2_Intron	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	47	VWFC.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GCTCCGGCTTCCACACATCCT	0.473													28	66					0	0	0.009535	0	0
LALBA	3906	broad.mit.edu	37	12	48962901	48962901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:48962901G>A	uc001rrt.2	-	2	282	c.256C>T	c.(256-258)CCT>TCT	p.P86S		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	86					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						CTTGACTGAGGGACCTGGCTG	0.463													31	102					0	0	0.012213	0	0
MLL2	8085	broad.mit.edu	37	12	49424442	49424442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:49424442G>A	uc001rta.3	-	41	13781	c.13781C>T	c.(13780-13782)GCC>GTC	p.A4594V		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4594					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ACTTCCAAAGGCCCCCCTCAG	0.547			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			27	54					0	0	0.024334	0	0
MLL2	8085	broad.mit.edu	37	12	49424543	49424543	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:49424543G>A	uc001rta.3	-	41	13680	c.13680C>T	c.(13678-13680)TCC>TCT	p.S4560S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4560					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGGCAGCAGGGACAGCTCCT	0.592			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			41	114					0	0	0.014410	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50189510	50189510	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:50189510G>A	uc009zlk.2	-	8	2335	c.2133C>T	c.(2131-2133)TCC>TCT	p.S711S	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_Silent_p.S304S	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	707										central_nervous_system(1)	1						GCCTGTGGATGGAGGGCACCA	0.632													4	22					0	0	0.009096	0	0
FAIM2	23017	broad.mit.edu	37	12	50284486	50284486	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:50284486G>A	uc001rvj.1	-	7	650	c.505C>T	c.(505-507)CTG>TTG	p.L169L	FAIM2_uc001rvi.1_Silent_p.L123L|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	169	Helical; (Potential).				anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						AGGAGAATCAGGTTCCAGGGG	0.592													29	127					0	0	0.013726	0	0
AQP6	363	broad.mit.edu	37	12	50369372	50369372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:50369372G>A	uc001rvr.1	+	4	1104	c.767G>A	c.(766-768)GGG>GAG	p.G256E	AQP6_uc001rvp.1_Missense_Mutation_p.G82E|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	256	Cytoplasmic (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						GTAGAGGTGGGGACAGGGGCA	0.652													42	116					0	0	0.025465	0	0
BIN2	51411	broad.mit.edu	37	12	51685437	51685437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:51685437C>T	uc001ryg.2	-	10	1505	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	BIN2_uc009zlz.2_Missense_Mutation_p.E453K|BIN2_uc001ryh.2_Missense_Mutation_p.E361K|BIN2_uc010sng.1_Missense_Mutation_p.E459K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	485						cytoplasm	protein binding			ovary(1)	1						TGGATGTTTTCATTTTCTTTG	0.443													25	57					0	0	0.021523	0	0
GALNT6	11226	broad.mit.edu	37	12	51751178	51751178	+	Silent	SNP	C	T	T	rs148799204		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:51751178C>T	uc001ryk.2	-	9	1782	c.1557G>A	c.(1555-1557)GGG>GGA	p.G519G	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.G519G|GALNT6_uc001ryj.1_Silent_p.G84G	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	519	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						TGAGGGGCTTCCCCCCGCGGT	0.602													37	70					0	0	0.010771	0	0
ACVRL1	94	broad.mit.edu	37	12	52309284	52309284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52309284G>A	uc001rzj.2	+	7	1331	c.1048G>A	c.(1048-1050)GGC>AGC	p.G350S	ACVRL1_uc001rzk.2_Missense_Mutation_p.G350S|ACVRL1_uc010snm.1_Missense_Mutation_p.G176S	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	350	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CGCCGACCTGGGTGAGCCGGG	0.622									Hereditary_Hemorrhagic_Telangiectasia				15	36					0	0	0.024245	0	0
NR4A1	3164	broad.mit.edu	37	12	52451274	52451274	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52451274C>T	uc001rzs.2	+	7	1814	c.1500C>T	c.(1498-1500)GTC>GTT	p.V500V	NR4A1_uc010sno.1_Silent_p.V513V|NR4A1_uc001rzt.2_Silent_p.V500V|NR4A1_uc009zmc.2_Missense_Mutation_p.S114F	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	500					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		TTGTCGATGTCCCTGCCTTCG	0.612													29	72					0	0	0.012213	0	0
KRT75	9119	broad.mit.edu	37	12	52827812	52827812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52827812C>T	uc001saj.2	-	1	299	c.277G>A	c.(277-279)GGA>AGA	p.G93R		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	93	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		CTGTTGACTCCAAACCTGTTG	0.617													48	125					0	0	0.014410	0	0
KRT75	9119	broad.mit.edu	37	12	52827960	52827961	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52827960_52827961CC>TT	uc001saj.2	-	1	150_151	c.128_129GG>AA	c.(127-129)GGG>GAA	p.G43E		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	43	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GGCCCCCACTCCCTGCTGCAGA	0.673													31	95					0	0	0.004672	0	0
KRT6C	286887	broad.mit.edu	37	12	52863587	52863587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52863587C>T	uc001sal.3	-	7	1339	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	431	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		AGGGCATCCTCCAGCCCTTCC	0.597													40	91					0	0	0.009718	0	0
KRT5	3852	broad.mit.edu	37	12	52908780	52908780	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52908780G>A	uc001san.2	-	9	1882	c.1719C>T	c.(1717-1719)TCC>TCT	p.S573S		NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	573	Tail.|Ser-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATTTGACGCTGGAGCTGCTAC	0.602													37	86					0	0	0.023175	0	0
KRT5	3852	broad.mit.edu	37	12	52911738	52911738	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52911738C>T	uc001san.2	-	4	1033	c.870G>A	c.(868-870)GAG>GAA	p.E290E	KRT5_uc009zmh.2_Silent_p.E290E	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	290	Rod.|Coil 1B.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CAACCTTGGCCTCCAGCTCCA	0.458													68	197					0	0	0.014410	0	0
KRT71	112802	broad.mit.edu	37	12	52943127	52943127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:52943127C>T	uc001sao.2	-	3	737	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	223	Coil 1B.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		TTGTTGATTTCCTCCTCATAC	0.572													54	220					0	0	0.014410	0	0
KRT2	3849	broad.mit.edu	37	12	53038983	53038983	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:53038983C>T	uc001sat.2	-	9	1773	c.1740G>A	c.(1738-1740)AAG>AAA	p.K580K		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	580	Tail.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TGGACCCTCCCTTAGAGCCAC	0.577													131	336					0	0	0.014410	0	0
KRT3	3850	broad.mit.edu	37	12	53189737	53189737	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:53189737G>A	uc001say.2	-	1	156	c.90C>T	c.(88-90)AGC>AGT	p.S30S		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	30	Gly-rich.|Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						GGGCCACACAGCTCATCCTGC	0.647													38	100					0	0	0.017118	0	0
KRT4	3851	broad.mit.edu	37	12	53200993	53200993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:53200993C>T	uc001saz.2	-	9	1916	c.1645G>A	c.(1645-1647)GGA>AGA	p.G549R		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	475						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						CTTCCTAATCCTCCGCTGATG	0.572													28	57					0	0	0.027356	0	0
KRT4	3851	broad.mit.edu	37	12	53207631	53207631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:53207631C>T	uc001saz.2	-	1	705	c.434G>A	c.(433-435)GGT>GAT	p.G145D		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	71						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						AAAGCAGGCACCTTGTCGTGA	0.602													86	238					0	0	0.014410	0	0
KRT78	196374	broad.mit.edu	37	12	53237949	53237949	+	Silent	SNP	C	T	T	rs140207612		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:53237949C>T	uc001sbc.1	-	6	1039	c.975G>A	c.(973-975)ACG>ACA	p.T325T		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	325	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TCTGGACTTTCGTTTCCTGCA	0.532													95	249					0	0	0.014410	0	0
PDE1B	5153	broad.mit.edu	37	12	54969363	54969364	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:54969363_54969364CC>AT	uc001sgd.1	+	12	1380_1381	c.1214_1215CC>AT	c.(1213-1215)CCC>CAT	p.P405H	PDE1B_uc010soz.1_Missense_Mutation_p.P268H|PDE1B_uc010spa.1_Missense_Mutation_p.P364H|PDE1B_uc001sgf.2_Missense_Mutation_p.P268H|PDE1B_uc001sge.2_Missense_Mutation_p.P385H|PDE1B_uc009znq.2_Missense_Mutation_p.P201H	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	405	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TTGGGCCTGCCCTTTTCTCCAC	0.569													49	174					0	0	0.004672	0	0
LACRT	90070	broad.mit.edu	37	12	55026969	55026969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:55026969C>T	uc001sgi.1	-	2	145	c.107G>A	c.(106-108)GGG>GAG	p.G36E		NM_033277	NP_150593	Q9GZZ8	LACRT_HUMAN	lacritin precursor	36					calcineurin-NFAT signaling pathway|positive regulation of epithelial cell proliferation|positive regulation of NFAT protein import into nucleus|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of secretion|protein localization in Golgi apparatus|tear secretion	extracellular region|stored secretory granule	collagen binding|fibronectin binding|glycoprotein binding|growth factor activity|laminin-1 binding|protein N-terminus binding	p.G36G(1)		central_nervous_system(1)	1						CTCACAGGTCCCAGCTTCCTG	0.582													66	217					0	0	0.014410	0	0
OR6C1	390321	broad.mit.edu	37	12	55714733	55714733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:55714733C>T	uc010spi.1	+	1	350	c.350C>T	c.(349-351)TCC>TTC	p.S117F		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						GCTGCCATGTCCTATGACCGC	0.408													11	26					0	0	0.008291	0	0
OR6C1	390321	broad.mit.edu	37	12	55715093	55715093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:55715093C>T	uc010spi.1	+	1	710	c.710C>T	c.(709-711)TCC>TTC	p.S237F		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						AAGGCCTTTTCCACATGTTCT	0.378													30	67					0	0	0.007291	0	0
OR6C3	254786	broad.mit.edu	37	12	55725661	55725661	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:55725661C>T	uc010spj.1	+	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTATTTCTTCCTCCGGAACT	0.383													37	127					0	0	0.007835	0	0
OR6C70	390327	broad.mit.edu	37	12	55863714	55863714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:55863714G>A	uc010spn.1	-	1	209	c.209C>T	c.(208-210)TCA>TTA	p.S70L		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGTTGTGAATGAAATTTCCAG	0.388													23	59					0	0	0.016522	0	0
ITGA7	3679	broad.mit.edu	37	12	56090706	56090706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:56090706C>T	uc001shh.2	-	12	1946	c.1726G>A	c.(1726-1728)GGA>AGA	p.G576R	ITGA7_uc001shg.2_Missense_Mutation_p.G572R|ITGA7_uc010sps.1_Missense_Mutation_p.G479R|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.G453R	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	616	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						ATGGCGTCTCCACAGACTCGG	0.572													21	60					0	0	0.018920	0	0
IKZF4	64375	broad.mit.edu	37	12	56428559	56428559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:56428559C>T	uc001sjb.1	+	9	1361	c.1202C>T	c.(1201-1203)TCT>TTT	p.S401F	IKZF4_uc010sqa.1_Missense_Mutation_p.S354F|IKZF4_uc001sjc.1_Missense_Mutation_p.S401F|IKZF4_uc001sjd.1_Missense_Mutation_p.S299F|IKZF4_uc009zoi.1_Missense_Mutation_p.S356F|IKZF4_uc001sje.1_Missense_Mutation_p.S360F	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	401					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GTCATCAGCTCTGTCTACACC	0.607													29	101					0	0	0.008361	0	0
CNPY2	10330	broad.mit.edu	37	12	56708936	56708936	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:56708936C>T	uc001sku.1	-	2	607	c.66G>A	c.(64-66)AGG>AGA	p.R22R	CNPY2_uc001skv.2_Silent_p.R22R	NM_014255	NP_055070	Q9Y2B0	CNPY2_HUMAN	canopy 2 homolog precursor	22						endoplasmic reticulum|integral to plasma membrane	protein binding				0						GATCCTGGCTCCTCCGAGCCC	0.597													44	111					0	0	0.014410	0	0
BAZ2A	11176	broad.mit.edu	37	12	56998046	56998046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:56998046G>A	uc001slq.1	-	16	3193	c.2999C>T	c.(2998-3000)TCC>TTC	p.S1000F	BAZ2A_uc001slp.1_Missense_Mutation_p.S998F|BAZ2A_uc001slo.1_5'Flank|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Missense_Mutation_p.S968F	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1000					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						CCTGTAGCTGGACATACTCTC	0.522													7	21					0	0	0.006214	0	0
RDH16	8608	broad.mit.edu	37	12	57348914	57348915	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57348914_57348915GG>AA	uc001smi.3	-	2	519_520	c.347_348CC>TT	c.(346-348)TCC>TTT	p.S116F	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	116	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						CCGTGGGCAAGGAGATGCCAGC	0.554													15	52					0	0	0.004672	0	0
MYO1A	4640	broad.mit.edu	37	12	57430834	57430834	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57430834C>T	uc001smw.3	-	20	2340	c.2097G>A	c.(2095-2097)CAG>CAA	p.Q699Q	MYO1A_uc010sqz.1_Silent_p.Q537Q|MYO1A_uc009zpd.2_Silent_p.Q699Q	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	699	IQ 1.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GTGTGGCCAGCTGCTGGAGTC	0.567													43	132					0	0	0.009718	0	0
MYO1A	4640	broad.mit.edu	37	12	57442065	57442065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57442065G>A	uc001smw.3	-	2	286	c.43C>T	c.(43-45)CTC>TTC	p.L15F	MYO1A_uc010sqz.1_5'Flank|MYO1A_uc009zpd.2_Missense_Mutation_p.L15F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	15	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGTTCCAGGAGGACAAGATCC	0.522													17	42					0	0	0.006122	0	0
LRP1	4035	broad.mit.edu	37	12	57561243	57561243	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57561243C>T	uc001snd.2	+	19	3397	c.2931C>T	c.(2929-2931)TTC>TTT	p.F977F	LRP1_uc009zph.1_RNA|LRP1_uc009zpi.1_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	977	Extracellular (Potential).|LDL-receptor class A 6.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCACCTGCTTCCCCCTGACTC	0.522													54	138					0	0	0.014410	0	0
LRP1	4035	broad.mit.edu	37	12	57572248	57572248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57572248G>A	uc001snd.2	+	27	4934	c.4468G>A	c.(4468-4470)GAG>AAG	p.E1490K		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1490	Extracellular (Potential).|LDL-receptor class B 11.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GTACGGGGGGGAGGTCTACTG	0.592													36	130					0	0	0.019004	0	0
INHBC	3626	broad.mit.edu	37	12	57843707	57843707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57843707G>A	uc001snv.1	+	2	1088	c.961G>A	c.(961-963)GCC>ACC	p.A321T		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	321					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TGTACCCACGGCCCGGCGCCC	0.562													42	114					0	0	0.025465	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57872935	57872935	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:57872935C>T	uc001sod.2	-	5	661	c.468G>A	c.(466-468)GAG>GAA	p.E156E	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Silent_p.E85E|ARHGAP9_uc001soc.2_Silent_p.E85E|ARHGAP9_uc001soe.1_Silent_p.E164E|ARHGAP9_uc010sro.1_Silent_p.E85E	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	85	SH3.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			GGATGGATTCCTCTATCATAT	0.557													73	176					0	0	0.014410	0	0
DTX3	196403	broad.mit.edu	37	12	58001367	58001367	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:58001367C>T	uc001sow.1	+	5	1058	c.721C>T	c.(721-723)CAG>TAG	p.Q241*	DTX3_uc001sov.1_Nonsense_Mutation_p.Q234*|DTX3_uc001sox.1_Nonsense_Mutation_p.Q234*|DTX3_uc001soy.1_Nonsense_Mutation_p.Q234*|GEFT_uc009zpy.2_5'Flank|GEFT_uc001soz.1_5'Flank	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	241					Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CATTGTCATCCAGTACGTCTT	0.602													47	153					0	0	0.014410	0	0
AGAP2	116986	broad.mit.edu	37	12	58125379	58125379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:58125379C>T	uc001spq.2	-	9	2000	c.2000G>A	c.(1999-2001)GGA>GAA	p.G667E	AGAP2_uc001spp.2_Missense_Mutation_p.G667E|AGAP2_uc001spr.2_Missense_Mutation_p.G331E	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	667					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						TGTTGTCTCTCCCCGACTATC	0.532													27	81					0	0	0.006320	0	0
LRIG3	121227	broad.mit.edu	37	12	59268347	59268347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:59268347G>A	uc001sqr.2	-	17	2950	c.2704C>T	c.(2704-2706)CAT>TAT	p.H902Y	LRIG3_uc009zqh.2_Missense_Mutation_p.H842Y|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	902						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			TTGTCAATATGGCAGGTCCCT	0.403													18	64					0	0	0.007413	0	0
MON2	23041	broad.mit.edu	37	12	62929435	62929435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:62929435C>T	uc001sre.2	+	14	2237	c.1846C>T	c.(1846-1848)CAT>TAT	p.H616Y	MON2_uc009zqj.2_Missense_Mutation_p.H616Y|MON2_uc010ssl.1_Missense_Mutation_p.H544Y|MON2_uc010ssm.1_Intron|MON2_uc010ssn.1_Missense_Mutation_p.H616Y|MON2_uc001srf.2_Missense_Mutation_p.H379Y	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	616					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		CCTGCCTCCCCATTATGCTCT	0.418													31	123					0	0	0.009535	0	0
GRIP1	23426	broad.mit.edu	37	12	66838419	66838419	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:66838419G>A	uc001stk.2	-	12	1717	c.1476C>T	c.(1474-1476)CTC>CTT	p.L492L	GRIP1_uc010sta.1_Silent_p.L436L|GRIP1_uc001stj.2_Silent_p.L274L|GRIP1_uc001stl.1_Silent_p.L384L|GRIP1_uc001stm.2_Silent_p.L492L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	544	PDZ 4.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		AAGAGTCTCGGAGGAGCTGAC	0.448													62	118					0	0	0.014410	0	0
GRIP1	23426	broad.mit.edu	37	12	66911703	66911703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:66911703G>A	uc001stk.2	-	6	797	c.556C>T	c.(556-558)CGT>TGT	p.R186C	GRIP1_uc010sta.1_Missense_Mutation_p.R130C|GRIP1_uc001stl.1_Missense_Mutation_p.R130C|GRIP1_uc001stm.2_Missense_Mutation_p.R186C	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	186	PDZ 2.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CCTCCAGGACGAACACATGTT	0.383													21	35					0	0	0.012319	0	0
CPM	1368	broad.mit.edu	37	12	69264143	69264143	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:69264143G>A	uc001sup.2	-	5	529	c.468C>T	c.(466-468)TTC>TTT	p.F156F	CPM_uc001sur.2_Silent_p.F156F|CPM_uc001suq.2_Silent_p.F156F	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	156					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			AAGCATCGGGGAAATTTCGAT	0.398													18	63					0	0	0.012319	0	0
CNOT2	4848	broad.mit.edu	37	12	70704717	70704717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:70704717G>A	uc001svv.2	+	3	670	c.91G>A	c.(91-93)GAG>AAG	p.E31K	CNOT2_uc009zro.2_Missense_Mutation_p.E31K|CNOT2_uc009zrp.2_Missense_Mutation_p.E11K|CNOT2_uc009zrq.2_Missense_Mutation_p.E31K	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	31					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			GAAGTTTGTAGAGGGGGTCGA	0.368													19	57					0	0	0.007413	0	0
TSPAN8	7103	broad.mit.edu	37	12	71526560	71526560	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:71526560A>C	uc009zrt.1	-	6	651	c.489T>G	c.(487-489)AAT>AAG	p.N163K	TSPAN8_uc001swk.1_Missense_Mutation_p.N163K|TSPAN8_uc001swj.1_Missense_Mutation_p.N163K	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	163	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			GTTGAAAATTATTTCCCCAAT	0.368													139	202					0	0	0.014410	0	0
LGR5	8549	broad.mit.edu	37	12	71977622	71977622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:71977622C>T	uc001swl.2	+	18	1880	c.1832C>T	c.(1831-1833)GCC>GTC	p.A611V	LGR5_uc001swm.2_Missense_Mutation_p.A587V|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	611	Helical; Name=2; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GTCTCCAGTGCCGTGCTGGCT	0.512													104	350					0	0	0.014410	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72050882	72050882	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:72050882G>A	uc001swo.2	-	2	1157	c.798C>T	c.(796-798)TTC>TTT	p.F266F	ZFC3H1_uc010sts.1_Silent_p.F266F|ZFC3H1_uc001swp.2_Silent_p.F266F	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	266					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TTTGGTCCTCGAAGTTCAATG	0.363													33	79					0	0	0.013726	0	0
TRHDE	29953	broad.mit.edu	37	12	73015504	73015504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:73015504C>T	uc001sxa.2	+	15	2543	c.2513C>T	c.(2512-2514)TCA>TTA	p.S838L		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	838	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ACACTTATTTCAGATTGGATT	0.393													4	27					0	0	0.014758	0	0
CAPS2	84698	broad.mit.edu	37	12	75683520	75683520	+	Missense_Mutation	SNP	G	A	A	rs144198119		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:75683520G>A	uc001sxk.3	-	15	1530	c.1333C>T	c.(1333-1335)CGT>TGT	p.R445C	CAPS2_uc001sxm.3_Missense_Mutation_p.R213C|CAPS2_uc009zsa.2_Missense_Mutation_p.R35C|CAPS2_uc001sxi.3_Missense_Mutation_p.R181C|CAPS2_uc001sxj.3_Missense_Mutation_p.R356C|CAPS2_uc001sxl.3_Missense_Mutation_p.R426C	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	445	EF-hand 1.						calcium ion binding			ovary(2)	2						GTCAAAATACGAACACCTCTT	0.333													21	84					0	0	0.016522	0	0
GLIPR1L2	144321	broad.mit.edu	37	12	75804347	75804347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:75804347G>A	uc001sxr.1	+	2	376	c.368G>A	c.(367-369)GGC>GAC	p.G123D	GLIPR1L2_uc001sxp.1_Missense_Mutation_p.G123D|GLIPR1L2_uc001sxq.1_Missense_Mutation_p.G16D	NM_152436	NP_689649	Q4G1C9	GRPL2_HUMAN	GLI pathogenesis-related 1 like 2	123						integral to membrane				ovary(1)	1						ATGTGGGTCGGCCCTGAAAAT	0.353													15	41					0	0	0.004990	0	0
NAV3	89795	broad.mit.edu	37	12	78598733	78598733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:78598733C>T	uc001syp.2	+	39	7026	c.6853C>T	c.(6853-6855)CCA>TCA	p.P2285S	NAV3_uc001syo.2_Missense_Mutation_p.P2263S|NAV3_uc010sub.1_Missense_Mutation_p.P1742S|NAV3_uc009zsf.2_Missense_Mutation_p.P1094S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2285						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GAAACGCACACCATGGGAAGA	0.453										HNSCC(70;0.22)			4	26					0	0	0.014758	0	0
SYT1	6857	broad.mit.edu	37	12	79679694	79679694	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:79679694G>A	uc001sys.2	+	6	965	c.294G>A	c.(292-294)GGG>GGA	p.G98G	SYT1_uc001syt.2_Silent_p.G98G|SYT1_uc001syu.2_Silent_p.G98G|SYT1_uc001syv.2_Silent_p.G98G	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	98	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity	p.G98G(2)		skin(3)|pancreas(2)|ovary(1)	6						AAAAAGGAGGGAAGAATGCCA	0.338													15	44					0	0	0.028581	0	0
PPFIA2	8499	broad.mit.edu	37	12	81660787	81660787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:81660787G>A	uc001szo.1	-	30	3660	c.3499C>T	c.(3499-3501)CTT>TTT	p.L1167F	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1066										ovary(3)|lung(2)|pancreas(1)	6						TCTCTTTCAAGAATCTGCCTT	0.353													10	37					0	0	0.008291	0	0
TMTC2	160335	broad.mit.edu	37	12	83251033	83251033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:83251033C>T	uc001szt.2	+	2	760	c.328C>T	c.(328-330)CTT>TTT	p.L110F	TMTC2_uc001szr.1_Missense_Mutation_p.L110F|TMTC2_uc001szs.1_Missense_Mutation_p.L110F|TMTC2_uc010suk.1_Intron	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	110	Helical; (Potential).					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						CAAGATCCTCCTTGGTGATGG	0.532													38	128					0	0	0.025465	0	0
RASSF9	9182	broad.mit.edu	37	12	86199465	86199465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:86199465G>A	uc001taf.1	-	2	662	c.323C>T	c.(322-324)CCC>CTC	p.P108L		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	108	Ras-associating.				endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						TTGCATATTGGGCTGCTCATC	0.443													50	154					0	0	0.014410	0	0
NTS	4922	broad.mit.edu	37	12	86276074	86276074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:86276074C>T	uc001tag.2	+	4	541	c.434C>T	c.(433-435)CCT>CTT	p.P145L		NM_006183	NP_006174	P30990	NEUT_HUMAN	neurotensin/neuromedin N preproprotein	145					regulation of blood vessel size|signal transduction	extracellular region|soluble fraction|transport vesicle	neuropeptide hormone activity				0						AGAAAAATTCCTTATATTCTG	0.313													52	147					0	0	0.014410	0	0
C12orf50	160419	broad.mit.edu	37	12	88390364	88390364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:88390364C>T	uc001tam.1	-	5	517	c.349G>A	c.(349-351)GAG>AAG	p.E117K	C12orf50_uc001tan.2_Missense_Mutation_p.E171K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	117										skin(2)|ovary(1)	3						TAACACATCTCCTTTATTGCT	0.284													15	40					0	0	0.020292	0	0
EPYC	1833	broad.mit.edu	37	12	91363872	91363872	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:91363872C>T	uc001tbk.2	-	6	840	c.747G>A	c.(745-747)TTG>TTA	p.L249L		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	249	LRR 4.				female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						GGATGTGGTCCAAGTTGTTAT	0.413													40	103					0	0	0.008740	0	0
EEA1	8411	broad.mit.edu	37	12	93221822	93221822	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:93221822G>A	uc001tck.2	-	12	1535	c.1270C>T	c.(1270-1272)CTG>TTG	p.L424L		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	424	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						TCTGTCTCCAGAAGTTTGCTA	0.378													29	98					0	0	0.010818	0	0
NTN4	59277	broad.mit.edu	37	12	96181211	96181211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:96181211C>T	uc001tei.2	-	2	540	c.91G>A	c.(91-93)GAA>AAA	p.E31K	NTN4_uc009ztf.2_Missense_Mutation_p.E31K|NTN4_uc009ztg.2_5'UTR	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	31	Laminin N-terminal.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CAGGCTTTTTCACAGCGGGAA	0.512													33	103					0	0	0.017118	0	0
HAL	3034	broad.mit.edu	37	12	96379924	96379924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:96379924G>A	uc001tem.1	-	13	1363	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Nonsense_Mutation_p.R148*|HAL_uc010sux.1_Nonsense_Mutation_p.R356*	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	356					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	CGGTGAGGTCGAAGAGCATGA	0.333													23	48					0	0	0.021523	0	0
C12orf63	374467	broad.mit.edu	37	12	97051840	97051840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:97051840G>A	uc001tet.1	+	4	634	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	186										skin(6)|ovary(1)	7						GGAAAAATGGGAAACACTAGT	0.333													21	74					0	0	0.014323	0	0
ANKS1B	56899	broad.mit.edu	37	12	99223110	99223110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:99223110G>A	uc001tge.1	-	19	3325	c.2908C>T	c.(2908-2910)CCT>TCT	p.P970S	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc001tgk.2_Missense_Mutation_p.P267S|ANKS1B_uc010svd.1_5'UTR|ANKS1B_uc001tgd.1_Intron|ANKS1B_uc009ztq.2_5'UTR|ANKS1B_uc010sve.1_5'UTR|ANKS1B_uc001tgh.3_5'UTR|ANKS1B_uc001tgi.2_Missense_Mutation_p.P196S|ANKS1B_uc009ztr.2_Intron|ANKS1B_uc001tgj.2_Intron|ANKS1B_uc009ztp.2_5'UTR|ANKS1B_uc010svf.1_5'UTR|ANKS1B_uc001tgg.3_Intron|ANKS1B_uc010svg.1_Intron|ANKS1B_uc009zts.1_Missense_Mutation_p.P196S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	970						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AACTGAGGAGGAGTGTGATTA	0.443													20	81					0	0	0.010504	0	0
ANKS1B	56899	broad.mit.edu	37	12	99478707	99478707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:99478707G>A	uc001tge.1	-	16	3038	c.2621C>T	c.(2620-2622)CCA>CTA	p.P874L	ANKS1B_uc001tgf.1_Missense_Mutation_p.P450L|ANKS1B_uc001tgk.2_Missense_Mutation_p.P171L|ANKS1B_uc001tgd.1_Missense_Mutation_p.P100L|ANKS1B_uc001tgi.2_Missense_Mutation_p.P100L|ANKS1B_uc009ztr.2_Missense_Mutation_p.P100L|ANKS1B_uc001tgj.2_Missense_Mutation_p.P100L|ANKS1B_uc001tgg.3_Missense_Mutation_p.P43L|ANKS1B_uc010svg.1_Missense_Mutation_p.P69L|ANKS1B_uc009zts.1_Missense_Mutation_p.P100L|ANKS1B_uc001tgm.1_Missense_Mutation_p.P100L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	874	SAM 1.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GCTCACCTTTGGAAGGAGCTG	0.413													4	12					0	0	0.009096	0	0
ANKS1B	56899	broad.mit.edu	37	12	100169344	100169344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:100169344G>A	uc001tge.1	-	7	1360	c.943C>T	c.(943-945)CCT>TCT	p.P315S	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Missense_Mutation_p.P281S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	315						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTTTGGGAAGGAGACTCAACA	0.393													14	52					0	0	0.004990	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813822	100813822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:100813822C>T	uc010svi.1	+	12	1968	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F	SLC17A8_uc009ztx.2_Missense_Mutation_p.S502F	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	552	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						GGAGCCACCTCCCAGAATTGT	0.453													11	31					0	0	0.010729	0	0
ANO4	121601	broad.mit.edu	37	12	101430900	101430900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:101430900C>T	uc010svm.1	+	10	1441	c.869C>T	c.(868-870)TCC>TTC	p.S290F	ANO4_uc001thw.2_Missense_Mutation_p.S255F|ANO4_uc001thx.2_Missense_Mutation_p.S290F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	290	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ACCAATGGCTCCTATGAAGCT	0.348										HNSCC(74;0.22)			41	134					0	0	0.014410	0	0
MYBPC1	4604	broad.mit.edu	37	12	102025848	102025848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:102025848G>A	uc001tii.2	+	6	515	c.413G>A	c.(412-414)GGA>GAA	p.G138E	MYBPC1_uc001tif.1_Missense_Mutation_p.G151E|MYBPC1_uc001tig.2_Missense_Mutation_p.G163E|MYBPC1_uc010svq.1_Missense_Mutation_p.G125E|MYBPC1_uc001tih.2_Missense_Mutation_p.G163E|MYBPC1_uc001tij.2_Missense_Mutation_p.G138E|MYBPC1_uc010svr.1_Missense_Mutation_p.G138E|MYBPC1_uc010svs.1_Missense_Mutation_p.G138E|MYBPC1_uc010svt.1_Missense_Mutation_p.G126E|MYBPC1_uc010svu.1_Missense_Mutation_p.G138E|MYBPC1_uc001tik.2_Missense_Mutation_p.G112E	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	138	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AACTTTGCAGGAAATTACAGA	0.383													46	108					0	0	0.014410	0	0
STAB2	55576	broad.mit.edu	37	12	104044340	104044340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:104044340G>A	uc001tjw.2	+	11	1427	c.1241G>A	c.(1240-1242)GGA>GAA	p.G414E		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	414	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACAGACAAGGGACTGAAAGGA	0.418													28	56					0	0	0.007291	0	0
RFX4	5992	broad.mit.edu	37	12	107075789	107075789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:107075789C>T	uc001tlr.2	+	5	400	c.334C>T	c.(334-336)CCT>TCT	p.P112S	RFX4_uc010swv.1_RNA|RFX4_uc001tls.2_Missense_Mutation_p.P121S|RFX4_uc001tlt.2_Missense_Mutation_p.P121S|RFX4_uc001tlv.2_5'Flank|uc001tlu.3_RNA	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	112	|RFX-type winged-helix.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						GCAGCAGTTTCCTCAGTTAAC	0.498													27	87					0	0	0.008361	0	0
WSCD2	9671	broad.mit.edu	37	12	108642090	108642091	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:108642090_108642091GG>AA	uc001tms.2	+	9	2412_2413	c.1668_1669GG>AA	c.(1666-1671)ACGGGT>ACAAGT	p.G557S	WSCD2_uc001tmt.2_Missense_Mutation_p.G557S|WSCD2_uc001tmu.2_Missense_Mutation_p.G325S	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	557						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GGAACCTAACGGGTGTCCCCGA	0.584													21	49					0	0	0.004672	0	0
FOXN4	121643	broad.mit.edu	37	12	109717605	109717605	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:109717605G>A	uc001toe.3	-	10	1530	c.1425C>T	c.(1423-1425)TCC>TCT	p.S475S	FOXN4_uc009zvg.2_Silent_p.S272S|FOXN4_uc001tof.3_Silent_p.S295S	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	475					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						AGTCTGGGAAGGACTGGTCGC	0.642													6	26					0	0	0.004482	0	0
MYO1H	283446	broad.mit.edu	37	12	109845641	109845641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:109845641G>A	uc010sxn.1	+	9	1030	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						CTACGCTAGAGATGCAATGGC	0.438													29	73					0	0	0.008361	0	0
TCHP	84260	broad.mit.edu	37	12	110352349	110352349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:110352349G>A	uc001tpn.2	+	11	1390	c.1237G>A	c.(1237-1239)GAG>AAG	p.E413K	TCHP_uc001tpo.1_RNA|TCHP_uc001tpp.2_Missense_Mutation_p.E413K	NM_001143852	NP_001137324	Q9BT92	TCHP_HUMAN	trichoplein	413	Trichohyalin/plectin homology domain.|Glu-rich.|Potential.|Interaction with keratin proteins.				apoptosis|negative regulation of cell growth	apical cortex|centrosome|keratin filament|mitochondrion|plasma membrane	protein binding			skin(1)	1						TCGAAATCTTGAGGAGGTGAG	0.522													43	65					0	0	0.007835	0	0
ANAPC7	51434	broad.mit.edu	37	12	110815261	110815261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:110815261C>T	uc001tqo.2	-	9	1397	c.1396G>A	c.(1396-1398)GAT>AAT	p.D466N	ANAPC7_uc001tqp.3_Missense_Mutation_p.D466N	NM_016238	NP_057322	Q9UJX3	APC7_HUMAN	anaphase-promoting complex subunit 7 isoform a	466	TPR 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding				0						AGGGCTTTATCTAATAATGTT	0.413													52	169					0	0	0.014410	0	0
C12orf24	29902	broad.mit.edu	37	12	110925695	110925695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:110925695G>A	uc001tqu.3	+	6	1099	c.650G>A	c.(649-651)AGA>AAA	p.R217K	C12orf24_uc001tqt.2_RNA|C12orf24_uc001tqv.3_RNA|C12orf24_uc009zvp.2_RNA	NM_013300	NP_037432	Q8WUB2	CL024_HUMAN	hypothetical protein LOC29902	217											0						TCTAAAACAAGATGTAAGTCA	0.358													40	133					0	0	0.014410	0	0
TCTN1	79600	broad.mit.edu	37	12	111066571	111066571	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:111066571G>A	uc009zvs.2	+	4	581	c.473_splice	c.e4-1	p.Y158_splice	TCTN1_uc010syb.1_Splice_Site_p.Y158_splice|TCTN1_uc009zvr.1_Splice_Site|TCTN1_uc001trl.2_Splice_Site|TCTN1_uc001trm.2_Splice_Site_p.Y98_splice|TCTN1_uc010syc.1_Splice_Site|TCTN1_uc001tro.2_Splice_Site|TCTN1_uc001trp.3_Splice_Site_p.Y158_splice|TCTN1_uc001trn.3_Splice_Site_p.Y158_splice|TCTN1_uc001tri.2_Splice_Site_p.Y102_splice|TCTN1_uc001trj.1_Splice_Site_p.Y102_splice|TCTN1_uc001trk.3_Splice_Site|HVCN1_uc001trq.1_Intron	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2						multicellular organismal development	extracellular region					0						TTAAAAAACAGATAAACCTGC	0.264													13	29					0	0	0.016723	0	0
CCDC63	160762	broad.mit.edu	37	12	111317782	111317782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:111317782G>A	uc001trv.1	+	6	757	c.562G>A	c.(562-564)GAG>AAG	p.E188K	CCDC63_uc009zvt.1_Intron|CCDC63_uc010sye.1_Missense_Mutation_p.E148K|CCDC63_uc001trw.1_Missense_Mutation_p.E103K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	188	Potential.									skin(6)|ovary(1)|pancreas(1)	8						CCTACGATTTGAGAAGGCTGC	0.473													71	186					0	0	0.014410	0	0
CCDC63	160762	broad.mit.edu	37	12	111321970	111321970	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:111321970G>A	uc001trv.1	+	8	1185	c.990G>A	c.(988-990)GAG>GAA	p.E330E	CCDC63_uc010sye.1_Silent_p.E290E|CCDC63_uc001trw.1_Silent_p.E245E	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	330										skin(6)|ovary(1)|pancreas(1)	8						TGGCCAAGGAGGAGAAGAATT	0.532													29	105					0	0	0.008361	0	0
CUX2	23316	broad.mit.edu	37	12	111757990	111757990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:111757990C>T	uc001tsa.1	+	17	2330	c.2177C>T	c.(2176-2178)TCG>TTG	p.S726L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	726						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GTGCCCCCCTCGCCCCCGGAG	0.741													3	7					0	0	0.004672	0	0
C12orf51	283450	broad.mit.edu	37	12	112648045	112648045	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:112648045G>A	uc009zwc.2	-	43	6393	c.6375C>T	c.(6373-6375)ACC>ACT	p.T2125T	C12orf51_uc001ttr.1_Silent_p.T300T	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AGTTAGCTCGGGTTTTGGTGT	0.517													55	150					0	0	0.014410	0	0
C12orf52	84934	broad.mit.edu	37	12	113629415	113629415	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:113629415C>T	uc001tur.1	+	4	1071	c.603C>T	c.(601-603)TCC>TCT	p.S201S	C12orf52_uc009zwg.1_Silent_p.S198S|C12orf52_uc001tus.1_Silent_p.S201S|C12orf52_uc001tut.1_Silent_p.S225S	NM_032848	NP_116237	Q96K30	RITA_HUMAN	hypothetical protein LOC84934	201	Interaction with tubulin.				negative regulation of Notch signaling pathway|negative regulation of transcription from RNA polymerase II promoter|neurogenesis|Notch signaling pathway|nuclear export	centrosome|nucleus	tubulin binding				0						TTTCCCATTCCCTCACCCACC	0.612													26	88					0	0	0.021523	0	0
MED13L	23389	broad.mit.edu	37	12	116457155	116457155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:116457155G>A	uc001tvw.2	-	7	938	c.883C>T	c.(883-885)CCT>TCT	p.P295S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	295				PQSVA -> SISLI (in Ref. 5; BAA82977).	regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		ACACTCTGAGGAACCGGGATG	0.507													24	68					0	0	0.006320	0	0
FBXO21	23014	broad.mit.edu	37	12	117612501	117612502	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:117612501_117612502GG>AA	uc001twk.2	-	5	732_733	c.693_694CC>TT	c.(691-696)ACCCTT>ACTTTT	p.L232F	FBXO21_uc001twj.2_Missense_Mutation_p.L232F|FBXO21_uc009zwq.2_Missense_Mutation_p.L232F	NM_033624	NP_296373	O94952	FBX21_HUMAN	F-box only protein 21 isoform 1	232					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			kidney(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0291)		ATGCCCCGAAGGGTTTTGCAAA	0.48													17	61					0	0	0.004672	0	0
NOS1	4842	broad.mit.edu	37	12	117655926	117655926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:117655926C>T	uc001twm.1	-	28	4900	c.4214G>A	c.(4213-4215)CGA>CAA	p.R1405Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1405					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTCGTACGTTCGCAGGGTGAC	0.478													166	413					0	0	0.014410	0	0
KSR2	283455	broad.mit.edu	37	12	117968819	117968819	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:117968819C>T	uc001two.2	-	12	1698	c.1643_splice	c.e12-1	p.D548_splice		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2						intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGCACCACATCTGAAAACCAG	0.547													70	168					0	0	0.014410	0	0
SRRM4	84530	broad.mit.edu	37	12	119419818	119419818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:119419818G>A	uc001txa.1	+	1	423	c.131G>A	c.(130-132)AGG>AAG	p.R44K		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	44					cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CCGCTGCCAAGGTAATGATCT	0.622													6	15					0	0	0.004482	0	0
CCDC60	160777	broad.mit.edu	37	12	119937890	119937890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:119937890G>A	uc001txe.2	+	6	1030	c.565G>A	c.(565-567)GGT>AGT	p.G189S	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	189										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CAGGGACCCGGGTGGAAGCAA	0.423													30	146					0	0	0.017118	0	0
CCDC60	160777	broad.mit.edu	37	12	119942973	119942974	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:119942973_119942974CC>TT	uc001txe.2	+	7	1213_1214	c.748_749CC>TT	c.(748-750)CCC>TTC	p.P250F	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	250										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGGGTCCTCTCCCCAGAGCAGC	0.564													49	133					0	0	0.004672	0	0
PRKAB1	5564	broad.mit.edu	37	12	120110193	120110193	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:120110193C>T	uc009zwu.2	+	3	350	c.247C>T	c.(247-249)CGA>TGA	p.R83*	PRKAB1_uc001txg.2_Nonsense_Mutation_p.R83*	NM_006253	NP_006244	Q9Y478	AAKB1_HUMAN	AMP-activated protein kinase beta 1	83					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol					0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.166)	Adenosine monophosphate(DB00131)|Metformin(DB00331)	AACGGTGTTTCGATGGACGGG	0.537													75	231					0	0	0.014410	0	0
CIT	11113	broad.mit.edu	37	12	120288023	120288023	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:120288023G>A	uc001txi.1	-	5	524	c.471C>T	c.(469-471)ATC>ATT	p.I157I	CIT_uc001txj.1_Silent_p.I157I	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	157	Protein kinase.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GTAATTGGGGGATCCACGGGC	0.408													116	355					0	0	0.014410	0	0
GCN1L1	10985	broad.mit.edu	37	12	120569807	120569807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:120569807G>A	uc001txo.2	-	54	7350	c.7337C>T	c.(7336-7338)TCA>TTA	p.S2446L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2446	HEAT 22.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCACCCGGCTGAGGAGATGCG	0.572													6	23					0	0	0.001984	0	0
WDR66	144406	broad.mit.edu	37	12	122361869	122361869	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:122361869G>A	uc009zxk.2	+	3	862	c.720G>A	c.(718-720)AAG>AAA	p.K240K		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	240							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGTTTCAAAAGGATAAAAGCA	0.478													43	110					0	0	0.014410	0	0
HIP1R	9026	broad.mit.edu	37	12	123341062	123341062	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:123341062G>A	uc001udj.1	+	16	1544	c.1485G>A	c.(1483-1485)CAG>CAA	p.Q495Q	HIP1R_uc001udg.1_Silent_p.Q483Q|HIP1R_uc001udi.1_Silent_p.Q495Q|HIP1R_uc001udk.1_5'UTR	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	495	Potential.				receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		TGGCCTTCCAGGTGGAGCAGG	0.657													6	19					0	0	0.021553	0	0
VPS37B	79720	broad.mit.edu	37	12	123351856	123351856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:123351856G>A	uc001udl.2	-	4	768	c.665C>T	c.(664-666)CCG>CTG	p.P222L		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	222	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		CGCAGTAAACGGGGTGGCTAA	0.706													17	25					0	0	0.006122	0	0
PITPNM2	57605	broad.mit.edu	37	12	123494574	123494574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:123494574C>T	uc001uej.1	-	5	605	c.466G>A	c.(466-468)GAA>AAA	p.E156K	PITPNM2_uc001uek.1_Missense_Mutation_p.E156K|PITPNM2_uc009zxu.1_Missense_Mutation_p.E156K	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	156					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GGGTCCTCTTCTGTCTTATAC	0.552													65	155					0	0	0.014410	0	0
SNRNP35	11066	broad.mit.edu	37	12	123950372	123950372	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:123950372C>T	uc001ufb.1	+	2	401	c.285C>T	c.(283-285)GCC>GCT	p.A95A	SNRNP35_uc010tar.1_Silent_p.A100A|SNRNP35_uc009zxz.2_Silent_p.A100A|SNRNP35_uc001ufc.1_Intron	NM_022717	NP_073208	Q16560	U1SBP_HUMAN	small nuclear ribonucleoprotein 35kDa (U11/U12)	95	RRM.				mRNA processing	U12-type spliceosomal complex	nucleotide binding|RNA binding				0						AGGGCTACGCCTTCATCGAAT	0.512													49	93					0	0	0.014410	0	0
EIF2B1	1967	broad.mit.edu	37	12	124118248	124118248	+	Splice_Site	SNP	C	T	T	rs11572912		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:124118248C>T	uc001ufm.2	-	1	1	c.-142_splice	c.e1-1		GTF2H3_uc001ufo.1_5'Flank|GTF2H3_uc010tau.1_5'Flank|EIF2B1_uc001ufn.2_Splice_Site|EIF2B1_uc010tat.1_Splice_Site	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CCGTACCCCTCTTCCGGCGCA	0.711													14	30					0	0	0.016723	0	0
DNAH10	196385	broad.mit.edu	37	12	124293432	124293432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:124293432C>T	uc001uft.3	+	18	2747	c.2722C>T	c.(2722-2724)CAT>TAT	p.H908Y	DNAH10_uc010tav.1_Missense_Mutation_p.H450Y|DNAH10_uc010taw.1_Missense_Mutation_p.H393Y	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	908	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GATCATCCTTCATCCCAACAC	0.478													189	421					0	0	0.014410	0	0
TMEM132B	114795	broad.mit.edu	37	12	125900131	125900131	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:125900131C>T	uc001uhe.1	+	3	1007	c.999C>T	c.(997-999)GAC>GAT	p.D333D		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	333	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GCAGTGAGGACCAATGGGCAG	0.502													30	97					0	0	0.009535	0	0
TMEM132B	114795	broad.mit.edu	37	12	126128660	126128660	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:126128660G>A	uc001uhe.1	+	6	1469	c.1461G>A	c.(1459-1461)AAG>AAA	p.K487K	TMEM132B_uc001uhf.1_5'UTR	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	487	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGAATGGGAAGGAAATGAAGA	0.483													21	81					0	0	0.010504	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137133	126137133	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:126137133C>T	uc001uhe.1	+	8	2054	c.2046C>T	c.(2044-2046)ATC>ATT	p.I682I	TMEM132B_uc001uhf.1_Silent_p.I194I	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	682	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AAAGGGCCATCGTCTCCACAG	0.607													29	69					0	0	0.013726	0	0
PIWIL1	9271	broad.mit.edu	37	12	130846112	130846112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:130846112G>A	uc001uik.2	+	16	2026	c.1936G>A	c.(1936-1938)GGA>AGA	p.G646R	PIWIL1_uc001uij.1_Missense_Mutation_p.G646R	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	646	RNA-binding (By similarity).|Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GTCAATCGCAGGATTTGTTGC	0.488													30	99					0	0	0.012213	0	0
EP400	57634	broad.mit.edu	37	12	132498142	132498142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:132498142C>T	uc001ujn.2	+	17	3754	c.3719C>T	c.(3718-3720)TCC>TTC	p.S1240F	EP400_uc001ujl.2_Missense_Mutation_p.S1239F|EP400_uc001ujm.2_Missense_Mutation_p.S1240F	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1276	Interactions with RUVBL1 and RUVBL2.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TACCTGAGCTCCCCTCTGAGG	0.537													34	100					0	0	0.015359	0	0
GOLGA3	2802	broad.mit.edu	37	12	133385072	133385072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:133385072G>A	uc001ukz.1	-	5	1142	c.583C>T	c.(583-585)CCA>TCA	p.P195S	GOLGA3_uc001ula.1_Missense_Mutation_p.P195S|GOLGA3_uc001ulb.2_Missense_Mutation_p.P195S	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	195	Golgi-targeting domain.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		AAGTTTTCTGGGTTTAACATG	0.468													166	665					0	0	0.014410	0	0
ZNF268	10795	broad.mit.edu	37	12	133779124	133779124	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:133779124C>T	uc010tcf.1	+	6	1182	c.852C>T	c.(850-852)GCC>GCT	p.A284A	ZNF268_uc010tbv.1_Silent_p.A123A|ZNF268_uc010tbw.1_Silent_p.A123A|ZNF268_uc010tbx.1_Silent_p.A144A|ZNF268_uc010tby.1_Silent_p.A123A|ZNF268_uc010tbz.1_Silent_p.A123A|ZNF268_uc010tca.1_Silent_p.A123A|ZNF268_uc010tcb.1_Silent_p.A144A|ZNF268_uc010tcc.1_Silent_p.A123A|ZNF268_uc010tcd.1_Silent_p.A123A|ZNF268_uc010tce.1_Silent_p.A123A|ZNF268_uc010tcg.1_Silent_p.A123A|ZNF268_uc010tch.1_Silent_p.A284A	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	284	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		GTGAGAAAGCCTTCAGCAGCA	0.408													4	13					0	0	0.009096	0	0
LOC100101938	100101938	broad.mit.edu	37	13	19868687	19868687	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:19868687C>T	uc010tck.1	-	13		c.1941G>A				NR_027248				Homo sapiens cDNA clone IMAGE:5265638.												0						CCTGAGAATTCCTTTTCCTTC	0.313													3	3					0	0	0.004672	0	0
TPTE2	93492	broad.mit.edu	37	13	20067628	20067628	+	Missense_Mutation	SNP	C	T	T	rs140148307		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:20067628C>T	uc001umd.2	-	3	236	c.25G>A	c.(25-27)GAA>AAA	p.E9K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.E9K|TPTE2_uc001ume.2_Missense_Mutation_p.E9K|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	9						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		CCTTTAAATTCGTTTGTCTGT	0.358													50	81					0	0	0.014410	0	0
PSPC1	55269	broad.mit.edu	37	13	20279916	20279916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:20279916C>T	uc001uml.2	-	8	1458	c.1272G>A	c.(1270-1272)ATG>ATA	p.M424I	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	424	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TGTTCATATTCATACCCATCA	0.483													29	130					0	0	0.017118	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24468280	24468280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:24468280C>T	uc010tcw.1	-	2	227	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	C1QTNF9B_uc010tcv.1_Missense_Mutation_p.E84K|C1QTNF9B_uc001uoz.1_Missense_Mutation_p.R76Q|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.R76Q	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	76	Collagen-like 1.					collagen					0						CTACTAACCTCGTTCTCCCTT	0.443													6	40					0	0	0.008291	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24893016	24893016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:24893016G>A	uc001upj.2	+	3	288	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	76	Collagen-like 1.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		AAGGGAGAACGAGGTTAGTAG	0.453													30	160					0	0	0.015359	0	0
PARP4	143	broad.mit.edu	37	13	25021321	25021321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:25021321C>T	uc001upl.2	-	26	3224	c.3118G>A	c.(3118-3120)GAA>AAA	p.E1040K		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1040	VWFA.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		ATTTGGTCTTCTATCTATTTA	0.418													4	54					0	0	0.006214	0	0
PARP4	143	broad.mit.edu	37	13	25049660	25049660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:25049660G>A	uc001upl.2	-	15	1970	c.1864C>T	c.(1864-1866)CCT>TCT	p.P622S	PARP4_uc010tdc.1_Missense_Mutation_p.P622S	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	622	VIT.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		TCCTCCAGAGGAACCAAGTTC	0.448													58	82					0	0	0.014410	0	0
RNF17	56163	broad.mit.edu	37	13	25404622	25404622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:25404622G>A	uc001upr.2	+	17	2287	c.2246G>A	c.(2245-2247)GGA>GAA	p.G749E	RNF17_uc010tdd.1_Missense_Mutation_p.G608E|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G749E|RNF17_uc001ups.2_Missense_Mutation_p.G688E|RNF17_uc010aac.2_5'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	749	Tudor 1.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ATTTTTCAAGGATTGCCTGGA	0.303													36	64					0	0	0.019004	0	0
RNF17	56163	broad.mit.edu	37	13	25416217	25416217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:25416217G>A	uc001upr.2	+	19	2562	c.2521G>A	c.(2521-2523)GAT>AAT	p.D841N	RNF17_uc010tdd.1_Missense_Mutation_p.D700N|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.D841N|RNF17_uc001ups.2_Missense_Mutation_p.D780N|RNF17_uc010aac.2_Missense_Mutation_p.D39N|RNF17_uc010aad.2_5'Flank	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	841					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TGAGCTTTTCGATTCTCTTGG	0.348													18	33					0	0	0.008871	0	0
RNF17	56163	broad.mit.edu	37	13	25418018	25418018	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:25418018T>G	uc001upr.2	+	20	2781	c.2740T>G	c.(2740-2742)TAT>GAT	p.Y914D	RNF17_uc010tdd.1_Missense_Mutation_p.Y773D|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.Y914D|RNF17_uc001ups.2_Missense_Mutation_p.Y853D|RNF17_uc010aac.2_Missense_Mutation_p.Y112D|RNF17_uc010aad.2_5'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	914					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCAGTCACTTTATAATAAGGA	0.313													27	37					0	0	0.006320	0	0
KL	9365	broad.mit.edu	37	13	33628096	33628096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:33628096C>T	uc001uus.2	+	2	1020	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S	KL_uc001uur.1_Missense_Mutation_p.P31S	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	338	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TGGTGACTATCCCGAGAGCAT	0.393													88	113					0	0	0.014410	0	0
SMAD9	4093	broad.mit.edu	37	13	37453547	37453547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:37453547G>A	uc001uvw.2	-	2	623	c.280C>T	c.(280-282)CGC>TGC	p.R94C	SMAD9_uc001uvx.2_Missense_Mutation_p.R94C|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	94	MH1.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		CGCCACACGCGACAGTAAATC	0.627													23	54					0	0	0.021523	0	0
LCP1	3936	broad.mit.edu	37	13	46726977	46726977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:46726977C>T	uc001vaz.3	-	7	803	c.677G>A	c.(676-678)GGA>GAA	p.G226E	LCP1_uc001vba.3_Missense_Mutation_p.G226E	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	226	Actin-binding 1.|CH 1.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		CCACAGAAGTCCCAGGACCAG	0.493			T	BCL6	NHL 								20	28					0	0	0.012319	0	0
RCBTB2	1102	broad.mit.edu	37	13	49073831	49073831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:49073831G>A	uc001vch.2	-	13	1681	c.1310C>T	c.(1309-1311)TCA>TTA	p.S437L	RCBTB2_uc010tgg.1_Missense_Mutation_p.S442L|RCBTB2_uc001vci.2_Missense_Mutation_p.S413L|RCBTB2_uc010tgh.1_Missense_Mutation_p.S163L|RCBTB2_uc001vcj.2_Missense_Mutation_p.S389L|RCBTB2_uc010acv.1_RNA	NM_001268	NP_001259	O95199	RCBT2_HUMAN	regulator of chromosome condensation and BTB	437	BTB 1.						Ran guanyl-nucleotide exchange factor activity			ovary(2)|lung(2)|skin(1)	5		all_cancers(8;4.86e-71)|all_epithelial(8;2.11e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;2.3e-10)|Lung NSC(96;1.07e-07)|Breast(56;1.53e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.00826)|Myeloproliferative disorder(33;0.0179)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(99;1.8e-09)|LUSC - Lung squamous cell carcinoma(3;0.116)		AACAGGATATGAAAATTCACT	0.418													40	53					0	0	0.007835	0	0
LECT1	11061	broad.mit.edu	37	13	53307459	53307459	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:53307459C>T	uc001vhf.2	-	3	360	c.249G>A	c.(247-249)GGG>GGA	p.G83G	LECT1_uc001vhg.2_Silent_p.G83G|LECT1_uc001vhh.2_Silent_p.G110G	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	83					cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		CTTGTAATTTCCCATTGATAC	0.378													67	91					0	0	0.014410	0	0
PCDH8	5100	broad.mit.edu	37	13	53422434	53422434	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:53422434G>A	uc001vhi.2	-	1	341	c.138C>T	c.(136-138)ATC>ATT	p.I46I	PCDH8_uc001vhj.2_Silent_p.I46I	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	46	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CCAGGGTCCCGATGACCGTGC	0.602													109	121					0	0	0.014410	0	0
PCDH9	5101	broad.mit.edu	37	13	67800395	67800395	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:67800395G>A	uc001vik.2	-	2	2870	c.2178C>T	c.(2176-2178)TTC>TTT	p.F726F	PCDH9_uc001vil.2_Silent_p.F726F|PCDH9_uc010thl.1_Silent_p.F726F|PCDH9_uc001vin.3_Silent_p.F726F	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	726	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GATCAATCCGGAATAAGCCTT	0.438													49	81					0	0	0.014410	0	0
KLF12	11278	broad.mit.edu	37	13	74569125	74569125	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:74569125A>G	uc001vjf.2	-	2	255	c.33_splice	c.e2+1	p.K11_splice	KLF12_uc010aeq.2_Splice_Site_p.K11_splice|KLF12_uc001vjg.3_Splice_Site_p.K11_splice	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12						negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		TGACTAACCAACCTTTATTGT	0.323													11	31					0	0	0.008291	0	0
SCEL	8796	broad.mit.edu	37	13	78191759	78191759	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:78191759A>T	uc001vki.2	+	25	1647	c.1477A>T	c.(1477-1479)AAG>TAG	p.K493*	SCEL_uc001vkj.2_Nonsense_Mutation_p.K473*|SCEL_uc010thx.1_Nonsense_Mutation_p.K451*	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	493	16 X approximate tandem repeats.|13.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		TAAACTCATCAAGGTGAATCC	0.284													6	20					0	0	0.001984	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453891	84453891	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:84453891C>T	uc001vlk.2	-	1	2638	c.1752G>A	c.(1750-1752)AGG>AGA	p.R584R		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	584	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGGGCGAGATCCTAGCGTACA	0.537													14	24					0	0	0.024245	0	0
GPC5	2262	broad.mit.edu	37	13	92345744	92345744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:92345744G>A	uc010tif.1	+	3	995	c.629G>A	c.(628-630)AGA>AAA	p.R210K		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	210						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ATTCCCCAAAGAGTAATGGGA	0.522													18	28					0	0	0.006122	0	0
STK24	8428	broad.mit.edu	37	13	99118722	99118722	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:99118722T>A	uc001vnm.1	-	6	962	c.727A>T	c.(727-729)ATT>TTT	p.I243F	STK24_uc001vnn.1_Missense_Mutation_p.I231F|STK24_uc010tim.1_Missense_Mutation_p.I212F	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	243	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTCTTTGGAATGAGGAATAAA	0.483													104	55					0	0	0.014410	0	0
CLYBL	171425	broad.mit.edu	37	13	100511124	100511124	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:100511124C>T	uc001vok.2	+	3	273	c.259C>T	c.(259-261)CGA>TGA	p.R87*	CLYBL_uc010tix.1_Nonsense_Mutation_p.R87*|CLYBL_uc010tiy.1_Nonsense_Mutation_p.R87*	NM_206808	NP_996531	Q8N0X4	CLYBL_HUMAN	citrate lyase beta like precursor	87					cellular aromatic compound metabolic process	citrate lyase complex|mitochondrion	citrate (pro-3S)-lyase activity|metal ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					GAATGAAGCTCGACTGAGAAT	0.388													42	30					0	0	0.010771	0	0
ZIC2	7546	broad.mit.edu	37	13	100634891	100634891	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:100634891G>A	uc001von.2	+	1	573	c.573G>A	c.(571-573)TCG>TCA	p.S191S		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	191	Necessary for interaction with MDFIC and transcriptional activation or repression (By similarity).				brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TCGGGCGCTCGGAGCAATACC	0.667													27	17					0	0	0.024334	0	0
TMTC4	84899	broad.mit.edu	37	13	101287406	101287406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:101287406G>A	uc001vou.2	-	10	1349	c.1189C>T	c.(1189-1191)CCC>TCC	p.P397S	TMTC4_uc001vot.2_Missense_Mutation_p.P416S|TMTC4_uc010tja.1_Missense_Mutation_p.P286S|TMTC4_uc001vov.1_Missense_Mutation_p.P142S|TMTC4_uc001vow.1_Missense_Mutation_p.P180S	NM_001079669	NP_001073137	Q5T4D3	TMTC4_HUMAN	transmembrane and tetratricopeptide repeat	397	Helical; (Potential).					integral to membrane	binding			ovary(2)|breast(1)	3	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTACTCGCGGGGAGAAATGGG	0.488													23	17					0	0	0.018920	0	0
NALCN	259232	broad.mit.edu	37	13	101755619	101755619	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:101755619G>A	uc001vox.1	-	26	3150	c.2961C>T	c.(2959-2961)GTC>GTT	p.V987V		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	987	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGCACCGAAGGACCATTAGAA	0.443													61	36					0	0	0.014410	0	0
FAM155A	728215	broad.mit.edu	37	13	107823029	107823029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:107823029G>A	uc001vql.2	-	3	1709	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	398						integral to membrane	binding			skin(1)	1						CCTGTGACAGGAGCCACTTTT	0.448													56	25					0	0	0.014410	0	0
MYO16	23026	broad.mit.edu	37	13	109704812	109704812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:109704812G>A	uc001vqt.1	+	25	3097	c.2971G>A	c.(2971-2973)GAA>AAA	p.E991K	MYO16_uc010agk.1_Missense_Mutation_p.E1013K|MYO16_uc001vqu.1_Missense_Mutation_p.E791K|MYO16_uc010tjh.1_Missense_Mutation_p.E503K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	991	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GAATTATCTAGAACTTAGTAA	0.284													41	23					0	0	0.008740	0	0
COL4A2	1284	broad.mit.edu	37	13	111138100	111138100	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:111138100C>G	uc001vqx.2	+	34	3413	c.3124C>G	c.(3124-3126)CCC>GCC	p.P1042A		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1042	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CATCGGAGTCCCCGGCATCCC	0.617													73	59					0	0	0.014410	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113181779	113181779	+	Missense_Mutation	SNP	G	A	A	rs141265299		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:113181779G>A	uc001vse.1	-	12	1542	c.1355C>T	c.(1354-1356)CCA>CTA	p.P452L	TUBGCP3_uc010tjq.1_Missense_Mutation_p.P442L|TUBGCP3_uc001vsf.2_Missense_Mutation_p.P452L	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	452					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					TTTAACTGTTGGATCTGATGC	0.338													143	93					0	0	0.014410	0	0
F10	2159	broad.mit.edu	37	13	113783846	113783846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:113783846G>A	uc001vsx.2	+	2	208	c.151G>A	c.(151-153)GGA>AGA	p.G51R	F10_uc010agq.1_RNA|F10_uc001vsy.2_Missense_Mutation_p.G51R|F10_uc001vsz.2_Missense_Mutation_p.G51R	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	51	Gla.		G -> V (in FA10D).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATGAAGAAAGGACACCTCGA	0.562													129	66					0	0	0.014410	0	0
ADPRHL1	113622	broad.mit.edu	37	13	114098849	114098849	+	Silent	SNP	G	A	A	rs138609269		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:114098849G>A	uc001vtq.1	-	2	357	c.270C>T	c.(268-270)ATC>ATT	p.I90I	ADPRHL1_uc001vtp.1_Silent_p.I8I	NM_138430	NP_612439	Q8NDY3	ARHL1_HUMAN	ADP-ribosylhydrolase like 1 isoform 1	90					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.0195)|GBM - Glioblastoma multiforme(44;0.116)			GCTTCTCAACGATTTCCACAT	0.547													207	124					0	0	0.014410	0	0
GRK1	6011	broad.mit.edu	37	13	114322087	114322087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr13:114322087G>A	uc010tkf.1	+	1	494	c.386G>A	c.(385-387)GGG>GAG	p.G129E		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	129	RGS.|N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			CTGGATGAGGGGATAGTGGCG	0.632													34	32					0	0	0.012213	0	0
POTEG	404785	broad.mit.edu	37	14	19553789	19553789	+	Missense_Mutation	SNP	G	A	A	rs145666754		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:19553789G>A	uc001vuz.1	+	1	425	c.373G>A	c.(373-375)GAC>AAC	p.D125N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	125										ovary(1)	1						AGACTACGACGACAGCGCTTT	0.592													58	659					0	0	0.014410	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215606	20215606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20215606C>T	uc010tkt.1	+	1	20	c.20C>T	c.(19-21)TCT>TTT	p.S7F		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAACAAGATTCTAATGTGACA	0.333													12	45					0	0	0.016723	0	0
OR4M1	441670	broad.mit.edu	37	14	20248603	20248603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20248603G>A	uc010tku.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTACCAGGAAATATCCTT	0.423													79	307					0	0	0.014410	0	0
OR4M1	441670	broad.mit.edu	37	14	20249284	20249284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20249284C>T	uc010tku.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GACTCATTTTCCCTAGATAAA	0.418													36	136					0	0	0.021022	0	0
OR4N2	390429	broad.mit.edu	37	14	20296446	20296446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20296446C>T	uc010tkv.1	+	1	839	c.839C>T	c.(838-840)CCT>CTT	p.P280L		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGATTTTTCCTTTGTTGAAT	0.438													33	119					0	0	0.012213	0	0
OR4K2	390431	broad.mit.edu	37	14	20344521	20344521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20344521C>T	uc001vwh.1	+	1	95	c.95C>T	c.(94-96)TCA>TTA	p.S32L		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATGGTGTTTTCATTGCTTTAT	0.413													66	347					0	0	0.014410	0	0
OR4K2	390431	broad.mit.edu	37	14	20345023	20345023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20345023G>A	uc001vwh.1	+	1	597	c.597G>A	c.(595-597)ATG>ATA	p.M199I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCCTCTTTATGATCTCAACAA	0.403													91	372					0	0	0.014410	0	0
OR4K5	79317	broad.mit.edu	37	14	20388940	20388940	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20388940A>T	uc010tkw.1	+	1	175	c.175A>T	c.(175-177)ATG>TTG	p.M59L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCACTCCCCTATGTACTTTCT	0.408													37	203					0	0	0.015359	0	0
OR4K5	79317	broad.mit.edu	37	14	20389381	20389381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20389381C>T	uc010tkw.1	+	1	616	c.616C>T	c.(616-618)CTT>TTT	p.L206F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TAGTGGAATTCTTTCCCTAAG	0.408													32	187					0	0	0.012213	0	0
OR4K1	79544	broad.mit.edu	37	14	20404190	20404190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20404190G>A	uc001vwj.1	+	1	365	c.365G>A	c.(364-366)AGA>AAA	p.R122K		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GCATATGACAGATTTATAGCC	0.443													23	111					0	0	0.016522	0	0
OR4K14	122740	broad.mit.edu	37	14	20483307	20483307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20483307C>T	uc010tky.1	-	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTGCAGAGTCCATGCAACACA	0.348													27	77					0	0	0.027356	0	0
OR4K13	390433	broad.mit.edu	37	14	20502846	20502846	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20502846C>T	uc010tkz.1	-	1	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGAATAAAATCTGAAGATTTT	0.398													14	35					0	0	0.020292	0	0
OR11H6	122748	broad.mit.edu	37	14	20692828	20692828	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:20692828G>A	uc010tlc.1	+	1	960	c.960G>A	c.(958-960)AAG>AAA	p.K320K		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		ATGCTCTAAAGAGAGTCCTGG	0.368													41	120					0	0	0.008740	0	0
RNASE9	390443	broad.mit.edu	37	14	21025008	21025008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:21025008C>T	uc010aho.2	-	4	380	c.221G>A	c.(220-222)GGA>GAA	p.G74E	RNASE9_uc001vxq.3_Missense_Mutation_p.G79E|RNASE9_uc010ahp.2_Missense_Mutation_p.G79E|RNASE9_uc010ahq.2_Missense_Mutation_p.G79E|RNASE9_uc010ahr.2_Missense_Mutation_p.G79E|RNASE9_uc010ahs.2_Missense_Mutation_p.G74E|RNASE9_uc010aht.2_Missense_Mutation_p.G74E|RNASE9_uc010ahu.2_Missense_Mutation_p.G74E	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	74						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		TAGTGGCATTCCAGGTTCAAT	0.378													42	133					0	0	0.010771	0	0
OR6S1	341799	broad.mit.edu	37	14	21109809	21109809	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:21109809G>A	uc001vxv.1	-	1	42	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		CTGCCAGGACGAACTCTGTTG	0.453													75	188					0	0	0.014410	0	0
CHD8	57680	broad.mit.edu	37	14	21862454	21862454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:21862454G>A	uc001was.1	-	31	4838	c.4744C>T	c.(4744-4746)CCC>TCC	p.P1582S	CHD8_uc001war.1_Missense_Mutation_p.P1478S|SNORD9_uc001wat.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1861					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GCTGCTGGGGGAAGGCGGCAT	0.498													22	76					0	0	0.024334	0	0
CHD8	57680	broad.mit.edu	37	14	21894393	21894394	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:21894393_21894394GT>AG	uc001was.1	-	5	866_867	c.772_773AC>CT	c.(772-774)ACT>CTT	p.T258L	CHD8_uc001war.1_Missense_Mutation_p.T154L	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	537					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CACTACAGGAGTGATGGTGCTA	0.356													14	22					0	0	0.004672	0	0
SALL2	6297	broad.mit.edu	37	14	21993631	21993631	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:21993631G>A	uc001wbe.2	-	2	513	c.231C>T	c.(229-231)GCC>GCT	p.A77A	SALL2_uc010tly.1_Silent_p.A75A|SALL2_uc010tlz.1_Silent_p.A75A|SALL2_uc001wbf.3_Silent_p.A75A|SALL2_uc010tma.1_Silent_p.A77A|SALL2_uc001wbg.1_Silent_p.A77A	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	77							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GTTCAGAGGAGGCCGAAGAGT	0.567													58	118					0	0	0.014410	0	0
OR10G3	26533	broad.mit.edu	37	14	22038384	22038384	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:22038384G>A	uc010tmb.1	-	1	492	c.492C>T	c.(490-492)ACC>ACT	p.T164T		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		GCAGGCGGAAGGTTAGGATGG	0.577													46	138					0	0	0.013114	0	0
OR10G3	26533	broad.mit.edu	37	14	22038433	22038433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:22038433C>T	uc010tmb.1	-	1	443	c.443G>A	c.(442-444)GGA>GAA	p.G148E		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		CATCCAGGCTCCAGCCACAAG	0.572													36	77					0	0	0.019004	0	0
OR4E2	26686	broad.mit.edu	37	14	22134220	22134220	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:22134220C>T	uc010tmd.1	+	1	924	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		AAGTTTTTTTCACGAAATCAT	0.393													7	21					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	14	22181016	22181016	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:22181016C>T	uc010tme.1	+	3		c.335C>T			uc001wbm.2_Silent_p.I96I					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		CGCTGCTCATCCTCCAGGTGC	0.527													44	107					0	0	0.009718	0	0
Unknown	0	broad.mit.edu	37	14	22337516	22337516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:22337516G>A	uc010tmf.1	+	2	389	c.310G>A	c.(310-312)GAC>AAC	p.D104N	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.D103N|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		CCAACCTGAAGACTCGGCTGT	0.498													18	83					0	0	0.006122	0	0
SLC7A7	9056	broad.mit.edu	37	14	23282435	23282435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23282435G>A	uc001wgr.3	-	2	311	c.173C>T	c.(172-174)TCC>TTC	p.S58F	SLC7A7_uc001wgs.3_Missense_Mutation_p.S58F|SLC7A7_uc001wgt.3_Missense_Mutation_p.S58F|SLC7A7_uc001wgu.3_Missense_Mutation_p.S58F|SLC7A7_uc001wgv.3_Missense_Mutation_p.S58F	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	58					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		ACCCTTGGGGGAAACAAAGAT	0.572													59	164					0	0	0.014410	0	0
LRP10	26020	broad.mit.edu	37	14	23344855	23344856	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23344855_23344856CC>TT	uc001whd.2	+	5	1251_1252	c.698_699CC>TT	c.(697-699)GCC>GTT	p.A233V	LRP10_uc001whe.2_Missense_Mutation_p.A109V	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	233	CUB 2.|Extracellular (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CGGCGGCTGGCCGTGCGCTTCA	0.624													57	134					0	0	0.004672	0	0
LRP10	26020	broad.mit.edu	37	14	23346485	23346485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23346485C>T	uc001whd.2	+	7	2444	c.1891C>T	c.(1891-1893)CCC>TCC	p.P631S	LRP10_uc001whe.2_Intron	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	631	Pro-rich.|Cytoplasmic (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		GTCTCCAGCCCCCACTACTGT	0.672													57	160					0	0	0.014410	0	0
HAUS4	54930	broad.mit.edu	37	14	23417130	23417130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23417130G>A	uc001whp.2	-	6	686	c.655C>T	c.(655-657)CAG>TAG	p.Q219*	HAUS4_uc001who.2_Intron|HAUS4_uc001whq.2_Intron|HAUS4_uc001whr.2_Nonsense_Mutation_p.Q219*|HAUS4_uc001whs.2_Nonsense_Mutation_p.Q174*|HAUS4_uc001wht.2_Nonsense_Mutation_p.Q219*|HAUS4_uc001whu.2_Nonsense_Mutation_p.Q174*|HAUS4_uc001whv.2_Nonsense_Mutation_p.Q95*|HAUS4_uc001whw.2_Nonsense_Mutation_p.Q219*|HAUS4_uc001whx.2_Nonsense_Mutation_p.Q174*	NM_017815	NP_060285	Q9H6D7	HAUS4_HUMAN	HAUS augmin-like complex, subunit 4	219					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle				ovary(1)	1						TCCTTCTGCTGGCTCTTGGCA	0.557													36	79					0	0	0.015359	0	0
MYH6	4624	broad.mit.edu	37	14	23858111	23858111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23858111C>T	uc001wjv.2	-	29	4199	c.4132G>A	c.(4132-4134)GAG>AAG	p.E1378K	uc010tnn.1_5'Flank|MIR208A_hsa-mir-208a|MI0000251_5'Flank	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1378	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCGTCCGTCTCATACTTGGTC	0.622													46	139					0	0	0.014410	0	0
MYH6	4624	broad.mit.edu	37	14	23865999	23865999	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23865999G>A	uc001wjv.2	-	19	2263	c.2196C>T	c.(2194-2196)ATC>ATT	p.I732I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	732	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GTCCCTCAGGGATGGCCACTG	0.542													27	108					0	0	0.008361	0	0
MYH7	4625	broad.mit.edu	37	14	23896073	23896073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:23896073C>T	uc001wjx.2	-	18	2063	c.1957G>A	c.(1957-1959)GAA>AAA	p.E653K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	653	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTCAGATTTTCCTGTGGCCAA	0.348													25	72					0	0	0.018920	0	0
LRRC16B	90668	broad.mit.edu	37	14	24529923	24529923	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24529923C>T	uc001wlj.2	+	25	2305	c.2148C>T	c.(2146-2148)CTC>CTT	p.L716L	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	716										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		ATGAGCTACTCTACGCTCGGG	0.627													15	48					0	0	0.028581	0	0
GMPR2	51292	broad.mit.edu	37	14	24706339	24706339	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24706339C>T	uc001wnr.2	+	6	910	c.528C>T	c.(526-528)ATC>ATT	p.I176I	GMPR2_uc001wnv.2_Silent_p.I13I|GMPR2_uc001wns.2_Silent_p.I176I|GMPR2_uc001wnt.2_Silent_p.I143I|GMPR2_uc001wnu.2_Silent_p.I140I|GMPR2_uc001wnw.2_Silent_p.I176I|GMPR2_uc010all.2_Silent_p.I148I|GMPR2_uc001wnx.2_Silent_p.I194I|GMPR2_uc010tod.1_Silent_p.I143I|GMPR2_uc010alk.1_Silent_p.I176I|GMPR2_uc010toe.1_Silent_p.I176I	NM_001002001	NP_001002001	Q9P2T1	GMPR2_HUMAN	guanosine monophosphate reductase 2 isoform 2	176					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage	cytosol	GMP reductase activity|metal ion binding			ovary(3)	3				GBM - Glioblastoma multiforme(265;0.0181)		CTGACATCATCAAAGTGGGAA	0.512													48	162					0	0	0.014410	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878173	24878173	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24878173C>T	uc001wpf.3	+	4	1491	c.1173C>T	c.(1171-1173)CCC>CCT	p.P391P		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	391					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCAATTTCCCCTTCTGGCAGA	0.562													17	43					0	0	0.028581	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878429	24878429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24878429C>T	uc001wpf.3	+	4	1747	c.1429C>T	c.(1429-1431)CCA>TCA	p.P477S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	477					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTCGGATCTCCCACAGATAGG	0.512													13	53					0	0	0.016723	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884134	24884134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24884134C>T	uc001wpf.3	+	9	3497	c.3179C>T	c.(3178-3180)GCA>GTA	p.A1060V		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1060					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTGCCAGGGGCAGCTTCTCCC	0.647													46	126					0	0	0.014410	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885236	24885236	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24885236C>T	uc001wpf.3	+	9	4599	c.4281C>T	c.(4279-4281)ATC>ATT	p.I1427I		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1427	Helical; (Potential).				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TTCCGTTTATCTACCGAACCT	0.602													56	135					0	0	0.014410	0	0
CMA1	1215	broad.mit.edu	37	14	24975306	24975306	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:24975306G>A	uc001wpp.1	-	4	558	c.528C>T	c.(526-528)AGC>AGT	p.S176S	CMA1_uc010alx.1_Silent_p.S65S	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	176	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		CTCTGAAGTGGCTGCAGGCCT	0.537													15	37					0	0	0.020292	0	0
CTSG	1511	broad.mit.edu	37	14	25044536	25044536	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:25044536C>T	uc001wpq.2	-	2	175	c.138G>A	c.(136-138)CAG>CAA	p.Q46Q		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	46	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CACATCTGCTCTGACCTGCTG	0.587													55	170					0	0	0.014410	0	0
PRKD1	5587	broad.mit.edu	37	14	30068238	30068238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:30068238G>A	uc001wqh.2	-	15	2342	c.2161C>T	c.(2161-2163)CCT>TCT	p.P721S		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	721	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CTTGCCTGAGGAAAAGGATCA	0.423													26	57					0	0	0.006320	0	0
HECTD1	25831	broad.mit.edu	37	14	31626090	31626090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:31626090G>A	uc001wrc.1	-	12	2377	c.1888C>T	c.(1888-1890)CCT>TCT	p.P630S	HECTD1_uc001wrd.1_Missense_Mutation_p.P145S	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	630					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TCAGAGGAAGGACCTGCCAAC	0.363													31	85					0	0	0.013726	0	0
BAZ1A	11177	broad.mit.edu	37	14	35234256	35234256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:35234256G>A	uc001wsk.2	-	22	4088	c.3520C>T	c.(3520-3522)CAT>TAT	p.H1174Y	BAZ1A_uc001wsl.2_Missense_Mutation_p.H1142Y	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1174	PHD-type.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		CAGTAGGTATGATGACCCCTA	0.363													21	58					0	0	0.010504	0	0
C14orf19	280655	broad.mit.edu	37	14	35409449	35409449	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:35409449G>A	uc010tpo.1	+	1		c.322G>A				NR_002937				Homo sapiens chromosome 14 open reading frame 19 protein (C14orf19) mRNA, 3' UTR.												0						GGAGGAAGAGGATGATGAACA	0.493													36	128					0	0	0.013726	0	0
SLC25A21	89874	broad.mit.edu	37	14	37153057	37153057	+	Missense_Mutation	SNP	G	A	A	rs149535012	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:37153057G>A	uc001wtz.1	-	9	1124	c.814C>T	c.(814-816)CCC>TCC	p.P272S		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	272	Solcar 3.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		ATAATCTTGGGAAGCAGGCCT	0.343													15	54					0	0	0.006122	0	0
SLC25A21	89874	broad.mit.edu	37	14	37344171	37344171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:37344171C>T	uc001wtz.1	-	2	419	c.109G>A	c.(109-111)GTG>ATG	p.V37M		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	37	Helical; Name=1; (Potential).|Solcar 1.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		CTGGTTTTCACCACATCTAGG	0.378													9	30					0	0	0.008291	0	0
SSTR1	6751	broad.mit.edu	37	14	38678629	38678629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:38678629C>T	uc001wul.1	+	3	652	c.35C>T	c.(34-36)TCC>TTC	p.S12F	SSTR1_uc010amu.1_RNA	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	12	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	TCTCCTTCCTCCTCTCCTAGC	0.746													4	22					0	0	0.014758	0	0
MIA2	117153	broad.mit.edu	37	14	39706162	39706162	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:39706162G>C	uc001wux.2	+	2	346	c.152G>C	c.(151-153)AGA>ACA	p.R51T	MIA2_uc010amy.1_5'UTR	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	51	SH3.					extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		AGAGATTATAGAGGACCTGAC	0.358													17	34					0	0	0.010504	0	0
LRFN5	145581	broad.mit.edu	37	14	42360873	42360873	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:42360873T>C	uc001wvm.2	+	4	3004	c.1806T>C	c.(1804-1806)TGT>TGC	p.C602C	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	602	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		ATGCCCAGTGTTGTAAAGCTA	0.478										HNSCC(30;0.082)			30	69					0	0	0.012213	0	0
C14orf28	122525	broad.mit.edu	37	14	45369670	45369670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:45369670C>T	uc001wvo.2	+	2	298	c.32C>T	c.(31-33)TCA>TTA	p.S11L	C14orf28_uc001wvp.1_Missense_Mutation_p.S11L	NM_001017923	NP_001017923	Q4W4Y0	CN028_HUMAN	hypothetical protein LOC122525	11										ovary(1)	1						ATCAAAGCATCAATTAAAAAT	0.328													25	98					0	0	0.021523	0	0
PRPF39	55015	broad.mit.edu	37	14	45581633	45581633	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:45581633C>G	uc001wvz.3	+	11	1855	c.1685C>G	c.(1684-1686)CCT>CGT	p.P562R	PRPF39_uc001wvy.3_Missense_Mutation_p.P441R|PRPF39_uc010and.2_Missense_Mutation_p.P352R|PRPF39_uc001wwa.1_Missense_Mutation_p.P166R	NM_017922	NP_060392	Q86UA1	PRP39_HUMAN	PRP39 pre-mRNA processing factor 39 homolog	562					mRNA processing|RNA splicing	nucleus	binding			ovary(1)|breast(1)	2						GGTTCATTACCTATTAAAATG	0.279													6	29					0	0	0.001984	0	0
FANCM	57697	broad.mit.edu	37	14	45639814	45639814	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:45639814G>A	uc001wwd.3	+	12	2124	c.2025G>A	c.(2023-2025)AAG>AAA	p.K675K	FANCM_uc010anf.2_Silent_p.K649K|FANCM_uc001wwe.3_Silent_p.K211K	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	675					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GTAGCCTAAAGAAAGATTGGT	0.299								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				10	32					0	0	0.008291	0	0
C14orf106	55320	broad.mit.edu	37	14	45711524	45711524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:45711524C>T	uc001wwf.2	-	4	1315	c.856G>A	c.(856-858)GAG>AAG	p.E286K	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	286					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						CTGAGAGTCTCAGCATTAGTA	0.368													50	114					0	0	0.014410	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50272836	50272836	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:50272836G>C	uc001wxc.2	-	19	1828	c.1760C>G	c.(1759-1761)CCA>CGA	p.P587R	SDCCAG1_uc010anj.1_Missense_Mutation_p.P587R|SDCCAG1_uc010tqi.1_Missense_Mutation_p.P566R|SDCCAG1_uc001wxe.2_Missense_Mutation_p.P545R|SDCCAG1_uc001wxd.1_5'UTR	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	587						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		CAAGGTCCGTGGGGGGATGGG	0.468													19	56					0	0	0.012319	0	0
NID2	22795	broad.mit.edu	37	14	52485805	52485805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:52485805G>A	uc001wzo.2	-	14	3236	c.3002C>T	c.(3001-3003)ACC>ATC	p.T1001I	NID2_uc010tqs.1_Missense_Mutation_p.T953I|NID2_uc010tqt.1_Missense_Mutation_p.T1001I|NID2_uc001wzp.2_Missense_Mutation_p.T1001I	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1001	Thyroglobulin type-1 1.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GTGAGGCGGGGTGGAGCCAGG	0.572													15	41					0	0	0.028581	0	0
ERO1L	30001	broad.mit.edu	37	14	53119019	53119019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:53119019G>A	uc001wzv.2	-	13	1289	c.1063C>T	c.(1063-1065)CCT>TCT	p.P355S	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	355					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					AAATGCAAAGGAAATGACCTG	0.279													32	95					0	0	0.015359	0	0
MUDENG	55745	broad.mit.edu	37	14	57749720	57749720	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:57749720T>C	uc001xcv.2	+	5	1584	c.1157T>C	c.(1156-1158)TTA>TCA	p.L386S	MUDENG_uc010tri.1_Missense_Mutation_p.L140S|MUDENG_uc010trj.1_Missense_Mutation_p.L283S	NM_018229	NP_060699	Q9H0R1	MUDEN_HUMAN	Mu-2 related death-inducing protein	386	MHD.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex				ovary(1)	1						GAGAAAAGCTTATTGATCTGG	0.264													44	124					0	0	0.014410	0	0
SLC35F4	341880	broad.mit.edu	37	14	58055945	58055945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:58055945C>T	uc001xdb.1	-	3	684	c.684G>A	c.(682-684)ATG>ATA	p.M228I	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Missense_Mutation_p.M69I	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TGAATTTTTTCATTGGAGATT	0.333													35	54					0	0	0.007835	0	0
C14orf37	145407	broad.mit.edu	37	14	58605247	58605247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:58605247G>A	uc001xdc.2	-	2	941	c.830C>T	c.(829-831)TCC>TTC	p.S277F	C14orf37_uc010tro.1_Missense_Mutation_p.S315F|C14orf37_uc001xdd.2_Missense_Mutation_p.S277F|C14orf37_uc001xde.2_Missense_Mutation_p.S277F	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	277	Extracellular (Potential).					integral to membrane	binding				0						GGTGTACTCGGAAGTTTCGAG	0.557													61	86					0	0	0.014410	0	0
DAAM1	23002	broad.mit.edu	37	14	59791096	59791096	+	Missense_Mutation	SNP	C	T	T	rs150648068		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:59791096C>T	uc001xdz.1	+	8	1038	c.913C>T	c.(913-915)CGC>TGC	p.R305C	DAAM1_uc001xea.1_Missense_Mutation_p.R305C|DAAM1_uc001xeb.1_Missense_Mutation_p.R305C	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	305	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		ACTTCATCTTCGCTATGAATT	0.284													35	101					0	0	0.008740	0	0
JKAMP	51528	broad.mit.edu	37	14	59954515	59954515	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:59954515T>C	uc001xei.3	+	3	764	c.262T>C	c.(262-264)TTC>CTC	p.F88L	JKAMP_uc001xef.3_Missense_Mutation_p.F74L|JKAMP_uc001xeh.3_Missense_Mutation_p.F68L|JKAMP_uc001xeg.3_Missense_Mutation_p.F82L|JKAMP_uc010try.1_Missense_Mutation_p.F11L|JKAMP_uc001xej.3_Missense_Mutation_p.F11L	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	89	Helical; (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						TTTACATTGGTTCTTCATTGA	0.383													133	383					0	0	0.014410	0	0
C14orf39	317761	broad.mit.edu	37	14	60903642	60903642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:60903642C>T	uc001xez.3	-	18	1795	c.1685G>A	c.(1684-1686)GGT>GAT	p.G562D	C14orf39_uc010apo.2_Missense_Mutation_p.G273D	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	562										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TGAATTTTGACCCTGTCCAAA	0.318													74	176					0	0	0.014410	0	0
SYT16	83851	broad.mit.edu	37	14	62547948	62547948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:62547948G>A	uc001xfu.1	+	4	1587	c.1390G>A	c.(1390-1392)GAA>AAA	p.E464K	SYT16_uc010tsd.1_3'UTR|SYT16_uc010tse.1_Missense_Mutation_p.E22K	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	464										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CCCAGAAGGGGAAATGAAAGT	0.498													12	27					0	0	0.016723	0	0
SYNE2	23224	broad.mit.edu	37	14	64476784	64476784	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:64476784C>T	uc001xgm.2	+	32	4908	c.4678C>T	c.(4678-4680)CTG>TTG	p.L1560L	SYNE2_uc001xgl.2_Silent_p.L1560L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1560	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGTCATCTCCCTGCAGGCTTC	0.418													12	32					0	0	0.013537	0	0
SYNE2	23224	broad.mit.edu	37	14	64593101	64593101	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:64593101C>T	uc001xgm.2	+	72	13841	c.13611C>T	c.(13609-13611)TTC>TTT	p.F4537F	SYNE2_uc001xgl.2_Silent_p.F4537F|SYNE2_uc010apy.2_Silent_p.F922F|SYNE2_uc010apz.1_Silent_p.F429F	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4537	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTGAACTATTCCTGACCCTCA	0.418													25	46					0	0	0.027356	0	0
ZBTB1	22890	broad.mit.edu	37	14	64988778	64988778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:64988778C>T	uc001xhh.3	+	4	987	c.556C>T	c.(556-558)CCT>TCT	p.P186S	ZBTB1_uc010aqg.2_Missense_Mutation_p.P186S|ZBTB1_uc001xhi.2_Missense_Mutation_p.P186S	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		AGGTAATTTTCCTGAGCCACT	0.413													31	86					0	0	0.009535	0	0
GPHN	10243	broad.mit.edu	37	14	67647551	67647551	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:67647551T>A	uc001xiy.2	+	22	3229	c.2108T>A	c.(2107-2109)ATG>AAG	p.M703K	GPHN_uc001xix.2_Missense_Mutation_p.M736K|GPHN_uc010tss.1_Missense_Mutation_p.M749K|GPHN_uc010tst.1_Missense_Mutation_p.M672K|GPHN_uc010tsu.1_Missense_Mutation_p.M626K	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	703	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		CTGATGAGCATGCGCAGTGCC	0.478			T	MLL	AL								10	27					0	0	0.008291	0	0
ACTN1	87	broad.mit.edu	37	14	69378929	69378929	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:69378929A>T	uc001xkl.2	-	4	681	c.371T>A	c.(370-372)CTG>CAG	p.L124Q	ACTN1_uc010ttb.1_Missense_Mutation_p.L59Q|ACTN1_uc001xkm.2_Missense_Mutation_p.L124Q|ACTN1_uc001xkn.2_Missense_Mutation_p.L124Q|ACTN1_uc001xko.1_Missense_Mutation_p.L59Q|ACTN1_uc010ttd.1_Missense_Mutation_p.L103Q	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	124	CH 1.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GATCATGCCCAGGGTCATCTT	0.537											OREG0022758	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	139					0	0	0.010771	0	0
ERH	2079	broad.mit.edu	37	14	69847312	69847312	+	Nonsense_Mutation	SNP	C	T	T	rs11545983		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:69847312C>T	uc001xlc.2	-	4	329	c.258G>A	c.(256-258)TGG>TGA	p.W86*		NM_004450	NP_004441	P84090	ERH_HUMAN	enhancer of rudimentary homolog	86					cell cycle|pyrimidine nucleoside metabolic process	midbody	protein binding				0				all cancers(60;0.00365)|BRCA - Breast invasive adenocarcinoma(234;0.0137)|OV - Ovarian serous cystadenocarcinoma(108;0.0507)		TCTCTTTAATCCAGTCTTTGT	0.502													30	95					0	0	0.015359	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713587	70713587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:70713587C>T	uc010ttg.1	-	1	932	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NR_003951				SubName: Full=ADAM21-like protein;												0						GAAAACATTTCCTTGATTCCA	0.378													31	91					0	0	0.007291	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199749	71199749	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:71199749G>A	uc001xmm.2	-	11	2337	c.2337C>T	c.(2335-2337)CCC>CCT	p.P779P	MAP3K9_uc010ttk.1_Silent_p.P507P|MAP3K9_uc001xmk.2_Silent_p.P512P|MAP3K9_uc001xml.2_Silent_p.P793P	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	779					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GCTCCTCCAGGGGAAGCAGCT	0.652													29	128					0	0	0.013726	0	0
PCNX	22990	broad.mit.edu	37	14	71443822	71443822	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:71443822C>T	uc001xmo.2	+	6	1214	c.768C>T	c.(766-768)TCC>TCT	p.S256S	PCNX_uc001xmn.3_Silent_p.S256S|PCNX_uc010are.1_Silent_p.S256S	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	256						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AGTCTCTGTCCAGCGCCTGTG	0.502													24	54					0	0	0.016522	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190486	72190486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:72190486C>T	uc001xms.2	+	16	4742	c.4394C>T	c.(4393-4395)TCC>TTC	p.S1465F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1444F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1444F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1465F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S919F|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S230F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1465	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		tcctcttcctcctcctcctcT	0.468													60	145					0	0	0.014410	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190579	72190579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:72190579C>T	uc001xms.2	+	16	4835	c.4487C>T	c.(4486-4488)TCC>TTC	p.S1496F	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S1475F|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S1496F|SIPA1L1_uc010ttm.1_Missense_Mutation_p.S950F|SIPA1L1_uc001xmw.2_Missense_Mutation_p.S261F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1496					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACCATAAACTCCGTGGGATTT	0.428													48	106					0	0	0.014410	0	0
NUMB	8650	broad.mit.edu	37	14	73751034	73751034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:73751034G>A	uc001xny.1	-	10	1024	c.704C>T	c.(703-705)ACT>ATT	p.T235I	NUMB_uc010aro.1_Intron|NUMB_uc010arp.1_Intron|NUMB_uc010arq.1_Intron|NUMB_uc010arr.1_Intron|NUMB_uc001xoa.1_Missense_Mutation_p.T235I|NUMB_uc001xnz.1_Missense_Mutation_p.T224I|NUMB_uc001xob.1_Missense_Mutation_p.T224I|NUMB_uc001xod.1_Missense_Mutation_p.T235I|NUMB_uc001xoc.1_Missense_Mutation_p.T235I|NUMB_uc010ars.1_Missense_Mutation_p.T224I|NUMB_uc001xof.1_Missense_Mutation_p.T199I|NUMB_uc001xog.2_Missense_Mutation_p.T221I|NUMB_uc010ttz.1_5'UTR	NM_001005743	NP_001005743	P49757	NUMB_HUMAN	numb homolog isoform 1	235					axon guidance|lateral ventricle development|neuroblast division in subventricular zone|positive regulation of neurogenesis	integral to plasma membrane				ovary(2)|central_nervous_system(1)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00471)|OV - Ovarian serous cystadenocarcinoma(108;0.161)		GGATGGGGCAGTGTTGCCAGG	0.478													70	155					0	0	0.014410	0	0
ACOT4	122970	broad.mit.edu	37	14	74062020	74062020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:74062020C>T	uc001xoo.2	+	3	1182	c.928C>T	c.(928-930)CCA>TCA	p.P310S		NM_152331	NP_689544	Q8N9L9	ACOT4_HUMAN	acyl-CoA thioesterase 4	310					acyl-CoA metabolic process|dicarboxylic acid metabolic process|long-chain fatty acid metabolic process|saturated monocarboxylic acid metabolic process|short-chain fatty acid metabolic process|succinyl-CoA metabolic process|unsaturated monocarboxylic acid metabolic process|very long-chain fatty acid metabolic process	peroxisome	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		CAGCATGATTCCAATAGAGAA	0.493													34	99					0	0	0.017118	0	0
C14orf115	55237	broad.mit.edu	37	14	74824495	74824495	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:74824495C>G	uc001xpw.3	+	2	1200	c.1009C>G	c.(1009-1011)CAG>GAG	p.Q337E		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	337					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GCAGTTCCTCCAGCGGTTCCC	0.667													46	134					0	0	0.014410	0	0
C14orf115	55237	broad.mit.edu	37	14	74825220	74825220	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:74825220G>A	uc001xpw.3	+	2	1925	c.1734G>A	c.(1732-1734)AAG>AAA	p.K578K		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	578					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		AGCAGGAGAAGGAGGCTGGCA	0.637													30	102					0	0	0.010818	0	0
TMEM90A	646658	broad.mit.edu	37	14	74876109	74876109	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:74876109C>T	uc001xpx.2	-	2	587	c.339G>A	c.(337-339)GAG>GAA	p.E113E		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	113					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		TGGTGACATTCTCTGCAGCTT	0.597													75	208					0	0	0.014410	0	0
LTBP2	4053	broad.mit.edu	37	14	75017892	75017893	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:75017892_75017893GG>AA	uc001xqa.2	-	7	1947_1948	c.1560_1561CC>TT	c.(1558-1563)GGCCAC>GGTTAC	p.H521Y		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	521					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CAGAGGCTGTGGCCAGGGCTGG	0.708													18	66					0	0	0.004672	0	0
YLPM1	56252	broad.mit.edu	37	14	75265731	75265731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:75265731G>A	uc001xqj.3	+	5	3855	c.3731G>A	c.(3730-3732)AGA>AAA	p.R1244K	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1049	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CTCTATAACAGAGAGGACAGG	0.493													10	34					0	0	0.008291	0	0
YLPM1	56252	broad.mit.edu	37	14	75276173	75276173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:75276173C>T	uc001xqj.3	+	7	4736	c.4612C>T	c.(4612-4614)CCT>TCT	p.P1538S	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Missense_Mutation_p.P21S	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1343					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		ATCATCTGTTCCTGTGACCAG	0.423													6	10					0	0	0.021553	0	0
PROX2	283571	broad.mit.edu	37	14	75329636	75329636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:75329636C>T	uc001xqr.1	-	1	902	c.902G>A	c.(901-903)GGA>GAA	p.G301E	PROX2_uc001xqq.1_Intron	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	301					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		TGATAAATTTCCTACTGGGAC	0.557													62	143					0	0	0.014410	0	0
TMEM63C	57156	broad.mit.edu	37	14	77710755	77710755	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:77710755C>T	uc001xtf.2	+	16	1617	c.1405C>T	c.(1405-1407)CTG>TTG	p.L469L	TMEM63C_uc010asq.1_Silent_p.L469L	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	469	Helical; (Potential).					integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GATACTGCCTCTGATTGTCTA	0.612													81	203					0	0	0.014410	0	0
TMEM63C	57156	broad.mit.edu	37	14	77722995	77722995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:77722995G>A	uc001xtf.2	+	24	2559	c.2347G>A	c.(2347-2349)GGC>AGC	p.G783S	TMEM63C_uc010asq.1_Missense_Mutation_p.G783S	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	783						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		TGGTCTGAGGGGCTTTGCGAG	0.622													78	192					0	0	0.014410	0	0
ADCK1	57143	broad.mit.edu	37	14	78353448	78353448	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:78353448C>T	uc001xui.2	+	5	537	c.438C>T	c.(436-438)TTC>TTT	p.F146F	ADCK1_uc010tvo.1_Intron|ADCK1_uc001xuj.2_Silent_p.F78F|ADCK1_uc001xuk.1_Silent_p.F20F	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	153						extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		ATGATTTGTTCCAGAGCTTCG	0.592													73	196					0	0	0.014410	0	0
C14orf145	145508	broad.mit.edu	37	14	81366325	81366325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:81366325G>A	uc001xux.2	-	6	700	c.529C>T	c.(529-531)CGC>TGC	p.R177C	C14orf145_uc001xuz.2_Missense_Mutation_p.R177C|C14orf145_uc001xva.1_Missense_Mutation_p.R177C|C14orf145_uc001xuy.1_Missense_Mutation_p.R35C	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	177						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TCTCCAAGGCGAATTTGTTCA	0.408													50	162					0	0	0.014410	0	0
GALC	2581	broad.mit.edu	37	14	88448555	88448555	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:88448555A>T	uc001xvt.2	-	6	1014	c.615T>A	c.(613-615)TAT>TAA	p.Y205*	GALC_uc010tvw.1_5'Flank|GALC_uc010tvx.1_Nonsense_Mutation_p.Y179*|GALC_uc010tvy.1_Nonsense_Mutation_p.Y182*|GALC_uc010tvz.1_Nonsense_Mutation_p.Y149*|GALC_uc001xvu.1_Nonsense_Mutation_p.Y205*	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	205					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						ACACCTTAATATAATTGGCAT	0.289													23	41					0	0	0.024334	0	0
PTPN21	11099	broad.mit.edu	37	14	88945806	88945806	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:88945806G>A	uc001xwv.3	-	13	2300	c.1969C>T	c.(1969-1971)CTA>TTA	p.L657L	PTPN21_uc010twc.1_Silent_p.L453L	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	657						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GACGCGGATAGGGTGCGCTCC	0.721													14	36					0	0	0.016723	0	0
TC2N	123036	broad.mit.edu	37	14	92251508	92251509	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:92251508_92251509GG>AA	uc001xzu.3	-	11	1550_1551	c.1359_1360CC>TT	c.(1357-1362)GGCCAG>GGTTAG	p.Q454*	TC2N_uc001xzt.3_Nonsense_Mutation_p.Q454*|TC2N_uc010auc.2_Nonsense_Mutation_p.Q390*|TC2N_uc001xzv.3_Nonsense_Mutation_p.Q454*	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	454	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CTACTAACCTGGCCCACAAAGT	0.322													25	86					0	0	0.004672	0	0
SLC24A4	123041	broad.mit.edu	37	14	92953042	92953042	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:92953042G>A	uc001yak.2	+	14	1428	c.1404G>A	c.(1402-1404)CCG>CCA	p.P468P	SLC24A4_uc001yai.2_Silent_p.P421P|SLC24A4_uc010twm.1_Silent_p.P466P|SLC24A4_uc001yaj.2_Silent_p.P449P|SLC24A4_uc010auj.2_Silent_p.P357P|SLC24A4_uc010twn.1_Silent_p.P241P|SLC24A4_uc001yan.2_Silent_p.P179P	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	485	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TTGGGATCCCGGATGTCATCA	0.488													20	47					0	0	0.016522	0	0
MOAP1	64112	broad.mit.edu	37	14	93649576	93649576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:93649576C>T	uc001ybj.2	-	3	1382	c.1012G>A	c.(1012-1014)GAG>AAG	p.E338K	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	338					activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		AGGGCCTcctcctcctcagct	0.229													57	116					0	0	0.014410	0	0
COX8C	341947	broad.mit.edu	37	14	93814420	93814420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:93814420C>T	uc001ybt.1	+	2	251	c.173C>T	c.(172-174)CCA>CTA	p.P58L	KIAA1409_uc001ybs.1_Intron	NM_182971	NP_892016	Q7Z4L0	COX8C_HUMAN	cytochrome c oxidase subunit VIIIc	58	Helical; (By similarity).					integral to membrane|mitochondrial inner membrane	cytochrome-c oxidase activity				0		all_cancers(154;0.083)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		TTCTTAACACCAGCTGCATAT	0.443													36	120					0	0	0.021022	0	0
KIAA1409	57578	broad.mit.edu	37	14	94067104	94067104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94067104C>T	uc001ybv.1	+	22	3114	c.3031C>T	c.(3031-3033)CCT>TCT	p.P1011S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P1011S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1188						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CAAGGAATTTCCTTTTCCTAC	0.403													17	52					0	0	0.007413	0	0
KIAA1409	57578	broad.mit.edu	37	14	94089029	94089029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94089029G>A	uc001ybv.1	+	28	5068	c.4985G>A	c.(4984-4986)AGG>AAG	p.R1662K	KIAA1409_uc001ybs.1_Missense_Mutation_p.R1640K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1817						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AATCCTGAAAGGAAGGTGGAA	0.473													9	39					0	0	0.004482	0	0
FAM181A	90050	broad.mit.edu	37	14	94394861	94394861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94394861G>A	uc001ybz.1	+	3	723	c.416G>A	c.(415-417)AGG>AAG	p.R139K	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.R77K|FAM181A_uc001yca.1_Missense_Mutation_p.R77K	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	139											0						GACCGGCCCAGGAGGCTGCTC	0.647													27	60					0	0	0.006320	0	0
FAM181A	90050	broad.mit.edu	37	14	94395286	94395286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94395286C>T	uc001ybz.1	+	3	1148	c.841C>T	c.(841-843)CAT>TAT	p.H281Y	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.H219Y|FAM181A_uc001yca.1_Missense_Mutation_p.H219Y	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	281											0						CTTCCAGTACCATGGACAGCC	0.647													18	51					0	0	0.004990	0	0
PPP4R4	57718	broad.mit.edu	37	14	94718122	94718122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94718122G>A	uc001ycs.1	+	16	1908	c.1754G>A	c.(1753-1755)CGA>CAA	p.R585Q		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	585						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AATAGACTTCGATTTTTGGAT	0.279													20	45					0	0	0.010504	0	0
PPP4R4	57718	broad.mit.edu	37	14	94741824	94741824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94741824G>A	uc001ycs.1	+	24	2717	c.2563G>A	c.(2563-2565)GGA>AGA	p.G855R		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	855						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						CAAGAGCAGTGGAAGTAAAGA	0.453													30	76					0	0	0.007291	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935600	94935600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:94935600C>T	uc001ydf.2	-	2	793	c.632G>A	c.(631-633)GGC>GAC	p.G211D	SERPINA9_uc001yde.2_Missense_Mutation_p.G111D|SERPINA9_uc010avc.2_Missense_Mutation_p.G62D|SERPINA9_uc001ydg.2_Missense_Mutation_p.G175D|SERPINA9_uc001ydh.1_Missense_Mutation_p.G211D|SERPINA9_uc001ydi.1_Missense_Mutation_p.G175D	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	193					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		AAGGTCAAGGCCTTGGATTAT	0.408													83	247					0	0	0.014410	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030088	95030088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:95030088C>T	uc001ydk.2	+	2	335	c.269C>T	c.(268-270)TCC>TTC	p.S90F	SERPINA4_uc010avd.2_Missense_Mutation_p.S127F|SERPINA4_uc001ydl.2_Missense_Mutation_p.S90F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	90					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GCCATGCTTTCCCTGGGGGCC	0.607													22	65					0	0	0.010504	0	0
SERPINA3	12	broad.mit.edu	37	14	95081394	95081394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:95081394G>A	uc001ydp.2	+	2	695	c.616G>A	c.(616-618)GTC>ATC	p.V206I	SERPINA3_uc001ydo.3_Missense_Mutation_p.V231I|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.V206I|SERPINA3_uc001yds.2_Missense_Mutation_p.V206I|SERPINA3_uc010avg.2_Missense_Mutation_p.V206I	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	206					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GACAATGATGGTCCTGGTGAA	0.478													56	161					0	0	0.014410	0	0
TCL6	27004	broad.mit.edu	37	14	96137710	96137710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:96137710C>T	uc001yeq.2	+	7	1906	c.437C>T	c.(436-438)TCG>TTG	p.S146L	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Missense_Mutation_p.S88L|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_3'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		ctgtctcattcgcctctggat	0.065			T	TRA@	T-ALL								15	48					0	0	0.010504	0	0
C14orf177	283598	broad.mit.edu	37	14	99183489	99183489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:99183489G>A	uc001yfz.1	+	4	675	c.256G>A	c.(256-258)GAA>AAA	p.E86K		NM_182560	NP_872366	Q52M58	CN177_HUMAN	hypothetical protein LOC283598	86											0		Melanoma(154;0.128)				GAGACATGAAGAAACTTCTCC	0.448													36	78					0	0	0.021022	0	0
BCL11B	64919	broad.mit.edu	37	14	99641457	99641457	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:99641457C>T	uc001yga.2	-	4	1983	c.1716G>A	c.(1714-1716)GGG>GGA	p.G572G	BCL11B_uc001ygb.2_Silent_p.G501G	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	572	Gly-rich.					nucleus	zinc ion binding	p.G643G(1)		central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		ccccgggcACCCCACCACCGC	0.502			T	TLX3	T-ALL								10	37					0	0	0.008291	0	0
CYP46A1	10858	broad.mit.edu	37	14	100188396	100188396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:100188396C>T	uc001ygo.2	+	12	1169	c.1169C>T	c.(1168-1170)CCG>CTG	p.P390L	CYP46A1_uc001ygp.2_Intron	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	390					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GGCAACACCCCGCTCTTGGTG	0.637													33	78					0	0	0.013726	0	0
C14orf68	283600	broad.mit.edu	37	14	100795908	100795908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:100795908G>A	uc001yhc.2	+	6	926	c.853G>A	c.(853-855)GCC>ACC	p.A285T	C14orf68_uc001yhd.2_Missense_Mutation_p.A139T	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	285	Helical; Name=6; (Potential).|Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				TTGCTGCCGCGCCTTCCCTGT	0.652													99	187					0	0	0.014410	0	0
DLK1	8788	broad.mit.edu	37	14	101201152	101201152	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:101201152G>A	uc001yhs.3	+	5	1224	c.1071G>A	c.(1069-1071)GAG>GAA	p.E357E	DLK1_uc001yhu.3_Silent_p.E284E	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	357	Cytoplasmic (Potential).				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				ACAGCGGGGAGGACCTGGCCG	0.577													57	151					0	0	0.014410	0	0
MIR493	574450	broad.mit.edu	37	14	101335434	101335434	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:101335434C>T	hsa-mir-493|MI0003132	+			c.38C>T																				0						GGCTttcattcattcgtttgc	0.418													58	170					0	0	0.014410	0	0
RTL1	388015	broad.mit.edu	37	14	101349367	101349367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:101349367G>A	uc010txj.1	-	1	1818	c.1759C>T	c.(1759-1761)CTT>TTT	p.L587F	uc001yig.3_RNA|MIR127_hsa-mir-127|MI0000472_RNA|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	587										pancreas(1)	1						GATTCAGAAAGATCATCGGAT	0.567													35	96					0	0	0.025465	0	0
SNORD114-6	767582	broad.mit.edu	37	14	101423559	101423559	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:101423559G>A	uc001yiw.2	+	1		c.57G>A				NR_003198				Homo sapiens small nucleolar RNA, C/D box 114-6 (SNORD114-6), non-coding RNA.												0						TATATGTCTGGAACTCTGAGG	0.333													5	30					0	0	0.001984	0	0
MIR541	100126308	broad.mit.edu	37	14	101530900	101530900	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:101530900C>T	hsa-mir-541|MI0005539	+			c.69C>T			MIR409_hsa-mir-409|MI0001735_5'Flank|MIR412_hsa-mir-412|MI0002464_5'Flank|uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						GGCACAGAATCTGGACTCTGC	0.592													31	87					0	0	0.015359	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414780	105414780	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:105414780G>A	uc010axc.1	-	7	7128	c.7008C>T	c.(7006-7008)TCC>TCT	p.S2336S	AHNAK2_uc001ypx.2_Silent_p.S2236S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2336						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AGGCCTCGATGGACTTGCCAA	0.582													79	455					0	0	0.014410	0	0
JAG2	3714	broad.mit.edu	37	14	105612287	105612287	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:105612287A>G	uc001yqg.2	-	23	3137	c.2733T>C	c.(2731-2733)TGT>TGC	p.C911C	JAG2_uc010axf.2_5'UTR|JAG2_uc001yqf.2_Silent_p.C315C|JAG2_uc001yqh.2_Silent_p.C873C	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	911	Extracellular (Potential).|VWFC.				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CGGCCAGCAGACAAGGCTTCC	0.677													4	12					0	0	0.001984	0	0
JAG2	3714	broad.mit.edu	37	14	105615171	105615171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:105615171G>A	uc001yqg.2	-	15	2335	c.1931C>T	c.(1930-1932)CCC>CTC	p.P644L	JAG2_uc010axf.2_5'Flank|JAG2_uc001yqf.2_Missense_Mutation_p.P48L|JAG2_uc001yqh.2_Missense_Mutation_p.P606L	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	644	EGF-like 11; calcium-binding (Potential).|Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		ATTGCGGCAGGGCTGGCCCAG	0.692													5	16					0	0	0.021553	0	0
ADAM6	8755	broad.mit.edu	37	14	106236177	106236177	+	RNA	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106236177C>A	uc010tyt.1	-	3616		c.57767G>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TCCACGCCGTCCACGTACCAC	0.602													109	279					9.91269e-35	1.01318e-34	0.014410	1	0
ADAM6	8755	broad.mit.edu	37	14	106321847	106321847	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106321847C>T	uc010tyt.1	-	3599		c.55549G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TGAGCTTGGACTTGCGGGGGT	0.657													25	55					0	0	0.021523	0	0
ADAM6	8755	broad.mit.edu	37	14	106452934	106452934	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106452934C>T	uc010tyt.1	-	1975		c.37822G>A								Parts of antibodies, mostly variable regions.												0						GGCTTCTTCACCTCAGCCCCA	0.577													48	113					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106725369	106725369	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106725369C>T	uc010tyt.1	-	588		c.18178G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.582													84	358					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106791110	106791110	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106791110G>A	uc010tyt.1	-	386		c.14508C>T								Parts of antibodies, mostly variable regions.												0						GGCCCTTCACGGAGTCTGCAT	0.507													102	447					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106805291	106805291	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106805291G>A	uc010tyt.1	-	360		c.13917C>T			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						CGTGTCTACTGATATGGTAAC	0.547													92	570					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106967099	106967099	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:106967099C>T	uc010tyt.1	-	201		c.9342G>A								Parts of antibodies, mostly variable regions.												0						CTGCTCAGCTCCATGTAGACT	0.542													108	286					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	107170360	107170360	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:107170360C>T	uc010tyt.1	-	37		c.2509G>A								Parts of antibodies, mostly variable regions.												0						CCTCCAGGTCCAGTCCATGGT	0.483													21	71					0	0	0.018920	0	0
OR4M2	390538	broad.mit.edu	37	15	22368579	22368579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:22368579G>A	uc010tzu.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGAAGAAATGGAAACTGCAAA	0.328													24	101					0	0	0.021523	0	0
GOLGA8DP	100132979	broad.mit.edu	37	15	22709708	22709708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:22709708G>A	uc010axw.2	-	10	1077	c.179C>T	c.(178-180)TCG>TTG	p.S60L	GOLGA8DP_uc010axx.2_Missense_Mutation_p.S60L|uc010tzw.1_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E												0						CTTCTTCAACGAGCAAACCTG	0.547													97	217					0	0	0.014410	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22864315	22864315	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:22864315T>C	uc001yur.3	+	16	2403	c.2273T>C	c.(2272-2274)CTT>CCT	p.L758P	TUBGCP5_uc001yuq.2_Missense_Mutation_p.L758P	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	758					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		GTGTCTTTTCTTAATGTCCAA	0.343													47	109					0	0	0.011902	0	0
NDN	4692	broad.mit.edu	37	15	23932165	23932166	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:23932165_23932166GG>AA	uc001ywk.2	-	1	285_286	c.199_200CC>TT	c.(199-201)CCG>TTG	p.P67L		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	67					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		CAGGGCCTTCGGGTCGCCCTCG	0.802									Prader-Willi_syndrome				3	6					0	0	0.004672	0	0
C15orf2	23742	broad.mit.edu	37	15	24921299	24921299	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:24921299G>A	uc001ywo.2	+	1	759	c.285G>A	c.(283-285)AGG>AGA	p.R95R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	95					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGGCCATCAGGAAGACACCCA	0.667													17	51					0	0	0.008871	0	0
C15orf2	23742	broad.mit.edu	37	15	24921462	24921462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:24921462G>A	uc001ywo.2	+	1	922	c.448G>A	c.(448-450)GAG>AAG	p.E150K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	150					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGAGGAGACCGAGGTGTGGGC	0.627													27	71					0	0	0.010818	0	0
C15orf2	23742	broad.mit.edu	37	15	24923385	24923385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:24923385G>A	uc001ywo.2	+	1	2845	c.2371G>A	c.(2371-2373)GAT>AAT	p.D791N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	791					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGTGCCCATGATTTCCTGAG	0.537													115	309					0	0	0.014410	0	0
PAR4	347745	broad.mit.edu	37	15	25453081	25453081	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:25453081G>A	uc001yzk.1	+	12		c.1649G>A			PAR4_uc010ayo.1_Intron|SNORD115-20_uc001yzq.1_Intron|SNORD115-22_uc001yzr.1_5'Flank					Homo sapiens clone Rt-13I SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						GGGCCCAATGGAGCTGGGCCA	0.597													20	47					0	0	0.007413	0	0
OCA2	4948	broad.mit.edu	37	15	28096618	28096618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:28096618G>A	uc001zbh.3	-	22	2358	c.2248C>T	c.(2248-2250)CCC>TCC	p.P750S	OCA2_uc010ayv.2_Missense_Mutation_p.P726S	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	750	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		AGGAGCACGGGAATCTGTGGA	0.567									Oculocutaneous_Albinism				9	23					0	0	0.004482	0	0
HERC2	8924	broad.mit.edu	37	15	28420712	28420712	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:28420712G>A	uc001zbj.2	-	64	9883	c.9777C>T	c.(9775-9777)ATC>ATT	p.I3259I		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3259	RCC1 11.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCACATGCACGATCTTCTTCC	0.637													24	49					0	0	0.007291	0	0
HERC2	8924	broad.mit.edu	37	15	28458946	28458946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:28458946G>A	uc001zbj.2	-	42	6834	c.6728C>T	c.(6727-6729)ACC>ATC	p.T2243I		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2243					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GAACTGCACGGTGATTTTGCC	0.512													33	139					0	0	0.027894	0	0
Unknown	0	broad.mit.edu	37	15	28600110	28600110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:28600110C>T	uc010uaf.1	-	3	238	c.220G>A	c.(220-222)GAG>AAG	p.E74K						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		ACCTCTAGCTCCCTCCTTAGG	0.512													11	70					0	0	0.013537	0	0
MTMR15	22909	broad.mit.edu	37	15	31196961	31196961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:31196961C>T	uc001zff.2	+	2	386	c.95C>T	c.(94-96)TCG>TTG	p.S32L	MTMR15_uc001zfc.3_Missense_Mutation_p.S32L|MTMR15_uc010azw.2_Missense_Mutation_p.S32L|MTMR15_uc001zfd.3_Missense_Mutation_p.S32L|MTMR15_uc001zfe.2_5'UTR	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	32					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		TCTATTATTTCGTGTTTTAAC	0.398								Direct_reversal_of_damage|Editing_and_processing_nucleases					50	115					0	0	0.014410	0	0
ARHGAP11A	9824	broad.mit.edu	37	15	32926166	32926166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:32926166C>T	uc001zgy.1	+	10	1990	c.1268C>T	c.(1267-1269)CCT>CTT	p.P423L	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.P234L|ARHGAP11A_uc001zgw.2_Missense_Mutation_p.P423L|ARHGAP11A_uc001zgx.2_Missense_Mutation_p.P395L|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.P234L	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	423					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		TGCTTTTCTCCTAAAATCAGC	0.338													6	26					0	0	0.001984	0	0
RYR3	6263	broad.mit.edu	37	15	33928595	33928595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:33928595G>A	uc001zhi.2	+	27	3470	c.3400G>A	c.(3400-3402)GGA>AGA	p.G1134R	RYR3_uc010bar.2_Missense_Mutation_p.G1134R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1134	B30.2/SPRY 2.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGGCATCAAGGAAGTGGGTA	0.493													61	179					0	0	0.014410	0	0
RYR3	6263	broad.mit.edu	37	15	33988477	33988477	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:33988477C>T	uc001zhi.2	+	39	5989	c.5919C>T	c.(5917-5919)ATC>ATT	p.I1973I	RYR3_uc010bar.2_Silent_p.I1973I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1973	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGGACCAGATCCAGGATTCAG	0.562													21	74					0	0	0.008871	0	0
RYR3	6263	broad.mit.edu	37	15	34015064	34015064	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:34015064C>T	uc001zhi.2	+	44	6838	c.6768C>T	c.(6766-6768)CTC>CTT	p.L2256L	RYR3_uc010bar.2_Silent_p.L2256L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2256	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACCCAGCGCTCGACCTCCCCT	0.562													61	174					0	0	0.014410	0	0
RYR3	6263	broad.mit.edu	37	15	34137075	34137075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:34137075C>T	uc001zhi.2	+	93	13379	c.13309C>T	c.(13309-13311)CCT>TCT	p.P4437S	RYR3_uc010bar.2_Missense_Mutation_p.P4432S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4437					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CACTGAAGAACCTTTAGAAGA	0.413													10	28					0	0	0.008291	0	0
SLC12A6	9990	broad.mit.edu	37	15	34546760	34546760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:34546760G>A	uc001zhw.2	-	8	1071	c.907C>T	c.(907-909)CAC>TAC	p.H303Y	SLC12A6_uc001zhv.2_Missense_Mutation_p.H252Y|SLC12A6_uc001zhx.2_Missense_Mutation_p.H288Y|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.H244Y|SLC12A6_uc001zib.2_Missense_Mutation_p.H294Y|SLC12A6_uc001zic.2_Missense_Mutation_p.H303Y|SLC12A6_uc010bau.2_Missense_Mutation_p.H303Y|SLC12A6_uc001zid.2_Missense_Mutation_p.H244Y|SLC12A6_uc001zhu.2_Missense_Mutation_p.H115Y	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	303	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	TCATCACTGTGAAAGATGGCA	0.393													37	80					0	0	0.027894	0	0
C15orf55	256646	broad.mit.edu	37	15	34645943	34645943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:34645943G>A	uc001zif.2	+	4	1016	c.861G>A	c.(859-861)ATG>ATA	p.M287I	C15orf55_uc010ucc.1_Missense_Mutation_p.M315I|C15orf55_uc010ucd.1_Missense_Mutation_p.M305I	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	287						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GCAGGTTCATGGAGTTTGAGG	0.517			T	BRD3|BRD4	lethal midline carcinoma								25	94					0	0	0.018920	0	0
LPCAT4	254531	broad.mit.edu	37	15	34652410	34652410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:34652410C>T	uc001zig.2	-	12	1238	c.1144G>A	c.(1144-1146)GAT>AAT	p.D382N		NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	382					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						CCCTTGGTATCCTGGTGTGAA	0.557													33	78					0	0	0.012213	0	0
ACTC1	70	broad.mit.edu	37	15	35085666	35085666	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:35085666G>A	uc001ziu.1	-	3	477	c.234C>T	c.(232-234)ATC>ATT	p.I78I	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	78					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CCCAGTTGGTGATGATACCAT	0.567													47	126					0	0	0.014410	0	0
ATPBD4	89978	broad.mit.edu	37	15	35742939	35742939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:35742939C>T	uc001zja.2	-	5	514	c.452G>A	c.(451-453)AGA>AAA	p.R151K	ATPBD4_uc001ziz.2_Missense_Mutation_p.R135K	NM_080650	NP_542381	Q7L8W6	ATBD4_HUMAN	ATP binding domain 4 isoform 1	151											0		all_epithelial(112;2.11e-09)|Lung NSC(122;2.38e-08)|all_lung(180;3.65e-07)		all cancers(64;9.9e-19)|GBM - Glioblastoma multiforme(113;2.01e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		TATCATCTCTCTGAGCAAATC	0.388													56	144					0	0	0.014410	0	0
MEIS2	4212	broad.mit.edu	37	15	37329079	37329079	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:37329079T>C	uc001zjr.2	-	8	1873	c.836A>G	c.(835-837)AAA>AGA	p.K279R	MEIS2_uc001zjl.2_Missense_Mutation_p.K266R|MEIS2_uc010ucj.1_Missense_Mutation_p.K266R|MEIS2_uc001zjm.2_Missense_Mutation_p.K191R|MEIS2_uc001zjn.2_Missense_Mutation_p.K133R|MEIS2_uc001zjo.2_Missense_Mutation_p.K279R|MEIS2_uc001zjp.2_Missense_Mutation_p.K279R|MEIS2_uc001zjs.2_Missense_Mutation_p.K279R|MEIS2_uc001zju.2_Missense_Mutation_p.K266R|MEIS2_uc001zjt.2_Missense_Mutation_p.K279R	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	279	Homeobox; TALE-type.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		AATGCCTCTTTTCTTCTGGCG	0.388													33	83					0	0	0.013726	0	0
THBS1	7057	broad.mit.edu	37	15	39881440	39881440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:39881440G>A	uc001zkh.2	+	12	1990	c.1811G>A	c.(1810-1812)GGA>GAA	p.G604E	THBS1_uc010bbi.2_Missense_Mutation_p.G76E	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	604	EGF-like 2; calcium-binding (Potential).				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AACCACAATGGAGAGCACCGG	0.572													86	181					0	0	0.014410	0	0
IVD	3712	broad.mit.edu	37	15	40710397	40710397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:40710397G>A	uc001zls.3	+	12	1550	c.1216G>A	c.(1216-1218)GGG>AGG	p.G406R	IVD_uc001zlq.2_Missense_Mutation_p.G376R|IVD_uc001zlr.2_Missense_Mutation_p.G109R	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	403					leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		GTATGAGATAGGGGCTGGGAC	0.557													45	120					0	0	0.013114	0	0
IVD	3712	broad.mit.edu	37	15	40710429	40710429	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:40710429C>T	uc001zls.3	+	12	1582	c.1248C>T	c.(1246-1248)GTC>GTT	p.V416V	IVD_uc001zlq.2_Silent_p.V386V|IVD_uc001zlr.2_Silent_p.V119V	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	413					leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		GGCGGCTGGTCATCGGCAGAG	0.562													45	138					0	0	0.014410	0	0
BAHD1	22893	broad.mit.edu	37	15	40750911	40750911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:40750911C>T	uc001zlu.2	+	2	319	c.248C>T	c.(247-249)CCC>CTC	p.P83L	BAHD1_uc001zlt.2_Missense_Mutation_p.P83L|BAHD1_uc010bbp.1_Missense_Mutation_p.P83L|BAHD1_uc001zlv.2_Missense_Mutation_p.P83L	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	83					heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		GTGGCCGGTCCCCGGAGTGCA	0.647													34	110					0	0	0.015359	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42113890	42113890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:42113890C>T	uc001zok.3	+	25	3131	c.2845C>T	c.(2845-2847)CCC>TCC	p.P949S	MAPKBP1_uc001zoj.3_Missense_Mutation_p.P943S|MAPKBP1_uc010bcj.2_Missense_Mutation_p.P450S|MAPKBP1_uc010bci.2_Missense_Mutation_p.P943S|MAPKBP1_uc010udb.1_Missense_Mutation_p.P782S|MAPKBP1_uc010bck.2_Missense_Mutation_p.P160S|MAPKBP1_uc010bcl.2_Missense_Mutation_p.P450S	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	949										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GGAACCTGCACCCATTGAAGA	0.567													62	138					0	0	0.014410	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42114441	42114441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:42114441C>T	uc001zok.3	+	27	3354	c.3068C>T	c.(3067-3069)CCC>CTC	p.P1023L	MAPKBP1_uc001zoj.3_Missense_Mutation_p.P1017L|MAPKBP1_uc010bcj.2_Missense_Mutation_p.P524L|MAPKBP1_uc010bci.2_Missense_Mutation_p.P1017L|MAPKBP1_uc010udb.1_Missense_Mutation_p.P856L|MAPKBP1_uc010bck.2_Missense_Mutation_p.P234L|MAPKBP1_uc010bcl.2_Missense_Mutation_p.P524L	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	1023										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		AGCACGGAGCCCCTCAGTGTG	0.627													27	75					0	0	0.007291	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42302335	42302335	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:42302335C>T	uc001zow.1	-	1	111	c.111G>A	c.(109-111)GGG>GGA	p.G37G		NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	Error:Variant_position_missing_in_Q3MJ16_after_alignment					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CACTGGCCCCCCCACCCCGGG	0.592													44	90					0	0	0.011902	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42374582	42374582	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:42374582G>A	uc001zox.2	-	9	773	c.678C>T	c.(676-678)TCC>TCT	p.S226S		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	226					phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CATTGCTTCTGGAGCTCTGAA	0.443													38	81					0	0	0.023175	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42438057	42438057	+	Missense_Mutation	SNP	C	T	T	rs144729400		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:42438057C>T	uc001zoz.2	-	15	1642	c.1579G>A	c.(1579-1581)GGG>AGG	p.G527R	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Missense_Mutation_p.G159R|PLA2G4F_uc010bcr.2_Missense_Mutation_p.G278R|PLA2G4F_uc001zpa.2_Missense_Mutation_p.G278R|PLA2G4F_uc010bcs.2_Missense_Mutation_p.G314R	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	527	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		ACATAAGCCCCGTACTTGGGG	0.592													47	122					0	0	0.014410	0	0
UBR1	197131	broad.mit.edu	37	15	43339380	43339380	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43339380G>A	uc001zqq.2	-	14	1713	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	UBR1_uc010udk.1_Silent_p.F549F	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	549					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		ACCACTCTTGGAACATGAGTA	0.363													68	179					0	0	0.014410	0	0
TGM7	116179	broad.mit.edu	37	15	43574732	43574732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43574732G>A	uc001zrf.1	-	8	1096	c.1091C>T	c.(1090-1092)CCC>CTC	p.P364L		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	364					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GGTCTGCTGGGGAGTGGGGTC	0.597													5	10					0	0	0.021553	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43670060	43670060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43670060C>T	uc001zro.2	+	5	640	c.400C>T	c.(400-402)CCC>TCC	p.P134S	TUBGCP4_uc001zrn.2_Missense_Mutation_p.P134S|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	134					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		GCTTCTTTTTCCCTCTGTGAT	0.323													44	147					0	0	0.014410	0	0
TP53BP1	7158	broad.mit.edu	37	15	43749146	43749146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43749146C>T	uc001zrs.2	-	12	1793	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	TP53BP1_uc010udp.1_Missense_Mutation_p.E549K|TP53BP1_uc001zrq.3_Missense_Mutation_p.E554K|TP53BP1_uc001zrr.3_Missense_Mutation_p.E554K|TP53BP1_uc010udq.1_Missense_Mutation_p.E554K	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	549					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GACATGGGTTCCGTATCCTCA	0.408								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					38	84					0	0	0.019004	0	0
MAP1A	4130	broad.mit.edu	37	15	43816735	43816735	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43816735C>T	uc001zrt.2	+	4	3531	c.3064C>T	c.(3064-3066)CAA>TAA	p.Q1022*		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1022						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GTCTGAGCCCCAAGACTTTCA	0.567													30	97					0	0	0.009535	0	0
MAP1A	4130	broad.mit.edu	37	15	43820746	43820746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:43820746G>A	uc001zrt.2	+	4	7542	c.7075G>A	c.(7075-7077)GCC>ACC	p.A2359T		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2359						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GGATTGTGCAGCCAATGGCCC	0.632													25	85					0	0	0.024334	0	0
SPG11	80208	broad.mit.edu	37	15	44887479	44887479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:44887479C>T	uc001ztx.2	-	26	4644	c.4613G>A	c.(4612-4614)AGA>AAA	p.R1538K	SPG11_uc010ueh.1_Missense_Mutation_p.R1538K|SPG11_uc010uei.1_Missense_Mutation_p.R1538K|SPG11_uc001zty.1_Missense_Mutation_p.R267K	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1538	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		CTGGAAACCTCTGATGAGAGT	0.393													27	89					0	0	0.006320	0	0
DUOXA2	405753	broad.mit.edu	37	15	45409340	45409340	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:45409340C>T	uc001zuo.2	+	5	886	c.606C>T	c.(604-606)GCC>GCT	p.A202A	DUOX2_uc010bea.2_5'Flank|DUOX2_uc001zun.2_5'Flank|DUOXA2_uc010beb.2_RNA	NM_207581	NP_997464	Q1HG44	DOXA2_HUMAN	dual oxidase activator 2	202	Helical; (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane					0		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;2.88e-18)|GBM - Glioblastoma multiforme(94;3.95e-07)|COAD - Colon adenocarcinoma(120;0.0652)|Colorectal(133;0.0659)		CCACGCCGGCCCCGCTCTACG	0.701													11	29					0	0	0.010729	0	0
DUOX1	53905	broad.mit.edu	37	15	45440472	45440472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:45440472C>T	uc001zus.1	+	22	2991	c.2645C>T	c.(2644-2646)TCC>TTC	p.S882F	DUOX1_uc001zut.1_Missense_Mutation_p.S882F|DUOX1_uc010bee.1_Missense_Mutation_p.S262F|DUOX1_uc001zuu.2_Missense_Mutation_p.S24F	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	882	EF-hand 2.|Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		AACCCCAGATCCTTCATCGAG	0.602													26	71					0	0	0.021523	0	0
SQRDL	58472	broad.mit.edu	37	15	45974710	45974710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:45974710C>T	uc001zvt.2	+	8	1088	c.899C>T	c.(898-900)CCA>CTA	p.P300L	SQRDL_uc001zvu.2_Missense_Mutation_p.P300L|SQRDL_uc001zvv.2_Missense_Mutation_p.P300L	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	300							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		CCAATGAGCCCACCAGATGTC	0.458													26	61					0	0	0.027356	0	0
SLC12A1	6557	broad.mit.edu	37	15	48537004	48537004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:48537004G>A	uc001zwn.3	+	11	1571	c.1355G>A	c.(1354-1356)GGG>GAG	p.G452E	SLC12A1_uc010uew.1_Missense_Mutation_p.G258E|SLC12A1_uc010bem.2_Missense_Mutation_p.G452E|SLC12A1_uc001zwq.3_Missense_Mutation_p.G223E|SLC12A1_uc001zwr.3_Missense_Mutation_p.G179E	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	452					potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	ATCATTTCTGGGATGAACTGC	0.478													16	52					0	0	0.028581	0	0
FBN1	2200	broad.mit.edu	37	15	48738928	48738928	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:48738928G>A	uc001zwx.1	-	47	6091	c.5763C>T	c.(5761-5763)ATC>ATT	p.I1921I	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1921	EGF-like 32; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGTGAGAAAGGATGAAACCAT	0.408													22	44					0	0	0.016522	0	0
C15orf33	196951	broad.mit.edu	37	15	49869031	49869031	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:49869031G>A	uc001zxl.2	-	7	747	c.453C>T	c.(451-453)TTC>TTT	p.F151F	C15orf33_uc001zxm.2_Silent_p.F151F	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	151										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TGAATCCTGTGAAGCTGCAAC	0.328													9	24					0	0	0.008291	0	0
ATP8B4	79895	broad.mit.edu	37	15	50190413	50190413	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:50190413G>A	uc001zxu.2	-	22	2467	c.2325C>T	c.(2323-2325)CTC>CTT	p.L775L	ATP8B4_uc010ber.2_Silent_p.L648L|ATP8B4_uc010ufd.1_Silent_p.L585L|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxv.1_Silent_p.L73L	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	775	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CAAGTTCTAGGAGATCATTCT	0.403													9	34					0	0	0.004482	0	0
HDC	3067	broad.mit.edu	37	15	50546362	50546362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:50546362C>T	uc001zxz.2	-	6	791	c.685G>A	c.(685-687)GAG>AAG	p.E229K	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Missense_Mutation_p.E229K|HDC_uc010bet.1_Missense_Mutation_p.E150K|HDC_uc010beu.1_Missense_Mutation_p.E229K	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	229					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TTGTCTTCCTCGATGGCCTTC	0.473													35	87					0	0	0.017118	0	0
TRPM7	54822	broad.mit.edu	37	15	50886692	50886692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:50886692G>A	uc001zyt.3	-	24	3673	c.3409C>T	c.(3409-3411)CAT>TAT	p.H1137Y	TRPM7_uc010bew.1_Missense_Mutation_p.H1137Y	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1137	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		GAAACTATATGGCTAAGAATG	0.348													49	133					0	0	0.014410	0	0
AP4E1	23431	broad.mit.edu	37	15	51285609	51285609	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:51285609G>A	uc001zyx.1	+	17	2163	c.2133G>A	c.(2131-2133)GGG>GGA	p.G711G		NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	711					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		AATTGTGGGGGAAAGAAGGCT	0.378													20	35					0	0	0.010504	0	0
DMXL2	23312	broad.mit.edu	37	15	51741329	51741329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:51741329G>A	uc002abf.2	-	43	9188	c.8963C>T	c.(8962-8964)TCC>TTC	p.S2988F	DMXL2_uc002abd.2_Missense_Mutation_p.S1080F|DMXL2_uc010ufy.1_Missense_Mutation_p.S2989F|DMXL2_uc010bfa.2_Missense_Mutation_p.S2352F|DMXL2_uc002abc.2_RNA	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2988						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCGAAATATGGACTGCTTAGC	0.428													24	82					0	0	0.018920	0	0
TMOD3	29766	broad.mit.edu	37	15	52194155	52194155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:52194155C>T	uc002abm.2	+	9	1165	c.946C>T	c.(946-948)CTT>TTT	p.L316F	TMOD3_uc010bfc.1_RNA	NM_014547	NP_055362	Q9NYL9	TMOD3_HUMAN	tropomodulin 3 (ubiquitous)	316						cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1				all cancers(107;0.00194)		TACAAATATCCTTAAATTTGG	0.368													32	70					0	0	0.012213	0	0
MYO5C	55930	broad.mit.edu	37	15	52536728	52536728	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:52536728A>T	uc010bff.2	-	19	2352	c.2215T>A	c.(2215-2217)TTC>ATC	p.F739I	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	739	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		GCTCTGAAGAAAATTTTGGTT	0.358													31	67					0	0	0.013726	0	0
MYO5C	55930	broad.mit.edu	37	15	52567770	52567770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:52567770G>A	uc010bff.2	-	5	732	c.595C>T	c.(595-597)CCC>TCC	p.P199S	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Missense_Mutation_p.P162S	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	199	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCGGTGATGGGATTGGATGCC	0.557													51	133					0	0	0.014410	0	0
KIAA1370	56204	broad.mit.edu	37	15	52892383	52892383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:52892383G>A	uc002acg.3	-	9	2743	c.2590C>T	c.(2590-2592)CCA>TCA	p.P864S	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.P776S|KIAA1370_uc010ugf.1_Missense_Mutation_p.P871S	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	864											0				all cancers(107;0.0803)		CTCAAAAATGGTTTTTCATGA	0.308													32	64					0	0	0.019004	0	0
WDR72	256764	broad.mit.edu	37	15	53907716	53907716	+	Missense_Mutation	SNP	C	T	T	rs146417353		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:53907716C>T	uc002acj.2	-	15	2729	c.2687G>A	c.(2686-2688)CGA>CAA	p.R896Q	WDR72_uc010bfi.1_Missense_Mutation_p.R896Q	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	896										lung(1)|skin(1)	2				all cancers(107;0.0511)		ATCTGACTCTCGCAAAGAATC	0.348													7	18					0	0	0.003080	0	0
UNC13C	440279	broad.mit.edu	37	15	54841850	54841850	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:54841850C>T	uc002ack.2	+	26	5838	c.5838C>T	c.(5836-5838)TTC>TTT	p.F1946F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1946	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGATGATTTTCATTGCAGCTA	0.328													32	89					0	0	0.017118	0	0
CGNL1	84952	broad.mit.edu	37	15	57731026	57731026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:57731026C>T	uc002aeg.2	+	2	905	c.829C>T	c.(829-831)CCC>TCC	p.P277S	CGNL1_uc010bfw.2_Missense_Mutation_p.P277S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	277	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGATGTTCTTCCCTTCCGGCG	0.612													29	61					0	0	0.007291	0	0
LIPC	3990	broad.mit.edu	37	15	58830616	58830616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:58830616C>T	uc010bga.1	+	4	781	c.173C>T	c.(172-174)ACC>ATC	p.T58I	LIPC_uc010bfz.1_Missense_Mutation_p.T58I|LIPC_uc002afa.1_Missense_Mutation_p.T58I|LIPC_uc010bgb.1_Intron|LIPC_uc010ugy.1_Missense_Mutation_p.T58I	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	58					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		TTTGGAGAAACCAATCAGGGC	0.478													101	276					0	0	0.014410	0	0
TLN2	83660	broad.mit.edu	37	15	62985100	62985100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:62985100C>T	uc002alb.3	+	10	1175	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	392	FERM.|Interaction with PIP5K1C (By similarity).				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GAGCAGATATCCCAGCTGATT	0.408													46	111					0	0	0.014410	0	0
HERC1	8925	broad.mit.edu	37	15	63904618	63904618	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:63904618G>A	uc002amp.2	-	77	14380	c.14232C>T	c.(14230-14232)TAC>TAT	p.Y4744Y	HERC1_uc002amo.2_5'Flank	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4744	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCACCTCACGGTACCGCACCA	0.552													22	77					0	0	0.006320	0	0
HERC1	8925	broad.mit.edu	37	15	63954088	63954088	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:63954088G>C	uc002amp.2	-	45	9182	c.9034C>G	c.(9034-9036)CGC>GGC	p.R3012G		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3012					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCATTGCTGCGATAGCCCTGG	0.537													60	180					0	0	0.014410	0	0
KBTBD13	390594	broad.mit.edu	37	15	65370276	65370276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:65370276G>A	uc010uis.1	+	1	1123	c.1123G>A	c.(1123-1125)GCC>ACC	p.A375T	RASL12_uc010uir.1_5'Flank	NM_001101362	NP_001094832	C9JR72	KBTBD_HUMAN	hypothetical protein LOC390594	375	Kelch 5.					cytoplasm					0						TCTCAACCTGGCCACGGGCCA	0.652													30	72					0	0	0.012213	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621279	65621280	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:65621279_65621280GG>AA	uc002aos.2	-	14	2664_2665	c.2412_2413CC>TT	c.(2410-2415)GCCCGG>GCTTGG	p.R805W	IGDCC3_uc002aor.1_Missense_Mutation_p.R91W	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	805	Cytoplasmic (Potential).									ovary(3)	3						TGGGTAACCCGGGCCGCTGCAG	0.673													35	88					0	0	0.004672	0	0
IQCH	64799	broad.mit.edu	37	15	67664823	67664823	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:67664823C>T	uc002aqo.1	+	9	1175	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	IQCH_uc010ujv.1_Silent_p.I195I|IQCH_uc002aqn.1_Silent_p.I203I|IQCH_uc002aqq.1_Silent_p.I124I|IQCH_uc002aqp.1_Silent_p.I128I	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	376	IQ.									skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CCATGAAGATCCAAGCCACAT	0.463													30	74					0	0	0.009535	0	0
GLCE	26035	broad.mit.edu	37	15	69561416	69561416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:69561416C>T	uc002ary.1	+	5	1915	c.1687C>T	c.(1687-1689)CGT>TGT	p.R563C		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	563	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						CTATGACCTCCGTCACTTCAT	0.507													64	167					0	0	0.014410	0	0
THSD4	79875	broad.mit.edu	37	15	71535268	71535268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:71535268C>T	uc002atb.1	+	4	824	c.745C>T	c.(745-747)CAT>TAT	p.H249Y	THSD4_uc002atd.1_5'UTR	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	249	TSP type-1 1.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						ACCTTTGACCCATGATCAAGG	0.577													17	66					0	0	0.006122	0	0
NEO1	4756	broad.mit.edu	37	15	73418859	73418859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:73418859C>T	uc002avm.3	+	4	968	c.826C>T	c.(826-828)CCT>TCT	p.P276S	NEO1_uc010ukx.1_Missense_Mutation_p.P276S|NEO1_uc010uky.1_Missense_Mutation_p.P276S|NEO1_uc010ukz.1_5'UTR	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	276	Extracellular (Potential).|Ig-like C2-type 3.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TTCAGGACTTCCTACTCCAAC	0.433													24	61					0	0	0.021523	0	0
LOXL1	4016	broad.mit.edu	37	15	74238784	74238784	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:74238784A>T	uc002awc.1	+	3	1574	c.1238A>T	c.(1237-1239)GAC>GTC	p.D413V	LOXL1_uc002awd.1_5'Flank	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	413	Lysyl-oxidase like.				protein deamination	extracellular space	copper ion binding				0						GAGGCCACCGACTACGATGTG	0.677													5	17					0	0	0.014758	0	0
LOXL1	4016	broad.mit.edu	37	15	74240205	74240205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:74240205G>A	uc002awc.1	+	5	1900	c.1564G>A	c.(1564-1566)GAC>AAC	p.D522N	LOXL1_uc002awd.1_RNA	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	522	Lysyl-oxidase like.				protein deamination	extracellular space	copper ion binding				0						CCAGTGGATCGACATAACCGA	0.577													47	163					0	0	0.014410	0	0
ISLR	3671	broad.mit.edu	37	15	74468381	74468381	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:74468381G>A	uc002axg.1	+	2	1464	c.1182G>A	c.(1180-1182)GGG>GGA	p.G394G	ISLR_uc002axh.1_Silent_p.G394G	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	394					cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GCCGTGCTGGGAACCCTGAGG	0.617													27	77					0	0	0.009535	0	0
CCDC33	80125	broad.mit.edu	37	15	74622634	74622634	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:74622634C>T	uc002axo.2	+	12	1789	c.1395C>T	c.(1393-1395)AGC>AGT	p.S465S	CCDC33_uc002axp.2_Silent_p.S287S|CCDC33_uc002axq.2_Silent_p.S58S|CCDC33_uc002axr.2_Silent_p.S58S	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	668	Potential.						protein binding			ovary(3)|skin(2)	5						TACTGAGGAGCCGCCTGGCCC	0.632													13	35					0	0	0.016723	0	0
ARID3B	10620	broad.mit.edu	37	15	74865502	74865502	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:74865502G>A	uc002aye.2	+	4	855	c.654G>A	c.(652-654)AGG>AGA	p.R218R	ARID3B_uc002ayc.2_Silent_p.R218R|ARID3B_uc002ayd.2_Silent_p.R218R	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	218	ARID.|Interaction with RB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						ATCCTGAAAGGAAAGAGTTCC	0.358													71	226					0	0	0.014410	0	0
CYP1A1	1543	broad.mit.edu	37	15	75014041	75014041	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:75014041G>A	uc002ayp.3	-	3	965	c.843C>T	c.(841-843)ATC>ATT	p.I281I	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Silent_p.I17I|CYP1A1_uc010bjx.2_Silent_p.I17I|CYP1A1_uc002ayq.3_Silent_p.I281I|CYP1A1_uc010bjy.2_Silent_p.I281I|CYP1A1_uc010bjz.1_Silent_p.I17I	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	281					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GGCTGTCTGTGATGTCCCGGA	0.512									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				41	120					0	0	0.014410	0	0
CPLX3	594855	broad.mit.edu	37	15	75122657	75122657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:75122657G>A	uc002ayu.1	+	3	533	c.439G>A	c.(439-441)GAT>AAT	p.D147N		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	147						cell junction|synapse	syntaxin binding				0						CACACTGGGGGATCTCAAGCA	0.602													21	55					0	0	0.010504	0	0
SCAMP5	192683	broad.mit.edu	37	15	75309050	75309050	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:75309050T>G	uc002azk.1	+	4	415	c.253T>G	c.(253-255)TCC>GCC	p.S85A	SCAMP5_uc002azl.1_Missense_Mutation_p.S85A|SCAMP5_uc002azm.1_Missense_Mutation_p.S85A|SCAMP5_uc002azn.1_Missense_Mutation_p.S85A|SCAMP5_uc010uly.1_Intron	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	85	Helical; (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						CACACCCTGCTCCTACGTCTG	0.602													41	138					0	0	0.014410	0	0
C15orf39	56905	broad.mit.edu	37	15	75499767	75499767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:75499767C>T	uc002azp.3	+	2	1698	c.1378C>T	c.(1378-1380)CCG>TCG	p.P460S	C15orf39_uc002azq.3_Missense_Mutation_p.P460S|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	460											0						GCACTCTGGGCCGCCCATCGT	0.647													37	96					0	0	0.007835	0	0
SNUPN	10073	broad.mit.edu	37	15	75890763	75890763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:75890763G>A	uc002ban.2	-	9	1109	c.1019C>T	c.(1018-1020)TCT>TTT	p.S340F	SNUPN_uc002bao.2_Missense_Mutation_p.S340F|SNUPN_uc002bap.2_Missense_Mutation_p.S382F|SNUPN_uc002baq.2_Missense_Mutation_p.S340F|SNUPN_uc002bar.2_Missense_Mutation_p.S340F|SNUPN_uc002bas.2_Missense_Mutation_p.S340F	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	340					ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						CTTGGGAGTAGACAGGTGCTC	0.502													43	113					0	0	0.010771	0	0
SGK269	79834	broad.mit.edu	37	15	77425473	77425473	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:77425473G>A	uc002bcm.2	-	5	4259	c.3951C>T	c.(3949-3951)CTC>CTT	p.L1317L		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1317	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		CTCCAAAACGGAGCTGGTCTT	0.468													22	71					0	0	0.018920	0	0
ACSBG1	23205	broad.mit.edu	37	15	78526761	78526761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:78526761C>T	uc002bdh.2	-	1	139	c.83G>A	c.(82-84)AGC>AAC	p.S28N	ACSBG1_uc010umw.1_Missense_Mutation_p.S28N|ACSBG1_uc010umx.1_5'UTR|ACSBG1_uc010umy.1_5'UTR	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	28					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						GTCCTGCCGGCTCTCCTGTGG	0.483													161	356					0	0	0.014410	0	0
IL16	3603	broad.mit.edu	37	15	81593826	81593826	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:81593826G>A	uc002bgh.3	+	15	3667	c.3291G>A	c.(3289-3291)GTG>GTA	p.V1097V	IL16_uc010blq.1_Silent_p.V1051V|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Silent_p.V1139V|IL16_uc002bgg.2_Silent_p.V1097V|IL16_uc002bgi.1_Silent_p.V487V|IL16_uc002bgj.2_Silent_p.V591V|IL16_uc002bgk.2_Silent_p.V396V|IL16_uc002bgl.1_Silent_p.V396V|IL16_uc010unq.1_Silent_p.V396V	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	1097	Interaction with HTLV-1 tax.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TCGAGGAGGTGAAGGTTCTGG	0.473													37	92					0	0	0.023175	0	0
TMC3	342125	broad.mit.edu	37	15	81665050	81665050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:81665050C>T	uc002bgo.1	-	2	118	c.118G>A	c.(118-120)GAA>AAA	p.E40K	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.E40K	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	40	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						TCCCCTGTTTCATCAGCACTA	0.448													17	44					0	0	0.028581	0	0
AP3B2	8120	broad.mit.edu	37	15	83333168	83333168	+	Missense_Mutation	SNP	C	T	T	rs34200105		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:83333168C>T	uc010uoh.1	-	18	2332	c.2155G>A	c.(2155-2157)GAC>AAC	p.D719N	AP3B2_uc010uoi.1_Missense_Mutation_p.D738N|AP3B2_uc010uoj.1_Missense_Mutation_p.D687N|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.D355N|AP3B2_uc002biy.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	719	Glu/Ser-rich.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TCTTCATTGTCGGACTCACTG	0.572													36	89					0	0	0.021022	0	0
AP3B2	8120	broad.mit.edu	37	15	83335593	83335593	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:83335593G>A	uc010uoh.1	-	15	1935	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I	AP3B2_uc010uoi.1_Silent_p.I586I|AP3B2_uc010uoj.1_Silent_p.I554I|AP3B2_uc010uog.1_Silent_p.I222I	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	586					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			CGGAAGGGACGATGAGCTGCC	0.587													66	140					0	0	0.014410	0	0
HOMER2	9455	broad.mit.edu	37	15	83544044	83544044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:83544044G>A	uc002bjg.2	-	3	461	c.275C>T	c.(274-276)TCT>TTT	p.S92F	HOMER2_uc002bjh.2_Missense_Mutation_p.S92F|HOMER2_uc002bjj.2_Missense_Mutation_p.S92F|HOMER2_uc002bji.2_Missense_Mutation_p.S92F	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	92	Potential.|WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						CTGCTGCTCAGAGGAAAACCC	0.517													21	49					0	0	0.010504	0	0
HDGFRP3	50810	broad.mit.edu	37	15	83826195	83826195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:83826195G>A	uc002bjs.1	-	4	586	c.431C>T	c.(430-432)TCA>TTA	p.S144L		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	144	Nuclear localization signal (Potential).				cell proliferation	nucleus	growth factor activity				0						TTTCCGTTTTGAGCCTGCTTT	0.338													20	64					0	0	0.016522	0	0
SH3GL3	6457	broad.mit.edu	37	15	84245353	84245353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:84245353G>A	uc002bjw.2	+	6	679	c.484G>A	c.(484-486)GAA>AAA	p.E162K	SH3GL3_uc010uot.1_Missense_Mutation_p.E162K|SH3GL3_uc002bjx.2_Missense_Mutation_p.E93K|SH3GL3_uc002bju.2_Missense_Mutation_p.E170K|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	162	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						GAAAAAGCTGGAAGGCCGCCG	0.393													28	39					0	0	0.009535	0	0
SLC28A1	9154	broad.mit.edu	37	15	85438352	85438352	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:85438352G>A	uc002blg.2	+	6	661	c.459G>A	c.(457-459)AAG>AAA	p.K153K	SLC28A1_uc010upd.1_Silent_p.K75K|SLC28A1_uc010bnb.2_Silent_p.K153K|SLC28A1_uc010upe.1_Silent_p.K153K|SLC28A1_uc010upf.1_Silent_p.K153K|SLC28A1_uc010upg.1_Silent_p.K153K|SLC28A1_uc002blf.2_Silent_p.K153K	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	153	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCTGGTTTAAGAGGTGAGTGA	0.642													33	77					0	0	0.010818	0	0
SLC28A1	9154	broad.mit.edu	37	15	85447433	85447433	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:85447433C>T	uc002blg.2	+	7	769	c.567C>T	c.(565-567)GTC>GTT	p.V189V	SLC28A1_uc010upd.1_Silent_p.V111V|SLC28A1_uc010bnb.2_Silent_p.V189V|SLC28A1_uc010upe.1_Silent_p.V189V|SLC28A1_uc010upf.1_Silent_p.V189V|SLC28A1_uc010upg.1_Silent_p.V189V	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	189	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCGTGTTCGTCGCTCTCCTCT	0.592													59	180					0	0	0.014410	0	0
AGBL1	123624	broad.mit.edu	37	15	87066088	87066088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:87066088C>T	uc002blz.1	+	18	2545	c.2465C>T	c.(2464-2466)TCT>TTT	p.S822F		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	822					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CAATGGCTTTCTCCCAGTGCT	0.468													44	99					0	0	0.009718	0	0
AGBL1	123624	broad.mit.edu	37	15	87089343	87089343	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:87089343C>T	uc002blz.1	+	19	2738	c.2658C>T	c.(2656-2658)ATC>ATT	p.I886I		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	886					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CATCTACTATCCTAGAGGAGG	0.473													8	27					0	0	0.008291	0	0
NTRK3	4916	broad.mit.edu	37	15	88420186	88420186	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:88420186A>T	uc002bme.1	-	19	2662	c.2500T>A	c.(2500-2502)TAC>AAC	p.Y834N	NTRK3_uc002bmh.2_Missense_Mutation_p.Y812N|NTRK3_uc002bmf.1_Missense_Mutation_p.Y820N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	834	Cytoplasmic (Potential).|Protein kinase.	Interaction with PLC-gamma-1 (By similarity).			transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			ATGTCCAGGTAGATTGGGGTG	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			26	76					0	0	0.007291	0	0
DET1	55070	broad.mit.edu	37	15	89056206	89056206	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:89056206G>A	uc002bmr.2	-	5	1781	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Silent_p.F554F	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	543						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			GTCGCATATGGAAGTTGACAA	0.483													32	91					0	0	0.013726	0	0
MIR1179	100302235	broad.mit.edu	37	15	89151363	89151363	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:89151363C>T	hsa-mir-1179|MI0006272	+			c.26C>T																				0						AGCATTCTTTCATTGGTTGGT	0.388													86	190					0	0	0.014410	0	0
ABHD2	11057	broad.mit.edu	37	15	89736470	89736470	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:89736470A>C	uc002bnj.2	+	15	1918	c.1001A>C	c.(1000-1002)TAT>TCT	p.Y334S	ABHD2_uc002bnk.2_Missense_Mutation_p.Y334S	NM_007011	NP_008942	P08910	ABHD2_HUMAN	alpha/beta hydrolase domain containing protein	334						integral to membrane	carboxylesterase activity			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					TTGCAGATTTATGTTCCTCTC	0.408													44	89					0	0	0.014410	0	0
FANCI	55215	broad.mit.edu	37	15	89848400	89848400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:89848400C>T	uc010bnp.1	+	29	3203	c.3113C>T	c.(3112-3114)TCG>TTG	p.S1038L	FANCI_uc002bnm.1_Missense_Mutation_p.S978L|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.S799L|FANCI_uc002bnq.1_Missense_Mutation_p.S451L	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	1038					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					CTGCATGTTTCGTATAAGAGT	0.413								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				80	157					0	0	0.014410	0	0
KIF7	374654	broad.mit.edu	37	15	90171865	90171866	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:90171865_90171866AC>TT	uc002bof.2	-	19	3893_3894	c.3816_3817GT>AA	c.(3814-3819)CCGTTA>CCAATA	p.L1273I	KIF7_uc010upw.1_Missense_Mutation_p.L759I|C15orf42_uc010upv.1_Intron	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	1273					microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GTCAAGGGTAACGGAGCGTGGA	0.693													48	97					0	0	0.004672	0	0
KIF7	374654	broad.mit.edu	37	15	90185521	90185521	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:90185521G>A	uc002bof.2	-	11	2384	c.2307C>T	c.(2305-2307)CTC>CTT	p.L769L	KIF7_uc010upw.1_Silent_p.L255L	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	769	Potential.				microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCTTGCCCTCGAGCTCCCGCA	0.692													12	33					0	0	0.013537	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892213	90892213	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:90892213C>T	uc010uqf.1	-	1		c.467G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						AAGGCGTCCTCAGGTCTCAGG	0.488													29	81					0	0	0.010818	0	0
SV2B	9899	broad.mit.edu	37	15	91803600	91803600	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:91803600C>T	uc002bqv.2	+	5	1360	c.969C>T	c.(967-969)ACC>ACT	p.T323T	SV2B_uc002bqt.2_Silent_p.T323T|SV2B_uc010uqv.1_Silent_p.T172T|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	323	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TCCATGACACCAACATGAGAG	0.473													49	135					0	0	0.014410	0	0
SYNM	23336	broad.mit.edu	37	15	99670730	99670731	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:99670730_99670731CC>AT	uc002bup.2	+	6	2285_2286	c.2165_2166CC>AT	c.(2164-2166)GCC>GAT	p.A722D	SYNM_uc002buo.2_Missense_Mutation_p.A722D|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	722	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						GGCAAGTCAGCCGAGCAGATGA	0.515													23	48					0	0	0.004672	0	0
SYNM	23336	broad.mit.edu	37	15	99672295	99672295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:99672295G>A	uc002bup.2	+	6	3850	c.3730G>A	c.(3730-3732)GGG>AGG	p.G1244R	SYNM_uc002buo.2_Intron|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	1244	Tail.|Interaction with DMD and UTRN.|Interaction with TLN1 and VCL.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						TTCTGCTGCAGGGAAGGTTGG	0.478													46	112					0	0	0.014410	0	0
C15orf51	196968	broad.mit.edu	37	15	100332594	100332594	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:100332594C>T	uc010urx.1	-	5		c.1598G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GAAAGTTCATCACCCTAGAAC	0.617													58	139					0	0	0.014410	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100514720	100514720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:100514720G>A	uc002bvv.1	-	22	3254	c.3175C>T	c.(3175-3177)CGG>TGG	p.R1059W	ADAMTS17_uc002bvw.1_RNA	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1059	PLAC.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CGGATGACCCGGCAATATACC	0.567													56	108					0	0	0.014410	0	0
PCSK6	5046	broad.mit.edu	37	15	101933554	101933554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:101933554C>T	uc002bwy.2	-	9	1386	c.1072G>A	c.(1072-1074)GAT>AAT	p.D358N	PCSK6_uc010bpd.2_Missense_Mutation_p.D228N|PCSK6_uc010bpe.2_Missense_Mutation_p.D358N|PCSK6_uc002bxa.2_Missense_Mutation_p.D358N|PCSK6_uc002bxb.2_Missense_Mutation_p.D358N|PCSK6_uc002bxc.1_Missense_Mutation_p.D358N|PCSK6_uc002bxd.1_Missense_Mutation_p.D358N|PCSK6_uc002bxe.2_Missense_Mutation_p.D358N|PCSK6_uc002bxg.1_Missense_Mutation_p.D358N	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	358	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GTGTAGCCATCGCACGAGCAG	0.617													32	64					0	0	0.013726	0	0
NHLRC4	283948	broad.mit.edu	37	16	618156	618156	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:618156C>T	uc002chl.2	+	2	705	c.109C>T	c.(109-111)CTG>TTG	p.L37L	PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_5'Flank|PIGQ_uc002chn.2_5'Flank|PIGQ_uc002cho.2_5'Flank	NM_176677	NP_788850	P0CG21	NHLC4_HUMAN	hypothetical protein LOC283948	37	NHL 1.										0						CCGCCAACCCCTGGGCTCCCT	0.662													5	30					0	0	0.021553	0	0
WDR90	197335	broad.mit.edu	37	16	706349	706349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:706349C>T	uc002cii.1	+	18	2068	c.2014C>T	c.(2014-2016)CGT>TGT	p.R672C	WDR90_uc002cig.1_3'UTR|WDR90_uc002cih.1_3'UTR|WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.R199C|WDR90_uc002cil.1_5'Flank|WDR90_uc002cim.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	672	WD 5.									ovary(1)	1		Hepatocellular(780;0.0218)				CGATGGCCTCCGTGTGCTGTC	0.711													9	29					0	0	0.004482	0	0
RHOT2	89941	broad.mit.edu	37	16	720896	720896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:720896C>T	uc002cip.2	+	10	711	c.644C>T	c.(643-645)TCC>TTC	p.S215F	RHOT2_uc002ciq.2_Missense_Mutation_p.S108F|RHOT2_uc010bqy.2_5'UTR	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	215	EF-hand 1.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				AAGCAGAAATCCTGCTTTGGG	0.672													9	31					0	0	0.004482	0	0
FBXL16	146330	broad.mit.edu	37	16	745561	745561	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:745561C>T	uc002cjc.2	-	4	1199	c.996G>A	c.(994-996)AAG>AAA	p.K332K	FBXL16_uc002cja.2_5'Flank|FBXL16_uc002cjb.2_Silent_p.K120K	NM_153350	NP_699181	Q8N461	FXL16_HUMAN	F-box and leucine-rich repeat protein 16	332	LRR 3.										0		Hepatocellular(780;0.0218)				CGTCGGTGACCTTGGAGCAGC	0.667													5	29					0	0	0.021553	0	0
MSLNL	401827	broad.mit.edu	37	16	820915	820915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:820915C>T	uc002cjz.1	-	13	2470	c.2470G>A	c.(2470-2472)GAC>AAC	p.D824N		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	473	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						TAGAGCACGTCCTTCCGGCTC	0.687													4	13					0	0	0.009096	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270573	1270573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1270573C>T	uc002cks.2	+	35	6889	c.6641C>T	c.(6640-6642)ACC>ATC	p.T2214I	CACNA1H_uc002ckt.2_Missense_Mutation_p.T2208I|CACNA1H_uc002cku.2_Missense_Mutation_p.T909I|CACNA1H_uc010brj.2_Missense_Mutation_p.T925I|CACNA1H_uc002ckv.2_Missense_Mutation_p.T903I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2214	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGCGGCAGCACCACACTGAGG	0.716													8	43					0	0	0.003080	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270696	1270696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1270696C>T	uc002cks.2	+	35	7012	c.6764C>T	c.(6763-6765)TCC>TTC	p.S2255F	CACNA1H_uc002ckt.2_Missense_Mutation_p.S2249F|CACNA1H_uc002cku.2_Missense_Mutation_p.S950F|CACNA1H_uc010brj.2_Missense_Mutation_p.S966F|CACNA1H_uc002ckv.2_Missense_Mutation_p.S944F	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2255	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGCCAGGCCTCCTGCCGGGCT	0.697													15	25					0	0	0.020292	0	0
TPSAB1	7177	broad.mit.edu	37	16	1291656	1291656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1291656G>A	uc002ckz.2	+	4	507	c.455G>A	c.(454-456)GGG>GAG	p.G152E	TPSAB1_uc010uux.1_Missense_Mutation_p.G88E	NM_003294	NP_003285	Q15661	TRYB1_HUMAN	tryptase alpha/beta 1 precursor	152	Peptidase S1.				defense response|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				TTCCCCCCGGGGATGCCGTGC	0.682													3	39					0	0	0.009096	0	0
TELO2	9894	broad.mit.edu	37	16	1552673	1552673	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1552673C>A	uc002cly.2	+	14	1972	c.1681C>A	c.(1681-1683)CTG>ATG	p.L561M		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	561						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				CAAGGTGCTTCTGCATCTGGA	0.672													91	181					5.84261e-33	5.9681e-33	0.014410	1	0
IGFALS	3483	broad.mit.edu	37	16	1842307	1842307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1842307C>T	uc002cmy.2	-	2	193	c.112G>A	c.(112-114)GGC>AGC	p.G38S	IGFALS_uc010uvn.1_Missense_Mutation_p.G76S|IGFALS_uc010uvo.1_5'UTR	NM_004970	NP_004961	P35858	ALS_HUMAN	insulin-like growth factor binding protein, acid	38	LRRNT.				cell adhesion|signal transduction	soluble fraction	insulin-like growth factor binding				0						CACGCTGGGCCCTCGGCTTCC	0.716													8	42					0	0	0.003080	0	0
HS3ST6	64711	broad.mit.edu	37	16	1961657	1961657	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:1961657C>T	uc002cnf.2	-	2	870	c.870G>A	c.(868-870)CAG>CAA	p.Q290Q		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	290											0						GGTAGAACTCCTGCAGGCGCC	0.692													8	21					0	0	0.003080	0	0
CCNF	899	broad.mit.edu	37	16	2495514	2495514	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:2495514C>T	uc002cqd.1	+	10	1073	c.985C>T	c.(985-987)CTG>TTG	p.L329L	CCNF_uc002cqe.1_Silent_p.L21L	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	329	Cyclin N-terminal.				cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				CTTCACAAGCCTGTGCCTGCA	0.607													45	89					0	0	0.014410	0	0
C16orf59	80178	broad.mit.edu	37	16	2514086	2514086	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:2514086C>T	uc002cqh.2	+	9	1042	c.1011C>T	c.(1009-1011)CCC>CCT	p.P337P	C16orf59_uc002cqf.1_Silent_p.P337P|C16orf59_uc002cqg.1_Silent_p.P170P|C16orf59_uc002cqi.2_Silent_p.P170P|C16orf59_uc010uwb.1_Intron	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	337											0		Ovarian(90;0.17)				GGAGGCCCCCCGGAGCCTCGC	0.682													15	48					0	0	0.008871	0	0
SRRM2	23524	broad.mit.edu	37	16	2813884	2813884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:2813884G>A	uc002crk.2	+	11	3904	c.3355G>A	c.(3355-3357)GGT>AGT	p.G1119S	SRRM2_uc002crj.1_Missense_Mutation_p.G1023S|SRRM2_uc002crl.1_Missense_Mutation_p.G1119S|SRRM2_uc010bsu.1_Missense_Mutation_p.G1023S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1119	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						ACAAGATAGAGGTGAGTTCTC	0.478													73	137					0	0	0.014410	0	0
SRRM2	23524	broad.mit.edu	37	16	2817055	2817055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:2817055C>T	uc002crk.2	+	11	7075	c.6526C>T	c.(6526-6528)CAT>TAT	p.H2176Y	SRRM2_uc002crj.1_Missense_Mutation_p.H2080Y|SRRM2_uc002crl.1_Missense_Mutation_p.H2176Y|SRRM2_uc010bsu.1_Missense_Mutation_p.H2080Y	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2176	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCAGAAAATCATGCTCAGTC	0.567													40	104					0	0	0.025465	0	0
VASN	114990	broad.mit.edu	37	16	4431686	4431686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:4431686G>A	uc002cwj.1	+	2	963	c.808G>A	c.(808-810)GAT>AAT	p.D270N	CORO7_uc002cwe.2_Intron|CORO7_uc002cwf.2_Intron|CORO7_uc002cwg.3_Intron|CORO7_uc002cwh.3_Intron|CORO7_uc010uxh.1_Intron|CORO7_uc010uxi.1_Intron|CORO7_uc002cwi.1_Intron|CORO7_uc010uxj.1_Intron|CORO7_uc010btp.1_Intron	NM_138440	NP_612449	Q6EMK4	VASN_HUMAN	slit-like 2 precursor	270	LRR 10.|Extracellular (Potential).					extracellular region|integral to membrane					0						GCAGGAGCTGGATGTGAGCAA	0.726													10	25					0	0	0.008291	0	0
C16orf71	146562	broad.mit.edu	37	16	4796973	4796973	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:4796973G>C	uc002cxn.2	+	8	1689	c.1227G>C	c.(1225-1227)GAG>GAC	p.E409D		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	409										central_nervous_system(1)	1						AGGAGGAAGAGATGGCAGCTC	0.617													2	10					0	0	0.009096	0	0
ABAT	18	broad.mit.edu	37	16	8839922	8839922	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:8839922G>A	uc002czc.3	+	3	301	c.135G>A	c.(133-135)CTG>CTA	p.L45L	ABAT_uc002czd.3_Silent_p.L45L|ABAT_uc010buh.2_Intron|ABAT_uc010bui.2_Silent_p.L45L	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	45					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	ATGGGCCTCTGATGAAGACGG	0.473													12	74					0	0	0.020292	0	0
GRIN2A	2903	broad.mit.edu	37	16	9943800	9943800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:9943800G>A	uc002czo.3	-	5	1689	c.1141C>T	c.(1141-1143)CAT>TAT	p.H381Y	GRIN2A_uc010uym.1_Missense_Mutation_p.H381Y|GRIN2A_uc010uyn.1_Missense_Mutation_p.H224Y|GRIN2A_uc002czr.3_Missense_Mutation_p.H381Y	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	381	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCAGCGTATGGTTCTCCCAC	0.577													11	41					0	0	0.013537	0	0
GRIN2A	2903	broad.mit.edu	37	16	10273956	10273956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:10273956C>T	uc002czo.3	-	2	861	c.313G>A	c.(313-315)GAC>AAC	p.D105N	GRIN2A_uc010uym.1_Missense_Mutation_p.D105N|GRIN2A_uc002czr.3_Missense_Mutation_p.D105N|GRIN2A_uc010buk.2_Missense_Mutation_p.D105N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	105	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCTCCTGGTCCGTGTCGTCC	0.597													29	148					0	0	0.007291	0	0
TNP2	7142	broad.mit.edu	37	16	11363116	11363116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:11363116C>T	uc002das.2	-	1	45	c.4G>A	c.(4-6)GAC>AAC	p.D2N	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	2					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						GTCTGGGTGTCCATAGGAGGC	0.592													22	93					0	0	0.012319	0	0
ABCC1	4363	broad.mit.edu	37	16	16110399	16110399	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:16110399T>A	uc010bvi.2	+	5	711	c.536T>A	c.(535-537)TTT>TAT	p.F179Y	ABCC1_uc010bvj.2_Missense_Mutation_p.F179Y|ABCC1_uc010bvk.2_Missense_Mutation_p.F179Y|ABCC1_uc010bvl.2_Missense_Mutation_p.F179Y|ABCC1_uc010bvm.2_Missense_Mutation_p.F179Y|ABCC1_uc002del.3_Missense_Mutation_p.F63Y|ABCC1_uc010bvn.2_Missense_Mutation_p.F42Y	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	179	Helical; Name=5.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TACGTCTACTTTTCCCTCTTA	0.463													78	397					0	0	0.014410	0	0
ABCC6	368	broad.mit.edu	37	16	16269830	16269830	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:16269830C>T	uc002den.3	-	20	2641	c.2604G>A	c.(2602-2604)GGG>GGA	p.G868G	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	868	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TGGTGCTGGTCCCAGGTTCTG	0.592													38	79					0	0	0.008740	0	0
ACSM2A	123876	broad.mit.edu	37	16	20476979	20476979	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:20476979G>A	uc010bwe.2	+	4	557	c.318G>A	c.(316-318)GGG>GGA	p.G106G	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Silent_p.G27G|ACSM2A_uc002dhf.3_Silent_p.G106G|ACSM2A_uc002dhg.3_Silent_p.G106G|ACSM2A_uc010vay.1_Silent_p.G27G	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	106					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TGCAGCGTGGGGATCGTGTGG	0.572													8	79					0	0	0.004482	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554476	20554476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:20554476C>T	uc002dhj.3	-	12	1600	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	ACSM2B_uc002dhk.3_Missense_Mutation_p.D464N|ACSM2B_uc010bwf.1_Missense_Mutation_p.D464N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	464					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTAATGATATCATCTGCCCGT	0.507													32	475					0	0	0.021022	0	0
ACSM2B	348158	broad.mit.edu	37	16	20566764	20566764	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:20566764T>A	uc002dhj.3	-	5	633	c.423A>T	c.(421-423)AAA>AAT	p.K141N	ACSM2B_uc002dhk.3_Missense_Mutation_p.K141N|ACSM2B_uc010bwf.1_Missense_Mutation_p.K141N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	141					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGTCAGTGGATTTCATCTGGA	0.438													18	85					0	0	0.016522	0	0
ACSM2B	348158	broad.mit.edu	37	16	20576154	20576154	+	Missense_Mutation	SNP	C	T	T	rs144570025		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:20576154C>T	uc002dhj.3	-	3	224	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	ACSM2B_uc002dhk.3_Missense_Mutation_p.R5Q|ACSM2B_uc010bwf.1_Missense_Mutation_p.R5Q	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	5					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CTGAACTTTTCGCAGCCAATG	0.498													8	49					0	0	0.006214	0	0
ACSM1	116285	broad.mit.edu	37	16	20696539	20696539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:20696539C>T	uc002dhm.1	-	2	447	c.379G>A	c.(379-381)GTG>ATG	p.V127M	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.V127M	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	127					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CCCACAGCCACCAGCCACCAC	0.577													7	75					0	0	0.001984	0	0
DNAH3	55567	broad.mit.edu	37	16	21048078	21048078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:21048078C>T	uc010vbe.1	-	35	5043	c.5043G>A	c.(5041-5043)ATG>ATA	p.M1681I		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1681	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTGGAGTTTCATCTTTTTGA	0.368													34	56					0	0	0.023175	0	0
DNAH3	55567	broad.mit.edu	37	16	21049164	21049164	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:21049164C>T	uc010vbe.1	-	34	4869	c.4869G>A	c.(4867-4869)GAG>GAA	p.E1623E		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1623					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CACTTTCATTCTCCTCTGGAT	0.512													8	45					0	0	0.003080	0	0
TMEM159	57146	broad.mit.edu	37	16	21172581	21172581	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:21172581C>T	uc002dif.3	+	2	439	c.78C>T	c.(76-78)TCC>TCT	p.S26S	DNAH3_uc010vbe.1_5'Flank|TMEM159_uc002dig.3_RNA|TMEM159_uc010vbf.1_Silent_p.S26S|TMEM159_uc002dih.3_Silent_p.S26S	NM_020422	NP_065155	Q96B96	TM159_HUMAN	transmembrane protein 159	26						integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0972)		TGATAGACTCCTTCCAGAATA	0.313													11	76					0	0	0.008291	0	0
ZP2	7783	broad.mit.edu	37	16	21213444	21213444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:21213444C>T	uc002dii.2	-	11	1268	c.1268G>A	c.(1267-1269)GGA>GAA	p.G423E	ZP2_uc010bwn.1_Missense_Mutation_p.G462E	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	423	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CGTTCCACATCCATTCAGGGG	0.498													21	34					0	0	0.008871	0	0
ZP2	7783	broad.mit.edu	37	16	21221024	21221024	+	Silent	SNP	C	T	T	rs150656642		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:21221024C>T	uc002dii.2	-	4	258	c.258G>A	c.(256-258)CCG>CCA	p.P86P	ZP2_uc010bwn.1_Silent_p.P125P|ZP2_uc010bwo.2_Silent_p.P125P	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	86	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		AAGTGCAGTTCGGCATGTCGA	0.498													12	47					0	0	0.013537	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208665	23208665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:23208665C>T	uc002dlm.1	+	6	1133	c.994C>T	c.(994-996)CAT>TAT	p.H332Y		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	332	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	GGTGATCATCCATCGGCAGGA	0.468													23	41					0	0	0.014323	0	0
CACNG3	10368	broad.mit.edu	37	16	24372930	24372930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:24372930C>T	uc002dmf.2	+	4	1894	c.694C>T	c.(694-696)CGG>TGG	p.R232W		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	232					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GTATCGATTCCGGAGGCGGTC	0.527													16	66					0	0	0.024245	0	0
IL4R	3566	broad.mit.edu	37	16	27374928	27374928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:27374928C>T	uc002don.2	+	11	2497	c.2255C>T	c.(2254-2256)TCC>TTC	p.S752F	IL4R_uc002dop.3_Missense_Mutation_p.S737F|IL4R_uc010bxy.2_Missense_Mutation_p.S752F|IL4R_uc002doo.2_Missense_Mutation_p.S592F	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	752	Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						GGAGACAGGTCCTCGCCCCCT	0.667													16	59					0	0	0.006122	0	0
GTF3C1	2975	broad.mit.edu	37	16	27483215	27483215	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:27483215C>T	uc002dov.1	-	30	4420	c.4380G>A	c.(4378-4380)AAG>AAA	p.K1460K	GTF3C1_uc002dou.2_Silent_p.K1460K	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1460						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GAACGTGGTCCTTGTACTCCC	0.632													30	54					0	0	0.013726	0	0
XPO6	23214	broad.mit.edu	37	16	28112999	28112999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:28112999C>T	uc002dpa.1	-	23	3557	c.3056G>A	c.(3055-3057)CGG>CAG	p.R1019Q	XPO6_uc002dpb.1_Missense_Mutation_p.R1005Q|XPO6_uc010vcp.1_Missense_Mutation_p.R1018Q	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	1019					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						CATGGCAGTCCGGAAGATCTT	0.577													9	51					0	0	0.004482	0	0
SBK1	388228	broad.mit.edu	37	16	28331843	28331843	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:28331843C>T	uc002dpd.2	+	4	1665	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	292	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						TGCGCATGTTCCAGCGCTTAC	0.662													5	15					0	0	0.014758	0	0
MVP	9961	broad.mit.edu	37	16	29853076	29853076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:29853076C>T	uc002dui.2	+	9	1435	c.1351C>T	c.(1351-1353)CCC>TCC	p.P451S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.P451S|MVP_uc010vea.1_Missense_Mutation_p.P45S	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	451	MVP 8.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GCCCTTGGCGCCCCGGAACAA	0.657													8	35					0	0	0.004482	0	0
ITGAL	3683	broad.mit.edu	37	16	30507442	30507442	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:30507442C>T	uc002dyi.3	+	14	1704	c.1528C>T	c.(1528-1530)CTG>TTG	p.L510L	ITGAL_uc002dyj.3_Silent_p.L427L|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	510	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity	p.L510P(1)		ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGTCTCAGAGCTGCAGGGGGA	0.562													63	130					0	0	0.014410	0	0
PHKG2	5261	broad.mit.edu	37	16	30762461	30762461	+	Nonsense_Mutation	SNP	C	T	T	rs137853590		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:30762461C>T	uc002dzk.1	+	3	223	c.130C>T	c.(130-132)CGA>TGA	p.R44*	PHKG2_uc002dzi.1_Nonsense_Mutation_p.R44*|PHKG2_uc002dzj.1_5'UTR|PHKG2_uc002dzl.1_Nonsense_Mutation_p.R44*	NM_000294	NP_000285	P15735	PHKG2_HUMAN	phosphorylase kinase, gamma 2 (testis)	44	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			ovary(1)	1			Colorectal(24;0.198)			TTGTGTTCATCGAGCTACTGG	0.592													23	86					0	0	0.024334	0	0
BCL7C	9274	broad.mit.edu	37	16	30904032	30904032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:30904032G>A	uc002dzv.2	-	4	451	c.317C>T	c.(316-318)TCC>TTC	p.S106F	BCL7C_uc002dzt.1_Missense_Mutation_p.S106F|uc002dzu.2_Intron|MIR762_hsa-mir-762|MI0003892_5'Flank	NM_004765	NP_004756	Q8WUZ0	BCL7C_HUMAN	B-cell CLL/lymphoma 7C	106					apoptosis						0			Colorectal(24;0.198)			CTTTTGCAGGGAACCTTCCGA	0.627													32	125					0	0	0.023175	0	0
ZNF646	9726	broad.mit.edu	37	16	31090315	31090315	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:31090315C>T	uc002eap.2	+	2	2959	c.2670C>T	c.(2668-2670)TTC>TTT	p.F890F		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	890	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GCATGATCTTCCCTGGGCGGG	0.642													28	69					0	0	0.006320	0	0
PRSS8	5652	broad.mit.edu	37	16	31144211	31144211	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:31144211C>T	uc002ebc.3	-	4	662	c.330G>A	c.(328-330)GAG>GAA	p.E110E	PRSS8_uc010vfe.1_Intron	NM_002773	NP_002764	Q16651	PRSS8_HUMAN	prostasin preproprotein	110	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity				0						CCTTGGCGTCCTCGGAGTAGG	0.632													43	231					0	0	0.008740	0	0
ITGAX	3687	broad.mit.edu	37	16	31374258	31374258	+	Silent	SNP	C	T	T	rs147426364		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:31374258C>T	uc002ebu.1	+	13	1429	c.1362C>T	c.(1360-1362)ATC>ATT	p.I454I	ITGAX_uc002ebt.2_Silent_p.I454I|ITGAX_uc010vfk.1_Silent_p.I104I	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	454	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCCTTCAGATCGGCTCCTACT	0.672													64	156					0	0	0.014410	0	0
SHCBP1	79801	broad.mit.edu	37	16	46617964	46617964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:46617964G>A	uc002eec.3	-	11	1542	c.1502C>T	c.(1501-1503)ACC>ATC	p.T501I		NM_024745	NP_079021	Q8NEM2	SHCBP_HUMAN	SHC SH2-domain binding protein 1	501	PbH1 4.									ovary(1)|breast(1)	2		all_cancers(37;0.00404)|all_epithelial(9;0.00527)|all_lung(18;0.0413)|Lung NSC(13;0.213)				GTCACTCAGGGTGCACTGACT	0.423													7	14					0	0	0.003080	0	0
NETO2	81831	broad.mit.edu	37	16	47117342	47117342	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:47117342G>A	uc002eer.1	-	9	1753	c.1368C>T	c.(1366-1368)TCC>TCT	p.S456S	NETO2_uc002eeq.1_Silent_p.S191S|NETO2_uc010vgf.1_Silent_p.S313S	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	456	Cytoplasmic (Potential).					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				GAAGTTCCATGGAACTGAGGT	0.507										HNSCC(25;0.065)			95	200					0	0	0.014410	0	0
ITFG1	81533	broad.mit.edu	37	16	47462722	47462722	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:47462722A>C	uc002eet.2	-	6	710	c.648T>G	c.(646-648)TTT>TTG	p.F216L	ITFG1_uc010vgh.1_Missense_Mutation_p.F103L	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	216						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				CACCTGCTGTAAAATCTTCAG	0.318													10	70					0	0	0.013537	0	0
NKD1	85407	broad.mit.edu	37	16	50667135	50667136	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:50667135_50667136CC>TT	uc002egg.1	+	10	1080_1081	c.856_857CC>TT	c.(856-858)CCC>TTC	p.P286F		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	286					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GTCAGAACTGCCCCCCCGCACC	0.485													23	115					0	0	0.004672	0	0
NOD2	64127	broad.mit.edu	37	16	50765676	50765676	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:50765676C>T	uc002egm.1	+	12	3174	c.3069C>T	c.(3067-3069)TTC>TTT	p.F1023F	NOD2_uc010vgq.1_Silent_p.F68F	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	1023	LRR 9.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GGAACACTTTCTCTCTAGAGG	0.478													25	54					0	0	0.006320	0	0
CYLD	1540	broad.mit.edu	37	16	50783723	50783723	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:50783723C>T	uc002egp.1	+	4	529	c.114C>T	c.(112-114)CTC>CTT	p.L38L	CYLD_uc002egn.1_Silent_p.L38L|CYLD_uc002ego.2_Silent_p.L38L|CYLD_uc010cbs.1_Silent_p.L38L|CYLD_uc002egq.1_Silent_p.L38L|CYLD_uc002egr.1_Silent_p.L38L|CYLD_uc002egs.1_Silent_p.L38L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	38					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				CACAAAAGCTCCTTAAAGTAC	0.408			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				26	62					0	0	0.006320	0	0
SALL1	6299	broad.mit.edu	37	16	51173074	51173074	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:51173074T>C	uc010vgs.1	-	2	3090	c.3059A>G	c.(3058-3060)TAT>TGT	p.Y1020C	SALL1_uc010vgr.1_Missense_Mutation_p.Y923C|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1020	C2H2-type 6.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ATGACTTCTATAGTGAATGTC	0.413													57	110					0	0	0.014410	0	0
SALL1	6299	broad.mit.edu	37	16	51174202	51174202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:51174202G>A	uc010vgs.1	-	2	1962	c.1931C>T	c.(1930-1932)TCC>TTC	p.S644F	SALL1_uc010vgr.1_Missense_Mutation_p.S547F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	644					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCCGCTGGGGAGCTCAGGAC	0.622													14	92					0	0	0.016723	0	0
IRX6	79190	broad.mit.edu	37	16	55361597	55361597	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:55361597C>T	uc002ehy.2	+	4	1046	c.513C>T	c.(511-513)AAC>AAT	p.N171N	IRX6_uc002ehx.2_Silent_p.N171N|IRX6_uc010ccb.1_RNA	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	171	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						ACCGCAAAAACCCCTACCCCA	0.612													13	98					0	0	0.016723	0	0
CES7	221223	broad.mit.edu	37	16	55905641	55905641	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:55905641G>A	uc002eip.2	-	3	462	c.313C>T	c.(313-315)CAA>TAA	p.Q105*	CES7_uc002eio.2_Nonsense_Mutation_p.Q105*|CES7_uc002eiq.2_5'UTR|CES7_uc002eir.2_5'UTR	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	105						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		AGCATATGTTGATCTAAGAGC	0.512													6	43					0	0	0.001984	0	0
SLC12A3	6559	broad.mit.edu	37	16	56906647	56906647	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:56906647C>T	uc010ccm.2	+	8	1073	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	SLC12A3_uc002ekd.3_Silent_p.F348F|SLC12A3_uc010ccn.2_Silent_p.F347F	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	348	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CCATCTTCTTCCCCTCGGCCA	0.567													18	107					0	0	0.004990	0	0
CETP	1071	broad.mit.edu	37	16	57004989	57004989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:57004989C>T	uc002eki.2	+	6	629	c.572C>T	c.(571-573)ACC>ATC	p.T191I	CETP_uc002ekj.2_Missense_Mutation_p.T191I	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	191					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						ATCTCCTTCACCCTGAAGCTG	0.552													34	80					0	0	0.023175	0	0
CCDC102A	92922	broad.mit.edu	37	16	57555046	57555046	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:57555046C>T	uc002elw.2	-	4	1068	c.855G>A	c.(853-855)GGG>GGA	p.G285G		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	285	Potential.									ovary(1)	1						GGCTGAGCTCCCCCTCTAGCT	0.567													34	133					0	0	0.021022	0	0
KATNB1	10300	broad.mit.edu	37	16	57787413	57787413	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:57787413C>T	uc002eml.1	+	12	1533	c.1159C>T	c.(1159-1161)CAG>TAG	p.Q387*		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	387	Interaction with PAFAH1B1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				CGAGATCTTCCAGCCCAAGAA	0.677													21	76					0	0	0.014323	0	0
CNOT1	23019	broad.mit.edu	37	16	58555201	58555201	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:58555201A>G	uc002env.2	-	48	7231	c.6938T>C	c.(6937-6939)ATT>ACT	p.I2313T	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.I2308T|CNOT1_uc002ent.2_Missense_Mutation_p.I251T|CNOT1_uc010vik.1_Missense_Mutation_p.I1270T	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2313					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CCTATTTACAATCAACCGTTC	0.368													51	110					0	0	0.014410	0	0
CNOT1	23019	broad.mit.edu	37	16	58559989	58559989	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:58559989A>G	uc002env.2	-	45	6800	c.6507T>C	c.(6505-6507)ACT>ACC	p.T2169T	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.T2164T|CNOT1_uc002ent.2_Silent_p.T107T|CNOT1_uc010vik.1_Silent_p.T1126T	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2169					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GCATTACTCCAGTGAAATTGG	0.408													47	97					0	0	0.014410	0	0
CDH8	1006	broad.mit.edu	37	16	61761101	61761101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:61761101G>A	uc002eog.1	-	9	1685	c.1433C>T	c.(1432-1434)TCA>TTA	p.S478L	CDH8_uc002eoh.2_Missense_Mutation_p.S247L	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	478	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		AGGTACTCGTGATATCTGACT	0.413													8	49					0	0	0.003080	0	0
CDH8	1006	broad.mit.edu	37	16	61761118	61761119	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:61761118_61761119CC>TT	uc002eog.1	-	9	1667_1668	c.1415_1416GG>AA	c.(1414-1416)AGG>AAA	p.R472K	CDH8_uc002eoh.2_Missense_Mutation_p.R241K	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	472	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GACTGTGGTTCCCTATGGGAAG	0.411													12	43					0	0	0.004672	0	0
CDH8	1006	broad.mit.edu	37	16	61851630	61851630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:61851630C>T	uc002eog.1	-	7	1282	c.1030G>A	c.(1030-1032)GAC>AAC	p.D344N	CDH8_uc002eoh.2_Missense_Mutation_p.D113N	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	344	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GTCTCAAAGTCCAGAGGCTGT	0.438													13	25					0	0	0.016723	0	0
KCTD19	146212	broad.mit.edu	37	16	67323518	67323518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67323518C>T	uc002esu.2	-	16	2786	c.2735G>A	c.(2734-2736)AGG>AAG	p.R912K	KCTD19_uc002est.2_Missense_Mutation_p.R684K|KCTD19_uc010vjj.1_Missense_Mutation_p.R655K	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	912						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		AGAGACAGACCTAGACAGGCC	0.537													40	87					0	0	0.009718	0	0
KCTD19	146212	broad.mit.edu	37	16	67325697	67325697	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67325697C>T	uc002esu.2	-	13	2313	c.2262G>A	c.(2260-2262)GTG>GTA	p.V754V	KCTD19_uc002est.2_Silent_p.V526V|KCTD19_uc010vjj.1_Silent_p.V497V	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	754						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CTAGGCTGTCCACCTCACTGG	0.507													22	52					0	0	0.018920	0	0
KCTD19	146212	broad.mit.edu	37	16	67327982	67327982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67327982C>T	uc002esu.2	-	12	1734	c.1683G>A	c.(1681-1683)ATG>ATA	p.M561I	KCTD19_uc002est.2_Missense_Mutation_p.M333I|KCTD19_uc010vjj.1_Missense_Mutation_p.M304I	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	561						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CAGCCTCATCCATCTGGTTGG	0.567													55	297					0	0	0.014410	0	0
LRRC36	55282	broad.mit.edu	37	16	67412536	67412536	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67412536C>T	uc002esv.2	+	12	1870	c.1851C>T	c.(1849-1851)CTC>CTT	p.L617L	LRRC36_uc002esw.2_RNA|LRRC36_uc002esx.2_Silent_p.L496L|LRRC36_uc010vjk.1_Silent_p.L392L|LRRC36_uc010vjl.1_Silent_p.L89L|LRRC36_uc002esy.2_Silent_p.L127L	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	617	Potential.										0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		AGGAAAACCTCATTTTGTCAG	0.358													17	68					0	0	0.028581	0	0
CTCF	10664	broad.mit.edu	37	16	67650694	67650694	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67650694C>T	uc002etl.2	+	5	1289	c.999C>T	c.(997-999)ACC>ACT	p.T333T	CTCF_uc010cek.2_Silent_p.T5T	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	333	C2H2-type 3.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		CCTTTGTGACCAGTGGAGAAT	0.498													58	294					0	0	0.014410	0	0
ACD	65057	broad.mit.edu	37	16	67694231	67694231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67694231G>A	uc002etq.3	-	1	488	c.151C>T	c.(151-153)CTC>TTC	p.L51F	ACD_uc002etp.3_Missense_Mutation_p.L51F|ACD_uc002etr.3_Missense_Mutation_p.L51F|ACD_uc010vjt.1_Missense_Mutation_p.L41F|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	51					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGCCGGAGGAGGAGGCCCCGC	0.741													21	26					0	0	0.010504	0	0
RANBP10	57610	broad.mit.edu	37	16	67763291	67763291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:67763291G>A	uc002eud.2	-	10	1360	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F	RANBP10_uc010ceo.2_Missense_Mutation_p.S186F|RANBP10_uc010vju.1_Missense_Mutation_p.S359F|RANBP10_uc010vjv.1_Missense_Mutation_p.S298F|RANBP10_uc010vjw.1_Missense_Mutation_p.S76F	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	415	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		ggaggaggaggaggacgagga	0.408													10	47					0	0	0.006214	0	0
DDX28	55794	broad.mit.edu	37	16	68056770	68056770	+	Silent	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:68056770C>G	uc002evh.1	-	1	1190	c.336G>C	c.(334-336)GCG>GCC	p.A112A	DUS2L_uc002evi.2_5'Flank|DUS2L_uc002evj.2_5'Flank|DUS2L_uc010vkk.1_5'Flank	NM_018380	NP_060850	Q9NUL7	DDX28_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	112						mitochondrial nucleoid|nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0116)|Epithelial(162;0.0474)|all cancers(182;0.233)		CCTCCTGTTGCGCGCGCTCGA	0.692													4	19					0	0	0.009096	0	0
NFATC3	4775	broad.mit.edu	37	16	68156594	68156594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:68156594C>T	uc002evo.1	+	2	1018	c.808C>T	c.(808-810)CCC>TCC	p.P270S	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.P270S|NFATC3_uc002evm.1_Missense_Mutation_p.P270S|NFATC3_uc002evn.1_Missense_Mutation_p.P270S|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	270	3 X SP repeats.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GCCCACATCCCCCTGTGGGAA	0.582													44	70					0	0	0.009718	0	0
ESRP2	80004	broad.mit.edu	37	16	68266285	68266285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:68266285G>A	uc010cfa.1	-	8	1161	c.973C>T	c.(973-975)CGC>TGC	p.R325C	ESRP2_uc002evp.1_Intron|ESRP2_uc002evq.1_Missense_Mutation_p.R315C	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	325	RRM 1.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						TCAATATAGCGGACGCCCATG	0.622													32	88					0	0	0.017118	0	0
HYDIN	54768	broad.mit.edu	37	16	70841804	70841804	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:70841804G>A	uc002ezr.2	-	86	15170	c.15042C>T	c.(15040-15042)ATC>ATT	p.I5014I	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5015										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CAAAGAGGGGGATGATATACT	0.542													36	101					0	0	0.027894	0	0
HYDIN	54768	broad.mit.edu	37	16	70926384	70926384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:70926384C>T	uc002ezr.2	-	56	9422	c.9294G>A	c.(9292-9294)ATG>ATA	p.M3098I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3099										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGACTGAGATCATGGAATTTA	0.423													11	62					0	0	0.016723	0	0
HYDIN	54768	broad.mit.edu	37	16	71025993	71025993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:71025993C>T	uc002ezr.2	-	24	3893	c.3765G>A	c.(3763-3765)ATG>ATA	p.M1255I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1255										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CATTTAAATCCATCTCGGGGG	0.453													9	69					0	0	0.006214	0	0
HYDIN	54768	broad.mit.edu	37	16	71026020	71026020	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:71026020G>A	uc002ezr.2	-	24	3866	c.3738C>T	c.(3736-3738)ATC>ATT	p.I1246I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1246										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGTAACTAGGATTGCTGGTG	0.458													23	53					0	0	0.024334	0	0
HYDIN	54768	broad.mit.edu	37	16	71220705	71220705	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:71220705G>A	uc002ezr.2	-	2	222	c.94C>T	c.(94-96)CTG>TTG	p.L32L	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Silent_p.L32L|HYDIN_uc010vmc.1_Silent_p.L49L|HYDIN_uc010vmd.1_Silent_p.L59L|HYDIN_uc002ezw.3_Silent_p.L49L	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	32										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTGGACTCAGGGGTGGCAAA	0.398													11	39					0	0	0.013537	0	0
TXNL4B	54957	broad.mit.edu	37	16	72123027	72123027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:72123027G>A	uc002fca.2	-	3	454	c.143C>T	c.(142-144)ACC>ATC	p.T48I	TXNL4B_uc010cgl.2_RNA|TXNL4B_uc010vmn.1_Missense_Mutation_p.T48I|TXNL4B_uc010vmo.1_Missense_Mutation_p.T48I	NM_017853	NP_060323	Q9NX01	TXN4B_HUMAN	thioredoxin-like 4B	48					mitosis|mRNA processing|RNA splicing	spliceosomal complex				ovary(1)	1						GTCAGAAGAGGTCTTAGAAAG	0.368													34	57					0	0	0.013726	0	0
PMFBP1	83449	broad.mit.edu	37	16	72166731	72166731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:72166731C>T	uc002fcc.3	-	10	1535	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E455K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E310K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	455	Potential.									ovary(2)	2		Ovarian(137;0.179)				CACTCCGCCTCCTTGGACTTG	0.577													34	156					0	0	0.010818	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184567	72184567	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:72184567G>A	uc002fcc.3	-	5	748	c.576C>T	c.(574-576)ATC>ATT	p.I192I	PMFBP1_uc002fcd.2_Silent_p.I192I|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Silent_p.I47I	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	192	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTAGTAACTCGATGTTGCTCA	0.527													35	147					0	0	0.019004	0	0
ZFHX3	463	broad.mit.edu	37	16	72821663	72821663	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:72821663G>A	uc002fck.2	-	10	11185	c.10512C>T	c.(10510-10512)GTC>GTT	p.V3504V	uc002fcj.1_RNA|ZFHX3_uc002fcl.2_Silent_p.V2590V	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3504					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				cgccgGTGGGGACGTGAAGCA	0.438													19	55					0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	16	74419271	74419271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:74419271G>A	uc010vmt.1	+	2	99	c.98G>A	c.(97-99)CGA>CAA	p.R33Q						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		TTCTGGTCTCGAAATGGACAT	0.363													38	207					0	0	0.014410	0	0
GLG1	2734	broad.mit.edu	37	16	74524939	74524939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:74524939C>T	uc002fcy.3	-	8	1459	c.1409G>A	c.(1408-1410)CGA>CAA	p.R470Q	GLG1_uc002fcx.2_Missense_Mutation_p.R470Q|GLG1_uc002fcw.3_Missense_Mutation_p.R459Q|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	470	Extracellular (Potential).|Cys-rich GLG1 6.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CTTCTCCCCTCGAACTACTTT	0.493													23	132					0	0	0.018920	0	0
BCAR1	9564	broad.mit.edu	37	16	75269071	75269071	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:75269071G>A	uc002fdv.2	-	5	1849	c.1726C>T	c.(1726-1728)CTG>TTG	p.L576L	BCAR1_uc002fdt.2_Silent_p.L29L|BCAR1_uc002fdu.2_Silent_p.L366L|BCAR1_uc010cgu.2_Silent_p.L565L|BCAR1_uc010vna.1_Silent_p.L574L|BCAR1_uc010vnb.1_Silent_p.L622L|BCAR1_uc002fdw.2_Silent_p.L576L|BCAR1_uc010vnc.1_Silent_p.L428L|BCAR1_uc010vnd.1_Silent_p.L594L|BCAR1_uc002fdx.2_Silent_p.L594L	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	576	Ser-rich.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCCGGTCCAGGTCCTCAAGG	0.677													23	40					0	0	0.024334	0	0
CHST5	23563	broad.mit.edu	37	16	75563461	75563461	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:75563461G>A	uc002fei.2	-	3	2217	c.822C>T	c.(820-822)ATC>ATT	p.I274I	CHST5_uc002fej.1_Silent_p.I280I	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	274	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CGGCCTCGGCGATGCGCACGT	0.716													45	88					0	0	0.014410	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482006	76482006	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:76482006C>T	uc002feu.1	+	7	1021	c.636C>T	c.(634-636)TTC>TTT	p.F212F	CNTNAP4_uc002fev.1_Silent_p.F124F|CNTNAP4_uc010chb.1_Silent_p.F187F|CNTNAP4_uc002fex.1_Silent_p.F215F|CNTNAP4_uc002few.2_Silent_p.F187F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	212	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTTTGAAATTCAAAACCATGC	0.378													22	40					0	0	0.014323	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76592521	76592521	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:76592521A>T	uc002feu.1	+	26	4253	c.3868A>T	c.(3868-3870)AAA>TAA	p.K1290*	CNTNAP4_uc002fev.1_Nonsense_Mutation_p.K1154*|CNTNAP4_uc010chb.1_Nonsense_Mutation_p.K1217*|CNTNAP4_uc002fex.1_Nonsense_Mutation_p.K1293*	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1290	Cytoplasmic (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GGCTGTTCTGAAAAGTGAGCT	0.348													15	23					0	0	0.024245	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77334280	77334280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:77334280G>A	uc002ffc.3	-	17	2973	c.2554C>T	c.(2554-2556)CCA>TCA	p.P852S	ADAMTS18_uc010chc.1_Missense_Mutation_p.P440S|ADAMTS18_uc002ffe.1_Missense_Mutation_p.P548S	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	852	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GCTATCCCTGGATTTTTGCCT	0.433													16	65					0	0	0.024245	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353911	77353911	+	Silent	SNP	G	A	A	rs145904992		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:77353911G>A	uc002ffc.3	-	16	2786	c.2367C>T	c.(2365-2367)CTC>CTT	p.L789L	ADAMTS18_uc010chc.1_Silent_p.L377L|ADAMTS18_uc002ffe.1_Silent_p.L485L	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	789	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTCGAACTGCGAGGTAACTGG	0.537													16	35					0	0	0.024245	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401601	77401601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:77401601C>T	uc002ffc.3	-	4	934	c.515G>A	c.(514-516)CGA>CAA	p.R172Q	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	172					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTCATTTTTTCGTGTCCTTAT	0.463													15	66					0	0	0.028581	0	0
NUDT7	283927	broad.mit.edu	37	16	77775586	77775586	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:77775586C>T	uc010chd.2	+	4	525	c.456C>T	c.(454-456)TTC>TTT	p.F152F	NUDT7_uc010vnj.1_Silent_p.F99F	NM_001105663	NP_001099133	P0C024	NUDT7_HUMAN	nudix motif 7	152	Nudix hydrolase.				nucleoside diphosphate metabolic process	peroxisome	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|magnesium ion binding|manganese ion binding			ovary(1)|kidney(1)	2						TGGCCTATTTCCTGCATCCAC	0.458													26	115					0	0	0.009535	0	0
TAF1C	9013	broad.mit.edu	37	16	84212933	84212933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:84212933C>T	uc002fhn.2	-	14	2452	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	TAF1C_uc002fhm.2_Missense_Mutation_p.E648K|TAF1C_uc010vnx.1_Missense_Mutation_p.E716K|TAF1C_uc010vny.1_Missense_Mutation_p.E333K|TAF1C_uc010vnz.1_Missense_Mutation_p.E410K|TAF1C_uc002fho.2_Missense_Mutation_p.E265K|TAF1C_uc010voa.1_Missense_Mutation_p.E410K|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	742					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						CTCCCGGGCTCCGAGGTCCTG	0.687													6	31					0	0	0.001984	0	0
WFDC1	58189	broad.mit.edu	37	16	84360501	84360501	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:84360501G>A	uc002fhw.2	+	6	795	c.618G>A	c.(616-618)AAG>AAA	p.K206K	WFDC1_uc002fhv.2_Silent_p.K206K	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	206					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						GTGACTCAAAGAATGTGGCAG	0.502													13	121					0	0	0.024245	0	0
USP10	9100	broad.mit.edu	37	16	84778881	84778881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:84778881C>T	uc002fii.2	+	4	936	c.794C>T	c.(793-795)TCA>TTA	p.S265L	USP10_uc010voe.1_Missense_Mutation_p.S269L|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	265					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GACACCCTGTCAAGGACAGCT	0.592													8	32					0	0	0.003080	0	0
IRF8	3394	broad.mit.edu	37	16	85952285	85952285	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr16:85952285C>T	uc002fjh.2	+	7	921	c.864C>T	c.(862-864)TTC>TTT	p.F288F	IRF8_uc010chp.2_Intron	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	288					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				AGGGCGTGTTCGTCAAGCGGC	0.682													21	40					0	0	0.010504	0	0
RPH3AL	9501	broad.mit.edu	37	17	131580	131580	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:131580C>T	uc002frd.1	-	4	461	c.417G>A	c.(415-417)AAG>AAA	p.K139K	RPH3AL_uc010vpy.1_Silent_p.K139K|RPH3AL_uc002fre.1_Silent_p.K139K|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	139	RabBD.|FYVE-type.				exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		CACTGCAGATCTTACACAGCC	0.592													57	59					0	0	0.014410	0	0
MNT	4335	broad.mit.edu	37	17	2298631	2298631	+	Missense_Mutation	SNP	G	A	A	rs138518103		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:2298631G>A	uc002fur.2	-	2	443	c.191C>T	c.(190-192)CCC>CTC	p.P64L		NM_020310	NP_064706	Q99583	MNT_HUMAN	MAX binding protein	64					multicellular organismal development|negative regulation of cell proliferation|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			skin(1)	1				Colorectal(2;1.37e-05)|READ - Rectum adenocarcinoma(2;8.68e-05)		cagaggcaggggtggCGCCTC	0.299													38	56					0	0	0.010771	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2923775	2923775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:2923775C>T	uc010ckd.2	+	19	1727	c.1637C>T	c.(1636-1638)CCA>CTA	p.P546L	RAP1GAP2_uc010cke.2_Missense_Mutation_p.P531L	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	546					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CGACAGCCTCCAGTGGTGGCG	0.612													18	19					0	0	0.007413	0	0
OR1D2	4991	broad.mit.edu	37	17	2995956	2995956	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:2995956T>C	uc010vrb.1	-	1	335	c.335A>G	c.(334-336)AAC>AGC	p.N112S		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	112	Helical; Name=3; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						CAGGATGAGGTTGTCCAGGGC	0.547													46	56					0	0	0.014410	0	0
ZZEF1	23140	broad.mit.edu	37	17	3990781	3990781	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:3990781G>A	uc002fxe.2	-	14	2353	c.2289C>T	c.(2287-2289)TTC>TTT	p.F763F	ZZEF1_uc002fxk.1_Silent_p.F763F	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	763							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAAGACCCGCGAAGTCCAGAA	0.303													27	41					0	0	0.009535	0	0
NLRP1	22861	broad.mit.edu	37	17	5434015	5434015	+	Silent	SNP	G	A	A	rs35985646		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:5434015G>A	uc002gci.2	-	12	3861	c.3306C>T	c.(3304-3306)TTC>TTT	p.F1102F	NLRP1_uc002gcg.1_Silent_p.F1106F|NLRP1_uc002gck.2_Silent_p.F1102F|NLRP1_uc002gcj.2_Silent_p.F1072F|NLRP1_uc002gcl.2_Silent_p.F1072F|NLRP1_uc002gch.3_Silent_p.F1102F|NLRP1_uc010clh.2_Silent_p.F1102F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1102					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CAGCTACAGGGAAGTGAACTC	0.368													23	43					0	0	0.016522	0	0
SLC2A4	6517	broad.mit.edu	37	17	7189193	7189193	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7189193A>G	uc002gfp.2	+	10	1492	c.1292A>G	c.(1291-1293)AAC>AGC	p.N431S	SLC2A4_uc002gfo.2_Missense_Mutation_p.N431S|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	431	Helical; Name=11; (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						TGGACGAGCAACTTCATCATT	0.637													39	51					0	0	0.008740	0	0
NEURL4	84461	broad.mit.edu	37	17	7221234	7221234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7221234G>A	uc002gga.1	-	26	4085	c.4078C>T	c.(4078-4080)CCG>TCG	p.P1360S	GPS2_uc002gfv.1_5'Flank|GPS2_uc002gfw.1_5'Flank|GPS2_uc002gfx.1_5'Flank|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Missense_Mutation_p.P1358S	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1360							protein binding	p.P1358S(1)|p.P1360S(1)		upper_aerodigestive_tract(1)|ovary(1)	2						CGCTTTGGCGGAGGCATGAAA	0.612													40	64					0	0	0.010771	0	0
SPEM1	374768	broad.mit.edu	37	17	7324589	7324589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7324589G>A	uc002ggv.2	+	3	620	c.595G>A	c.(595-597)GGC>AGC	p.G199S	FGF11_uc010vtw.1_Intron	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	199					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				GTCCGAGCTGGGCCTAAGGGC	0.637													37	62					0	0	0.007835	0	0
TP53	7157	broad.mit.edu	37	17	7578530	7578530	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7578530A>G	uc002gim.2	-	5	594	c.400T>C	c.(400-402)TTT>CTT	p.F134L	TP53_uc002gig.1_Missense_Mutation_p.F134L|TP53_uc002gih.2_Missense_Mutation_p.F134L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.F2L|TP53_uc010cng.1_Missense_Mutation_p.F2L|TP53_uc002gii.1_Missense_Mutation_p.F2L|TP53_uc010cnh.1_Missense_Mutation_p.F134L|TP53_uc010cni.1_Missense_Mutation_p.F134L|TP53_uc002gij.2_Missense_Mutation_p.F134L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.F41L|TP53_uc002gio.2_Missense_Mutation_p.F2L|TP53_uc010vug.1_Missense_Mutation_p.F95L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	134	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		F -> V (in sporadic cancers; somatic mutation).|F -> C (in sporadic cancers; somatic mutation).|F -> L (in sporadic cancers; somatic mutation).|F -> I (in sporadic cancers; somatic mutation).|F -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.F134L(16)|p.F134V(9)|p.0?(7)|p.F134C(6)|p.C135fs*35(5)|p.F134S(3)|p.N131fs*27(2)|p.V73fs*9(1)|p.F134_T140>S(1)|p.S127fs*36(1)|p.F134fs*14(1)|p.Y126fs*11(1)|p.F134fs*39(1)|p.K132_A138delKMFCQLA(1)|p.S127_Q136del10(1)|p.C135T(1)|p.M133fs*13(1)|p.F134F(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGTTGGCAAAACATCTTGTTG	0.567		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			18	32					0	0	0.010504	0	0
DNAH2	146754	broad.mit.edu	37	17	7695608	7695608	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7695608G>A	uc002giu.1	+	45	7106	c.7092G>A	c.(7090-7092)CGG>CGA	p.R2364R		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2364					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCAAAATACGGAGTTGGACAT	0.532													73	122					0	0	0.014410	0	0
ALOX15B	247	broad.mit.edu	37	17	7943291	7943291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7943291G>A	uc002gju.2	+	3	555	c.439G>A	c.(439-441)GAG>AAG	p.E147K	ALOX15B_uc002gjv.2_Missense_Mutation_p.E147K|ALOX15B_uc002gjw.2_Missense_Mutation_p.E147K|ALOX15B_uc010vun.1_Missense_Mutation_p.E147K|ALOX15B_uc010cnp.2_5'UTR	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	147	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						GGCCCGGCAGGAGATGTACCA	0.607													27	45					0	0	0.024334	0	0
ALOX12B	242	broad.mit.edu	37	17	7984078	7984078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:7984078C>T	uc002gjy.1	-	5	809	c.548G>A	c.(547-549)GGA>GAA	p.G183E	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	183	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						AATTGGGAATCCCGGAATATA	0.602										Multiple Myeloma(8;0.094)	OREG0024153	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	69	113					0	0	0.014410	0	0
SPDYE4	388333	broad.mit.edu	37	17	8660620	8660621	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:8660620_8660621GG>AA	uc010cnz.1	-	2	476_477	c.299_300CC>TT	c.(298-300)TCC>TTT	p.S100F		NM_001128076	NP_001121548	A6NLX3	SPDE4_HUMAN	speedy homolog E4	100											0						CAGGGAGCACGGAGGATGCTCG	0.53													4	3					0	0	0.004672	0	0
MFSD6L	162387	broad.mit.edu	37	17	8701791	8701791	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:8701791C>T	uc002glp.1	-	1	796	c.648G>A	c.(646-648)GGG>GGA	p.G216G		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	216						integral to membrane				central_nervous_system(1)	1						CGGGCCCTTTCCCCCCAGGAA	0.572													56	96					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10358002	10358002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10358002G>A	uc002gmn.2	-	22	2672	c.2561C>T	c.(2560-2562)GCC>GTC	p.A854V	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	854	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTCATGTTGGCCATCTCCTT	0.448													40	78					0	0	0.027894	0	0
MYH4	4622	broad.mit.edu	37	17	10366423	10366423	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10366423C>T	uc002gmn.2	-	10	999	c.888G>A	c.(886-888)AAG>AAA	p.K296K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	296	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTCTGGTTTCTTATTGGACA	0.383													23	43					0	0	0.021523	0	0
MYH1	4619	broad.mit.edu	37	17	10401153	10401153	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10401153C>T	uc002gmo.2	-	31	4357	c.4263G>A	c.(4261-4263)ACG>ACA	p.T1421T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1421	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCCTCTGCTTCGTCTTCTCAA	0.473													46	61					0	0	0.013114	0	0
MYH1	4619	broad.mit.edu	37	17	10408518	10408518	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10408518G>A	uc002gmo.2	-	21	2491	c.2397C>T	c.(2395-2397)TTC>TTT	p.F799F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	799	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTCTTGCCAAGAACCCTCTGC	0.443													32	51					0	0	0.013726	0	0
MYH1	4619	broad.mit.edu	37	17	10408543	10408543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10408543C>T	uc002gmo.2	-	21	2466	c.2372G>A	c.(2371-2373)CGA>CAA	p.R791Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	791	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGCCTGGGTTCGGGTAATCAG	0.458													37	50					0	0	0.027894	0	0
MYH1	4619	broad.mit.edu	37	17	10418209	10418209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10418209C>T	uc002gmo.2	-	6	603	c.509G>A	c.(508-510)CGG>CAG	p.R170Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	170	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGATTCTCCCGATCTAGAAG	0.323													39	78					0	0	0.009718	0	0
MYH2	4620	broad.mit.edu	37	17	10426966	10426966	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10426966C>T	uc010coi.2	-	37	5447	c.5319G>A	c.(5317-5319)GAG>GAA	p.E1773E	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.E1773E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1773	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCTTCAGCTCCTCAGCCATCA	0.493													56	92					0	0	0.014410	0	0
MYH2	4620	broad.mit.edu	37	17	10428595	10428595	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10428595C>T	uc010coi.2	-	33	4736	c.4608G>A	c.(4606-4608)AAG>AAA	p.K1536K	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.K1536K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1536	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CCACTTGTTTCTTTATTTTCT	0.373													35	49					0	0	0.019004	0	0
MYH2	4620	broad.mit.edu	37	17	10429022	10429022	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10429022C>T	uc010coi.2	-	31	4487	c.4359G>A	c.(4357-4359)AGG>AGA	p.R1453R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1453R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1453	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TATCGAAGTTCCTTTGCTTTT	0.483													45	62					0	0	0.013114	0	0
MYH2	4620	broad.mit.edu	37	17	10432295	10432295	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:10432295G>A	uc010coi.2	-	27	3584	c.3456C>T	c.(3454-3456)ATC>ATT	p.I1152I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I1152I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1152	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCCTCTCGCTGATCTCCTCCA	0.622													55	115					0	0	0.014410	0	0
MYOCD	93649	broad.mit.edu	37	17	12656353	12656353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:12656353C>T	uc002gnn.2	+	10	2047	c.1748C>T	c.(1747-1749)TCC>TTC	p.S583F	MYOCD_uc002gno.2_Missense_Mutation_p.S583F|MYOCD_uc002gnp.1_Missense_Mutation_p.S487F|MYOCD_uc002gnq.2_Missense_Mutation_p.S302F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	583					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCTTTTGCATCCCAAGTACCT	0.517													38	54					0	0	0.019004	0	0
MEIS3P1	4213	broad.mit.edu	37	17	15690624	15690624	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:15690624G>C	uc002gpc.2	+	1	461	c.440G>C	c.(439-441)AGT>ACT	p.S147T		NR_002211				RecName: Full=Homeobox protein Meis3; AltName: Full=Meis1-related protein 2;												0						GCCTCTCCCAGTTCTGGTGGA	0.627													16	23					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	17	16722495	16722495	+	RNA	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:16722495G>T	uc002gqq.1	-	5		c.1236C>A								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		GAGGGAAAGGGAATCAAGGAT	0.572													15	28					0.00244969	0.00247648	0.020292	1	0
SREBF1	6720	broad.mit.edu	37	17	17719285	17719285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:17719285G>A	uc002gru.1	-	12	2466	c.2272C>T	c.(2272-2274)CCT>TCT	p.P758S	SREBF1_uc002grp.1_Missense_Mutation_p.P377S|SREBF1_uc002grq.1_Missense_Mutation_p.P277S|SREBF1_uc002grr.1_Missense_Mutation_p.P504S|SREBF1_uc002grs.1_Missense_Mutation_p.P734S|SREBF1_uc002grt.1_Missense_Mutation_p.P788S|MIR33B_hsa-mir-33b|MI0003646_5'Flank	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	758	Cytoplasmic (Potential).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						TGCATGGCAGGAGGCACTGAG	0.647													35	53					0	0	0.019004	0	0
MYO15A	51168	broad.mit.edu	37	17	18077162	18077162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:18077162C>T	uc010vxh.1	+	64	10756	c.10418C>T	c.(10417-10419)TCC>TTC	p.S3473F	MYO15A_uc010vxi.1_Missense_Mutation_p.S737F|MYO15A_uc002gsl.2_Silent_p.L505L|MYO15A_uc010vxm.1_Intron|MYO15A_uc010cpv.2_Intron	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	3473	Tail.|FERM.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					ACGGCCAACTCCAGCTACCCC	0.647													48	54					0	0	0.014410	0	0
MAP2K3	5606	broad.mit.edu	37	17	21205551	21205551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:21205551C>T	uc002gys.2	+	6	761	c.496C>T	c.(496-498)CTT>TTT	p.L166F	MAP2K3_uc002gyt.2_Missense_Mutation_p.L137F|MAP2K3_uc002gyu.2_Missense_Mutation_p.L137F	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	166	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		AGAGGACATCCTTGGGGAGAT	0.582													9	72					0	0	0.006214	0	0
KSR1	8844	broad.mit.edu	37	17	25932559	25932559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:25932559C>T	uc010crg.2	+	15	1814	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Missense_Mutation_p.R236C	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	592					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CCCCATCTCTCGCAAGGCCAG	0.687													7	11					0	0	0.001984	0	0
FOXN1	8456	broad.mit.edu	37	17	26864160	26864160	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:26864160T>G	uc010crm.2	+	9	1851	c.1653T>G	c.(1651-1653)GAT>GAG	p.D551E	FOXN1_uc002hbj.2_Missense_Mutation_p.D551E	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	551					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					AGTTGAAGGATGATAGCTTGG	0.612													43	131					0	0	0.014410	0	0
ERAL1	26284	broad.mit.edu	37	17	27183392	27183392	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:27183392C>T	uc002hcy.1	+	2	404	c.394C>T	c.(394-396)CAG>TAG	p.Q132*	ERAL1_uc002hcx.1_Nonsense_Mutation_p.Q132*|ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_5'Flank|ERAL1_uc002hdb.1_5'Flank	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	132	G.				ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			ACTCTCCAACCAGCTACTGGG	0.537													71	208					0	0	0.014410	0	0
PIPOX	51268	broad.mit.edu	37	17	27380543	27380543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:27380543G>A	uc002hdr.1	+	4	916	c.590G>A	c.(589-591)AGC>AAC	p.S197N		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	197					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CAAGCTAAGAGCTTGGTCATC	0.572													42	130					0	0	0.011902	0	0
GOSR1	9527	broad.mit.edu	37	17	28808215	28808215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:28808215C>T	uc002hfe.2	+	2	112	c.86C>T	c.(85-87)TCC>TTC	p.S29F	GOSR1_uc002hfd.2_Missense_Mutation_p.S29F|GOSR1_uc002hff.2_5'UTR|GOSR1_uc002hfc.1_Missense_Mutation_p.S29F	NM_004871	NP_004862	O95249	GOSR1_HUMAN	golgi SNAP receptor complex member 1 isoform 1	29	Potential.|Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|SNARE complex	SNAP receptor activity				0						AAACTAGTTTCCTTCAGCAAA	0.388													41	118					0	0	0.009718	0	0
LRRC37B	114659	broad.mit.edu	37	17	30380327	30380327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:30380327C>T	uc002hgu.2	+	12	2835	c.2824C>T	c.(2824-2826)CCA>TCA	p.P942S	LRRC37B_uc010wbx.1_Missense_Mutation_p.P860S|LRRC37B_uc010csu.2_Missense_Mutation_p.P891S	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	942	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				CAAAGACAACCCATCAATATC	0.333													19	75					0	0	0.014323	0	0
UNC45B	146862	broad.mit.edu	37	17	33482405	33482405	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:33482405C>T	uc002hja.2	+	7	827	c.730C>T	c.(730-732)CTG>TTG	p.L244L	UNC45B_uc002hjb.2_Silent_p.L244L|UNC45B_uc002hjc.2_Silent_p.L244L|UNC45B_uc010cto.2_Silent_p.L244L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	244	ARM 2.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TGTCTGCAACCTGCTCCAAGC	0.542													63	161					0	0	0.014410	0	0
AMAC1	146861	broad.mit.edu	37	17	33520991	33520991	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:33520991G>A	uc002hjd.2	-	1	422	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	112	DUF6 1.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CAATGCTGAGGATGTTGAGCA	0.597													125	273					0	0	0.014410	0	0
SLFN11	91607	broad.mit.edu	37	17	33679461	33679461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:33679461C>T	uc010ctp.2	-	7	3062	c.2620G>A	c.(2620-2622)GAC>AAC	p.D874N	SLFN11_uc010ctq.2_Missense_Mutation_p.D874N|SLFN11_uc002hjh.3_Missense_Mutation_p.D874N|SLFN11_uc002hjg.3_Missense_Mutation_p.D874N|SLFN11_uc010ctr.2_Missense_Mutation_p.D874N	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	874						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ATAGCTGGGTCAGCTGTCCTT	0.478													86	224					0	0	0.014410	0	0
AP2B1	163	broad.mit.edu	37	17	33966762	33966762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:33966762C>T	uc002hjr.2	+	11	1609	c.1420C>T	c.(1420-1422)CAC>TAC	p.H474Y	AP2B1_uc002hjq.2_Missense_Mutation_p.H474Y|AP2B1_uc010wci.1_Missense_Mutation_p.H436Y|AP2B1_uc002hjs.2_Missense_Mutation_p.H417Y|AP2B1_uc002hjt.2_Missense_Mutation_p.H474Y|AP2B1_uc010ctv.2_Missense_Mutation_p.H474Y|AP2B1_uc010wcj.1_Missense_Mutation_p.H211Y	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	474					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		GGAGGGTTTTCACGATGAAAG	0.418													32	70					0	0	0.023175	0	0
SYNRG	11276	broad.mit.edu	37	17	35900499	35900499	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:35900499G>A	uc002hoa.2	-	16	3432	c.3349C>T	c.(3349-3351)CTG>TTG	p.L1117L	SYNRG_uc010wde.1_Silent_p.L1039L|SYNRG_uc010wdf.1_Silent_p.L1039L|SYNRG_uc002hoc.2_Silent_p.L1038L|SYNRG_uc002hoe.2_Silent_p.L1039L|SYNRG_uc002hod.2_Silent_p.L994L|SYNRG_uc010wdg.1_Silent_p.L911L|SYNRG_uc002hob.2_Silent_p.L1117L	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	1117					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TCTCCCGTCAGGTCTTTGTAC	0.537													52	123					0	0	0.014410	0	0
GPR179	440435	broad.mit.edu	37	17	36482965	36482965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:36482965C>T	uc002hpz.2	-	11	6508	c.6487G>A	c.(6487-6489)GGA>AGA	p.G2163R		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	2163	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TCCGTCCCTCCAGGTCCTGCC	0.592													60	188					0	0	0.014410	0	0
SRCIN1	80725	broad.mit.edu	37	17	36707402	36707402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:36707402C>T	uc002hqd.2	-	15	3176	c.2951G>A	c.(2950-2952)AGG>AAG	p.R984K	SRCIN1_uc002hqf.1_Missense_Mutation_p.R856K|SRCIN1_uc002hqe.2_Missense_Mutation_p.R838K	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	856	Pro-rich.				exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						TGAGCCCCTCCTCCCACTGGG	0.697													12	28					0	0	0.013537	0	0
SRCIN1	80725	broad.mit.edu	37	17	36717946	36717946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:36717946G>A	uc002hqd.2	-	7	1678	c.1453C>T	c.(1453-1455)CCC>TCC	p.P485S	SRCIN1_uc002hqf.1_Missense_Mutation_p.P357S|SRCIN1_uc002hqe.2_Missense_Mutation_p.P339S|SRCIN1_uc002hqg.2_5'Flank|SRCIN1_uc002hqh.1_Missense_Mutation_p.P545S	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	357	Pro-rich.				exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GGACCTCCGGGGGGTGCTGCC	0.642													3	6					0	0	0.004672	0	0
GSDMB	55876	broad.mit.edu	37	17	38063225	38063225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38063225G>A	uc010cwj.2	-	6	721	c.716C>T	c.(715-717)TCA>TTA	p.S239L	GSDMB_uc010cwi.2_Intron|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_Intron|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Intron|GSDMB_uc002hth.2_Missense_Mutation_p.S226L|GSDMB_uc010wem.1_Intron	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasm				breast(1)|pancreas(1)	2						TAAACAGGATGAAGCACCATC	0.512													40	68					0	0	0.011902	0	0
TOP2A	7153	broad.mit.edu	37	17	38563094	38563094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38563094G>A	uc002huq.2	-	14	1853	c.1727C>T	c.(1726-1728)CCC>CTC	p.P576L		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	576					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	CTTTACAATGGGAGTGATAAA	0.418													9	17					0	0	0.004482	0	0
KRT26	353288	broad.mit.edu	37	17	38928343	38928343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38928343C>T	uc002hvf.2	-	1	69	c.23G>A	c.(22-24)GGA>GAA	p.G8E		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	8	Head.|Gly-rich.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CCTCCTGGATCCACCAGAAAG	0.577													44	133					0	0	0.009718	0	0
KRT28	162605	broad.mit.edu	37	17	38955789	38955789	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38955789C>T	uc002hvh.1	-	1	423	c.357G>A	c.(355-357)AAG>AAA	p.K119K		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	119	Rod.|Coil 1A.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CATACCAACCCTTGATTTTTC	0.423													63	208					0	0	0.014410	0	0
KRT10	3858	broad.mit.edu	37	17	38975387	38975387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38975387C>T	uc002hvi.2	-	7	1426	c.1400G>A	c.(1399-1401)GGA>GAA	p.G467E	KRT10_uc010cxd.2_Intron|TMEM99_uc002hvj.1_5'UTR	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	467	Gly-rich.|Tail.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				gccgaaacttccgccgccgcg	0.179													13	25					0	0	0.016723	0	0
KRT10	3858	broad.mit.edu	37	17	38978535	38978535	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:38978535G>A	uc002hvi.2	-	1	329	c.303C>T	c.(301-303)AGC>AGT	p.S101S	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	101	Head.|Gly-rich.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				CCCCTCCAAAGATGCCTCCAT	0.468													45	125					0	0	0.014410	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261704	39261704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39261704G>A	uc010wfp.1	+	1	64	c.64G>A	c.(64-66)GAG>AAG	p.E22K		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	22						keratin filament					0						CCTCTGTCAGGAGACCTGCTG	0.647													21	62					0	0	0.012319	0	0
KRT37	8688	broad.mit.edu	37	17	39580464	39580464	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39580464C>T	uc002hwp.1	-	1	359	c.312G>A	c.(310-312)GAG>GAA	p.E104E	uc002hwo.1_RNA	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	104	Head.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				TGGTCTCCTTCTCATGGCCAT	0.572													36	142					0	0	0.023175	0	0
KRT38	8687	broad.mit.edu	37	17	39597035	39597035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39597035C>T	uc002hwq.1	-	1	562	c.139G>A	c.(139-141)GCC>ACC	p.A47T		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	47	Head.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GCCACGTTGGCCAAAAGGCAC	0.627													37	103					0	0	0.017118	0	0
JUP	3728	broad.mit.edu	37	17	39681451	39681451	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39681451G>A	uc010wfs.1	-	5	992	c.984C>T	c.(982-984)TTC>TTT	p.F328F	KRT19_uc002hxd.3_Silent_p.F165F	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	Error:Variant_position_missing_in_P14923_after_alignment					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		ACTTGGTTCGGAAGTCATCTG	0.567													68	222					0	0	0.014410	0	0
KRT19	3880	broad.mit.edu	37	17	39684284	39684284	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39684284G>A	uc002hxd.3	-	1	358	c.216C>T	c.(214-216)TCC>TCT	p.S72S	JUP_uc010wfs.1_Intron	NM_002276	NP_002267	P08727	K1C19_HUMAN	keratin 19	72	Head.				interspecies interaction between organisms|response to estrogen stimulus|sarcomere organization	costamere|intermediate filament	protein binding|structural constituent of cytoskeleton|structural constituent of muscle				0		Breast(137;0.00038)				GCAGCCCGTCGGACGCGGTCA	0.716													34	106					0	0	0.015359	0	0
KRT16	3868	broad.mit.edu	37	17	39768500	39768500	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39768500C>T	uc002hxg.3	-	1	580	c.441G>A	c.(439-441)GTG>GTA	p.V147V	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	147	Coil 1A.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				CACGGATCTTCACTTCCAGGT	0.577													98	228					0	0	0.014410	0	0
KRT17	3872	broad.mit.edu	37	17	39777872	39777872	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39777872C>T	uc002hxh.2	-	4	928	c.807G>A	c.(805-807)AAG>AAA	p.K269K	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	269	Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				CCTCGGCATCCTTGCGGTTCT	0.597									Steatocystoma_Multiplex				52	160					0	0	0.014410	0	0
JUP	3728	broad.mit.edu	37	17	39928000	39928000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:39928000G>A	uc002hxq.2	-	2	384	c.107C>T	c.(106-108)TCC>TTC	p.S36F	JUP_uc010wfs.1_Missense_Mutation_p.S36F|JUP_uc002hxr.2_Missense_Mutation_p.S36F|JUP_uc002hxs.2_Missense_Mutation_p.S36F	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	36					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GCTGCTGACGGAGGGCACGCA	0.607													36	85					0	0	0.019004	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40647107	40647107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:40647107C>T	uc002hzr.2	+	13	1537	c.1370C>T	c.(1369-1371)TCC>TTC	p.S457F	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.S457F|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.S464F|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.S414F|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.S414F|ATP6V0A1_uc010cyg.2_Missense_Mutation_p.S103F|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.S316F	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	457	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		GGTGTGTTCTCCATGTACACT	0.413													95	263					0	0	0.014410	0	0
TUBG1	7283	broad.mit.edu	37	17	40766394	40766394	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:40766394C>T	uc002ian.2	+	9	1358	c.960C>T	c.(958-960)ATC>ATT	p.I320I		NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	320					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		ACATCGCCATCCTCAACATCA	0.627													28	57					0	0	0.008361	0	0
CCDC56	28958	broad.mit.edu	37	17	40947899	40947899	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:40947899A>G	uc010wgz.1	-	3	636	c.359T>C	c.(358-360)GTT>GCT	p.V120A	WNK4_uc002ibj.2_Silent_p.E1093E|WNK4_uc010wgx.1_Silent_p.E757E|CNTD1_uc002ibm.3_5'Flank			Q9Y2R0	CCD56_HUMAN	SubName: Full=cDNA FLJ50764;	Error:Variant_position_missing_in_Q9Y2R0_after_alignment						integral to membrane					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0741)		ATGGGAAGGAACCCCAAGTTG	0.617													28	71					0	0	0.008361	0	0
RPL27	6155	broad.mit.edu	37	17	41152077	41152077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:41152077C>T	uc002icj.2	+	3	254	c.209C>T	c.(208-210)TCT>TTT	p.S70F	RPL27_uc002ick.2_Missense_Mutation_p.S70F	NM_000988	NP_000979	P61353	RL27_HUMAN	ribosomal protein L27	70					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	structural constituent of ribosome				0		Breast(137;0.000717)|Ovarian(249;0.0776)		BRCA - Breast invasive adenocarcinoma(366;0.157)		AAGATAAAATCTTTTGTGAAA	0.438													35	79					0	0	0.017118	0	0
SLC4A1	6521	broad.mit.edu	37	17	42340052	42340052	+	Missense_Mutation	SNP	C	T	T	rs56366151		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:42340052C>T	uc002igf.3	-	3	207	c.58G>A	c.(58-60)GAA>AAA	p.E20K	SLC4A1_uc002igg.3_Missense_Mutation_p.E20K	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	20	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TCTTCATATTCCTCCTGCTCC	0.597													16	52					0	0	0.028581	0	0
SLC4A1	6521	broad.mit.edu	37	17	42340064	42340064	+	Silent	SNP	G	A	A	rs55786369		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:42340064G>A	uc002igf.3	-	3	195	c.46C>T	c.(46-48)CTG>TTG	p.L16L	SLC4A1_uc002igg.3_Silent_p.L16L	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	16	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TCCTGCTCCAGATTCTCCTCC	0.587													18	55					0	0	0.006122	0	0
ADAM11	4185	broad.mit.edu	37	17	42849670	42849670	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:42849670C>T	uc002ihh.2	+	7	579	c.579C>T	c.(577-579)CTC>CTT	p.L193L	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	193					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GGACCCCTCTCCTCCCAGATC	0.672													7	26					0	0	0.008291	0	0
CCDC103	388389	broad.mit.edu	37	17	42979994	42979994	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:42979994C>T	uc002iho.2	+	4	621	c.538C>T	c.(538-540)CTA>TTA	p.L180L	CCDC103_uc002ihp.1_5'Flank	NM_213607	NP_998772	Q8IW40	CC103_HUMAN	coiled-coil domain containing 103	180										kidney(1)	1		Prostate(33;0.109)				CACCCTGAACCTAAGCCTGCT	0.647													34	98					0	0	0.015359	0	0
Unknown	0	broad.mit.edu	37	17	45127195	45127195	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:45127195G>A	uc010wkj.1	+	2	747	c.393G>A	c.(391-393)CAG>CAA	p.Q131Q	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		CCCTACCACAGGTGAGAGACA	0.473													41	87					0	0	0.007835	0	0
SAMD14	201191	broad.mit.edu	37	17	48191655	48191655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48191655C>T	uc002iqg.2	-	8	1137	c.838G>A	c.(838-840)GAT>AAT	p.D280N	SAMD14_uc002iqd.2_Missense_Mutation_p.D63N|SAMD14_uc002iqe.2_Missense_Mutation_p.D63N|SAMD14_uc002iqf.2_Missense_Mutation_p.D308N	NM_174920	NP_777580	Q8IZD0	SAM14_HUMAN	sterile alpha motif domain containing 14	280											0						GTGGAGTCATCACTCAGAGTG	0.577													28	65					0	0	0.008361	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48603517	48603517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48603517G>A	uc010wmr.1	+	14	2349	c.2187G>A	c.(2185-2187)ATG>ATA	p.M729I	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	692					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGAGCATCATGGAGGAGATCC	0.627													57	154					0	0	0.014410	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48605597	48605597	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48605597G>A	uc010wmr.1	+	16	2664	c.2502G>A	c.(2500-2502)AAG>AAA	p.K834K	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	797					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			TGCCTGAGAAGGAGACCATCT	0.532													9	44					0	0	0.006214	0	0
CACNA1G	8913	broad.mit.edu	37	17	48696027	48696027	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48696027G>A	uc002irk.1	+	33	5811	c.5439G>A	c.(5437-5439)CGG>CGA	p.R1813R	CACNA1G_uc002irj.1_Silent_p.R1779R|CACNA1G_uc002irl.1_Silent_p.R1790R|CACNA1G_uc002irm.1_Silent_p.R1779R|CACNA1G_uc002irn.1_Silent_p.R1772R|CACNA1G_uc002iro.1_Silent_p.R1779R|CACNA1G_uc002irp.1_Silent_p.R1813R|CACNA1G_uc002irq.1_Silent_p.R1790R|CACNA1G_uc002irr.1_Silent_p.R1813R|CACNA1G_uc002irs.1_Silent_p.R1802R|CACNA1G_uc002irt.1_Silent_p.R1795R|CACNA1G_uc002irv.1_Silent_p.R1802R|CACNA1G_uc002irw.1_Silent_p.R1790R|CACNA1G_uc002iru.1_Silent_p.R1779R|CACNA1G_uc002irx.1_Silent_p.R1726R|CACNA1G_uc002iry.1_Silent_p.R1715R|CACNA1G_uc002irz.1_Silent_p.R1719R|CACNA1G_uc002isa.1_Silent_p.R1692R|CACNA1G_uc002isb.1_Silent_p.R1733R|CACNA1G_uc002isc.1_Silent_p.R1715R|CACNA1G_uc002isd.1_Silent_p.R1701R|CACNA1G_uc002ise.1_Silent_p.R1681R|CACNA1G_uc002isf.1_Silent_p.R1708R|CACNA1G_uc002isg.1_Silent_p.R1674R|CACNA1G_uc002ish.1_Silent_p.R1681R|CACNA1G_uc002isi.1_Silent_p.R1669R	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1813	IV.|Extracellular (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACACCCTCCGGGACTGTGACC	0.562													25	52					0	0	0.016522	0	0
CACNA1G	8913	broad.mit.edu	37	17	48696263	48696263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48696263G>A	uc002irk.1	+	33	6047	c.5675G>A	c.(5674-5676)TGG>TAG	p.W1892*	CACNA1G_uc002irj.1_Nonsense_Mutation_p.W1858*|CACNA1G_uc002irl.1_Nonsense_Mutation_p.W1869*|CACNA1G_uc002irm.1_Nonsense_Mutation_p.W1858*|CACNA1G_uc002irn.1_Nonsense_Mutation_p.W1851*|CACNA1G_uc002iro.1_Nonsense_Mutation_p.W1858*|CACNA1G_uc002irp.1_Nonsense_Mutation_p.W1892*|CACNA1G_uc002irq.1_Nonsense_Mutation_p.W1869*|CACNA1G_uc002irr.1_Nonsense_Mutation_p.W1892*|CACNA1G_uc002irs.1_Nonsense_Mutation_p.W1881*|CACNA1G_uc002irt.1_Nonsense_Mutation_p.W1874*|CACNA1G_uc002irv.1_Nonsense_Mutation_p.W1881*|CACNA1G_uc002irw.1_Nonsense_Mutation_p.W1869*|CACNA1G_uc002iru.1_Nonsense_Mutation_p.W1858*|CACNA1G_uc002irx.1_Nonsense_Mutation_p.W1805*|CACNA1G_uc002iry.1_Nonsense_Mutation_p.W1794*|CACNA1G_uc002irz.1_Nonsense_Mutation_p.W1798*|CACNA1G_uc002isa.1_Nonsense_Mutation_p.W1771*|CACNA1G_uc002isb.1_Nonsense_Mutation_p.W1812*|CACNA1G_uc002isc.1_Nonsense_Mutation_p.W1794*|CACNA1G_uc002isd.1_Nonsense_Mutation_p.W1780*|CACNA1G_uc002ise.1_Nonsense_Mutation_p.W1760*|CACNA1G_uc002isf.1_Nonsense_Mutation_p.W1787*|CACNA1G_uc002isg.1_Nonsense_Mutation_p.W1753*|CACNA1G_uc002ish.1_Nonsense_Mutation_p.W1760*|CACNA1G_uc002isi.1_Nonsense_Mutation_p.W1748*	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1892	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCCTTCCTCTGGCCTGGGGTC	0.692													19	34					0	0	0.007413	0	0
CACNA1G	8913	broad.mit.edu	37	17	48697069	48697069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:48697069C>T	uc002irk.1	+	34	6179	c.5807C>T	c.(5806-5808)TCC>TTC	p.S1936F	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Intron|CACNA1G_uc002irm.1_Missense_Mutation_p.S1902F|CACNA1G_uc002irn.1_Intron|CACNA1G_uc002iro.1_Intron|CACNA1G_uc002irp.1_Missense_Mutation_p.S1936F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1913F|CACNA1G_uc002irr.1_Intron|CACNA1G_uc002irs.1_Missense_Mutation_p.S1925F|CACNA1G_uc002irt.1_Intron|CACNA1G_uc002irv.1_Intron|CACNA1G_uc002irw.1_Intron|CACNA1G_uc002iru.1_Missense_Mutation_p.S1902F|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Intron|CACNA1G_uc002isb.1_Intron|CACNA1G_uc002isc.1_Missense_Mutation_p.S1838F|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Missense_Mutation_p.S1804F|CACNA1G_uc002isf.1_Missense_Mutation_p.S1831F|CACNA1G_uc002isg.1_Intron|CACNA1G_uc002ish.1_Intron|CACNA1G_uc002isi.1_Intron	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1936	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GACACCATATCCCTGCTGATC	0.662													14	28					0	0	0.024245	0	0
KIF2B	84643	broad.mit.edu	37	17	51902109	51902109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:51902109C>T	uc002iua.2	+	1	1871	c.1715C>T	c.(1714-1716)TCA>TTA	p.S572L	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	572					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ATCGGAAATTCAGAAATGTCC	0.388													55	125					0	0	0.014410	0	0
OR4D2	124538	broad.mit.edu	37	17	56247769	56247769	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:56247769C>T	uc010wnp.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATGATCTTCGTTCCAAGCA	0.537													60	181					0	0	0.014410	0	0
MPO	4353	broad.mit.edu	37	17	56350865	56350865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:56350865G>A	uc002ivu.1	-	9	1708	c.1531C>T	c.(1531-1533)CGC>TGC	p.R511C		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	511					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TTGTCCAGGCGGAACATGAAG	0.587													90	240					0	0	0.014410	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386570	56386570	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:56386570G>A	uc002ivx.3	-	22	4934	c.4063C>T	c.(4063-4065)CGA>TGA	p.R1355*	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Nonsense_Mutation_p.R1295*|BZRAP1_uc010wnt.1_Nonsense_Mutation_p.R1355*	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1355						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCAGGGTCTCGGGAAGAACAG	0.483													41	107					0	0	0.027894	0	0
PPM1E	22843	broad.mit.edu	37	17	57033120	57033120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:57033120G>A	uc002iwx.2	+	2	702	c.575G>A	c.(574-576)GGG>GAG	p.G192E	PPM1E_uc010ddd.2_Missense_Mutation_p.G22R	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	201					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			GGCACAGAAGGGACTGTGGGT	0.383													33	77					0	0	0.013726	0	0
TRIM37	4591	broad.mit.edu	37	17	57089803	57089803	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:57089803T>C	uc002iwy.3	-	22	3025	c.2581A>G	c.(2581-2583)AAT>GAT	p.N861D	TRIM37_uc002iwz.3_Missense_Mutation_p.N861D|TRIM37_uc002ixa.3_Missense_Mutation_p.N739D|TRIM37_uc010woc.1_Missense_Mutation_p.N827D	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	861						perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					CCTTTAGCATTAGCCCTCAAA	0.383									Mulibrey_Nanism				13	49					0	0	0.024245	0	0
TRIM37	4591	broad.mit.edu	37	17	57134297	57134298	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:57134297_57134298GG>AA	uc002iwy.3	-	13	1581_1582	c.1137_1138CC>TT	c.(1135-1140)TTCCGT>TTTTGT	p.R380C	TRIM37_uc002iwz.3_Missense_Mutation_p.R380C|TRIM37_uc002ixa.3_Missense_Mutation_p.R258C|TRIM37_uc010woc.1_Missense_Mutation_p.R346C	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	380	MATH.					perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					AAGTCCAAACGGAAAAATCTAT	0.356									Mulibrey_Nanism				23	117					0	0	0.004672	0	0
DHX40	79665	broad.mit.edu	37	17	57684448	57684448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:57684448C>T	uc002ixn.1	+	18	2402	c.2255C>T	c.(2254-2256)TCC>TTC	p.S752F	DHX40_uc010woe.1_Missense_Mutation_p.S675F|DHX40_uc010wof.1_Missense_Mutation_p.S267F	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	752							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GATGACAAATCCATATCTGAT	0.413													43	125					0	0	0.013114	0	0
TBX4	9496	broad.mit.edu	37	17	59560748	59560748	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:59560748G>A	uc002izi.2	+	8	1554	c.1509G>A	c.(1507-1509)AGG>AGA	p.R503R	TBX4_uc010ddo.2_Silent_p.R504R|TBX4_uc010woy.1_Silent_p.R504R	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	503					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GGTGTGAGAGGAAGCCACCCT	0.547													29	67					0	0	0.008361	0	0
TLK2	11011	broad.mit.edu	37	17	60678057	60678057	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:60678057C>T	uc010ddp.2	+	19	1930	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	TLK2_uc002izx.3_Silent_p.F380F|TLK2_uc002izz.3_Silent_p.F532F|TLK2_uc002jaa.3_Silent_p.F500F|TLK2_uc010wpd.1_Silent_p.F500F	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	554	Protein kinase.				cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						ATCTGGACTTCTACCTGAAAC	0.358													22	42					0	0	0.014323	0	0
MRC2	9902	broad.mit.edu	37	17	60742190	60742190	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:60742190C>T	uc002jad.2	+	2	802	c.400C>T	c.(400-402)CTG>TTG	p.L134L	MRC2_uc002jac.2_Silent_p.L134L	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	134	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTCCTTGCTCCTGGGGGCCCG	0.622													38	100					0	0	0.021022	0	0
MARCH10	162333	broad.mit.edu	37	17	60813617	60813617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:60813617C>T	uc010ddr.2	-	6	1850	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	MARCH10_uc002jag.3_Missense_Mutation_p.E538K|MARCH10_uc010dds.2_Missense_Mutation_p.E576K|MARCH10_uc002jah.2_Missense_Mutation_p.E537K|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	538							ligase activity|zinc ion binding				0						ACAGCAAATTCGTGTGCACTG	0.443													56	133					0	0	0.014410	0	0
MARCH10	162333	broad.mit.edu	37	17	60814370	60814370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:60814370C>T	uc010ddr.2	-	6	1097	c.859G>A	c.(859-861)GAA>AAA	p.E287K	MARCH10_uc002jag.3_Missense_Mutation_p.E287K|MARCH10_uc010dds.2_Missense_Mutation_p.E325K|MARCH10_uc002jah.2_Missense_Mutation_p.E286K|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	287							ligase activity|zinc ion binding				0						TCATCGCTTTCTCTTCTGCTG	0.473													137	299					0	0	0.014410	0	0
TANC2	26115	broad.mit.edu	37	17	61498783	61498783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:61498783C>T	uc002jal.3	+	25	5463	c.5440C>T	c.(5440-5442)CCT>TCT	p.P1814S	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.P925S	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1814							binding			ovary(2)	2						CCCACTGAAACCTGCATATGA	0.537													27	46					0	0	0.021523	0	0
SMARCD2	6603	broad.mit.edu	37	17	61910669	61910669	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:61910669G>C	uc010deb.1	-	11	1746	c.1429C>G	c.(1429-1431)CGA>GGA	p.R477G	SMARCD2_uc010wpt.1_Missense_Mutation_p.R429G|SMARCD2_uc010dea.1_Missense_Mutation_p.R402G|SMARCD2_uc010dec.1_Missense_Mutation_p.R456G	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	477					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						TTGAGGTCTCGGCGCTGGGAA	0.542													23	75					0	0	0.016522	0	0
SCN4A	6329	broad.mit.edu	37	17	62025267	62025267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:62025267C>T	uc002jds.1	-	17	3378	c.3301G>A	c.(3301-3303)GAC>AAC	p.D1101N		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1101	III.|Helical; Name=S3 of repeat III; (Potential).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	ATGAGGAAGTCGAGCCAGCAC	0.587													17	63					0	0	0.007413	0	0
SCN4A	6329	broad.mit.edu	37	17	62041908	62041908	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:62041908G>A	uc002jds.1	-	9	1449	c.1372C>T	c.(1372-1374)CTG>TTG	p.L458L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	458					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCCTCGGCCAGGGTGGCCTCA	0.527													25	65					0	0	0.021523	0	0
APOH	350	broad.mit.edu	37	17	64210703	64210703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:64210703C>T	uc002jfn.3	-	7	909	c.850G>A	c.(850-852)GAA>AAA	p.E284K		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	284	Sushi-like.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			TTAAATTTTTCCTGAATCTTT	0.358													54	139					0	0	0.014410	0	0
BPTF	2186	broad.mit.edu	37	17	65936603	65936603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:65936603C>T	uc002jgf.2	+	19	6369	c.6308C>T	c.(6307-6309)TCC>TTC	p.S2103F	BPTF_uc002jge.2_Missense_Mutation_p.S2229F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2229					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CAGCCTGTCTCCACTGCAGTC	0.468													15	39					0	0	0.006122	0	0
KPNA2	3838	broad.mit.edu	37	17	66036862	66036862	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:66036862C>T	uc002jgk.2	+	4	414	c.282C>T	c.(280-282)CTC>CTT	p.L94L	KPNA2_uc002jgl.2_Silent_p.L94L	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	94	ARM 1; truncated.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			AAAATCAGCTCCAAGCTACTC	0.418													87	217					0	0	0.014410	0	0
ABCA8	10351	broad.mit.edu	37	17	66883513	66883513	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:66883513G>A	uc002jhp.2	-	23	3338	c.3159C>T	c.(3157-3159)TTC>TTT	p.F1053F	ABCA8_uc002jhq.2_Silent_p.F1093F|ABCA8_uc010wqq.1_Silent_p.F1093F|ABCA8_uc010wqr.1_Silent_p.F1032F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1053						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCATGTCTTCGAAGTTTGAAA	0.343													27	74					0	0	0.021523	0	0
ABCA6	23460	broad.mit.edu	37	17	67101643	67101643	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:67101643G>A	uc002jhw.1	-	20	2875	c.2700C>T	c.(2698-2700)CCC>CCT	p.P900P	ABCA6_uc002jhx.1_3'UTR	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	900					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GGGGTTCCTGGGGAAGTTGTC	0.318													7	24					0	0	0.006214	0	0
ABCA10	10349	broad.mit.edu	37	17	67212388	67212388	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:67212388G>A	uc010dfa.1	-	8	1521	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'Flank|ABCA10_uc010dfc.1_Silent_p.F106F	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	214	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TATAGAGTGTGAATATCACCA	0.343													140	362					0	0	0.014410	0	0
MAP2K6	5608	broad.mit.edu	37	17	67501925	67501925	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:67501925G>A	uc002jij.2	+	2	309	c.21G>A	c.(19-21)AAG>AAA	p.K7K	MAP2K6_uc002jii.2_Silent_p.K7K|MAP2K6_uc002jik.2_Silent_p.K37K	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	7					activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					CCATAGGCAAGAAGCGAAACC	0.433													41	114					0	0	0.010771	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281793	71281793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:71281793C>T	uc002jjn.2	-	2	994	c.847G>A	c.(847-849)GAT>AAT	p.D283N	CDC42EP4_uc002jjo.2_Missense_Mutation_p.D283N|CDC42EP4_uc002jjp.1_Missense_Mutation_p.D213N	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	283					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			CACCCCTCATCCTCCAGAGCA	0.721													18	37					0	0	0.004990	0	0
CD300C	10871	broad.mit.edu	37	17	72537790	72537790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:72537790C>T	uc002jky.1	-	4	974	c.613G>A	c.(613-615)GTG>ATG	p.V205M		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	205	Cytoplasmic (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						GGTCTGTTCACCCAGAGGACG	0.592													36	82					0	0	0.015359	0	0
CD300C	10871	broad.mit.edu	37	17	72539092	72539092	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:72539092G>A	uc002jky.1	-	3	796	c.435C>T	c.(433-435)TCC>TCT	p.S145S		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	145	Pro-rich.|Extracellular (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						AGGTGCCCATGGAGCTCTGGG	0.622													47	120					0	0	0.014410	0	0
OTOP2	92736	broad.mit.edu	37	17	72926630	72926630	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:72926630C>T	uc010wrp.1	+	7	989	c.900C>T	c.(898-900)TTC>TTT	p.F300F		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	300	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCTGCTCTTCGTGGTGGGGC	0.617													53	115					0	0	0.014410	0	0
OTOP3	347741	broad.mit.edu	37	17	72945471	72945471	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:72945471A>C	uc010wrr.1	+	7	1751	c.1751A>C	c.(1750-1752)CAC>CCC	p.H584P	OTOP3_uc010wrq.1_Missense_Mutation_p.H566P	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	584						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					TACCGCATGCACTCTGTGGGA	0.602													29	109					0	0	0.012213	0	0
MRPL38	64978	broad.mit.edu	37	17	73898128	73898128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:73898128C>T	uc010wso.1	-	3	580	c.355G>A	c.(355-357)GAG>AAG	p.E119K	FBF1_uc002jqa.1_RNA|MRPL38_uc002jpz.1_RNA	NM_032478	NP_115867	Q96DV4	RM38_HUMAN	mitochondrial ribosomal protein L38 precursor	119	Potential.					actin cytoskeleton|mitochondrion|ribosome				pancreas(1)	1			all cancers(21;0.000154)|Epithelial(20;0.000156)|BRCA - Breast invasive adenocarcinoma(9;0.00936)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCGCTCCTCTTCCACATTG	0.627													26	42					0	0	0.008361	0	0
EVPL	2125	broad.mit.edu	37	17	74005252	74005252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:74005252C>T	uc002jqi.2	-	22	4262	c.4034G>A	c.(4033-4035)CGG>CAG	p.R1345Q	EVPL_uc010wss.1_Missense_Mutation_p.R1367Q|EVPL_uc010wst.1_Missense_Mutation_p.R815Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1345	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCCGCGGCCCGCCTCTTCTG	0.682													74	165					0	0	0.014410	0	0
AANAT	15	broad.mit.edu	37	17	74464834	74464834	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:74464834C>T	uc002jro.2	+	2	240	c.6C>T	c.(4-6)TCC>TCT	p.S2S	AANAT_uc010wte.1_RNA	NM_001088	NP_001079	Q16613	SNAT_HUMAN	arylalkylamine N-acetyltransferase	2					circadian rhythm|melatonin biosynthetic process	cytosol	aralkylamine N-acetyltransferase activity				0						CCAGAATGTCCACGCAGAGCA	0.657													7	28					0	0	0.004482	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74622736	74622736	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:74622736C>T	uc002jsh.2	-	5	1482	c.1308G>A	c.(1306-1308)GGG>GGA	p.G436G	ST6GALNAC1_uc002jsi.2_Silent_p.G304G|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	436	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGCTCACCTTCCCAAGAGGCA	0.562													226	650					0	0	0.014410	0	0
TNRC6C	57690	broad.mit.edu	37	17	76067190	76067190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:76067190G>A	uc002jud.2	+	7	3403	c.2803G>A	c.(2803-2805)GAT>AAT	p.D935N	TNRC6C_uc002juf.2_Missense_Mutation_p.D932N|TNRC6C_uc002jue.2_Missense_Mutation_p.D932N	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	935	Sufficient for interaction with argonaute family proteins.|UBA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			TGGCAAGCAGGATGAGGCCTG	0.507													7	16					0	0	0.001984	0	0
DNAH17	8632	broad.mit.edu	37	17	76503579	76503579	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:76503579C>T	uc010wtu.1	-	2	597	c.420G>A	c.(418-420)GGG>GGA	p.G140G						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GCTGGGAGTCCCCCGGGAGCT	0.582													17	66					0	0	0.004990	0	0
RPTOR	57521	broad.mit.edu	37	17	78897296	78897296	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:78897296C>T	uc002jyt.1	+	23	3436	c.2631C>T	c.(2629-2631)TCC>TCT	p.S877S	RPTOR_uc010wug.1_Silent_p.S719S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	877					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GCAGGGGCTCCCCTCCGGCGT	0.632													12	78					0	0	0.010729	0	0
BAHCC1	57597	broad.mit.edu	37	17	79426544	79426544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:79426544C>T	uc002kaf.2	+	21	5819	c.5819C>T	c.(5818-5820)TCC>TTC	p.S1940F	BAHCC1_uc002kae.2_Missense_Mutation_p.S1170F	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	1940							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CGGCCACAGTCCAGCCGGTAC	0.677													41	93					0	0	0.014410	0	0
PYCR1	5831	broad.mit.edu	37	17	79891108	79891108	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:79891108G>A	uc002kcr.1	-	7	1220	c.942C>T	c.(940-942)GCC>GCT	p.A314A	PYCR1_uc002kcq.1_3'UTR|PYCR1_uc002kcp.2_Intron|PYCR1_uc002kcs.1_3'UTR|PYCR1_uc010wvd.1_Silent_p.A341A|PYCR1_uc002kct.1_Silent_p.A314A|PYCR1_uc002kcu.1_Silent_p.A283A	NM_006907	NP_008838	P32322	P5CR1_HUMAN	pyrroline-5-carboxylate reductase 1 isoform 1	314					cellular response to oxidative stress|proline biosynthetic process	mitochondrial matrix	binding|pyrroline-5-carboxylate reductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)		L-Proline(DB00172)|NADH(DB00157)	TGCCCGCTGGGGCCAGGCTGC	0.622													38	89					0	0	0.013114	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79954519	79954519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:79954519C>T	uc002kcx.2	+	7	827	c.730C>T	c.(730-732)CCT>TCT	p.P244S	ASPSCR1_uc002kcw.1_Missense_Mutation_p.P244S|ASPSCR1_uc002kcy.2_Missense_Mutation_p.P244S|ASPSCR1_uc002kcz.2_Intron|ASPSCR1_uc002kda.2_Missense_Mutation_p.P167S|ASPSCR1_uc002kdb.1_Missense_Mutation_p.P167S	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	244							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCCCTTTGTTCCTTTCTCGGG	0.652			T	TFE3	alveolar soft part sarcoma								30	68					0	0	0.008361	0	0
FASN	2194	broad.mit.edu	37	17	80043121	80043121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:80043121G>A	uc002kdu.2	-	24	4397	c.4280C>T	c.(4279-4281)TCT>TTT	p.S1427F	FASN_uc002kdw.1_Missense_Mutation_p.S643F	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1427					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GACCTTCAGAGACTCCACCCA	0.682													19	45					0	0	0.007413	0	0
TEX19	400629	broad.mit.edu	37	17	80320137	80320137	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:80320137C>T	uc002keq.2	+	2	420	c.111C>T	c.(109-111)TGC>TGT	p.C37C		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	37						nucleus					0						GCTTCACCTGCTTCAAGGCTG	0.517													85	212					0	0	0.014410	0	0
C17orf101	79701	broad.mit.edu	37	17	80350308	80350308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:80350308G>A	uc002keu.1	-	9	1027	c.926C>T	c.(925-927)CCC>CTC	p.P309L	C17orf101_uc002ket.1_3'UTR|C17orf101_uc010dip.1_RNA	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	309	Fe2OG dioxygenase.|Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						GCCATGGTCGGGGTTGCAGCT	0.662													10	35					0	0	0.013537	0	0
C17orf101	79701	broad.mit.edu	37	17	80373338	80373338	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:80373338G>A	uc002keu.1	-	2	341	c.240C>T	c.(238-240)GTC>GTT	p.V80V	C17orf101_uc002ket.1_Silent_p.V80V|C17orf101_uc010dip.1_RNA|HEXDC_uc002kev.3_5'Flank|HEXDC_uc010diq.2_5'Flank	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	80	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						TCCCTGCCACGACCTCGCCAC	0.622													44	160					0	0	0.014410	0	0
ZNF750	79755	broad.mit.edu	37	17	80788495	80788495	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr17:80788495C>T	uc002kga.2	-	3	2006	c.1695G>A	c.(1693-1695)AGG>AGA	p.R565R	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	565						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GGAAGGCAGGCCTCGGAGCCT	0.622													64	146					0	0	0.014410	0	0
CLUL1	27098	broad.mit.edu	37	18	633399	633399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:633399G>A	uc002kkp.2	+	6	1103	c.958G>A	c.(958-960)GAA>AAA	p.E320K	CLUL1_uc010wys.1_Missense_Mutation_p.E372K|CLUL1_uc002kkq.2_Missense_Mutation_p.E320K	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	320					cell death	extracellular region				ovary(2)	2						CAAATTTCATGAAAAATGCCA	0.368													13	22					0	0	0.013537	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891684	2891684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:2891684G>A	uc002kln.2	+	4	1718	c.1559G>A	c.(1558-1560)GGG>GAG	p.G520E		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	520					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		AGTCCCCCAGGGGCAGCAGCC	0.507													48	61					0	0	0.014410	0	0
ANKRD12	23253	broad.mit.edu	37	18	9211730	9211730	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:9211730A>G	uc002knv.2	+	6	857	c.600A>G	c.(598-600)CAA>CAG	p.Q200Q	ANKRD12_uc010wzn.1_Silent_p.Q200Q|ANKRD12_uc002knw.2_Silent_p.Q177Q|ANKRD12_uc002knx.2_Silent_p.Q177Q	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	200	ANK 1.					nucleus				ovary(2)|central_nervous_system(1)	3						ATGTGAAACAAGTTAAAGAAT	0.343													19	33					0	0	0.014323	0	0
POTEC	388468	broad.mit.edu	37	18	14534953	14534953	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:14534953C>T	uc010dln.2	-	4	1318	c.864G>A	c.(862-864)GTG>GTA	p.V288V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	288	ANK 5.									skin(3)	3						TTAAAAATTTCACCACTTGCT	0.299													8	51					0	0	0.014323	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14752679	14752679	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:14752679G>A	uc010dlo.2	+	2	516	c.336G>A	c.(334-336)AAG>AAA	p.K112K	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	112	ANK 2.									ovary(1)|skin(1)	2						CTCTGATGAAGGTAAATAGTA	0.403													5	15					0	0	0.014758	0	0
ROCK1	6093	broad.mit.edu	37	18	18550323	18550323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:18550323G>A	uc002kte.2	-	23	3747	c.2806C>T	c.(2806-2808)CAC>TAC	p.H936Y		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	936	Glu-rich.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CTAACAGTGTGATCTTTATCT	0.368													33	36					0	0	0.021022	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995558	19995558	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:19995558G>A	uc002ktv.1	-	1	2321	c.2217C>T	c.(2215-2217)TTC>TTT	p.F739F		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	739	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGGCTGGGGGGAAAAATGCAG	0.498													25	27					0	0	0.018920	0	0
IMPACT	55364	broad.mit.edu	37	18	22023054	22023054	+	Missense_Mutation	SNP	C	T	T	rs141355151		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:22023054C>T	uc002kvh.3	+	7	644	c.532C>T	c.(532-534)CCT>TCT	p.P178S	IMPACT_uc002kvg.3_Missense_Mutation_p.P160S	NM_018439	NP_060909	Q9P2X3	IMPCT_HUMAN	Impact homolog	178											0	all_cancers(21;0.00018)|all_epithelial(16;1.5e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)					TCATGGCATTCCTATTACAGA	0.348													66	91					0	0	0.014410	0	0
CDH2	1000	broad.mit.edu	37	18	25570243	25570243	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:25570243C>T	uc002kwg.2	-	10	1875	c.1416G>A	c.(1414-1416)AAG>AAA	p.K472K	CDH2_uc010xbn.1_Silent_p.K441K	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	472	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						GCTGAATTCCCTTGGCTAATG	0.418													23	41					0	0	0.021523	0	0
DSG4	147409	broad.mit.edu	37	18	28968889	28968889	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:28968889A>G	uc002kwq.2	+	5	560	c.425A>G	c.(424-426)GAG>GGG	p.E142G	DSG4_uc002kwr.2_Missense_Mutation_p.E142G	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	142	Cadherin 1.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGCCTCTTGAGCTTAGAGTC	0.398													31	35					0	0	0.008361	0	0
DSG4	147409	broad.mit.edu	37	18	28993089	28993089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:28993089C>T	uc002kwq.2	+	16	2789	c.2654C>T	c.(2653-2655)CCC>CTC	p.P885L	DSG4_uc002kwr.2_Missense_Mutation_p.P904L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	885	Cytoplasmic (Potential).|Desmoglein repeat 1.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGATTGACTCCCTCAGAAGTT	0.433													93	129					0	0	0.014410	0	0
KLHL14	57565	broad.mit.edu	37	18	30260388	30260388	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:30260388C>T	uc002kxm.1	-	6	1801	c.1413G>A	c.(1411-1413)GGG>GGA	p.G471G	KLHL14_uc010dmd.1_Missense_Mutation_p.G19E	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	471	Kelch 3.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TGTATATTTTCCCATTGTGCA	0.458													32	53					0	0	0.012213	0	0
C18orf34	374864	broad.mit.edu	37	18	30672787	30672787	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:30672787T>C	uc002kxn.2	-	20	2468	c.2326A>G	c.(2326-2328)AAT>GAT	p.N776D	C18orf34_uc010xbq.1_Intron|C18orf34_uc010dme.1_Intron|C18orf34_uc010xbr.1_Missense_Mutation_p.N776D|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.N738D|C18orf34_uc002kxp.2_Missense_Mutation_p.N776D	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	776										ovary(1)	1						TTGAAATAATTGTCCTTTTCT	0.279													19	30					0	0	0.008871	0	0
ASXL3	80816	broad.mit.edu	37	18	31319566	31319566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:31319566C>T	uc010dmg.1	+	11	2253	c.2198C>T	c.(2197-2199)TCC>TTC	p.S733F	ASXL3_uc002kxq.2_Missense_Mutation_p.S440F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	733	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TCAGTGTCTTCCATGCTTCTC	0.403													143	175					0	0	0.014410	0	0
ASXL3	80816	broad.mit.edu	37	18	31323950	31323950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:31323950G>A	uc010dmg.1	+	12	4193	c.4138G>A	c.(4138-4140)GAA>AAA	p.E1380K	ASXL3_uc002kxq.2_Missense_Mutation_p.E1087K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1380					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACCTGGGAGTGAAGAACAGGC	0.507											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	71	92					0	0	0.014410	0	0
NOL4	8715	broad.mit.edu	37	18	31523038	31523038	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:31523038C>T	uc010dmi.2	-	9	1762	c.1533G>A	c.(1531-1533)GAG>GAA	p.E511E	NOL4_uc010xbs.1_Silent_p.E226E|NOL4_uc002kxr.3_Silent_p.E283E|NOL4_uc010xbt.1_Silent_p.E437E|NOL4_uc010dmh.2_Silent_p.E373E|NOL4_uc010xbu.1_Silent_p.E447E|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Silent_p.E196E	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	511						nucleolus	RNA binding			ovary(3)	3						CCTGCTGTCTCTCCAGACGCA	0.438													15	19					0	0	0.006122	0	0
FHOD3	80206	broad.mit.edu	37	18	34182646	34182646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:34182646C>T	uc002kzt.1	+	8	825	c.728C>T	c.(727-729)CCT>CTT	p.P243L	FHOD3_uc002kzr.1_Missense_Mutation_p.P243L|FHOD3_uc002kzs.1_Missense_Mutation_p.P243L|FHOD3_uc002kzu.1_Missense_Mutation_p.P68L|FHOD3_uc010dmz.1_5'UTR	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	243	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GGGGTCAAACCTTGGTCAAAT	0.368													54	39					0	0	0.014410	0	0
SETBP1	26040	broad.mit.edu	37	18	42531182	42531182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:42531182G>A	uc010dni.2	+	4	2173	c.1877G>A	c.(1876-1878)CGA>CAA	p.R626Q		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	626						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGAAAGCGACGACGCAATTTA	0.522									Schinzel-Giedion_syndrome				21	29					0	0	0.014323	0	0
SETBP1	26040	broad.mit.edu	37	18	42532252	42532252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:42532252C>T	uc010dni.2	+	4	3243	c.2947C>T	c.(2947-2949)CCC>TCC	p.P983S		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	983						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GAATCCATATCCCAGCATTTT	0.453									Schinzel-Giedion_syndrome				52	64					0	0	0.014410	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45555767	45555767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:45555767G>A	uc002lda.2	-	2	1740	c.1724C>T	c.(1723-1725)GCC>GTC	p.A575V	ZBTB7C_uc002ldb.2_Missense_Mutation_p.A575V|ZBTB7C_uc010dnu.2_Missense_Mutation_p.A584V|ZBTB7C_uc010dnv.2_Missense_Mutation_p.A597V|ZBTB7C_uc010dnw.2_Missense_Mutation_p.A575V	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	575						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CAGCGCGAAGGCCAGGAGGCC	0.736													3	7					0	0	0.004672	0	0
CCDC11	220136	broad.mit.edu	37	18	47777253	47777253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:47777253C>T	uc002lee.2	-	5	962	c.871G>A	c.(871-873)GCC>ACC	p.A291T		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	291	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TCTTGTAGGGCTTTTTGCAAA	0.418													165	220					0	0	0.014410	0	0
CCDC11	220136	broad.mit.edu	37	18	47778003	47778003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:47778003G>A	uc002lee.2	-	4	716	c.625C>T	c.(625-627)CGA>TGA	p.R209*		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	209	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TTGGCTAATCGGTCTTCCTCC	0.527													118	152					0	0	0.014410	0	0
MAPK4	5596	broad.mit.edu	37	18	48252376	48252376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:48252376C>T	uc002lev.2	+	5	1898	c.898C>T	c.(898-900)CGC>TGC	p.R300C	MAPK4_uc010xdm.1_Missense_Mutation_p.R89C|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	300	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CCCCATGGATCGCCTAACAGC	0.547													53	99					0	0	0.014410	0	0
RAX	30062	broad.mit.edu	37	18	56936640	56936640	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:56936640T>G	uc002lhx.2	-	3	824	c.637A>C	c.(637-639)AGC>CGC	p.S213R	RAX_uc010dpp.2_3'UTR	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	213					visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		GGGGAGCGGCTGAAGGAGAGG	0.517													3	9					0	0	0.009096	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60217681	60217681	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:60217681A>G	uc002lip.3	+	5	1301	c.1301A>G	c.(1300-1302)GAG>GGG	p.E434G	ZCCHC2_uc002lio.2_RNA	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	434					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						CCTGACCTAGAGCCCATCCTA	0.493													9	11					0	0	0.006214	0	0
SERPINB7	8710	broad.mit.edu	37	18	61463551	61463551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:61463551G>A	uc002ljl.2	+	5	484	c.388G>A	c.(388-390)GAC>AAC	p.D130N	SERPINB7_uc002ljm.2_Missense_Mutation_p.D130N|SERPINB7_uc010xet.1_Missense_Mutation_p.D113N|SERPINB7_uc010dqg.2_Missense_Mutation_p.D130N	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	130					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GGAGCGAGTTGACTTTACGAA	0.333													35	32					0	0	0.019004	0	0
CCDC102B	79839	broad.mit.edu	37	18	66564531	66564531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:66564531G>A	uc002lkk.2	+	8	1352	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	CCDC102B_uc002lki.2_Missense_Mutation_p.E377K|CCDC102B_uc002lkj.1_Missense_Mutation_p.E377K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	377	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				GCAGGGACTGGAGAGAGAAAA	0.398													26	46					0	0	0.024334	0	0
RTTN	25914	broad.mit.edu	37	18	67844067	67844067	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:67844067G>A	uc002lkp.2	-	11	1388	c.1320C>T	c.(1318-1320)CTC>CTT	p.L440L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Silent_p.L440L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	440							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				CCAACACCAGGAGTAGTTTCT	0.418													37	62					0	0	0.023175	0	0
ZNF516	9658	broad.mit.edu	37	18	74091084	74091084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:74091084G>A	uc010dqx.1	-	3	3221	c.2986C>T	c.(2986-2988)CCT>TCT	p.P996S	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	996					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GGAGGTAGAGGAGGAGCGCCC	0.672													29	43					0	0	0.006320	0	0
ZNF516	9658	broad.mit.edu	37	18	74091180	74091181	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:74091180_74091181GG>AA	uc010dqx.1	-	3	3124_3125	c.2889_2890CC>TT	c.(2887-2892)GCCCCC>GCTTCC	p.P964S	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	964					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		TTATTTGTGGGGGCAAAGCCAG	0.658													35	65					0	0	0.004672	0	0
ZNF236	7776	broad.mit.edu	37	18	74659504	74659504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr18:74659504G>A	uc002lmi.2	+	27	5002	c.4804G>A	c.(4804-4806)GAT>AAT	p.D1602N	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1602					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GCTCCTCACGGATCCCTCTCT	0.478													72	70					0	0	0.014410	0	0
ABCA7	10347	broad.mit.edu	37	19	1046382	1046382	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:1046382C>T	uc002lqw.3	+	13	1830	c.1599C>T	c.(1597-1599)CCC>CCT	p.P533P	ABCA7_uc010dsb.1_Silent_p.P395P	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	533	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCAGATGCCCTATCCGTGCT	0.706													158	390					0	0	0.014410	0	0
ABCA7	10347	broad.mit.edu	37	19	1055172	1055172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:1055172C>T	uc002lqw.3	+	30	4258	c.4027C>T	c.(4027-4029)CCA>TCA	p.P1343S	ABCA7_uc010dsb.1_Missense_Mutation_p.P1205S|ABCA7_uc002lqy.2_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1343	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCTCCATCCCCAGCCTGCCA	0.682													7	28					0	0	0.001984	0	0
DOT1L	84444	broad.mit.edu	37	19	2226942	2226942	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:2226942C>T	uc002lvb.3	+	27	4458	c.4422C>T	c.(4420-4422)TTC>TTT	p.F1474F	DOT1L_uc002lvc.1_Silent_p.F768F	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1474						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACCGCAGTTCGCGCTCGGCC	0.776													22	49					0	0	0.024334	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2413892	2413892	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:2413892C>T	uc010xgx.1	+	9	1347	c.1347C>T	c.(1345-1347)GCC>GCT	p.A449A	TMPRSS9_uc002lvv.1_Silent_p.A483A	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	449	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCTCCTGCCCCTGCCGCCC	0.662													10	38					0	0	0.013537	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2415735	2415735	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:2415735G>A	uc010xgx.1	+	10	1539	c.1539G>A	c.(1537-1539)GGG>GGA	p.G513G		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	513	Extracellular (Potential).|Peptidase S1 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCCTCCGGGGAGGTGCCCT	0.667													36	60					0	0	0.007835	0	0
GNA15	2769	broad.mit.edu	37	19	3157840	3157840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:3157840C>T	uc002lxf.2	+	6	1117	c.859C>T	c.(859-861)CCC>TCC	p.P287S		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	287					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		GGAGAAAATCCCCACCTCCCA	0.483													100	246					0	0	0.014410	0	0
NFIC	4782	broad.mit.edu	37	19	3381895	3381895	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:3381895G>A	uc010xhi.1	+	2	278	c.216G>A	c.(214-216)TGG>TGA	p.W72*	NFIC_uc002lxo.2_Nonsense_Mutation_p.W63*|NFIC_uc010xhh.1_Nonsense_Mutation_p.W63*|NFIC_uc002lxp.2_Nonsense_Mutation_p.W72*|NFIC_uc010xhj.1_Nonsense_Mutation_p.W72*|NFIC_uc002lxq.1_Nonsense_Mutation_p.W24*	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	72	CTF/NF-I.				DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		AGCAGAAGTGGGCGTCGCGGC	0.652													66	157					0	0	0.014410	0	0
GIPC3	126326	broad.mit.edu	37	19	3586991	3586991	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:3586991C>T	uc002lyd.3	+	3	618	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	197										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGGGCCTTCGGTGAGGCGG	0.677											OREG0025154	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	31					0	0	0.024245	0	0
ANKRD24	170961	broad.mit.edu	37	19	4216338	4216338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:4216338C>T	uc010dtt.1	+	17	1604	c.1328C>T	c.(1327-1329)TCG>TTG	p.S443L	ANKRD24_uc002lzs.2_Missense_Mutation_p.S414L|ANKRD24_uc002lzt.2_Missense_Mutation_p.S415L	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	443	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		CACCTGGCCTCGCTGCAGGAA	0.632													5	7					0	0	0.021553	0	0
TMIGD2	126259	broad.mit.edu	37	19	4294678	4294678	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:4294678C>T	uc002lzx.1	-	4	495	c.449_splice	c.e4-1	p.G150_splice	TMIGD2_uc010dtv.1_Splice_Site_p.G150_splice	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain							integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGAGGAATCCTGGGTAGGGG	0.642													141	290					0	0	0.014410	0	0
PLIN4	729359	broad.mit.edu	37	19	4511331	4511331	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:4511331G>A	uc002mar.1	-	3	2599	c.2599C>T	c.(2599-2601)CAG>TAG	p.Q867*	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	867	27 X 33 AA approximate tandem repeat.|24.					lipid particle|plasma membrane					0						AGGCCCCCCTGGACGGCCCCT	0.572													42	183					0	0	0.014410	0	0
PLIN5	440503	broad.mit.edu	37	19	4523782	4523782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:4523782C>T	uc002mas.2	-	8	1203	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	384						lipid particle					0						TCGGGTCGCTCCACAAGGATG	0.746													20	64					0	0	0.008871	0	0
PLIN5	440503	broad.mit.edu	37	19	4534036	4534036	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:4534036C>T	uc002mas.2	-	2	104	c.51G>A	c.(49-51)CAG>CAA	p.Q17Q	PLIN5_uc002mat.1_Silent_p.Q17Q	NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	17						lipid particle					0						CCTGCTGGTCCTGCTCCCACA	0.607													8	31					0	0	0.004482	0	0
TMEM146	257062	broad.mit.edu	37	19	5746063	5746063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:5746063C>T	uc002mda.2	+	9	858	c.797C>T	c.(796-798)TCC>TTC	p.S266F	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	266	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTGTTGTTTTCCCATAATGCA	0.602													72	210					0	0	0.014410	0	0
C3	718	broad.mit.edu	37	19	6690727	6690727	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:6690727C>T	uc002mfm.2	-	27	3464	c.3402G>A	c.(3400-3402)CGG>CGA	p.R1134R	C3_uc002mfl.2_5'UTR	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1134					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CGTTGTTGTTCCGTAATCCAC	0.537													16	44					0	0	0.024245	0	0
C3	718	broad.mit.edu	37	19	6711027	6711027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:6711027C>T	uc002mfm.2	-	12	1512	c.1450G>A	c.(1450-1452)GAG>AAG	p.E484K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	484					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATCTTGGCCTCGTGGGCGCGG	0.602													104	276					0	0	0.014410	0	0
GPR108	56927	broad.mit.edu	37	19	6732083	6732083	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:6732083G>A	uc002mfp.2	-	13	1255	c.1209C>T	c.(1207-1209)TTC>TTT	p.F403F	GPR108_uc010duv.2_5'UTR|GPR108_uc002mfn.2_Silent_p.F74F|GPR108_uc002mfo.3_Silent_p.F161F|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	403	Helical; Name=5; (Potential).					integral to membrane					0						GGTCCACCAGGAACAAAATCT	0.642													33	59					0	0	0.013726	0	0
EMR1	2015	broad.mit.edu	37	19	6896522	6896522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:6896522C>T	uc002mfw.2	+	3	246	c.208C>T	c.(208-210)CAC>TAC	p.H70Y	EMR1_uc010dvc.2_Missense_Mutation_p.H70Y|EMR1_uc010dvb.2_Missense_Mutation_p.H70Y|EMR1_uc010xji.1_Missense_Mutation_p.H70Y|EMR1_uc010xjj.1_Missense_Mutation_p.H70Y	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	70	Extracellular (Potential).|EGF-like 1.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TGGGCAAAATCACTTCAAGGA	0.483													29	66					0	0	0.006320	0	0
EMR1	2015	broad.mit.edu	37	19	6897271	6897271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:6897271G>A	uc002mfw.2	+	4	388	c.350G>A	c.(349-351)GGA>GAA	p.G117E	EMR1_uc010dvc.2_Missense_Mutation_p.G117E|EMR1_uc010dvb.2_Intron|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Missense_Mutation_p.G117E	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	117	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TCTCCCACTGGAAATGACTGG	0.522													25	55					0	0	0.007291	0	0
C19orf45	374877	broad.mit.edu	37	19	7573215	7573215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7573215G>A	uc002mgm.2	+	9	1558	c.1417G>A	c.(1417-1419)GGC>AGC	p.G473S		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	473											0						TCCTCAGGAGGGCTTCGTGCC	0.597													14	54					0	0	0.024245	0	0
PNPLA6	10908	broad.mit.edu	37	19	7621579	7621579	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7621579C>T	uc010xjq.1	+	28	3474	c.3279C>T	c.(3277-3279)ATC>ATT	p.I1093I	PNPLA6_uc002mgq.1_Silent_p.I1045I|PNPLA6_uc010xjp.1_Silent_p.I1018I|PNPLA6_uc002mgr.1_Silent_p.I1045I|PNPLA6_uc002mgs.2_Silent_p.I1083I|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1084	Patatin.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CCACAGATATCACCGCCTCAG	0.667													35	61					0	0	0.015359	0	0
KIAA1543	57662	broad.mit.edu	37	19	7671380	7671380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7671380G>A	uc002mgv.3	+	4	645	c.544G>A	c.(544-546)GAG>AAG	p.E182K	KIAA1543_uc002mgu.3_Missense_Mutation_p.E182K	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	182	CH.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GCGGCTGCAGGAGAAGACCGA	0.716													6	12					0	0	0.021553	0	0
KIAA1543	57662	broad.mit.edu	37	19	7676432	7676432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7676432C>T	uc002mgv.3	+	10	1254	c.1153C>T	c.(1153-1155)CAT>TAT	p.H385Y	KIAA1543_uc002mgu.3_Missense_Mutation_p.H412Y	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	385					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GTCCATGTCCCATATGGAGGC	0.657													17	34					0	0	0.004990	0	0
CLEC4M	10332	broad.mit.edu	37	19	7831541	7831541	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7831541G>A	uc002mih.2	+	6	834	c.716_splice	c.e6-1	p.E239_splice	CLEC4M_uc010xjv.1_3'UTR|CLEC4M_uc002mhy.2_3'UTR|CLEC4M_uc010xjw.1_Splice_Site_p.E195_splice|CLEC4M_uc010dvt.2_Splice_Site_p.E216_splice|CLEC4M_uc010dvs.2_Splice_Site_p.E238_splice|CLEC4M_uc010xjx.1_Splice_Site_p.E211_splice|CLEC4M_uc002mhz.2_Splice_Site_p.E170_splice|CLEC4M_uc002mic.2_Splice_Site_p.E234_splice|CLEC4M_uc002mia.2_Splice_Site_p.E126_splice	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform						cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						TCCCCCAACAGAACGCCTGTG	0.557													37	120					0	0	0.021022	0	0
CLEC4GP1	440508	broad.mit.edu	37	19	7852839	7852839	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:7852839G>A	uc010xjy.1	+	2		c.160G>A			CLEC4GP1_uc002mij.2_RNA|CLEC4GP1_uc002mil.2_RNA|CLEC4GP1_uc002mim.2_5'Flank	NR_002931				Homo sapiens cDNA FLJ33370 fis, clone BRACE2005911.												0						TGTGGGCTGTGATTCTGAGTA	0.627													9	18					0	0	0.004482	0	0
ZNF414	84330	broad.mit.edu	37	19	8576745	8576745	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:8576745G>A	uc002mkf.2	-	5	748	c.630C>T	c.(628-630)CCC>CCT	p.P210P	ZNF414_uc002mke.3_Silent_p.P210P|ZNF414_uc010dwf.2_Silent_p.P199P	NM_032370	NP_115746	Q96IQ9	ZN414_HUMAN	zinc finger protein 414 isoform 2	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCAGGGCCGGGGGTGGCGGCG	0.726													10	26					0	0	0.010729	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651601	8651601	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:8651601C>T	uc002mkj.1	-	20	2518	c.2244G>A	c.(2242-2244)CTG>CTA	p.L748L	ADAMTS10_uc002mki.1_Silent_p.L235L|ADAMTS10_uc002mkk.1_Silent_p.L380L	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	748	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGTCTCCCTTCAGGGCTGGGG	0.642											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	61	159					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	8994510	8994510	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:8994510G>A	uc002mkp.2	-	64	41586	c.41382C>T	c.(41380-41382)ACC>ACT	p.T13794T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.T611T|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13796	Extracellular (Potential).|SEA 12.|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAAGTTGAGGGTGAATAGTA	0.453													33	108					0	0	0.012213	0	0
MUC16	94025	broad.mit.edu	37	19	9005204	9005205	+	Missense_Mutation	DNP	GG	AA	AA	rs75792671	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9005204_9005205GG>AA	uc002mkp.2	-	47	40076_40077	c.39872_39873CC>TT	c.(39871-39873)CCC>CTT	p.P13291L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P108L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCTGGTGGTGGGCACAGAGCT	0.52													10	51					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9020006	9020006	+	Silent	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9020006T>G	uc002mkp.2	-	21	37693	c.37489A>C	c.(37489-37491)AGG>CGG	p.R12497R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12499	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGACTGTTCCTGTCCAGGGTG	0.512													104	283					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9047708	9047708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9047708G>A	uc002mkp.2	-	5	34127	c.33923C>T	c.(33922-33924)TCA>TTA	p.S11308L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11310	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATAGTTGTTGAAATGGCTGA	0.488													21	56					0	0	0.010504	0	0
MUC16	94025	broad.mit.edu	37	19	9061105	9061105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9061105C>T	uc002mkp.2	-	3	26545	c.26341G>A	c.(26341-26343)GGA>AGA	p.G8781R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8783	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGCTGATCCTGTCGTGGTG	0.512													39	80					0	0	0.008740	0	0
MUC16	94025	broad.mit.edu	37	19	9063611	9063611	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9063611C>T	uc002mkp.2	-	3	24039	c.23835G>A	c.(23833-23835)CAG>CAA	p.Q7945Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7947	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTGCTCATCTGTGAGTGTG	0.468													30	76					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9065098	9065098	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9065098T>C	uc002mkp.2	-	3	22552	c.22348A>G	c.(22348-22350)AGT>GGT	p.S7450G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7452	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGCTCAAACTTGGAGGTGAA	0.483													37	110					0	0	0.027894	0	0
MUC16	94025	broad.mit.edu	37	19	9067599	9067599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9067599G>A	uc002mkp.2	-	3	20051	c.19847C>T	c.(19846-19848)CCA>CTA	p.P6616L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6618	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTTTGGGTGGTTCTGAGTA	0.453													66	142					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9067811	9067811	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9067811G>A	uc002mkp.2	-	3	19839	c.19635C>T	c.(19633-19635)CCC>CCT	p.P6545P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6547	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCAGAGGTGGGGAGTGAAG	0.498													11	27					0	0	0.010729	0	0
MUC16	94025	broad.mit.edu	37	19	9072587	9072587	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9072587G>A	uc002mkp.2	-	3	15063	c.14859C>T	c.(14857-14859)TCC>TCT	p.S4953S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4955	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTTCTGTGGAGATGTCTA	0.512													37	94					0	0	0.021022	0	0
MUC16	94025	broad.mit.edu	37	19	9075783	9075783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9075783G>A	uc002mkp.2	-	3	11867	c.11663C>T	c.(11662-11664)TCT>TTT	p.S3888F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3889	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGAGACAGAATTCATCAT	0.458													15	34					0	0	0.024245	0	0
MUC16	94025	broad.mit.edu	37	19	9076568	9076568	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9076568G>A	uc002mkp.2	-	3	11082	c.10878C>T	c.(10876-10878)GAC>GAT	p.D3626D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3627	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGACATGGAGTCTAATTCAG	0.448													33	70					0	0	0.013726	0	0
MUC16	94025	broad.mit.edu	37	19	9089200	9089200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9089200G>A	uc002mkp.2	-	1	2819	c.2615C>T	c.(2614-2616)CCA>CTA	p.P872L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	872	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGACACAGATGGATTCGAAGT	0.488													23	48					0	0	0.014323	0	0
ZNF177	7730	broad.mit.edu	37	19	9492219	9492219	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9492219C>T	uc002mli.2	+	12	1395	c.732C>T	c.(730-732)TCC>TCT	p.S244S	ZNF177_uc002mlj.2_Silent_p.S194S|ZNF177_uc002mlk.2_Silent_p.S244S	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	244	C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTGGAAAGTCCTTCAGCACAG	0.453													43	122					0	0	0.008740	0	0
ZNF266	10781	broad.mit.edu	37	19	9524886	9524886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9524886G>A	uc002mll.2	-	4	981	c.715C>T	c.(715-717)CCC>TCC	p.P239S	ZNF266_uc002mlm.2_Missense_Mutation_p.P239S|ZNF266_uc002mln.2_Missense_Mutation_p.P239S|ZNF266_uc002mlo.2_Missense_Mutation_p.P239S|ZNF266_uc010dwp.2_Missense_Mutation_p.P239S|ZNF266_uc010dwq.2_Missense_Mutation_p.P239S	NM_198058	NP_932175	Q14584	ZN266_HUMAN	zinc finger protein 266	239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACTCATAGGGATTGTCTCCA	0.408													36	87					0	0	0.019004	0	0
COL5A3	50509	broad.mit.edu	37	19	10081882	10081882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:10081882G>A	uc002mmq.1	-	52	3913	c.3827C>T	c.(3826-3828)TCA>TTA	p.S1276L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1276	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CACACTCACTGAAACTCCAGG	0.542													14	57					0	0	0.007413	0	0
COL5A3	50509	broad.mit.edu	37	19	10087955	10087955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:10087955C>T	uc002mmq.1	-	44	3324	c.3238G>A	c.(3238-3240)GAT>AAT	p.D1080N		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1080	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GCACCCACATCCCCCTGCAGA	0.612													45	117					0	0	0.010771	0	0
COL5A3	50509	broad.mit.edu	37	19	10088055	10088055	+	Missense_Mutation	SNP	C	T	T	rs148194988	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:10088055C>T	uc002mmq.1	-	43	3306	c.3220G>A	c.(3220-3222)GAG>AAG	p.E1074K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1074	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCCCTTCCTCGCCAGAAGGC	0.652													97	279					0	0	0.014410	0	0
COL5A3	50509	broad.mit.edu	37	19	10114820	10114821	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:10114820_10114821CC>TT	uc002mmq.1	-	5	681_682	c.595_596GG>AA	c.(595-597)GGA>AAA	p.G199K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	199	TSP N-terminal.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTGAATGTCTCCCTGGGGGTTG	0.619													26	78					0	0	0.004672	0	0
FDX1L	112812	broad.mit.edu	37	19	10426415	10426415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:10426415C>T	uc002mny.1	-	2	185	c.166G>A	c.(166-168)GAG>AAG	p.E56K	FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	56					electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			CCCGCGTCCTCCTCTCCAGCC	0.721													3	7					0	0	0.004672	0	0
SMARCA4	6597	broad.mit.edu	37	19	11152215	11152215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:11152215C>T	uc002mqf.3	+	30	4687	c.4403C>T	c.(4402-4404)GCC>GTC	p.A1468V	SMARCA4_uc010dxp.2_Missense_Mutation_p.A1468V|SMARCA4_uc010dxo.2_Missense_Mutation_p.A1500V|SMARCA4_uc010dxq.2_Missense_Mutation_p.A1435V|SMARCA4_uc010dxr.2_Missense_Mutation_p.A1435V|SMARCA4_uc002mqj.3_Missense_Mutation_p.A1438V|SMARCA4_uc010dxs.2_Missense_Mutation_p.A1438V|SMARCA4_uc002mqh.3_Missense_Mutation_p.A558V	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1468					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				ATTGTGGATGCCGTGATCAAG	0.612			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				24	49					0	0	0.007291	0	0
ZNF823	55552	broad.mit.edu	37	19	11833694	11833694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:11833694G>A	uc002msm.2	-	4	781	c.655C>T	c.(655-657)CCG>TCG	p.P219S	ZNF823_uc010xmd.1_Missense_Mutation_p.P37S|ZNF823_uc010dyi.1_Missense_Mutation_p.P175S	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	219					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CATTCATACGGTTTCTCTCCA	0.403										HNSCC(68;0.2)			61	164					0	0	0.014410	0	0
ZNF443	10224	broad.mit.edu	37	19	12542018	12542018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:12542018G>A	uc002mtu.2	-	4	1166	c.968C>T	c.(967-969)TCC>TTC	p.S323F		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	323	C2H2-type 7.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TCTTTGAAGGGAACCGGAAAC	0.433													52	119					0	0	0.014410	0	0
FBXW9	84261	broad.mit.edu	37	19	12802235	12802235	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:12802235G>C	uc010dyx.2	-	4	682	c.682C>G	c.(682-684)CGC>GGC	p.R228G	FBXW9_uc010xmp.1_Intron|FBXW9_uc002mum.1_Missense_Mutation_p.R238G|FBXW9_uc002mun.1_Missense_Mutation_p.R75G	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	238	WD 2.						protein binding			ovary(1)	1						GAGCACACGCGGTGGTCCTGC	0.652													9	6					0	0	0.006214	0	0
STX10	8677	broad.mit.edu	37	19	13255265	13255265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:13255265C>T	uc010xnb.1	-	8	709	c.709G>A	c.(709-711)GGG>AGG	p.G237R	STX10_uc002mwn.2_3'UTR|STX10_uc002mwo.2_3'UTR|STX10_uc010xna.1_RNA|STX10_uc010xnc.1_Missense_Mutation_p.G138R	NM_003765	NP_003756	O60499	STX10_HUMAN	syntaxin 10	237	Helical; Anchor for type IV membrane protein; (Potential).				Golgi vesicle transport|intracellular protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane	SNAP receptor activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.41e-21)			AGAAGCACCCCCACTAGCACG	0.617													12	26					0	0	0.016723	0	0
CACNA1A	773	broad.mit.edu	37	19	13366061	13366061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:13366061C>T	uc010dze.2	-	29	4842	c.4606G>A	c.(4606-4608)GAT>AAT	p.D1536N	CACNA1A_uc010xnd.1_Missense_Mutation_p.D241N|CACNA1A_uc002mwx.3_Missense_Mutation_p.D241N|CACNA1A_uc010dzc.2_Missense_Mutation_p.D1061N|CACNA1A_uc002mwy.3_Missense_Mutation_p.D1535N|CACNA1A_uc010xne.1_Missense_Mutation_p.D1064N|CACNA1A_uc002mwv.3_Missense_Mutation_p.D52N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1536	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ATGGCGAAATCAATGCAGGCC	0.617													6	10					0	0	0.001984	0	0
CC2D1A	54862	broad.mit.edu	37	19	14020719	14020719	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:14020719C>T	uc002mxo.2	+	2	443	c.144C>T	c.(142-144)TTC>TTT	p.F48F	CC2D1A_uc002mxn.2_Missense_Mutation_p.S8F|CC2D1A_uc002mxp.2_Silent_p.F48F	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	48					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			AGGCTGAGTTCTTGGCTTTGG	0.522													45	68					0	0	0.013114	0	0
PRKACA	5566	broad.mit.edu	37	19	14213654	14213654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:14213654G>A	uc002myc.2	-	4	510	c.310C>T	c.(310-312)CTC>TTC	p.L104F	PRKACA_uc002myb.2_Missense_Mutation_p.L96F|PRKACA_uc010xnm.1_Missense_Mutation_p.L46F|PRKACA_uc002myd.2_Missense_Mutation_p.L46F	NM_002730	NP_002721	P17612	KAPCA_HUMAN	cAMP-dependent protein kinase catalytic subunit	104	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding			lung(1)	1						AGTTTGACGAGGAACGGAAAG	0.592													54	121					0	0	0.014410	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710921	14710921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:14710921C>T	uc010dzn.1	+	12	898	c.821C>T	c.(820-822)TCA>TTA	p.S274L	CLEC17A_uc002mzh.1_Missense_Mutation_p.S257L|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.S274L			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	274	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						AGCACCAAGTCATGGGATGAG	0.522													27	108					0	0	0.007291	0	0
OR7C2	26658	broad.mit.edu	37	19	15052452	15052452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15052452C>T	uc010xoc.1	+	1	152	c.152C>T	c.(151-153)TCA>TTA	p.S51L		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					ACCATCAGTTCAGACTCCCAC	0.517													84	96					0	0	0.014410	0	0
OR1I1	126370	broad.mit.edu	37	19	15198369	15198369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15198369C>T	uc010xoe.1	+	1	493	c.493C>T	c.(493-495)CAA>TAA	p.Q165*		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						CCTCATGGCTCAACTGACCTT	0.562													39	129					0	0	0.009718	0	0
AKAP8L	26993	broad.mit.edu	37	19	15507970	15507970	+	Silent	SNP	C	T	T	rs45541735		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15507970C>T	uc002naw.1	-	12	1626	c.1527G>A	c.(1525-1527)CGG>CGA	p.R509R	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Silent_p.R448R	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	509						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						CCCTGCGGTTCCGGTTGTGAT	0.572													222	269					0	0	0.014410	0	0
RASAL3	64926	broad.mit.edu	37	19	15567445	15567445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15567445C>T	uc002nbe.2	-	10	1530	c.1444G>A	c.(1444-1446)GAC>AAC	p.D482N	RASAL3_uc002nbd.2_5'Flank|RASAL3_uc010eaa.1_5'UTR	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	482	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						GTGCCCAGGTCAGTCACCAGC	0.602													22	29					0	0	0.024334	0	0
OR10H2	26538	broad.mit.edu	37	19	15839200	15839200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15839200C>T	uc002nbm.2	+	1	367	c.347C>T	c.(346-348)ACC>ATC	p.T116I		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					TTCCTGCTCACCGTCATGGGC	0.652													30	125					0	0	0.011902	0	0
OR10H3	26532	broad.mit.edu	37	19	15852409	15852409	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15852409C>T	uc010xoq.1	+	1	207	c.207C>T	c.(205-207)ATC>ATT	p.I69I		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCTCTCCATCTCTGAGATTC	0.502													106	480					0	0	0.014410	0	0
OR10H5	284433	broad.mit.edu	37	19	15905563	15905563	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15905563G>A	uc010xos.1	+	1	705	c.705G>A	c.(703-705)CGG>CGA	p.R235R		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGAAGGTCGGAACAAGGCCT	0.562													36	122					0	0	0.010771	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990451	15990451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:15990451C>T	uc002nbs.1	-	11	1327	c.1277G>A	c.(1276-1278)GGA>GAA	p.G426E	CYP4F2_uc010xot.1_Missense_Mutation_p.G277E	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	426					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GTGATGGGTTCCGAAAACACT	0.587													84	424					0	0	0.014410	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038271	16038271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:16038271C>T	uc002nbu.2	-	4	402	c.366G>A	c.(364-366)ATG>ATA	p.M122I	CYP4F11_uc010eab.1_Missense_Mutation_p.M122I|CYP4F11_uc002nbt.2_Missense_Mutation_p.M122I	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	122					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CATAGAAAATCATATCCTTGG	0.537													119	515					0	0	0.014410	0	0
CYP4F11	57834	broad.mit.edu	37	19	16040318	16040318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:16040318G>A	uc002nbu.2	-	3	328	c.292C>T	c.(292-294)CTC>TTC	p.L98F	CYP4F11_uc010eab.1_Missense_Mutation_p.L98F|CYP4F11_uc002nbt.2_Missense_Mutation_p.L98F	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	98					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AAAATGAGGAGGGGGAAGGTA	0.552													68	369					0	0	0.014410	0	0
CPAMD8	27151	broad.mit.edu	37	19	17017847	17017847	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:17017847G>A	uc002nfb.2	-	30	4115	c.4083C>T	c.(4081-4083)GCC>GCT	p.A1361A		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1314						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AGGTAGTCAGGGCACAGCTAT	0.657													21	52					0	0	0.016522	0	0
PLVAP	83483	broad.mit.edu	37	19	17476205	17476205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:17476205C>T	uc002ngk.1	-	3	1119	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	357	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						TTGTCTCGTTCCTTCCGCAGC	0.622													68	193					0	0	0.014410	0	0
NXNL1	115861	broad.mit.edu	37	19	17571610	17571610	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:17571610C>T	uc002ngs.2	-	1	116	c.69G>A	c.(67-69)GAG>GAA	p.E23E		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	23	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						TGACCTCAGCCTCCGTATCCA	0.622													98	151					0	0	0.014410	0	0
B3GNT3	10331	broad.mit.edu	37	19	17918894	17918894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:17918894C>T	uc002nhk.1	+	2	363	c.278C>T	c.(277-279)CCC>CTC	p.P93L	B3GNT3_uc002nhl.1_Missense_Mutation_p.P93L|B3GNT3_uc010ebd.1_Missense_Mutation_p.P93L|B3GNT3_uc010ebe.1_Missense_Mutation_p.P93L	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	93	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CGCCACTTTCCCCTGCTGCAG	0.632													44	60					0	0	0.014410	0	0
INSL3	3640	broad.mit.edu	37	19	17927841	17927841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:17927841C>T	uc002nhm.1	-	2	223	c.218G>A	c.(217-219)CGA>CAA	p.R73Q	INSL3_uc010ebf.1_Missense_Mutation_p.D105N|INSL3_uc010ebg.1_RNA	NM_005543	NP_005534	P51460	INSL3_HUMAN	insulin-like 3 precursor	73					cell-cell signaling|spermatogenesis	soluble fraction	hormone activity|insulin receptor binding|signal transducer activity				0						GAGCAGATGTCGTCTCTCCAG	0.602													44	61					0	0	0.011902	0	0
IL12RB1	3594	broad.mit.edu	37	19	18170811	18170811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:18170811C>T	uc002nhw.1	-	16	1940	c.1876G>A	c.(1876-1878)GGC>AGC	p.G626S	IL12RB1_uc010xqb.1_Missense_Mutation_p.G626S|IL12RB1_uc002nhx.1_Missense_Mutation_p.G666S	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	626	Cytoplasmic (Potential).				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						GTCCTCTCGCCTTTGTCCCAG	0.587													26	30					0	0	0.024334	0	0
PIK3R2	5296	broad.mit.edu	37	19	18273314	18273314	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:18273314C>T	uc002nia.1	+	9	1619	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	369	SH2 1.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						CGCTGACCCTCAGGTGGGGGC	0.572													44	48					0	0	0.013114	0	0
PIK3R2	5296	broad.mit.edu	37	19	18274115	18274115	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:18274115C>T	uc002nia.1	+	11	1845	c.1333C>T	c.(1333-1335)CAG>TAG	p.Q445*	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	445					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						AGTGGGCGCCCAGCTTAAGGT	0.572													45	155					0	0	0.013114	0	0
PDE4C	5143	broad.mit.edu	37	19	18328995	18328995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:18328995G>A	uc010xqc.1	-	11	1774	c.1294C>T	c.(1294-1296)CAT>TAT	p.H432Y	PDE4C_uc002nik.3_Missense_Mutation_p.H432Y|PDE4C_uc002nil.3_Missense_Mutation_p.H432Y|PDE4C_uc002nif.3_Missense_Mutation_p.H201Y|PDE4C_uc002nig.3_Missense_Mutation_p.H147Y|PDE4C_uc002nih.3_Missense_Mutation_p.H202Y|PDE4C_uc010ebk.2_Missense_Mutation_p.H326Y|PDE4C_uc002nii.3_Missense_Mutation_p.H400Y|PDE4C_uc010ebl.2_Missense_Mutation_p.H146Y|PDE4C_uc010xqd.1_Missense_Mutation_p.H201Y	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	432					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	ACCCCAGGATGGTCCACGTCG	0.597													130	156					0	0	0.014410	0	0
CRLF1	9244	broad.mit.edu	37	19	18705159	18705159	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:18705159G>T	uc010ebt.1	-	7	1304	c.1110C>A	c.(1108-1110)TTC>TTA	p.F370L		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	370					negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						GCCAGCCCAGGAACTGCTTGA	0.587													31	39					1.08312e-15	1.10165e-15	0.009535	1	0
TM6SF2	53345	broad.mit.edu	37	19	19381838	19381838	+	Silent	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:19381838G>C	uc002nmd.1	-	2	242	c.192C>G	c.(190-192)CTC>CTG	p.L64L	HAPLN4_uc002nmc.2_5'UTR	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	64	Helical; (Potential).					integral to membrane					0			Epithelial(12;0.0151)			CACCAGCATAGAGTGGGTCAT	0.592													73	259					0	0	0.014410	0	0
ZNF85	7639	broad.mit.edu	37	19	21132809	21132809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:21132809C>T	uc002npg.3	+	4	1616	c.1489C>T	c.(1489-1491)CTT>TTT	p.L497F	ZNF85_uc010ecn.2_Missense_Mutation_p.L432F|ZNF85_uc010eco.2_Missense_Mutation_p.L445F|ZNF85_uc002npi.2_Missense_Mutation_p.L438F	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	497	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						GCCCTCAACCCTTACTATCCA	0.348													42	46					0	0	0.009718	0	0
ZNF430	80264	broad.mit.edu	37	19	21240276	21240276	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:21240276C>A	uc002npj.2	+	5	1272	c.1162C>A	c.(1162-1164)CTT>ATT	p.L388I	ZNF430_uc002npk.2_Missense_Mutation_p.L387I	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	388	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						ATTCTCATACCTTACTAAACA	0.353													43	45					4.0492e-12	4.11596e-12	0.027894	1	0
ZNF493	284443	broad.mit.edu	37	19	21606448	21606448	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:21606448C>T	uc002npx.2	+	2	883	c.603C>T	c.(601-603)GCC>GCT	p.A201A	ZNF493_uc002npw.2_Silent_p.A329A|ZNF493_uc002npy.2_Silent_p.A201A	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	201	C2H2-type 7; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTGGCAAAGCCTTTAGTATTT	0.343													15	63					0	0	0.020292	0	0
ZNF208	7757	broad.mit.edu	37	19	22154826	22154826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22154826C>T	uc002nqp.2	-	6	2775	c.2626G>A	c.(2626-2628)GAA>AAA	p.E876K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCACATTCTTCACATTTGTAG	0.368													27	41					0	0	0.024334	0	0
ZNF208	7757	broad.mit.edu	37	19	22157237	22157237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22157237G>A	uc002nqp.2	-	4	748	c.599C>T	c.(598-600)TCC>TTC	p.S200F	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACATTTGTAGGAATTCTCTCT	0.353													12	65					0	0	0.016723	0	0
ZNF676	163223	broad.mit.edu	37	19	22362810	22362810	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22362810A>T	uc002nqs.1	-	3	2027	c.1709T>A	c.(1708-1710)TTT>TAT	p.F570Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	570	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				GGATGACTTAAAAGCTTTGCC	0.388													37	53					0	0	0.023175	0	0
ZNF676	163223	broad.mit.edu	37	19	22364321	22364321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22364321C>T	uc002nqs.1	-	3	516	c.198G>A	c.(196-198)ATG>ATA	p.M66I		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	66					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTCTCAATATCATTTTTTGGA	0.303													12	46					0	0	0.010729	0	0
ZNF98	148198	broad.mit.edu	37	19	22574340	22574340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22574340C>T	uc002nqt.2	-	4	1819	c.1697G>A	c.(1696-1698)AGA>AAA	p.R566K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	566					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				AGCACAATTTCTTTTATATTT	0.328													11	9					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	19	22780192	22780192	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22780192C>T	uc002nqu.3	+	2		c.270C>T								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		GGTTGCCACTCACCTGGAGAT	0.418													28	114					0	0	0.007291	0	0
ZNF99	7652	broad.mit.edu	37	19	22939385	22939385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22939385G>A	uc010xrh.1	-	7	2786	c.2786C>T	c.(2785-2787)TCA>TTA	p.S929L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AGTAAGGTGTGAGGATTGCTT	0.368													30	34					0	0	0.009535	0	0
ZNF99	7652	broad.mit.edu	37	19	22941065	22941065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:22941065G>A	uc010xrh.1	-	5	1373	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.333													38	46					0	0	0.023175	0	0
Unknown	0	broad.mit.edu	37	19	23159380	23159380	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:23159380C>T	uc002nqy.1	-	3		c.770G>A			uc002nqz.1_Silent_p.E189E					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		TGTAATGTTTCTCTCCAGTAT	0.403													9	45					0	0	0.004482	0	0
ZNF675	171392	broad.mit.edu	37	19	23837110	23837110	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:23837110C>A	uc002nri.2	-	4	807	c.625G>T	c.(625-627)GTT>TTT	p.V209F		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	209	C2H2-type 3; degenerate.			Missing (in Ref. 2; BAC04216).	bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GATTGGTTAACAGCTTTTTCA	0.323													28	19					4.59853e-10	4.66723e-10	0.027356	1	0
PLEKHF1	79156	broad.mit.edu	37	19	30165443	30165443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:30165443C>T	uc002nsh.3	+	2	799	c.697C>T	c.(697-699)CAC>TAC	p.H233Y	PLEKHF1_uc002nsi.3_Missense_Mutation_p.H318Y	NM_024310	NP_077286	Q96S99	PKHF1_HUMAN	apoptosis-inducing protein D	233					apoptosis	lysosome|nucleus|perinuclear region of cytoplasm	metal ion binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			GCAGCCAGCCCACCTGGCCCG	0.726													5	7					0	0	0.021553	0	0
ZNF536	9745	broad.mit.edu	37	19	30936285	30936285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:30936285G>A	uc002nsu.1	+	2	1954	c.1816G>A	c.(1816-1818)GAT>AAT	p.D606N	ZNF536_uc010edd.1_Missense_Mutation_p.D606N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	606					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGCAGTCGGGATTTTTTGTC	0.552													67	105					0	0	0.014410	0	0
ZNF536	9745	broad.mit.edu	37	19	31039215	31039215	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:31039215T>A	uc002nsu.1	+	4	2827	c.2689T>A	c.(2689-2691)TTC>ATC	p.F897I	ZNF536_uc010edd.1_Missense_Mutation_p.F897I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	897					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGCACCCACTTCTCTGAGAT	0.517													104	156					0	0	0.014410	0	0
RHPN2	85415	broad.mit.edu	37	19	33512498	33512498	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:33512498G>A	uc002nuf.2	-	4	435	c.369C>T	c.(367-369)GTC>GTT	p.V123V	RHPN2_uc010xro.1_Intron|RHPN2_uc002nue.2_5'UTR	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	123	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					CTGCAAAGTCGACGTCTTTCG	0.433													25	48					0	0	0.027356	0	0
MLL4	9757	broad.mit.edu	37	19	36222932	36222932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:36222932C>T	uc010eei.2	+	28	5561	c.5561C>T	c.(5560-5562)CCT>CTT	p.P1854L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1854					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCGCCCCTCCTCCAGCCCCC	0.642													11	20					0	0	0.010729	0	0
KIRREL2	84063	broad.mit.edu	37	19	36357122	36357122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:36357122C>T	uc002ocb.3	+	15	2067	c.1855C>T	c.(1855-1857)CCT>TCT	p.P619S	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Missense_Mutation_p.P566S|KIRREL2_uc002ocd.3_Missense_Mutation_p.P581S|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	619	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGCGAAGCCCCTGGAGGAGG	0.612													51	79					0	0	0.014410	0	0
RYR1	6261	broad.mit.edu	37	19	38934370	38934370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:38934370C>T	uc002oit.2	+	5	488	c.358C>T	c.(358-360)CTC>TTC	p.L120F	RYR1_uc002oiu.2_Missense_Mutation_p.L120F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	120	Cytoplasmic.|MIR 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCTGAGCTGCCTCACCACCTC	0.632													31	75					0	0	0.015359	0	0
RYR1	6261	broad.mit.edu	37	19	38939129	38939129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:38939129C>T	uc002oit.2	+	10	1065	c.935C>T	c.(934-936)TCC>TTC	p.S312F	RYR1_uc002oiu.2_Missense_Mutation_p.S312F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	312	MIR 4.|Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AAGGCTACCTCCTTCTGCTTC	0.647													76	134					0	0	0.014410	0	0
RYR1	6261	broad.mit.edu	37	19	38976621	38976621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:38976621C>T	uc002oit.2	+	34	5456	c.5326C>T	c.(5326-5328)CAT>TAT	p.H1776Y	RYR1_uc002oiu.2_Missense_Mutation_p.H1776Y	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1776	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCCCCCGCATCATTTCTCGCC	0.687													46	50					0	0	0.014410	0	0
FBXO27	126433	broad.mit.edu	37	19	39516072	39516072	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:39516072G>A	uc002okh.2	-	6	913	c.831C>T	c.(829-831)ATC>ATT	p.I277I		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	277	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GGACTCGCACGATCACACTGG	0.587													56	70					0	0	0.014410	0	0
ZFP36	7538	broad.mit.edu	37	19	39898530	39898530	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:39898530T>A	uc002olh.1	+	2	230	c.172T>A	c.(172-174)TCC>ACC	p.S58T	ZFP36_uc010egn.1_5'UTR	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	58					positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCCTGGCCGCTCCACCAGCCT	0.736													33	38					0	0	0.013726	0	0
SELV	348303	broad.mit.edu	37	19	40006639	40006639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:40006639G>A	uc010xvc.1	+	1	887	c.787G>A	c.(787-789)GTC>ATC	p.V263I		NM_182704	NP_874363	P59797	SELV_HUMAN	selenoprotein V	263					cell redox homeostasis		selenium binding				0	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;8.61e-26)|all cancers(26;2.76e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGACAAGAGGGTCCTGATTCG	0.642													5	12					0	0	0.001984	0	0
FCGBP	8857	broad.mit.edu	37	19	40433120	40433120	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:40433120C>T	uc002omp.3	-	2	1157	c.1149G>A	c.(1147-1149)TGG>TGA	p.W383*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	383	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCACAGCCTCCCAGGTGAGCT	0.617													37	27					0	0	0.009718	0	0
PRX	57716	broad.mit.edu	37	19	40900362	40900362	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:40900362C>T	uc002onr.2	-	7	4166	c.3897G>A	c.(3895-3897)GAG>GAA	p.E1299E	PRX_uc002onq.2_Silent_p.E1160E|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1299					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGTGTCCGGCCTCTCCCTCCC	0.682													6	11					0	0	0.001984	0	0
SPTBN4	57731	broad.mit.edu	37	19	41072235	41072235	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:41072235G>A	uc002ony.2	+	30	6392	c.6306G>A	c.(6304-6306)GAG>GAA	p.E2102E	SPTBN4_uc002onz.2_Silent_p.E2102E|SPTBN4_uc010egx.2_Silent_p.E845E	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2102	Spectrin 18.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTGGGAAGAGAGGTTCAGCT	0.642													4	8					0	0	0.009096	0	0
CEACAM21	90273	broad.mit.edu	37	19	42085753	42085753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:42085753G>A	uc002ore.3	+	3	568	c.472G>A	c.(472-474)GAG>AAG	p.E158K	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Missense_Mutation_p.E158K	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	158	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CACAGTCACAGAGAAGGGCTC	0.537													23	40					0	0	0.018920	0	0
PSG4	5672	broad.mit.edu	37	19	43709640	43709640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:43709640C>T	uc002ovy.2	-	1	151	c.49G>A	c.(49-51)GGG>AGG	p.G17R	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.G17R|PSG4_uc002ovz.2_Missense_Mutation_p.G17R	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	17					defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				AGCAGGACCCCCTTCCAGGTG	0.587													24	36					0	0	0.014410	0	0
PSG9	5678	broad.mit.edu	37	19	43762387	43762387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:43762387C>T	uc002owd.3	-	5	1309	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG9_uc002owe.3_Missense_Mutation_p.E311K|PSG9_uc010xwm.1_Missense_Mutation_p.E311K|PSG9_uc002owf.3_Missense_Mutation_p.E218K|PSG9_uc002owg.2_Missense_Mutation_p.E311K|PSG9_uc002owh.2_Missense_Mutation_p.E218K	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	404	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTGGAGATTTCCTTGCCAGTG	0.448													104	170					0	0	0.014410	0	0
ZNF404	342908	broad.mit.edu	37	19	44377825	44377825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:44377825G>A	uc002oxs.3	-	2	541	c.532C>T	c.(532-534)CAC>TAC	p.H178Y		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	181	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AAATCAGTGTGGATTTTTCGA	0.363													20	30					0	0	0.008871	0	0
ZNF224	7767	broad.mit.edu	37	19	44611467	44611467	+	Missense_Mutation	SNP	C	T	T	rs138098649	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:44611467C>T	uc002oyh.1	+	6	1456	c.1154C>T	c.(1153-1155)TCG>TTG	p.S385L	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	385	C2H2-type 8.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				AGATGGGCCTCGTGTCTTTTG	0.418													52	57					0	0	0.014410	0	0
CEACAM20	125931	broad.mit.edu	37	19	45016134	45016134	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:45016134T>C	uc010ejn.1	-	10	1532	c.1516A>G	c.(1516-1518)AGC>GGC	p.S506G	CEACAM20_uc010ejo.1_Missense_Mutation_p.S506G|CEACAM20_uc010ejp.1_Missense_Mutation_p.S413G|CEACAM20_uc010ejq.1_Missense_Mutation_p.S413G	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	506	Cytoplasmic (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GGACTCAGGCTTTCTAGAAAA	0.522													43	67					0	0	0.014410	0	0
CEACAM20	125931	broad.mit.edu	37	19	45021274	45021274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:45021274G>A	uc010ejn.1	-	6	1058	c.1042C>T	c.(1042-1044)CAA>TAA	p.Q348*	CEACAM20_uc010ejo.1_Nonsense_Mutation_p.Q348*|CEACAM20_uc010ejp.1_Intron|CEACAM20_uc010ejq.1_Intron	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	348	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				ATGTGCACTTGGTCAGGACCA	0.552													44	67					0	0	0.014410	0	0
PRKD2	25865	broad.mit.edu	37	19	47204181	47204181	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:47204181G>A	uc002pfh.2	-	8	1338	c.996C>T	c.(994-996)TTC>TTT	p.F332F	PRKD2_uc002pfg.2_Silent_p.F175F|PRKD2_uc002pfi.2_Silent_p.F332F|PRKD2_uc002pfj.2_Silent_p.F332F|PRKD2_uc010xye.1_Silent_p.F332F|PRKD2_uc002pfk.2_Silent_p.F175F	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	332					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		CAGCCTCGCTGAAATCGGTGG	0.637													32	54					0	0	0.015359	0	0
C5AR1	728	broad.mit.edu	37	19	47823154	47823154	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:47823154C>T	uc002pgj.1	+	2	169	c.120C>T	c.(118-120)GCC>GCT	p.A40A		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	40	Helical; Name=1; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		ACATCCTGGCCTTGGTCATCT	0.552													51	77					0	0	0.014410	0	0
SULT2A1	6822	broad.mit.edu	37	19	48385458	48385458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:48385458G>A	uc002phr.2	-	3	495	c.355C>T	c.(355-357)CTC>TTC	p.L119F		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	119				L -> D (in Ref. 1; AA sequence).	3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		TTTCTCATGAGATAAATCACC	0.328													49	57					0	0	0.014410	0	0
CABP5	56344	broad.mit.edu	37	19	48547171	48547171	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:48547171G>A	uc002phu.1	-	1	134	c.9C>T	c.(7-9)TTC>TTT	p.F3F		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	3					signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		GGCCCATGGGGAACTGCATGG	0.468													21	26					0	0	0.012319	0	0
FAM83E	54854	broad.mit.edu	37	19	49107049	49107049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:49107049G>A	uc002pjn.2	-	4	943	c.878C>T	c.(877-879)CCT>CTT	p.P293L	SPACA4_uc002pjo.2_5'Flank	NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	293										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGGGGGCGCAGGTGGGAGCGG	0.721													12	16					0	0	0.010729	0	0
NAPSB	256236	broad.mit.edu	37	19	50838178	50838178	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:50838178G>A	uc002prw.2	-	7	837	c.61C>T	c.(61-63)CTG>TTG	p.L21L	NR1H2_uc002prv.3_Intron	NR_002798				Homo sapiens napsin B pseudogene, mRNA sequence.											central_nervous_system(1)	1						CCTGTATCCAGGATGGCAGCA	0.617													12	27					0	0	0.010729	0	0
SPIB	6689	broad.mit.edu	37	19	50923207	50923207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:50923207G>A	uc002psd.2	+	2	53	c.28G>A	c.(28-30)GAC>AAC	p.D10N	SPIB_uc002pse.2_Missense_Mutation_p.D10N|SPIB_uc010ycc.1_5'UTR	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	10	TAD1 (Acidic).				regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CTCCAGGCTCGACGGGCCACA	0.647													14	13					0	0	0.004990	0	0
SHANK1	50944	broad.mit.edu	37	19	51165511	51165511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51165511C>T	uc002psx.1	-	23	6216	c.6197G>A	c.(6196-6198)GGG>GAG	p.G2066E	SHANK1_uc002psw.1_Missense_Mutation_p.G1450E	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2066					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CAAGGCTCCCCCGAGCCCCCC	0.687													16	25					0	0	0.004990	0	0
SHANK1	50944	broad.mit.edu	37	19	51215336	51215336	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51215336C>T	uc002psx.1	-	6	847	c.828G>A	c.(826-828)AAG>AAA	p.K276K		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	276	ANK 2.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCCGACGGTCCTTGTAGTTGG	0.592													39	68					0	0	0.007835	0	0
KLK5	25818	broad.mit.edu	37	19	51453277	51453277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51453277C>T	uc002pue.2	-	4	387	c.169G>A	c.(169-171)GAC>AAC	p.D57N	KLK5_uc002puf.2_Missense_Mutation_p.D57N|KLK5_uc002pug.2_Missense_Mutation_p.D57N	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	57					epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		GACCGGGCGTCTTCCCCGGCC	0.622													10	36					0	0	0.008291	0	0
KLK8	11202	broad.mit.edu	37	19	51503822	51503822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51503822C>T	uc002pur.1	-	3	267	c.88G>A	c.(88-90)GAG>AAG	p.E30K	KLK9_uc002puw.1_RNA|KLK8_uc002puq.1_Missense_Mutation_p.E75K|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Missense_Mutation_p.E30K|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	30					cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		ACCTTGTCCTCCTGTGCCCTG	0.632													40	62					0	0	0.027894	0	0
KLK10	5655	broad.mit.edu	37	19	51520527	51520527	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51520527G>A	uc002puy.2	-	3	189	c.108C>T	c.(106-108)CTC>CTT	p.L36L	KLK10_uc002puz.2_Silent_p.L36L|KLK10_uc002pva.2_Silent_p.L36L	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	36					cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		CGTTTTGGGGGAGCAGCGCCG	0.667											OREG0025646	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	21					0	0	0.004990	0	0
KLK14	43847	broad.mit.edu	37	19	51582952	51582952	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51582952G>A	uc002pvs.1	-	5	487	c.268C>T	c.(268-270)CAG>TAG	p.Q90*		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	90	Peptidase S1.				epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		AGGGCAACCTGAAGGATCCTG	0.662													3	9					0	0	0.004672	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645725	51645725	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51645725C>T	uc002pvv.1	+	1	168	c.99C>T	c.(97-99)TCC>TCT	p.S33S	SIGLEC7_uc002pvw.1_Silent_p.S33S|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Silent_p.S33S	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	33	Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		TGCAGAGTTCCGTGACCGTGC	0.488													29	52					0	0	0.007291	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920720	51920720	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:51920720C>T	uc002pwo.2	-	2	654	c.38_splice	c.e2-1	p.G13_splice	SIGLEC10_uc002pwp.2_Splice_Site_p.G13_splice|SIGLEC10_uc002pwq.2_Splice_Site_p.G13_splice|SIGLEC10_uc002pwr.2_Splice_Site_p.G13_splice|SIGLEC10_uc010ycy.1_Splice_Site_p.G13_splice|SIGLEC10_uc010ycz.1_Splice_Site_p.G13_splice|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Splice_Site	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor						cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GCCTGGGACCCTGTGGGGAGA	0.637													39	67					0	0	0.008740	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001351	52001352	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:52001351_52001352CC>TT	uc002pwx.1	-	5	1381_1382	c.1325_1326GG>AA	c.(1324-1326)GGG>GAA	p.G442E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G324E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G169E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	442	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		AGGTGAATTCCCCTTCATCCTT	0.614													22	42					0	0	0.004672	0	0
ZNF841	284371	broad.mit.edu	37	19	52569368	52569368	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:52569368T>C	uc002pyl.1	-	5	1971	c.1419A>G	c.(1417-1419)AGA>AGG	p.R473R	ZNF841_uc010ydh.1_Silent_p.R589R|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	473	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGGTATGCATTCTTTGATGAC	0.413													56	64					0	0	0.014410	0	0
ZNF321	399669	broad.mit.edu	37	19	53432467	53432467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:53432467C>T	uc010eqj.2	-	4	513	c.343G>A	c.(343-345)GAA>AAA	p.E115K	ZNF321_uc002qaj.1_Missense_Mutation_p.E62K|ZNF321_uc002qak.1_Missense_Mutation_p.E115K	NM_203307	NP_976052			zinc finger protein 321												0				GBM - Glioblastoma multiforme(134;0.0305)		TCTTTGATTTCTGTCATGGGT	0.408													132	201					0	0	0.014410	0	0
ZNF845	91664	broad.mit.edu	37	19	53855283	53855283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:53855283C>T	uc010ydv.1	+	4	1472	c.1355C>T	c.(1354-1356)TCG>TTG	p.S452L	ZNF845_uc010ydw.1_Missense_Mutation_p.S452L	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	452	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTTTCAAATCGAACCTTGAA	0.393													40	44					0	0	0.023175	0	0
ZNF331	55422	broad.mit.edu	37	19	54080355	54080355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:54080355C>T	uc002qbx.1	+	7	1975	c.541C>T	c.(541-543)CAT>TAT	p.H181Y	ZNF331_uc002qby.1_Missense_Mutation_p.H181Y|ZNF331_uc002qbz.1_Missense_Mutation_p.H181Y|ZNF331_uc002qca.1_Missense_Mutation_p.H181Y|ZNF331_uc010eqr.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcb.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcc.1_Missense_Mutation_p.H181Y|ZNF331_uc002qcd.1_Missense_Mutation_p.H181Y	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	181	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCAAAAAATTCATACTGGGGA	0.418			T	?	follicular thyroid adenoma								59	87					0	0	0.014410	0	0
DPRX	503834	broad.mit.edu	37	19	54137908	54137908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:54137908C>T	uc002qcf.1	+	2	203	c.152C>T	c.(151-153)TCG>TTG	p.S51L		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	51	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		GAAATGGCCTCGAAAATAGAC	0.433													55	66					0	0	0.014410	0	0
MIR520B	574473	broad.mit.edu	37	19	54204530	54204530	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:54204530C>T	hsa-mir-520b|MI0003155	+			c.50C>T			MIR518B_hsa-mir-518b|MI0003156_5'Flank																	0						GAAAGTGCTTCCTTTTAGAGG	0.428													19	33					0	0	0.007413	0	0
NLRP12	91662	broad.mit.edu	37	19	54307284	54307284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:54307284C>T	uc002qch.3	-	6	2727	c.2507G>A	c.(2506-2508)GGA>GAA	p.G836E	NLRP12_uc010eqw.2_Missense_Mutation_p.G119E|NLRP12_uc002qci.3_Missense_Mutation_p.G836E|NLRP12_uc002qcj.3_Missense_Mutation_p.G837E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G837E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	836	LRR 1.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAGTGCATTTCCTGTCAGGTC	0.562													32	34					0	0	0.008361	0	0
PRKCG	5582	broad.mit.edu	37	19	54403497	54403497	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:54403497A>T	uc002qcq.1	+	12	1574	c.1292A>T	c.(1291-1293)TAT>TTT	p.Y431F	PRKCG_uc010yeg.1_Missense_Mutation_p.Y431F|PRKCG_uc010yeh.1_Missense_Mutation_p.Y318F	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	431	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GACCGCCTGTATTTCGTGATG	0.542													38	49					0	0	0.008740	0	0
LILRA2	11027	broad.mit.edu	37	19	55098721	55098721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:55098721G>A	uc002qgg.3	+	8	1449	c.1360G>A	c.(1360-1362)GGT>AGT	p.G454S	LILRA2_uc010ern.2_3'UTR|LILRA2_uc002qgf.2_Missense_Mutation_p.G437S|LILRA2_uc010ero.2_Missense_Mutation_p.G425S|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	454	Helical; (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CATCCGCATGGGTGTGGCTGG	0.577													37	56					0	0	0.025465	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286728	55286728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:55286728C>T	uc002qhb.1	+	4	520	c.482C>T	c.(481-483)TCC>TTC	p.S161F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.S161F	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	161	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TACCATCTATCCAGGGAAGGG	0.607													77	146					0	0	0.014410	0	0
NCR1	9437	broad.mit.edu	37	19	55417935	55417935	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:55417935A>G	uc002qib.2	+	3	163	c.125A>G	c.(124-126)GAA>GGA	p.E42G	NCR1_uc002qic.2_Missense_Mutation_p.E42G|NCR1_uc002qie.2_Missense_Mutation_p.E42G|NCR1_uc002qid.2_Intron|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Intron	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	42	Ig-like 1.|Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		GTTCCAAAGGAAAAGCAAGTG	0.542													63	107					0	0	0.014410	0	0
NLRP11	204801	broad.mit.edu	37	19	56329292	56329292	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56329292C>T	uc010ygf.1	-	4	960	c.249G>A	c.(247-249)AGG>AGA	p.R83R	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	83	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CAATGATCTTCCTACAAAGAT	0.443													50	65					0	0	0.014410	0	0
NLRP4	147945	broad.mit.edu	37	19	56369135	56369135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56369135G>A	uc002qmd.3	+	3	798	c.376G>A	c.(376-378)GAA>AAA	p.E126K	NLRP4_uc002qmf.2_Missense_Mutation_p.E51K|NLRP4_uc010etf.2_5'UTR	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	126							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTTTGAGGAGGAAGTCAAGCA	0.468													58	79					0	0	0.014410	0	0
NLRP4	147945	broad.mit.edu	37	19	56373427	56373427	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56373427G>A	uc002qmd.3	+	5	2510	c.2088G>A	c.(2086-2088)TTG>TTA	p.L696L	NLRP4_uc002qmf.2_Silent_p.L621L|NLRP4_uc010etf.2_Silent_p.L527L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	696							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCCAGACTTGAAATACCTGA	0.443													41	47					0	0	0.007835	0	0
NLRP13	126204	broad.mit.edu	37	19	56424166	56424166	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56424166G>A	uc010ygg.1	-	5	1042	c.1017C>T	c.(1015-1017)CTC>CTT	p.L339L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	339	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGGTCACTGGGAGCTCCTGGT	0.453													37	60					0	0	0.023175	0	0
NLRP5	126206	broad.mit.edu	37	19	56515209	56515209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56515209G>A	uc002qmj.2	+	2	190	c.190G>A	c.(190-192)GGG>AGG	p.G64R	NLRP5_uc002qmi.2_Missense_Mutation_p.G64R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	64	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TTCCAGCTACGGGCTGCAATG	0.423													50	91					0	0	0.014410	0	0
NLRP5	126206	broad.mit.edu	37	19	56539137	56539137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56539137G>A	uc002qmj.2	+	7	1538	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q	NLRP5_uc002qmi.2_Missense_Mutation_p.R494Q	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	513	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTCACCCCTCGAGGCGTGGTC	0.597													18	21					0	0	0.016522	0	0
ZNF582	147948	broad.mit.edu	37	19	56896435	56896435	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:56896435A>T	uc002qmz.1	-	5	510	c.351T>A	c.(349-351)AGT>AGA	p.S117R	ZNF582_uc002qmy.2_Missense_Mutation_p.S148R	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		CATCTTGGAAACTTGAACACT	0.403													55	80					0	0	0.014410	0	0
PEG3	5178	broad.mit.edu	37	19	57326831	57326831	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:57326831C>T	uc002qnu.2	-	7	3330	c.2979G>A	c.(2977-2979)AGG>AGA	p.R993R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.R964R|PEG3_uc002qnv.2_Silent_p.R993R|PEG3_uc002qnw.2_Silent_p.R869R|PEG3_uc002qnx.2_Silent_p.R867R|PEG3_uc010etr.2_Silent_p.R993R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	993					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AGGGCTTCTCCCTATCATGAA	0.498													26	36					0	0	0.024334	0	0
ZIM3	114026	broad.mit.edu	37	19	57646651	57646651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:57646651C>T	uc002qnz.1	-	5	1440	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	352	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTCTCATGATCGATGACATTG	0.383													83	114					0	0	0.014410	0	0
ZNF418	147686	broad.mit.edu	37	19	58438668	58438668	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:58438668G>T	uc002qqs.1	-	4	1173	c.881C>A	c.(880-882)TCT>TAT	p.S294Y	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.S209Y	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	294	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		ATGACTAAAAGATTTCCCACA	0.428													76	141					4.8811e-34	4.98747e-34	0.014410	1	0
ZSCAN1	284312	broad.mit.edu	37	19	58564883	58564883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:58564883G>A	uc002qrc.1	+	6	938	c.691G>A	c.(691-693)GAA>AAA	p.E231K		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	231					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCTGCGGGCAGAAGGGACTGT	0.642													35	61					0	0	0.013726	0	0
ZNF135	7694	broad.mit.edu	37	19	58579314	58579314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:58579314C>T	uc010yhq.1	+	5	1594	c.1498C>T	c.(1498-1500)CAC>TAC	p.H500Y	ZNF135_uc002qre.2_Missense_Mutation_p.H488Y|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Missense_Mutation_p.H446Y|ZNF135_uc002qrg.2_Missense_Mutation_p.H458Y|ZNF135_uc010yhr.1_Missense_Mutation_p.H309Y	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	500					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		CCAGCGAATCCACACAGGGGA	0.572													15	43					0	0	0.024245	0	0
ZNF8	7554	broad.mit.edu	37	19	58806335	58806335	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:58806335C>T	uc002qry.1	+	4	1291	c.1161C>T	c.(1159-1161)CAC>CAT	p.H387H	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	387	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		TTTTCCTGCACCTGAGAACTC	0.612													49	59					0	0	0.014410	0	0
ASAP2	8853	broad.mit.edu	37	2	9463340	9463340	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:9463340G>T	uc002qzh.2	+	6	901	c.561G>T	c.(559-561)ATG>ATT	p.M187I	ASAP2_uc002qzi.2_Missense_Mutation_p.M187I	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	187					regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						CCGAAGAGATGGAAAAGGAGA	0.537													79	189					1.26005e-42	1.2887e-42	0.014410	1	0
ATP6V1C2	245973	broad.mit.edu	37	2	10912037	10912037	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:10912037C>T	uc002ras.2	+	7	652	c.543C>T	c.(541-543)CTC>CTT	p.L181L	ATP6V1C2_uc002rat.2_Silent_p.L181L	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	181					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		CTGAATATCTCGTCACACTTC	0.552													33	263					0	0	0.015359	0	0
PQLC3	130814	broad.mit.edu	37	2	11300786	11300786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:11300786G>A	uc002rbc.2	+	3	395	c.262G>A	c.(262-264)GGG>AGG	p.G88R	PQLC3_uc010yjk.1_Missense_Mutation_p.G88R	NM_152391	NP_689604	Q8N755	PQLC3_HUMAN	PQ loop repeat containing 3 precursor	88						integral to membrane					0	all_hematologic(175;0.0797)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.0978)|OV - Ovarian serous cystadenocarcinoma(76;0.132)		TCATTTTAACGGGAACGTGAA	0.517													31	225					0	0	0.017118	0	0
GREB1	9687	broad.mit.edu	37	2	11770145	11770145	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:11770145C>T	uc002rbk.1	+	26	4821	c.4521C>T	c.(4519-4521)TTC>TTT	p.F1507F	GREB1_uc002rbp.1_Silent_p.F505F	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1507						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		AGCTGCACTTCATCATCCCCA	0.567													64	135					0	0	0.014410	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17696505	17696505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:17696505C>T	uc002rcl.1	-	1	3202	c.3178G>A	c.(3178-3180)GAA>AAA	p.E1060K	RAD51AP2_uc010exn.1_Missense_Mutation_p.E1051K	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1060										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTAGGAACTTCCTGTTCTCCA	0.348													15	28					0	0	0.020292	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697550	17697550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:17697550C>T	uc002rcl.1	-	1	2157	c.2133G>A	c.(2131-2133)ATG>ATA	p.M711I	RAD51AP2_uc010exn.1_Missense_Mutation_p.M702I	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	711										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAGGACAACTCATATTCTGAC	0.313													16	117					0	0	0.006122	0	0
WDR35	57539	broad.mit.edu	37	2	20169255	20169255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:20169255G>A	uc002rdi.2	-	9	1102	c.994C>T	c.(994-996)CGA>TGA	p.R332*	WDR35_uc002rdj.2_Nonsense_Mutation_p.R332*|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_5'UTR	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	332										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAATTAGGTCGAATGTTTGCA	0.318													17	32					0	0	0.028581	0	0
APOB	338	broad.mit.edu	37	2	21229889	21229889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:21229889G>A	uc002red.2	-	26	9979	c.9851C>T	c.(9850-9852)TCC>TTC	p.S3284F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3284					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACCTAGGATGGAGAAACTAGG	0.458													49	59					0	0	0.014410	0	0
TP53I3	9540	broad.mit.edu	37	2	24305773	24305773	+	Nonsense_Mutation	SNP	G	A	A	rs143715832	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:24305773G>A	uc002rey.1	-	3	448	c.388C>T	c.(388-390)CAG>TAG	p.Q130*	LOC375190_uc002rew.2_Intron|TP53I3_uc002rex.1_Nonsense_Mutation_p.Q130*|TP53I3_uc002rez.1_Nonsense_Mutation_p.Q130*|TP53I3_uc010ykk.1_Intron	NM_147184	NP_671713	Q53FA7	QORX_HUMAN	tumor protein p53 inducible protein 3	130					induction of apoptosis by oxidative stress|NADP metabolic process		NADPH binding|NADPH:quinone reductase activity|protein homodimerization activity|quinone binding|zinc ion binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTAACAGCTGGAAGGCGGTG	0.572													14	26					0	0	0.028581	0	0
C2orf84	653140	broad.mit.edu	37	2	24406459	24406459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:24406459C>T	uc002rfc.2	+	5	432	c.346C>T	c.(346-348)CCA>TCA	p.P116S	C2orf84_uc010eyc.2_RNA	NM_001040710	NP_001035800	Q86W67	CB084_HUMAN	hypothetical protein LOC653140	116											0						CTGTGTGATTCCAAAAGAGTG	0.408													26	26					0	0	0.006320	0	0
GPR113	165082	broad.mit.edu	37	2	26533851	26533851	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:26533851C>T	uc002rhe.3	-	11	2745	c.2745G>A	c.(2743-2745)GGG>GGA	p.G915G	GPR113_uc010yky.1_Silent_p.G846G|GPR113_uc002rhb.1_Silent_p.G518G|GPR113_uc010eyk.1_Silent_p.G716G|GPR113_uc002rhc.1_Silent_p.G518G|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	915	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCAGCATTCCCCCTCCCTCA	0.612													14	24					0	0	0.024245	0	0
GPR113	165082	broad.mit.edu	37	2	26537355	26537355	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:26537355G>A	uc002rhe.3	-	7	1059	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	GPR113_uc010yky.1_Silent_p.F284F|GPR113_uc002rhb.1_5'UTR|GPR113_uc010eyk.1_Silent_p.F154F|GPR113_uc002rhc.1_Intron|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	353	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCTCAGCTGGAAGCCAGGGG	0.617													38	61					0	0	0.014410	0	0
OTOF	9381	broad.mit.edu	37	2	26703149	26703149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:26703149G>A	uc002rhk.2	-	16	1961	c.1834C>T	c.(1834-1836)CTC>TTC	p.L612F	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	612	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTCCAAAGAGAAAGAATTCT	0.572													55	65					0	0	0.014410	0	0
C2orf16	84226	broad.mit.edu	37	2	27802154	27802154	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:27802154G>A	uc002rkz.3	+	1	2766	c.2715G>A	c.(2713-2715)AGG>AGA	p.R905R		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	905										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTATGGAAAGGAAGCTTTGTT	0.428													58	81					0	0	0.014410	0	0
C2orf71	388939	broad.mit.edu	37	2	29295898	29295898	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:29295898C>T	uc002rmt.1	-	1	1230	c.1230G>A	c.(1228-1230)CAG>CAA	p.Q410Q		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	410					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GCAGGCAGTCCTGGGGTCTGC	0.572													50	126					0	0	0.014410	0	0
ALK	238	broad.mit.edu	37	2	29543705	29543705	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:29543705G>A	uc002rmy.2	-	7	2365	c.1458C>T	c.(1456-1458)TTC>TTT	p.F486F		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	486	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TCCAGCCACAGAAGCCATCTT	0.522			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				58	159					0	0	0.014410	0	0
LCLAT1	253558	broad.mit.edu	37	2	30863146	30863146	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:30863146C>T	uc002rnj.2	+	7	1115	c.906C>T	c.(904-906)CTC>CTT	p.L302L	LCLAT1_uc010ymp.1_Silent_p.L140L|LCLAT1_uc002rnl.2_Silent_p.L264L|LCLAT1_uc010ymq.1_Silent_p.L264L	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	302					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						ACCTTCAACTCTGGTGCCACA	0.498													49	89					0	0	0.014410	0	0
CAPN13	92291	broad.mit.edu	37	2	30961278	30961278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:30961278C>T	uc002rnn.2	-	15	1758	c.1582G>A	c.(1582-1584)GAG>AAG	p.E528K	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	528					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GTTAGAAGCTCCTGGTTGAGA	0.557													5	18					0	0	0.014758	0	0
CAPN13	92291	broad.mit.edu	37	2	30973992	30973992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:30973992G>A	uc002rnn.2	-	11	1389	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S	CAPN13_uc002rnp.1_Missense_Mutation_p.P405S	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	405					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AAATCGAGTGGAAATTTTGCA	0.463													17	35					0	0	0.004990	0	0
GALNT14	79623	broad.mit.edu	37	2	31165110	31165110	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:31165110C>T	uc002rnr.2	-	9	1507	c.888G>A	c.(886-888)GGG>GGA	p.G296G	GALNT14_uc002rnq.2_Silent_p.G276G|GALNT14_uc002rns.2_Silent_p.G301G|GALNT14_uc010ymr.1_Silent_p.G261G|GALNT14_uc010ezo.1_Silent_p.G263G|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	296	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TATCATATTTCCCCAGGTAAT	0.493													38	107					0	0	0.007835	0	0
GALNT14	79623	broad.mit.edu	37	2	31178546	31178546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:31178546G>A	uc002rnr.2	-	6	1211	c.592C>T	c.(592-594)CTC>TTC	p.L198F	GALNT14_uc002rnq.2_Missense_Mutation_p.L178F|GALNT14_uc002rns.2_Missense_Mutation_p.L203F|GALNT14_uc010ymr.1_Missense_Mutation_p.L163F|GALNT14_uc010ezo.1_Missense_Mutation_p.L165F|GALNT14_uc010ezp.1_Missense_Mutation_p.L169F	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	198	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TGGCTGTCGAGGAAAGTCAGA	0.627													29	78					0	0	0.006320	0	0
XDH	7498	broad.mit.edu	37	2	31562522	31562522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:31562522C>T	uc002rnv.1	-	34	3686	c.3607G>A	c.(3607-3609)GGC>AGC	p.G1203S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1203					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGGCCAAGGCCCTGGACAAAT	0.577													13	48					0	0	0.013537	0	0
LTBP1	4052	broad.mit.edu	37	2	33246227	33246227	+	Missense_Mutation	SNP	C	T	T	rs142311728		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:33246227C>T	uc002ros.2	+	3	817	c.817C>T	c.(817-819)CTC>TTC	p.L273F		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	273					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GACCTTAACCCTCAAGCCGAA	0.493													45	113					0	0	0.014410	0	0
LTBP1	4052	broad.mit.edu	37	2	33335750	33335750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:33335750G>A	uc002ros.2	+	4	965	c.965G>A	c.(964-966)GGA>GAA	p.G322E		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	322					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGGATTTCAGGAGAGCAGTCC	0.488													53	124					0	0	0.014410	0	0
LTBP1	4052	broad.mit.edu	37	2	33622247	33622247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:33622247C>T	uc002ros.2	+	33	4885	c.4885C>T	c.(4885-4887)CTC>TTC	p.L1629F	LTBP1_uc002rot.2_Missense_Mutation_p.L1303F|LTBP1_uc002rou.2_Missense_Mutation_p.L1302F|LTBP1_uc002rov.2_Missense_Mutation_p.L1249F|LTBP1_uc010ymz.1_Missense_Mutation_p.L1260F|LTBP1_uc010yna.1_Missense_Mutation_p.L1207F|LTBP1_uc010ynb.1_Missense_Mutation_p.L526F	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1628	EGF-like 17.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				ATGCGGCATCCTCAATGGATG	0.463													20	43					0	0	0.010504	0	0
SULT6B1	391365	broad.mit.edu	37	2	37406707	37406707	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:37406707G>A	uc002rpu.2	-	4	330	c.309C>T	c.(307-309)AAC>AAT	p.N103N	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	141	PAPS (By similarity).					cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TATCTTTAGGGTTTCGAAATA	0.353													41	120					0	0	0.013114	0	0
CEBPZ	10153	broad.mit.edu	37	2	37443540	37443540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:37443540C>T	uc002rpz.2	-	7	2260	c.2230G>A	c.(2230-2232)GGG>AGG	p.G744R		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	744					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				AGTGGGTCCCCTGAATACTGA	0.358													55	143					0	0	0.014410	0	0
ATL2	64225	broad.mit.edu	37	2	38536592	38536592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:38536592G>A	uc002rqq.2	-	9	1030	c.1000C>T	c.(1000-1002)CCT>TCT	p.P334S	ATL2_uc010ynm.1_Missense_Mutation_p.P316S|ATL2_uc010ynn.1_Missense_Mutation_p.P316S|ATL2_uc010yno.1_Missense_Mutation_p.P163S|ATL2_uc002rqs.2_Missense_Mutation_p.P334S|ATL2_uc002rqr.2_Missense_Mutation_p.P163S	NM_001135673	NP_001129145	Q8NHH9	ATLA2_HUMAN	atlastin GTPase 2 isoform 2	334	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			ovary(1)|kidney(1)|skin(1)	3						AAATTTTCAGGGGCAAGCAGC	0.328													43	88					0	0	0.014410	0	0
SOS1	6654	broad.mit.edu	37	2	39249723	39249723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:39249723G>A	uc002rrk.3	-	10	1887	c.1846C>T	c.(1846-1848)CAT>TAT	p.H616Y	SOS1_uc010ynr.1_RNA|SOS1_uc002rrj.3_Missense_Mutation_p.H230Y|SOS1_uc002rrl.2_Missense_Mutation_p.H348Y	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	616	N-terminal Ras-GEF.				apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				GCGTACATATGGTACGTAAGC	0.368									Noonan_syndrome				17	26					0	0	0.006122	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366725	40366725	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:40366725G>A	uc002rrx.2	-	9	2385	c.2361C>T	c.(2359-2361)GTC>GTT	p.V787V	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.V782V|SLC8A1_uc002rrz.2_Silent_p.V774V|SLC8A1_uc002rsa.2_Silent_p.V751V|SLC8A1_uc002rsd.3_Silent_p.V751V	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	787	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AGGCAAACAGGACCTTCCAGA	0.502													30	65					0	0	0.008361	0	0
SRBD1	55133	broad.mit.edu	37	2	45829063	45829063	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:45829063G>A	uc002rus.2	-	3	316	c.240C>T	c.(238-240)GTC>GTT	p.V80V		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	80	Poly-Val.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			TAACAACAACGACTTCTGAGC	0.483													59	219					0	0	0.014410	0	0
SRBD1	55133	broad.mit.edu	37	2	45829070	45829070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:45829070G>A	uc002rus.2	-	3	309	c.233C>T	c.(232-234)TCA>TTA	p.S78L		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	78					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AACGACTTCTGAGCCATCACT	0.478													62	217					0	0	0.014410	0	0
SOCS5	9655	broad.mit.edu	37	2	46987134	46987134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:46987134C>T	uc002rvf.2	+	2	1629	c.1465C>T	c.(1465-1467)CGC>TGC	p.R489C	SOCS5_uc010yoe.1_Missense_Mutation_p.R458C|SOCS5_uc002rvg.2_Missense_Mutation_p.R489C	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	489	SOCS box.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			GTATATCTGTCGCGCGGTAAT	0.373													23	65					0	0	0.016522	0	0
MSH2	4436	broad.mit.edu	37	2	47703666	47703666	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:47703666C>T	uc002rvy.1	+	13	2234	c.2166C>T	c.(2164-2166)GTC>GTT	p.V722V	MSH2_uc010yoh.1_Silent_p.V656V|MSH2_uc002rvz.2_Silent_p.V722V|MSH2_uc010fbg.2_Silent_p.V532V	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	722					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGAAAGGAGTCTCCACGTTCA	0.473			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				33	109					0	0	0.019004	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818851	48818851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:48818851C>T	uc010yol.1	+	2	2037	c.1990C>T	c.(1990-1992)CCC>TCC	p.P664S	STON1_uc002rwo.3_Missense_Mutation_p.P664S|STON1_uc010fbm.2_Missense_Mutation_p.P664S|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P664S|STON1_uc002rwr.2_Intron|STON1_uc002rwq.2_Missense_Mutation_p.P664S	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	664					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CCAAGAAATTCCCTCTGATTG	0.438													45	120					0	0	0.014410	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48898789	48898790	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:48898789_48898790GG>AA	uc010yol.1	+	7	3317_3318	c.3270_3271GG>AA	c.(3268-3273)ACGGAT>ACAAAT	p.D1091N	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.D1138N|GTF2A1L_uc002rws.1_Missense_Mutation_p.D434N|GTF2A1L_uc010yom.1_Missense_Mutation_p.D400N|GTF2A1L_uc002rwt.2_Missense_Mutation_p.D434N	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1091					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGTTTGACACGGATAATGTTAT	0.351													27	129					0	0	0.004672	0	0
LHCGR	3973	broad.mit.edu	37	2	48936102	48936103	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:48936102_48936103GT>AG	uc002rwu.3	-	8	734_735	c.664_665AC>CT	c.(664-666)ACA>CTA	p.T222L	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	222	Extracellular (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TTTCGGCCCTGTGGCCCCACGG	0.55									Familial_Male-Limited_Precocious_Puberty				39	127					0	0	0.004672	0	0
VRK2	7444	broad.mit.edu	37	2	58350302	58350302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:58350302G>A	uc002rzo.2	+	11	1355	c.610G>A	c.(610-612)GAA>AAA	p.E204K	VRK2_uc010fcb.2_Missense_Mutation_p.E204K|VRK2_uc002rzs.2_Missense_Mutation_p.E204K|VRK2_uc002rzr.2_Missense_Mutation_p.E204K|VRK2_uc010fcc.2_Missense_Mutation_p.E86K|VRK2_uc002rzv.2_Missense_Mutation_p.E204K|VRK2_uc010fcd.2_Missense_Mutation_p.E181K|VRK2_uc002rzp.2_Missense_Mutation_p.E204K|VRK2_uc010ypg.1_Missense_Mutation_p.E204K|VRK2_uc002rzq.2_Missense_Mutation_p.E204K|VRK2_uc002rzu.2_Missense_Mutation_p.E204K|VRK2_uc002rzt.2_Missense_Mutation_p.E86K|VRK2_uc010yph.1_Missense_Mutation_p.E86K	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	204	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						ACAGTATCAGGAAAATCCTAG	0.383													34	71					0	0	0.019004	0	0
MEIS1	4211	broad.mit.edu	37	2	66667712	66667712	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:66667712C>T	uc002sdu.2	+	4	857	c.400C>T	c.(400-402)CTA>TTA	p.L134L	MEIS1_uc002sdt.2_Silent_p.L134L|MEIS1_uc002sdv.2_Silent_p.L132L|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Silent_p.L69L|MEIS1_uc002sdw.1_5'UTR	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	134							sequence-specific DNA binding transcription factor activity				0						AGAAAAACCTCTATTTTCTTC	0.502													16	48					0	0	0.008871	0	0
ETAA1	54465	broad.mit.edu	37	2	67631707	67631707	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:67631707G>A	uc002sdz.1	+	5	2032	c.1893G>A	c.(1891-1893)AAG>AAA	p.K631K		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	631						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						AGGACAGTAAGACATCAGAAA	0.363													52	155					0	0	0.014410	0	0
PLEK	5341	broad.mit.edu	37	2	68607869	68607869	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:68607869C>T	uc002sen.3	+	3	375	c.213C>T	c.(211-213)ATC>ATT	p.I71I	PLEK_uc010fde.2_Silent_p.I71I	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	71	PH 1.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		TGTTTAAGATCACTACGACCA	0.473													51	124					0	0	0.014410	0	0
BMP10	27302	broad.mit.edu	37	2	69098400	69098400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:69098400G>A	uc002sez.1	-	1	250	c.91C>T	c.(91-93)CCT>TCT	p.P31S		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	31					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TCTTCCAGAGGAGACTGCTCT	0.502													19	57					0	0	0.006122	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71360430	71360430	+	Silent	SNP	C	T	T	rs148255112		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:71360430C>T	uc002sht.1	+	2	844	c.492C>T	c.(490-492)CCC>CCT	p.P164P	MPHOSPH10_uc010feb.1_Silent_p.P164P	NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	164					RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						GGAAAAGCCCCGTTTTCAGTG	0.433													61	165					0	0	0.014410	0	0
DYSF	8291	broad.mit.edu	37	2	71778790	71778790	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:71778790G>A	uc002sie.2	+	19	2068	c.1692G>A	c.(1690-1692)CTG>CTA	p.L564L	DYSF_uc010feg.2_Silent_p.L595L|DYSF_uc010feh.2_Silent_p.L550L|DYSF_uc002sig.3_Silent_p.L550L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.L564L|DYSF_uc010fef.2_Silent_p.L581L|DYSF_uc010fei.2_Silent_p.L581L|DYSF_uc010fek.2_Silent_p.L582L|DYSF_uc010fej.2_Silent_p.L551L|DYSF_uc010fel.2_Silent_p.L551L|DYSF_uc010feo.2_Silent_p.L596L|DYSF_uc010fem.2_Silent_p.L565L|DYSF_uc010fen.2_Silent_p.L582L|DYSF_uc002sif.2_Silent_p.L565L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	564	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGACCAAGCTGGTGGAGCACA	0.652													14	62					0	0	0.010504	0	0
C2orf65	130951	broad.mit.edu	37	2	74808912	74808912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:74808912C>T	uc002smy.2	-	5	775	c.658G>A	c.(658-660)GAG>AAG	p.E220K	C2orf65_uc010ysa.1_Missense_Mutation_p.E220K|C2orf65_uc002smz.2_Missense_Mutation_p.E220K	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	220					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						AAGAAAATCTCCATGCTGACG	0.398													59	124					0	0	0.014410	0	0
SEMA4F	10505	broad.mit.edu	37	2	74906751	74906751	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:74906751C>T	uc002sna.1	+	14	1839	c.1728C>T	c.(1726-1728)CCC>CCT	p.P576P	SEMA4F_uc010ffr.1_Silent_p.P188P|SEMA4F_uc002snb.1_Silent_p.P188P|SEMA4F_uc002snc.1_Silent_p.P421P	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	576	Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TTGAAGTTCCCGTGGCTACAG	0.547													184	441					0	0	0.014410	0	0
TACR1	6869	broad.mit.edu	37	2	75425980	75425980	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:75425980T>C	uc002sng.2	-	1	666	c.81A>G	c.(79-81)CAA>CAG	p.Q27Q	TACR1_uc002snh.2_Silent_p.Q27Q	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	27	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	GCCAGGCTGGTTGCACGAACT	0.537													31	51					0	0	0.009535	0	0
RETSAT	54884	broad.mit.edu	37	2	85571139	85571139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:85571139G>A	uc002spd.2	-	9	1707	c.1516C>T	c.(1516-1518)CCA>TCA	p.P506S	RETSAT_uc010fge.2_Intron|RETSAT_uc010ysm.1_Missense_Mutation_p.P445S|RETSAT_uc010fgf.2_Missense_Mutation_p.P297S	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	506					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	TCCAGCTGTGGGAACAGTTTC	0.552													119	250					0	0	0.014410	0	0
SFTPB	6439	broad.mit.edu	37	2	85894911	85894911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:85894911G>A	uc002sqh.2	-	2	92	c.86C>T	c.(85-87)TCC>TTC	p.S29F	SFTPB_uc002sqi.2_Missense_Mutation_p.S41F|SFTPB_uc002sqj.2_Missense_Mutation_p.S29F	NM_198843	NP_942140	P07988	PSPB_HUMAN	surfactant, pulmonary-associated protein B	29	Saposin A-type.				organ morphogenesis|respiratory gaseous exchange|sphingolipid metabolic process	extracellular space|lysosome				ovary(1)|central_nervous_system(1)	2						ACAGGCCAAGGATGAGGTGGT	0.577													33	111					0	0	0.012213	0	0
SMYD1	150572	broad.mit.edu	37	2	88410017	88410017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:88410017C>T	uc002ssr.2	+	10	1461	c.1459C>T	c.(1459-1461)CAC>TAC	p.H487Y	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.H183Y	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGCTCTGTTCCACAAGAAGCA	0.592													5	11					0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	2	90078102	90078102	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:90078102C>T	uc010fhm.2	+	14		c.1492C>T								Parts of antibodies, mostly variable regions.																		CGGGGCCAGTCAGAGTGTTAG	0.582													44	40					0	0	0.008740	0	0
Unknown	0	broad.mit.edu	37	2	90078157	90078157	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:90078157C>T	uc010fhm.2	+	14		c.1547C>T								Parts of antibodies, mostly variable regions.																		GGCCTGGCGCCCAGGCTCCTC	0.587													47	37					0	0	0.013114	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95481214	95481214	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:95481214G>A	uc010fhq.1	-	2	1166	c.774C>T	c.(772-774)TTC>TTT	p.F258F	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TTGTCTTACGGAACTTATCTT	0.323													22	55					0	0	0.018920	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95513821	95513821	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:95513821G>A	uc010fhp.2	-	5		c.584C>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TGTCTTGAGCGAAGACATCAA	0.353													31	773					0	0	0.014410	0	0
TEKT4	150483	broad.mit.edu	37	2	95540640	95540641	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:95540640_95540641CC>TT	uc002stw.1	+	4	926_927	c.833_834CC>TT	c.(832-834)TCC>TTT	p.S278F	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	278					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CGCGACACCTCCGAGGACCTGC	0.683													15	21					0	0	0.004672	0	0
PROM2	150696	broad.mit.edu	37	2	95954277	95954277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:95954277C>T	uc002suh.1	+	22	2514	c.2381C>T	c.(2380-2382)CCC>CTC	p.P794L	PROM2_uc002sui.2_Missense_Mutation_p.P794L|PROM2_uc002suj.2_Missense_Mutation_p.P448L|PROM2_uc002suk.2_Missense_Mutation_p.P794L|PROM2_uc002sul.2_Missense_Mutation_p.P320L|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	794	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TTCCTGATCCCCAGCATCATC	0.607													53	165					0	0	0.014410	0	0
ADRA2B	151	broad.mit.edu	37	2	96781134	96781134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:96781134G>A	uc002svi.2	-	1	755	c.755C>T	c.(754-756)TCC>TTC	p.S252F		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	252	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	CTCCCCAGTGGACTTCGAGTG	0.647													15	40					0	0	0.006122	0	0
ADRA2B	151	broad.mit.edu	37	2	96781270	96781270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:96781270G>A	uc002svi.2	-	1	619	c.619C>T	c.(619-621)CCC>TCC	p.P207S		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	207	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	TTGGCCCTGGGACCTCTGCGG	0.627													33	54					0	0	0.015359	0	0
ASTL	431705	broad.mit.edu	37	2	96803358	96803358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:96803358C>T	uc010yui.1	-	2	137	c.137G>A	c.(136-138)GGA>GAA	p.G46E		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	46					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GGCCTGGGTTCCCTCAGGGGT	0.607													85	185					0	0	0.014410	0	0
TMEM127	55654	broad.mit.edu	37	2	96920668	96920668	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:96920668G>A	uc002svq.2	-	3	569	c.312C>T	c.(310-312)ATC>ATT	p.I104I	TMEM127_uc002svr.2_Silent_p.I104I	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	104	Helical; (Potential).				negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						GACTACACAGGATGCCCAGGA	0.542									Pheochromocytoma_(Adrenal)_Familial				53	136					0	0	0.014410	0	0
ITPRIPL1	150771	broad.mit.edu	37	2	96993861	96993861	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:96993861A>G	uc002svx.2	+	3	1827	c.1492A>G	c.(1492-1494)AAT>GAT	p.N498D	ITPRIPL1_uc010yuk.1_Missense_Mutation_p.N490D|ITPRIPL1_uc002svy.2_Missense_Mutation_p.N506D|ITPRIPL1_uc010yul.1_Missense_Mutation_p.N490D	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	498	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						CATTGGTAACAATTTTCTGCC	0.532													77	113					0	0	0.014410	0	0
ARID5A	10865	broad.mit.edu	37	2	97217345	97217346	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:97217345_97217346GG>AA	uc002swe.2	+	7	1180_1181	c.1080_1081GG>AA	c.(1078-1083)AGGGAC>AGAAAC	p.D361N	ARID5A_uc010yuq.1_Missense_Mutation_p.D309N|ARID5A_uc002swf.2_Missense_Mutation_p.D197N|ARID5A_uc002swg.2_Missense_Mutation_p.D309N	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	361					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						AGCACCCCAGGGACTTCTTCTC	0.629													16	33					0	0	0.004672	0	0
CNNM4	26504	broad.mit.edu	37	2	97427280	97427280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:97427280C>T	uc002swx.2	+	1	642	c.544C>T	c.(544-546)CTC>TTC	p.L182F		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	182	Helical; (Potential).				biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane		p.L182V(1)		breast(2)|ovary(1)	3						GTTCCTGCCTCTCTGGCTGCA	0.622													170	386					0	0	0.014410	0	0
MFSD9	84804	broad.mit.edu	37	2	103340268	103340268	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:103340268G>A	uc002tcb.2	-	5	596	c.528C>T	c.(526-528)TCC>TCT	p.S176S	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	176	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						AGCCCACACCGGAGGCTGTGT	0.488													54	107					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108487311	108487311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:108487311G>A	uc010ywk.1	+	20	2933	c.2851G>A	c.(2851-2853)GAT>AAT	p.D951N	RGPD4_uc002tdu.2_Missense_Mutation_p.D138N|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	951					intracellular transport		binding			skin(2)	2						CCAGGCTCAGGATATTAGTGG	0.408													42	121					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108488581	108488581	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:108488581G>A	uc010ywk.1	+	20	4203	c.4121G>A	c.(4120-4122)TGG>TAG	p.W1374*	RGPD4_uc002tdu.2_Nonsense_Mutation_p.W561*|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1374	RanBD1 2.				intracellular transport		binding			skin(2)	2						GTTGGTCAATGGAAAGAAAGG	0.353													77	187					0	0	0.014410	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626878	108626878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:108626878C>T	uc002tdv.2	+	9	1580	c.1304C>T	c.(1303-1305)GCC>GTC	p.A435V	SLC5A7_uc010ywm.1_Missense_Mutation_p.A188V|SLC5A7_uc010fjj.2_Missense_Mutation_p.A435V|SLC5A7_uc010ywn.1_Missense_Mutation_p.A322V	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	435	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	ACCTATGGGGCCGTGGCAGGT	0.488													24	55					0	0	0.027356	0	0
SH3RF3	344558	broad.mit.edu	37	2	110049062	110049062	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:110049062G>A	uc010ywt.1	+	6	1509	c.1509G>A	c.(1507-1509)AAG>AAA	p.K503K		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	503	SH3 3.						zinc ion binding			ovary(1)	1						GCTGGTTCAAGGGGGCGTCTC	0.617													15	27					0	0	0.020292	0	0
ACOXL	55289	broad.mit.edu	37	2	111789230	111789230	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:111789230C>T	uc002tgr.3	+	16	1622	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	ACOXL_uc010fkc.2_Silent_p.F436F|ACOXL_uc010yxk.1_Silent_p.F436F	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	466					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AGGATTTTTTCCATGCCTGGA	0.458													28	70					0	0	0.008361	0	0
ACOXL	55289	broad.mit.edu	37	2	111789261	111789261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:111789261G>A	uc002tgr.3	+	16	1653	c.1429G>A	c.(1429-1431)GCT>ACT	p.A477T	ACOXL_uc010fkc.2_Missense_Mutation_p.A447T|ACOXL_uc010yxk.1_Missense_Mutation_p.A447T	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	477					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						GCACCACGTGGCTTCTCTGTC	0.493													29	63					0	0	0.012213	0	0
MERTK	10461	broad.mit.edu	37	2	112751951	112751951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:112751951G>A	uc002thk.1	+	9	1542	c.1420G>A	c.(1420-1422)GAT>AAT	p.D474N	MERTK_uc002thl.1_Missense_Mutation_p.D298N	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	474	Fibronectin type-III 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GCCCTTCAGTGATCCAGTGAA	0.527													55	110					0	0	0.014410	0	0
CKAP2L	150468	broad.mit.edu	37	2	113509901	113509901	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:113509901G>A	uc002tie.2	-	5	1624	c.1545C>T	c.(1543-1545)CTC>CTT	p.L515L	CKAP2L_uc002tif.2_Silent_p.L104L|CKAP2L_uc010yxp.1_Silent_p.L350L|CKAP2L_uc010yxq.1_Silent_p.L350L	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	515						centrosome					0						TGGACAGTTCGAGTTGTGCTT	0.373													61	180					0	0	0.014410	0	0
IL1F10	84639	broad.mit.edu	37	2	113832845	113832845	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:113832845C>T	uc002tiu.2	+	5	438	c.363C>T	c.(361-363)TTC>TTT	p.F121F	IL1F10_uc002tiv.2_Silent_p.F121F|IL1F10_uc002tiw.2_Silent_p.F113F	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	121						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						CTGGCTGGTTCCTGTGTGGCC	0.592													56	125					0	0	0.014410	0	0
PSD4	23550	broad.mit.edu	37	2	113940513	113940513	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:113940513C>T	uc002tjc.2	+	2	663	c.480C>T	c.(478-480)ATC>ATT	p.I160I	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.I159I|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	160					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GGGCAGGCATCCTGCAGGCCC	0.607													40	129					0	0	0.011902	0	0
PSD4	23550	broad.mit.edu	37	2	113958813	113958813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:113958813G>A	uc002tjc.2	+	17	3175	c.2992G>A	c.(2992-2994)GAG>AAG	p.E998K	PSD4_uc002tjd.2_Missense_Mutation_p.E618K|PSD4_uc002tje.2_Missense_Mutation_p.E968K|PSD4_uc002tjf.2_Missense_Mutation_p.E619K|PSD4_uc002tjg.2_Missense_Mutation_p.E164K|PSD4_uc010yxs.1_Missense_Mutation_p.E228K|PSD4_uc002tjh.2_Missense_Mutation_p.E185K	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	998					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CCTGTGGGAGGAGCAGCTGGG	0.652													111	238					0	0	0.014410	0	0
PAX8	7849	broad.mit.edu	37	2	114004339	114004339	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:114004339G>A	uc010yxt.1	-	3	349	c.183C>T	c.(181-183)ATC>ATT	p.I61I	PAX8_uc010yxu.1_Silent_p.I61I|PAX8_uc010yxv.1_Silent_p.I61I|PAX8_uc002tjm.2_Silent_p.I61I|PAX8_uc002tjn.2_Silent_p.I61I|PAX8_uc010fku.1_Silent_p.I61I|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	61	Paired.				branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						ACCTGCCAAGGATCTTGCTGA	0.622			T	PPARG	follicular thyroid		Thyroid dysgenesis 						41	119					0	0	0.014410	0	0
MIR1302-3	100302128	broad.mit.edu	37	2	114340638	114340638	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:114340638C>T	hsa-mir-1302-3|MI0006364	-			c.36C>T			WASH2P_uc002tka.2_5'Flank|WASH2P_uc002tkb.2_5'Flank																	0						cgaaattattcgttgtttatc	0.109													13	284					0	0	0.016522	0	0
DPP10	57628	broad.mit.edu	37	2	116447276	116447276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:116447276C>T	uc002tla.1	+	6	912	c.455C>T	c.(454-456)TCG>TTG	p.S152L	DPP10_uc002tlb.1_Missense_Mutation_p.S102L|DPP10_uc002tlc.1_Missense_Mutation_p.S148L|DPP10_uc002tle.2_Missense_Mutation_p.S156L|DPP10_uc002tlf.1_Missense_Mutation_p.S145L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	152	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TTTCATTATTCGTATACTGCT	0.264													7	11					0	0	0.003080	0	0
DPP10	57628	broad.mit.edu	37	2	116548728	116548728	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:116548728A>T	uc002tla.1	+	18	2060	c.1603A>T	c.(1603-1605)ATT>TTT	p.I535F	DPP10_uc002tlb.1_Missense_Mutation_p.I485F|DPP10_uc002tlc.1_Missense_Mutation_p.I531F|DPP10_uc002tle.2_Missense_Mutation_p.I539F|DPP10_uc002tlf.1_Missense_Mutation_p.I528F	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	535	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AAAGCCAGAAATTAAAATCCT	0.328													42	86					0	0	0.014410	0	0
DPP10	57628	broad.mit.edu	37	2	116548887	116548887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:116548887C>T	uc002tla.1	+	19	2112	c.1655C>T	c.(1654-1656)CCC>CTC	p.P552L	DPP10_uc002tlb.1_Missense_Mutation_p.P502L|DPP10_uc002tlc.1_Missense_Mutation_p.P548L|DPP10_uc002tle.2_Missense_Mutation_p.P556L|DPP10_uc002tlf.1_Missense_Mutation_p.P545L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	552	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TTGTCCCTTCCCAAAGATTTT	0.289													51	150					0	0	0.014410	0	0
TMEM37	140738	broad.mit.edu	37	2	120194503	120194503	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:120194503C>T	uc002tly.2	+	2	94	c.60C>T	c.(58-60)TCC>TCT	p.S20S		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	20						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						CCCGCCGGTCCTTCTTTGAAT	0.617													39	122					0	0	0.021022	0	0
GLI2	2736	broad.mit.edu	37	2	121746042	121746042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:121746042C>T	uc010flp.2	+	13	2582	c.2552C>T	c.(2551-2553)TCC>TTC	p.S851F	GLI2_uc002tmq.1_Missense_Mutation_p.S523F|GLI2_uc002tmr.1_Missense_Mutation_p.S506F|GLI2_uc002tmt.3_Missense_Mutation_p.S523F|GLI2_uc002tmu.3_Missense_Mutation_p.S506F	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	851	Ser-rich.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AACGCGAGCTCCGCTGACTCC	0.751													9	15					0	0	0.006214	0	0
GLI2	2736	broad.mit.edu	37	2	121748242	121748242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:121748242G>A	uc010flp.2	+	13	4782	c.4752G>A	c.(4750-4752)ATG>ATA	p.M1584I	GLI2_uc002tmq.1_3'UTR|GLI2_uc002tmr.1_3'UTR|GLI2_uc002tmt.3_Missense_Mutation_p.M1256I|GLI2_uc002tmu.3_Missense_Mutation_p.M1239I	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1584					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TCCTGAACATGATGACCTAGA	0.602													45	93					0	0	0.013114	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122038831	122038831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:122038831G>A	uc002tmx.2	-	2	172	c.79C>T	c.(79-81)CCC>TCC	p.P27S	TFCP2L1_uc010flr.2_Missense_Mutation_p.P27S	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	27	Mediate transcriptional repression.				female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					TTGAAGATGGGCAGAGCGAGC	0.637													76	180					0	0	0.014410	0	0
CLASP1	23332	broad.mit.edu	37	2	122125381	122125381	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:122125381G>A	uc002tnc.2	-	34	4059	c.3669C>T	c.(3667-3669)TCC>TCT	p.S1223S	CLASP1_uc010yyv.1_Silent_p.S269S|CLASP1_uc002tmz.2_Silent_p.S308S|CLASP1_uc002tna.2_Silent_p.S269S|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Silent_p.S1164S|CLASP1_uc010yza.1_Silent_p.S1156S|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Silent_p.S59S|CLASP1_uc002tnf.2_Silent_p.S125S	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1223					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CAGTGGCAGGGGAGGCAGCGC	0.577													30	75					0	0	0.010818	0	0
MAP3K2	10746	broad.mit.edu	37	2	128066222	128066222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:128066222G>A	uc002toj.1	-	15	1638	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S		NM_006609	NP_006600	Q9Y2U5	M3K2_HUMAN	mitogen-activated protein kinase kinase kinase	525	Protein kinase.				activation of JUN kinase activity|cellular response to mechanical stimulus	nucleus	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein kinase binding			lung(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0706)		ATCCAGTATGGTGTGCCCGTG	0.488													56	154					0	0	0.014410	0	0
UGGT1	56886	broad.mit.edu	37	2	128918777	128918777	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:128918777C>T	uc002tps.2	+	25	2938	c.2760C>T	c.(2758-2760)ATC>ATT	p.I920I	UGGT1_uc010fme.1_Silent_p.I795I|UGGT1_uc002tpr.2_Silent_p.I896I	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	920					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCGAAAATATCATCTTAAAAA	0.423													48	119					0	0	0.013114	0	0
FAM123C	205147	broad.mit.edu	37	2	131520927	131520927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:131520927G>A	uc002trw.2	+	2	1472	c.1282G>A	c.(1282-1284)GAC>AAC	p.D428N	FAM123C_uc010fmv.2_Missense_Mutation_p.D428N|FAM123C_uc010fms.1_Missense_Mutation_p.D428N|FAM123C_uc010fmt.1_Missense_Mutation_p.D428N|FAM123C_uc010fmu.1_Missense_Mutation_p.D428N	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	428										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCTCTTCCACGACCCCAGCGA	0.637													42	91					0	0	0.007835	0	0
FAM123C	205147	broad.mit.edu	37	2	131521646	131521646	+	Silent	SNP	G	A	A	rs79461100	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:131521646G>A	uc002trw.2	+	2	2191	c.2001G>A	c.(1999-2001)CTG>CTA	p.L667L	FAM123C_uc010fmv.2_Silent_p.L667L|FAM123C_uc010fms.1_Silent_p.L667L|FAM123C_uc010fmt.1_Silent_p.L667L|FAM123C_uc010fmu.1_Silent_p.L667L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	667										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GTGACACTCTGGATGCAGAGC	0.652													13	22					0	0	0.016723	0	0
FAM168B	130074	broad.mit.edu	37	2	131829478	131829478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:131829478G>A	uc002tsd.2	-	3	333	c.104C>T	c.(103-105)CCT>CTT	p.P35L		NM_001009993	NP_001009993	A1KXE4	F168B_HUMAN	hypothetical protein LOC130074	35											0						AGAATAGGCAGGAGCTGCTGC	0.463													39	113					0	0	0.027894	0	0
POTEE	445582	broad.mit.edu	37	2	132021641	132021641	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:132021641C>T	uc002tsn.2	+	15	2665	c.2613C>T	c.(2611-2613)CTC>CTT	p.L871L	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.L471L|POTEE_uc002tsl.2_Silent_p.L453L|POTEE_uc010fmy.1_Silent_p.L335L	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	871	Actin-like.						ATP binding				0						GGAATGCCCTCCCCCATGCCA	0.622													35	100					0	0	0.014410	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540798	133540798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:133540798G>A	uc002ttp.2	-	14	3960	c.3586C>T	c.(3586-3588)CCA>TCA	p.P1196S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1196							protein binding				0						ATGCTTGCTGGATTCTTGGAG	0.493													26	66					0	0	0.021523	0	0
THSD7B	80731	broad.mit.edu	37	2	137814040	137814040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:137814040C>T	uc002tva.1	+	2	97	c.97C>T	c.(97-99)CGG>TGG	p.R33W	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGTCCAGAGTCGGGCAGTGTG	0.498													19	46					0	0	0.014323	0	0
THSD7B	80731	broad.mit.edu	37	2	137814118	137814118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:137814118G>A	uc002tva.1	+	2	175	c.175G>A	c.(175-177)GAA>AAA	p.E59K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCCTCCAAAGGAAAGAAGTTG	0.537													18	51					0	0	0.006122	0	0
THSD7B	80731	broad.mit.edu	37	2	137928362	137928362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:137928362G>A	uc002tva.1	+	6	1484	c.1484G>A	c.(1483-1485)GGG>GAG	p.G495E	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G385E	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGGCCTGCAGGGCATTGCCCT	0.473													11	39					0	0	0.008291	0	0
THSD7B	80731	broad.mit.edu	37	2	138400076	138400076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:138400076G>A	uc002tva.1	+	20	3731	c.3731G>A	c.(3730-3732)CGA>CAA	p.R1244Q	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGCCGGACTCGATTTATCATT	0.498													42	102					0	0	0.014410	0	0
SPOPL	339745	broad.mit.edu	37	2	139326593	139326593	+	Silent	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:139326593A>T	uc002tvh.2	+	11	1522	c.1122A>T	c.(1120-1122)CTA>CTT	p.L374L		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	374						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		TTCGAGCACTAGCATCTGCAC	0.438													108	299					0	0	0.014410	0	0
NXPH2	11249	broad.mit.edu	37	2	139428988	139428988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:139428988C>T	uc002tvi.2	-	2	299	c.299G>A	c.(298-300)AGG>AAG	p.R100K		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	100	III.				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		TACTATTGGCCTCCGTTTAGT	0.448													21	49					0	0	0.008871	0	0
LRP1B	53353	broad.mit.edu	37	2	141110581	141110581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141110581G>A	uc002tvj.1	-	76	12563	c.11591C>T	c.(11590-11592)TCA>TTA	p.S3864L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3864	Extracellular (Potential).|EGF-like 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACATTTATATGATCCTTCCAC	0.343										TSP Lung(27;0.18)			14	48					0	0	0.024245	0	0
LRP1B	53353	broad.mit.edu	37	2	141250219	141250219	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141250219C>T	uc002tvj.1	-	57	10050	c.9078G>A	c.(9076-9078)AGG>AGA	p.R3026R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3026	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGCTAATTTTCCTTATCTCAT	0.353										TSP Lung(27;0.18)			39	93					0	0	0.014410	0	0
LRP1B	53353	broad.mit.edu	37	2	141259393	141259393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141259393G>A	uc002tvj.1	-	55	9685	c.8713C>T	c.(8713-8715)CCC>TCC	p.P2905S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2905	Extracellular (Potential).|LDL-receptor class A 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTCCACTGGGAATGCACCTG	0.383										TSP Lung(27;0.18)			6	46					0	0	0.021553	0	0
LRP1B	53353	broad.mit.edu	37	2	141272273	141272273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141272273C>T	uc002tvj.1	-	51	9190	c.8218G>A	c.(8218-8220)GAT>AAT	p.D2740N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2740	Extracellular (Potential).|LDL-receptor class A 16.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTTCTCCATCACAAATCCAA	0.348										TSP Lung(27;0.18)			31	71					0	0	0.017118	0	0
LRP1B	53353	broad.mit.edu	37	2	141294180	141294180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141294180C>T	uc002tvj.1	-	46	8584	c.7612G>A	c.(7612-7614)GAT>AAT	p.D2538N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2538	Extracellular (Potential).|LDL-receptor class A 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTGATTTATCTTTACAGTGA	0.393										TSP Lung(27;0.18)			21	58					0	0	0.008871	0	0
LRP1B	53353	broad.mit.edu	37	2	141459349	141459349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141459349C>T	uc002tvj.1	-	40	7340	c.6368G>A	c.(6367-6369)AGA>AAA	p.R2123K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2123	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAGGCCGGTTCTCATGGTTAT	0.403										TSP Lung(27;0.18)			18	45					0	0	0.006122	0	0
LRP1B	53353	broad.mit.edu	37	2	141598492	141598492	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:141598492G>A	uc002tvj.1	-	30	6081	c.5109C>T	c.(5107-5109)GTC>GTT	p.V1703V		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1703	Extracellular (Potential).|LDL-receptor class B 15.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTACCCCCTGACTGGGTGAG	0.343										TSP Lung(27;0.18)			21	54					0	0	0.012319	0	0
MBD5	55777	broad.mit.edu	37	2	149226818	149226818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:149226818C>T	uc002twm.3	+	9	2294	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P436S|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	436						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CTCCCTGTCCCCTTCTCCAGT	0.488													19	43					0	0	0.007413	0	0
MBD5	55777	broad.mit.edu	37	2	149270438	149270438	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:149270438G>A	uc002twm.3	+	15	5402	c.4414_splice	c.e15-1	p.V1472_splice	MBD5_uc010zbs.1_Splice_Site|MBD5_uc010fns.2_Splice_Site_p.V1472_splice|MBD5_uc002two.2_Splice_Site_p.V730_splice|MBD5_uc002twp.2_Splice_Site_p.V522_splice	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5							chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TTTATTTCCAGGTACACCAAA	0.433													29	99					0	0	0.008361	0	0
EPC2	26122	broad.mit.edu	37	2	149528627	149528627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:149528627G>A	uc010zbt.1	+	10	1418	c.1391G>A	c.(1390-1392)CGA>CAA	p.R464Q		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	464					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		ATAATGGACCGAATATCCACA	0.368													10	26					0	0	0.006214	0	0
NEB	4703	broad.mit.edu	37	2	152500622	152500622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:152500622G>A	uc010fnx.2	-	57	7857	c.7666C>T	c.(7666-7668)CGC>TGC	p.R2556C		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2556	Nebulin 68.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGCTGCTTGCGAAAGCCTTCC	0.448													109	227					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152506743	152506743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:152506743G>A	uc010fnx.2	-	54	7569	c.7378C>T	c.(7378-7380)CCT>TCT	p.P2460S		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2460	Nebulin 66.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATGGCATCAGGAATGCTGGTG	0.378													20	42					0	0	0.014323	0	0
STAM2	10254	broad.mit.edu	37	2	153003815	153003815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:153003815G>A	uc002tyc.3	-	5	658	c.308C>T	c.(307-309)CCT>CTT	p.P103L	STAM2_uc010foa.1_Missense_Mutation_p.P103L|STAM2_uc002tyd.2_Missense_Mutation_p.P103L	NM_005843	NP_005834	O75886	STAM2_HUMAN	signal transducing adaptor molecule 2	103	VHS.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.22)		ACATACTTTAGGATGTGCCTT	0.308													26	74					0	0	0.007291	0	0
RPRM	56475	broad.mit.edu	37	2	154334761	154334761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:154334761C>T	uc002tyq.1	-	1	562	c.319G>A	c.(319-321)GGG>AGG	p.G107R		NM_019845	NP_062819	Q9NS64	RPRM_HUMAN	reprimo, TP53 dependant G2 arrest mediator	107					cell cycle arrest	cytoplasm|integral to membrane	protein binding				0						CAGTAGGGCCCCACGACCACC	0.647													11	26					0	0	0.010729	0	0
ERMN	57471	broad.mit.edu	37	2	158178150	158178150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:158178150C>T	uc002tzh.2	-	3	750	c.488G>A	c.(487-489)CGA>CAA	p.R163Q	ERMN_uc010zcj.1_Missense_Mutation_p.R57Q|ERMN_uc010zck.1_Missense_Mutation_p.R143Q|ERMN_uc002tzi.2_Missense_Mutation_p.R176Q	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	163						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						GCTAGGTTTTCGAAATCCCAG	0.378													47	82					0	0	0.014410	0	0
CYTIP	9595	broad.mit.edu	37	2	158272206	158272206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:158272206C>T	uc002tzj.1	-	8	1135	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K	CYTIP_uc010zcl.1_Missense_Mutation_p.E249K	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	355					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CGACTTTCTTCCTCTTCCACA	0.473													19	48					0	0	0.008871	0	0
CYTIP	9595	broad.mit.edu	37	2	158272595	158272596	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:158272595_158272596CC>TT	uc002tzj.1	-	8	745_746	c.673_674GG>AA	c.(673-675)GGA>AAA	p.G225K	CYTIP_uc010zcl.1_Missense_Mutation_p.G119K	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	225					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						AGGCAGGGGTCCAAACAAAGAC	0.5													16	54					0	0	0.004672	0	0
CCDC148	130940	broad.mit.edu	37	2	159033041	159033041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:159033041C>T	uc002tzq.2	-	13	1884	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	CCDC148_uc002tzr.2_Missense_Mutation_p.E389K|CCDC148_uc010foh.2_Missense_Mutation_p.E254K	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	541										ovary(2)	2						ACCTGCTGTTCATTGTATGTA	0.348													6	20					0	0	0.001984	0	0
BAZ2B	29994	broad.mit.edu	37	2	160194147	160194147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:160194147C>T	uc002uao.2	-	32	5943	c.5591G>A	c.(5590-5592)CGG>CAG	p.R1864Q	BAZ2B_uc002uap.2_Missense_Mutation_p.R1828Q	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1864					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GTCACTCTTCCGTTCTAGTGC	0.428													52	126					0	0	0.014410	0	0
MARCH7	64844	broad.mit.edu	37	2	160585558	160585558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:160585558C>T	uc002uax.2	+	2	147	c.25C>T	c.(25-27)CCA>TCA	p.P9S	MARCH7_uc010foq.2_Missense_Mutation_p.P9S|MARCH7_uc010zcn.1_Missense_Mutation_p.P9S	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	9							ligase activity|zinc ion binding				0						TTCAAGGATTCCAAGAAGAAT	0.343													25	51					0	0	0.024334	0	0
LY75	4065	broad.mit.edu	37	2	160746742	160746742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:160746742C>T	uc002ubc.3	-	4	853	c.784G>A	c.(784-786)GAA>AAA	p.E262K	LY75_uc002ubb.3_Missense_Mutation_p.E262K|LY75_uc010fos.2_Missense_Mutation_p.E262K|LY75_uc010fot.1_Missense_Mutation_p.E262K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	262	Extracellular (Potential).|C-type lectin 1.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TAAGTTAATTCAGCAGCACTG	0.353													17	55					0	0	0.007413	0	0
ITGB6	3694	broad.mit.edu	37	2	160958207	160958207	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:160958207C>T	uc002ubg.2	-	1		c.52G>A						P18564	ITB6_HUMAN	Homo sapiens cDNA: FLJ23083 fis, clone LNG06541, highly similar to IR2005735 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2005735.						cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						ATTAACATTTCATATCAGTGA	0.303													13	27					0	0	0.013537	0	0
TBR1	10716	broad.mit.edu	37	2	162274198	162274198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:162274198C>T	uc002ubw.1	+	2	1006	c.704C>T	c.(703-705)CCT>CTT	p.P235L	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	235	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CGCATGTTTCCTTTTTTAAGT	0.398													96	263					0	0	0.014410	0	0
IFIH1	64135	broad.mit.edu	37	2	163163287	163163287	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:163163287T>C	uc002uce.2	-	3	923	c.701A>G	c.(700-702)GAG>GGG	p.E234G		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	234					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						GACCTCCTTCTCCAGATTTGG	0.383													19	64					0	0	0.008871	0	0
KCNH7	90134	broad.mit.edu	37	2	163374317	163374317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:163374317C>T	uc002uch.1	-	4	1027	c.815G>A	c.(814-816)AGA>AAA	p.R272K	KCNH7_uc002uci.2_Missense_Mutation_p.R272K	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	272	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CGAAGATGCTCTCCGTATACT	0.458													10	40					0	0	0.006214	0	0
GRB14	2888	broad.mit.edu	37	2	165404237	165404237	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:165404237G>A	uc002ucl.2	-	3	955	c.414C>T	c.(412-414)ATC>ATT	p.I138I	GRB14_uc010zcv.1_Silent_p.I51I|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	138	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GATTCTTCAGGATCAACAGCT	0.438													14	43					0	0	0.028581	0	0
COBLL1	22837	broad.mit.edu	37	2	165551228	165551228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:165551228G>A	uc010zcw.1	-	15	3113	c.2989C>T	c.(2989-2991)CCT>TCT	p.P997S	COBLL1_uc002ucp.2_Missense_Mutation_p.P930S|COBLL1_uc002ucq.2_Missense_Mutation_p.P892S|COBLL1_uc010zcx.1_Missense_Mutation_p.P938S|COBLL1_uc002ucn.2_Missense_Mutation_p.P358S|COBLL1_uc002uco.2_Missense_Mutation_p.P661S	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	968										ovary(2)|pancreas(1)	3						GCAGGATTAGGGGCAGCATGG	0.478													10	36					0	0	0.008291	0	0
SLC38A11	151258	broad.mit.edu	37	2	165796040	165796040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:165796040G>A	uc002ucv.1	-	7	826	c.289C>T	c.(289-291)CGC>TGC	p.R97C	SLC38A11_uc002ucu.1_Missense_Mutation_p.R75C|SLC38A11_uc002ucw.1_Missense_Mutation_p.R97C	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11	97	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						ATGAAGTGGCGACCAATAAAC	0.328													23	44					0	0	0.024334	0	0
SCN2A	6326	broad.mit.edu	37	2	166210825	166210825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:166210825G>A	uc002udc.2	+	17	3333	c.3043G>A	c.(3043-3045)GAT>AAT	p.D1015N	SCN2A_uc002udd.2_Missense_Mutation_p.D1015N|SCN2A_uc002ude.2_Missense_Mutation_p.D1015N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1015					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GAAAGGAATCGATTTTGTTAA	0.348													56	154					0	0	0.014410	0	0
CSRNP3	80034	broad.mit.edu	37	2	166533014	166533014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:166533014G>A	uc002udf.2	+	6	977	c.601G>A	c.(601-603)GAA>AAA	p.E201K	CSRNP3_uc002udg.2_Missense_Mutation_p.E201K	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	201					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						AGAAAAGCACGAACTCCGAGC	0.522													45	90					0	0	0.011902	0	0
SCN1A	6323	broad.mit.edu	37	2	166897931	166897931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:166897931G>A	uc010zcz.1	-	13	2210	c.2192C>T	c.(2191-2193)TCC>TTC	p.S731F	SCN1A_uc002udo.3_Missense_Mutation_p.S611F|SCN1A_uc010fpk.2_Missense_Mutation_p.S583F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	742						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GAATATGTTGGAAAATTTATA	0.373													50	129					0	0	0.014410	0	0
SCN1A	6323	broad.mit.edu	37	2	166900267	166900267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:166900267G>A	uc010zcz.1	-	11	1973	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	SCN1A_uc002udo.3_Missense_Mutation_p.S521F|SCN1A_uc010fpk.2_Missense_Mutation_p.S521F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	652						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ACCAACCAAGGAAACCACACC	0.493													30	61					0	0	0.013726	0	0
SCN9A	6335	broad.mit.edu	37	2	167055481	167055481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:167055481C>T	uc010fpl.2	-	27	5976	c.5635G>A	c.(5635-5637)GAT>AAT	p.D1879N	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1890	IQ.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GCAGACACATCCTCTTGTTTC	0.398													81	206					0	0	0.014410	0	0
SCN9A	6335	broad.mit.edu	37	2	167085202	167085202	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:167085202A>G	uc010fpl.2	-	22	4513	c.4172T>C	c.(4171-4173)GTT>GCT	p.V1391A	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1402	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GACACTTACAACTTGAAGCAG	0.313													58	148					0	0	0.014410	0	0
XIRP2	129446	broad.mit.edu	37	2	168099832	168099832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:168099832C>T	uc002udx.2	+	8	1948	c.1930C>T	c.(1930-1932)CCT>TCT	p.P644S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P469S|XIRP2_uc010fpq.2_Missense_Mutation_p.P422S|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	469					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAGAAAATTCCTGAGCTAGC	0.433													22	47					0	0	0.010504	0	0
XIRP2	129446	broad.mit.edu	37	2	168101234	168101234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:168101234C>T	uc002udx.2	+	8	3350	c.3332C>T	c.(3331-3333)TCG>TTG	p.S1111L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S936L|XIRP2_uc010fpq.2_Missense_Mutation_p.S889L|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	936					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAAAGTTTCGTTAATGACC	0.368													15	32					0	0	0.024245	0	0
FASTKD1	79675	broad.mit.edu	37	2	170411657	170411657	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:170411657C>T	uc002uev.3	-	7	1579	c.1191G>A	c.(1189-1191)GCG>GCA	p.A397A	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Silent_p.A383A	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	397					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						CTCTAAGTTTCGCAAAAAACT	0.303													26	70					0	0	0.021523	0	0
MYO3B	140469	broad.mit.edu	37	2	171056708	171056708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:171056708C>T	uc002ufy.2	+	3	378	c.235C>T	c.(235-237)CCT>TCT	p.P79S	MYO3B_uc002ufv.2_Missense_Mutation_p.P66S|MYO3B_uc010fqb.1_Missense_Mutation_p.P66S|MYO3B_uc002ufz.2_Missense_Mutation_p.P79S|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.P66S	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	79	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCAGTTCCTTCCTAATCATCC	0.423													16	51					0	0	0.028581	0	0
DCAF17	80067	broad.mit.edu	37	2	172333454	172333454	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:172333454C>T	uc002ugx.2	+	11	1405	c.1176C>T	c.(1174-1176)AAC>AAT	p.N392N	DCAF17_uc010zdq.1_RNA|DCAF17_uc010fqf.1_Intron|DCAF17_uc010zdr.1_RNA|DCAF17_uc010fqg.2_Silent_p.N112N	NM_025000	NP_079276	Q5H9S7	DCA17_HUMAN	DDB1 and CUL4 associated factor 17 isoform 1	392						CUL4 RING ubiquitin ligase complex|integral to membrane|nucleolus					0						ACAGGGAGAACCATAAAGTAA	0.313													13	37					0	0	0.024245	0	0
SLC25A12	8604	broad.mit.edu	37	2	172700923	172700924	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:172700923_172700924GG>AT	uc002uhh.2	-	5	509_510	c.420_421CC>AT	c.(418-423)AACCGG>AAATGG	p.140_141NR>KW	SLC25A12_uc010fqh.2_Missense_Mutation_p.33_34NR>KW|SLC25A12_uc010zdv.1_RNA	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	140_141	EF-hand 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	TGCTTCTTCCGGTTATGCCCAA	0.356													34	105					0	0	0.004672	0	0
CHN1	1123	broad.mit.edu	37	2	175742774	175742774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:175742774C>T	uc002uji.2	-	6	873	c.343G>A	c.(343-345)GAT>AAT	p.D115N	CHN1_uc010zeq.1_Missense_Mutation_p.D115N|CHN1_uc002ujj.2_Intron	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	115	SH2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			GTCACCAGATCGTGGATGGAC	0.438			T	TAF15	extraskeletal myxoid chondrosarcoma								32	79					0	0	0.009535	0	0
HOXD1	3231	broad.mit.edu	37	2	177054007	177054007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:177054007C>T	uc002ukv.3	+	1	701	c.478C>T	c.(478-480)CCC>TCC	p.P160S	HOXD1_uc010fqy.2_Missense_Mutation_p.P160S|HOXD1_uc010zez.1_Missense_Mutation_p.P160S	NM_024501	NP_078777	Q9GZZ0	HXD1_HUMAN	homeobox D1	160						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.0226)		CTTCGGCGAACCCGGCCCTTT	0.682													5	20					0	0	0.014758	0	0
PDE11A	50940	broad.mit.edu	37	2	178879164	178879164	+	Silent	SNP	G	A	A	rs144284382		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:178879164G>A	uc002ulq.2	-	2	1254	c.936C>T	c.(934-936)ATC>ATT	p.I312I	PDE11A_uc002ulr.2_Silent_p.I62I|PDE11A_uc002ult.1_Silent_p.I62I	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	312	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TTAGCTTGTCGATTTCATCAT	0.393									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				13	31					0	0	0.013537	0	0
OSBPL6	114880	broad.mit.edu	37	2	179236866	179236866	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179236866A>T	uc002ulx.2	+	14	1679	c.1301A>T	c.(1300-1302)AAT>ATT	p.N434I	OSBPL6_uc002ulw.2_Intron|OSBPL6_uc002uly.2_Missense_Mutation_p.N459I|OSBPL6_uc010zfe.1_Missense_Mutation_p.N403I|OSBPL6_uc002ulz.2_Intron|OSBPL6_uc002uma.2_Missense_Mutation_p.N438I	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	434					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			CTCAACCAGAATGCTGAACTA	0.333													26	62					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179416538	179416538	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179416538C>T	uc010zfg.1	-	284	83609	c.83385G>A	c.(83383-83385)AAG>AAA	p.K27795K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K21490K|TTN_uc010zfi.1_Silent_p.K21423K|TTN_uc010zfj.1_Silent_p.K21298K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28722							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTTCTTTCTTTTCAACAT	0.398													27	120					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179438573	179438573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179438573C>T	uc010zfg.1	-	275	64806	c.64582G>A	c.(64582-64584)GAT>AAT	p.D21528N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D15223N|TTN_uc010zfi.1_Missense_Mutation_p.D15156N|TTN_uc010zfj.1_Missense_Mutation_p.D15031N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22455							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACCACTATCCCTTCTTGTT	0.418													22	53					0	0	0.014323	0	0
TTN	7273	broad.mit.edu	37	2	179452410	179452410	+	Missense_Mutation	SNP	C	T	T	rs148684589	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179452410C>T	uc010zfg.1	-	255	56146	c.55922G>A	c.(55921-55923)CGA>CAA	p.R18641Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12336Q|TTN_uc010zfi.1_Missense_Mutation_p.R12269Q|TTN_uc010zfj.1_Missense_Mutation_p.R12144Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19568							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCAACTTTTCGCCAAGTGAC	0.478													13	22					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179514906	179514906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179514906C>T	uc010zfg.1	-	164	32724	c.32500G>A	c.(32500-32502)GTT>ATT	p.V10834I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11761							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGGTGGAACCTCTGGTTCC	0.408													4	3					0	0	0.014758	0	0
TTN	7273	broad.mit.edu	37	2	179515540	179515540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179515540G>A	uc010zfg.1	-	163	32569	c.32345C>T	c.(32344-32346)CCT>CTT	p.P10782L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11709							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCAAGACAGGTTTCTTTGG	0.408													3	6					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179542471	179542471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179542471C>T	uc010zfg.1	-	143	30660	c.30436G>A	c.(30436-30438)GAA>AAA	p.E10146K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6807K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGGAATTTCCTCTTCTTCA	0.433													30	70					0	0	0.010818	0	0
TTN	7273	broad.mit.edu	37	2	179574561	179574561	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179574561G>A	uc010zfg.1	-	96	24977	c.24753C>T	c.(24751-24753)TTC>TTT	p.F8251F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F4912F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9178							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCTTTTAGTGAAACTTGGTG	0.398													24	68					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179590353	179590353	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179590353G>A	uc010zfg.1	-	68	17070	c.16846C>T	c.(16846-16848)CTG>TTG	p.L5616L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L2277L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGCTGTTCAGTTTGGAGACA	0.438													10	35					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179599176	179599176	+	Silent	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179599176A>C	uc010zfg.1	-	49	11867	c.11643T>G	c.(11641-11643)TCT>TCG	p.S3881S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S542S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4808							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGACTTCTGAGAAAACAATC	0.388													32	86					0	0	0.013726	0	0
TTN	7273	broad.mit.edu	37	2	179610723	179610723	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179610723G>A	uc002unb.2	-	46	16628	c.16404C>T	c.(16402-16404)CTC>CTT	p.L5468L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	8975							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCCATGGTGAGGAATCCCC	0.403													25	68					0	0	0.024334	0	0
TTN	7273	broad.mit.edu	37	2	179611800	179611800	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179611800G>A	uc002unb.2	-	46	15551	c.15327C>T	c.(15325-15327)CCC>CCT	p.P5109P	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCCCCTGGGGGTGTGGAAT	0.493													20	54					0	0	0.012319	0	0
TTN	7273	broad.mit.edu	37	2	179612008	179612008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179612008G>A	uc002unb.2	-	46	15343	c.15119C>T	c.(15118-15120)TCA>TTA	p.S5040L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	1144							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAAGGTGTTGAATATCTTTC	0.438													11	22					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179613768	179613768	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179613768C>T	uc002unb.2	-	46	13583	c.13359G>A	c.(13357-13359)GGG>GGA	p.G4453G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACCTTTTTCCCCGGGTAGT	0.348													15	30					0	0	0.020292	0	0
TTN	7273	broad.mit.edu	37	2	179613913	179613913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179613913G>A	uc002unb.2	-	46	13438	c.13214C>T	c.(13213-13215)TCA>TTA	p.S4405L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCTTTTCTGATCTACCAAG	0.338													11	27					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179634635	179634635	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179634635G>A	uc010zfg.1	-	37	8897	c.8673C>T	c.(8671-8673)ATC>ATT	p.I2891I	TTN_uc010zfh.1_Silent_p.I2845I|TTN_uc010zfi.1_Silent_p.I2845I|TTN_uc010zfj.1_Silent_p.I2845I|TTN_uc002unb.2_Silent_p.I2891I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2891							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGCACCTCGATATTTTTCA	0.373													36	80					0	0	0.023175	0	0
TTN	7273	broad.mit.edu	37	2	179640452	179640452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179640452C>T	uc010zfg.1	-	28	6363	c.6139G>A	c.(6139-6141)GAA>AAA	p.E2047K	TTN_uc010zfh.1_Missense_Mutation_p.E2001K|TTN_uc010zfi.1_Missense_Mutation_p.E2001K|TTN_uc010zfj.1_Missense_Mutation_p.E2001K|TTN_uc002unb.2_Missense_Mutation_p.E2047K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2047							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTCCTCTTCAGTTAACTCT	0.423													34	90					0	0	0.015359	0	0
TTN	7273	broad.mit.edu	37	2	179644017	179644017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179644017C>T	uc010zfg.1	-	23	4126	c.3902G>A	c.(3901-3903)AGA>AAA	p.R1301K	TTN_uc010zfh.1_Missense_Mutation_p.R1255K|TTN_uc010zfi.1_Missense_Mutation_p.R1255K|TTN_uc010zfj.1_Missense_Mutation_p.R1255K|TTN_uc002unb.2_Missense_Mutation_p.R1301K|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1301							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.A1301T(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCAAGAATTCTATAATTCTT	0.358													8	41					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179647089	179647089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:179647089C>T	uc010zfg.1	-	20	3454	c.3230G>A	c.(3229-3231)GGA>GAA	p.G1077E	TTN_uc010zfh.1_Missense_Mutation_p.G1031E|TTN_uc010zfi.1_Missense_Mutation_p.G1031E|TTN_uc010zfj.1_Missense_Mutation_p.G1031E|TTN_uc002unb.2_Missense_Mutation_p.G1077E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1077							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCAGGTTCTCCAGGCCCTGC	0.507													25	61					0	0	0.027356	0	0
CERKL	375298	broad.mit.edu	37	2	182468673	182468673	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:182468673G>A	uc002unx.2	-	2	473	c.372C>T	c.(370-372)ATC>ATT	p.I124I	CERKL_uc002uny.2_Silent_p.I124I|CERKL_uc010zfm.1_Silent_p.I124I|CERKL_uc002unz.2_5'UTR|CERKL_uc002uoa.2_Silent_p.I124I|CERKL_uc002uob.2_5'UTR|CERKL_uc002uoc.2_Silent_p.I124I|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_5'UTR|CERKL_uc002uoe.2_Silent_p.I124I	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	124					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TTTTCAAGCAGATGAAGAGTG	0.323													10	39					0	0	0.006214	0	0
SSFA2	6744	broad.mit.edu	37	2	182765545	182765545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:182765545C>T	uc002uoi.2	+	7	948	c.626C>T	c.(625-627)TCC>TTC	p.S209F	SSFA2_uc002uoh.2_Missense_Mutation_p.S209F|SSFA2_uc002uoj.2_Missense_Mutation_p.S209F|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.S56F|SSFA2_uc002uol.2_Missense_Mutation_p.S56F	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	209						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			AATTCATCATCCTTTGCCAAA	0.323													17	39					0	0	0.006122	0	0
PDE1A	5136	broad.mit.edu	37	2	183051210	183051210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:183051210G>A	uc002uos.2	-	13	1445	c.1361C>T	c.(1360-1362)TCC>TTC	p.S454F	PDE1A_uc010zfp.1_Missense_Mutation_p.S350F|PDE1A_uc002uoq.1_Missense_Mutation_p.S454F|PDE1A_uc010zfq.1_Missense_Mutation_p.S454F|PDE1A_uc002uor.2_Missense_Mutation_p.S438F|PDE1A_uc002uou.2_Missense_Mutation_p.S420F	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	454	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TGCCACATAGGAAGAAGTTTC	0.338													5	33					0	0	0.021553	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798390	185798390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:185798390G>A	uc002uph.2	+	3	910	c.316G>A	c.(316-318)GAT>AAT	p.D106N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	106						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATCCAGGAAAGATGAAAGAAA	0.373													12	36					0	0	0.016723	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693132	187693132	+	Missense_Mutation	SNP	G	A	A	rs138793510		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:187693132G>A	uc002upu.1	-	9	1521	c.1481C>T	c.(1480-1482)CCC>CTC	p.P494L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	494					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AAGATACCTGGGAAAATGTTG	0.318													9	31					0	0	0.006214	0	0
CALCRL	10203	broad.mit.edu	37	2	188216924	188216924	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:188216924A>G	uc002upv.3	-	13	1593	c.1045T>C	c.(1045-1047)TTT>CTT	p.F349L	CALCRL_uc010frt.2_Missense_Mutation_p.F349L	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	349	Helical; Name=6; (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			ATCAGCACAAATTCAATGCCA	0.428													7	14					0	0	0.003080	0	0
COL5A2	1290	broad.mit.edu	37	2	189932971	189932971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:189932971G>A	uc002uqk.2	-	20	1558	c.1283C>T	c.(1282-1284)CCT>CTT	p.P428L	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	428					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TTTGGCACCAGGAGTACCATC	0.408													35	71					0	0	0.025465	0	0
Unknown	0	broad.mit.edu	37	2	190788339	190788339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:190788339G>A	uc002uro.2	+	1	421	c.278G>A	c.(277-279)GGA>GAA	p.G93E						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		GTGAACCGAGGAAAAGCAGGT	0.483													42	112					0	0	0.011902	0	0
STAT4	6775	broad.mit.edu	37	2	191894583	191894583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:191894583G>A	uc002usm.1	-	24	2484	c.2230C>T	c.(2230-2232)CCT>TCT	p.P744S	STAT4_uc002usn.1_Missense_Mutation_p.P744S	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	744					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GCAGAATAAGGAGACTTCATC	0.323													58	162					0	0	0.014410	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545682	196545682	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:196545682C>T	uc002utg.3	+	2	1130	c.916C>T	c.(916-918)CGA>TGA	p.R306*	SLC39A10_uc002uth.3_Nonsense_Mutation_p.R306*|SLC39A10_uc010zgp.1_5'UTR	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	306					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			AGGTGAACTTCGACATACTAG	0.368													25	67					0	0	0.018920	0	0
DNAH7	56171	broad.mit.edu	37	2	196661370	196661370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:196661370C>T	uc002utj.3	-	56	10546	c.10445G>A	c.(10444-10446)GGA>GAA	p.G3482E	DNAH7_uc002uti.3_5'Flank	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3482	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AACCCATGTTCCTTCCTTGAC	0.418													17	46					0	0	0.004990	0	0
DNAH7	56171	broad.mit.edu	37	2	196722214	196722214	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:196722214G>A	uc002utj.3	-	44	8402	c.8301C>T	c.(8299-8301)ATC>ATT	p.I2767I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2767	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTTTCTTATGATATTCATAT	0.393													18	45					0	0	0.004990	0	0
DNAH7	56171	broad.mit.edu	37	2	196749422	196749422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:196749422G>A	uc002utj.3	-	35	5751	c.5650C>T	c.(5650-5652)CGA>TGA	p.R1884*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1884					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTCGAGTTCGATCTGAAATT	0.358													39	75					0	0	0.023175	0	0
DNAH7	56171	broad.mit.edu	37	2	196753020	196753020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:196753020C>T	uc002utj.3	-	33	5469	c.5368G>A	c.(5368-5370)GTC>ATC	p.V1790I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1790	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAAACAGGGACCATTCTGTCA	0.353													15	34					0	0	0.028581	0	0
STK17B	9262	broad.mit.edu	37	2	197005998	197005998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:197005998G>A	uc002utk.2	-	6	955	c.631C>T	c.(631-633)CCC>TCC	p.P211S	STK17B_uc010fsh.2_Missense_Mutation_p.P211S	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	211	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			GTGGTAATGGGATCATAGTTC	0.313													9	25					0	0	0.004482	0	0
HECW2	57520	broad.mit.edu	37	2	197171330	197171330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:197171330C>T	uc002utm.1	-	13	2879	c.2696G>A	c.(2695-2697)CGA>CAA	p.R899Q	HECW2_uc002utl.1_Missense_Mutation_p.R543Q	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	899	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTTCTCCCGTCGGAAATCTAG	0.488													21	50					0	0	0.010504	0	0
SATB2	23314	broad.mit.edu	37	2	200137014	200137014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:200137014C>T	uc002uuy.1	-	11	2939	c.2122G>A	c.(2122-2124)GAG>AAG	p.E708K	SATB2_uc010fsq.1_Missense_Mutation_p.E590K|SATB2_uc002uuz.1_Missense_Mutation_p.E708K|SATB2_uc002uva.1_Missense_Mutation_p.E708K	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	708						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TACATCTCCTCGGAGCCTTCC	0.532													20	68					0	0	0.008871	0	0
FAM126B	285172	broad.mit.edu	37	2	201846418	201846418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:201846418C>T	uc002uws.3	-	12	1356	c.1168G>A	c.(1168-1170)GCC>ACC	p.A390T	FAM126B_uc002uwu.2_Missense_Mutation_p.A364T|FAM126B_uc002uwv.2_Missense_Mutation_p.A390T	NM_173822	NP_776183	Q8IXS8	F126B_HUMAN	hypothetical protein LOC285172	390						intracellular				ovary(1)	1						ATGGCAGAGGCTGTTTCTTTA	0.488													20	59					0	0	0.010504	0	0
CASP10	843	broad.mit.edu	37	2	202093788	202093788	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:202093788G>A	uc002uxl.1	+	10	1966	c.1548G>A	c.(1546-1548)AGG>AGA	p.R516R	CASP10_uc002uxm.1_Silent_p.R473R	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	516					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						CCATGCGCAGGTGGAGCAGCG	0.587													55	163					0	0	0.014410	0	0
CASP8	841	broad.mit.edu	37	2	202149718	202149718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:202149718G>A	uc002uxr.1	+	9	1191	c.982G>A	c.(982-984)GGA>AGA	p.G328R	CASP8_uc002uxp.1_Missense_Mutation_p.G345R|CASP8_uc002uxq.1_Missense_Mutation_p.G313R|CASP8_uc002uxt.1_Missense_Mutation_p.G387R|CASP8_uc002uxu.1_RNA|CASP8_uc002uxw.1_Missense_Mutation_p.G313R|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Missense_Mutation_p.G244R	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	328					activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						TGGCACTGATGGACAGGAGGC	0.468										HNSCC(4;0.00038)			93	227					0	0	0.014410	0	0
TRAK2	66008	broad.mit.edu	37	2	202264134	202264134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:202264134G>A	uc002uyb.3	-	5	892	c.446C>T	c.(445-447)TCC>TTC	p.S149F	TRAK2_uc002uyc.2_Missense_Mutation_p.S149F	NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	149	Potential.					early endosome|plasma membrane	GABA receptor binding				0						CTCCTCCAGGGATTCGTTCTG	0.388													14	39					0	0	0.024245	0	0
ALS2CR4	65062	broad.mit.edu	37	2	202492842	202492842	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:202492842G>A	uc002uyh.1	-	11	1001	c.900C>T	c.(898-900)ATC>ATT	p.I300I	ALS2CR4_uc002uyg.1_Silent_p.I292I|ALS2CR4_uc010zho.1_Silent_p.I95I	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	324						integral to membrane	protein binding				0						AAAAATTTCGGATTGCTACTG	0.323													10	24					0	0	0.010729	0	0
FZD7	8324	broad.mit.edu	37	2	202900792	202900792	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:202900792C>T	uc002uyw.1	+	1	1483	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	474	Helical; Name=6; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						TCGGCGTCTTCAGCGTGCTCT	0.622											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	99					0	0	0.007835	0	0
ZDBF2	57683	broad.mit.edu	37	2	207169640	207169640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:207169640G>A	uc002vbp.2	+	5	638	c.388G>A	c.(388-390)GAG>AAG	p.E130K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	130							nucleic acid binding|zinc ion binding			ovary(3)	3						AGGCACGCAGGAGGTTTCAGT	0.458													8	32					0	0	0.004482	0	0
ERBB4	2066	broad.mit.edu	37	2	212488680	212488680	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:212488680G>A	uc002veg.1	-	18	2267	c.2169C>T	c.(2167-2169)GTC>GTT	p.V723V	ERBB4_uc002veh.1_Silent_p.V723V|ERBB4_uc010zji.1_Silent_p.V713V|ERBB4_uc010zjj.1_Silent_p.V713V|ERBB4_uc010fut.1_Silent_p.V723V	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	723	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CTGAGCCAAGGACTTTTACCC	0.388										TSP Lung(8;0.080)			23	64					0	0	0.021523	0	0
ERBB4	2066	broad.mit.edu	37	2	212587181	212587181	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:212587181G>A	uc002veg.1	-	7	918	c.820C>T	c.(820-822)CAA>TAA	p.Q274*	ERBB4_uc002veh.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010zji.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010zjj.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010fut.1_Nonsense_Mutation_p.Q274*	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	274	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGCTCCAGTTGAAAGGTGGTT	0.388										TSP Lung(8;0.080)			23	46					0	0	0.016522	0	0
VWC2L	402117	broad.mit.edu	37	2	215440493	215440493	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:215440493G>A	uc002vet.2	+	4	748	c.618G>A	c.(616-618)TGG>TGA	p.W206*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	206						extracellular region					0						GGGACTGGTGGAAGCCTGCTC	0.478													41	108					0	0	0.011902	0	0
ABCA12	26154	broad.mit.edu	37	2	215875108	215875108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:215875108C>T	uc002vew.2	-	18	2639	c.2419G>A	c.(2419-2421)GGA>AGA	p.G807R	ABCA12_uc002vev.2_Missense_Mutation_p.G489R|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	807					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAAATTCTTCCCAACAACATA	0.368													14	65					0	0	0.016723	0	0
TNP1	7141	broad.mit.edu	37	2	217724400	217724400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:217724400G>A	uc002vgk.2	-	2	183	c.158C>T	c.(157-159)TCC>TTC	p.S53F		NM_003284	NP_003275	P09430	STP1_HUMAN	transition protein 1 (during histone to	53					chromatin silencing|fertilization, exchange of chromosomal proteins|multicellular organismal development|nucleosome disassembly|single strand break repair|sperm motility|spermatid nucleus elongation	nucleosome	DNA binding				0		Renal(207;0.0822)		Epithelial(149;8.97e-07)|all cancers(144;2.46e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCACAAGTGGGAGCGGTAATT	0.522													36	92					0	0	0.027894	0	0
CXCR1	3577	broad.mit.edu	37	2	219029047	219029047	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:219029047G>A	uc002vhc.2	-	2	1007	c.888C>T	c.(886-888)CTC>CTT	p.L296L		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	296	Helical; Name=7; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						GGCAGCTATGGAGAAATCCCA	0.562													50	109					0	0	0.014410	0	0
PNKD	25953	broad.mit.edu	37	2	219204529	219204529	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:219204529G>A	uc002vhn.2	+	3	404	c.260G>A	c.(259-261)TGG>TAG	p.W87*	PNKD_uc002vhq.2_Nonsense_Mutation_p.W63*	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	87						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCCGCACCTGGCTCGGGTAC	0.602													17	44					0	0	0.010504	0	0
ZNF142	7701	broad.mit.edu	37	2	219513622	219513622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:219513622G>A	uc002vin.2	-	6	1445	c.1009C>T	c.(1009-1011)CAC>TAC	p.H337Y	ZNF142_uc002vil.2_Missense_Mutation_p.H298Y|ZNF142_uc010fvt.2_Missense_Mutation_p.H174Y|ZNF142_uc002vim.2_Missense_Mutation_p.H174Y	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	337	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TGACTCTTGTGGTGGGCCTCC	0.562											OREG0015202	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	69					0	0	0.014323	0	0
ABCB6	10058	broad.mit.edu	37	2	220081123	220081123	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:220081123G>A	uc002vkc.1	-	4	1210	c.933C>T	c.(931-933)TTC>TTT	p.F311F	ABCB6_uc010fwe.1_Silent_p.F265F|ABCB6_uc010zku.1_RNA	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	311	ABC transmembrane type-1.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAACTTGAGGAAGACGTAAC	0.562													26	78					0	0	0.008361	0	0
SPEG	10290	broad.mit.edu	37	2	220312828	220312828	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:220312828C>T	uc010fwg.2	+	4	948	c.948C>T	c.(946-948)GTC>GTT	p.V316V	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR|SPEG_uc002vlp.1_5'Flank	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	316	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCCCTCGGGTCGGGAAGCGGT	0.751													9	17					0	0	0.006214	0	0
SPEG	10290	broad.mit.edu	37	2	220342693	220342693	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:220342693C>T	uc010fwg.2	+	22	4893	c.4893C>T	c.(4891-4893)TTC>TTT	p.F1631F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1631	Protein kinase 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CGGCCAAGTTCATCCCCAGCC	0.637													90	195					0	0	0.014410	0	0
GMPPA	29926	broad.mit.edu	37	2	220370719	220370719	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:220370719C>T	uc002vlr.2	+	11	986	c.918C>T	c.(916-918)TCC>TCT	p.S306S	GMPPA_uc002vls.2_Silent_p.S306S|GMPPA_uc002vlt.2_Silent_p.S359S|GMPPA_uc002vlu.2_Silent_p.S359S|GMPPA_uc002vlv.2_Silent_p.S306S|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Silent_p.S306S	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	306					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		CCAACGTCTCCATCGGGAAGG	0.398													7	15					0	0	0.003080	0	0
STK11IP	114790	broad.mit.edu	37	2	220473424	220473424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:220473424C>T	uc002vml.2	+	15	1799	c.1756C>T	c.(1756-1758)CGC>TGC	p.R586C	STK11IP_uc010zll.1_Missense_Mutation_p.R543C|STK11IP_uc002vmm.1_Missense_Mutation_p.R575C	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	586	Glu-rich.				protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAAGCAGCTCGCACCTTGGA	0.652													22	53					0	0	0.010504	0	0
EPHA4	2043	broad.mit.edu	37	2	222428866	222428866	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:222428866G>A	uc002vmq.2	-	3	450	c.408C>T	c.(406-408)TTC>TTT	p.F136F	EPHA4_uc002vmr.2_Silent_p.F136F|EPHA4_uc010zlm.1_Silent_p.F77F|EPHA4_uc010zln.1_Silent_p.F136F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	136	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TCTCTCTGATGAAACGCTCTT	0.468													67	149					0	0	0.014410	0	0
SCG2	7857	broad.mit.edu	37	2	224463214	224463214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:224463214C>T	uc002vnm.2	-	2	920	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	263					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCACCTCTTCCTGGGTTTGA	0.433													80	269					0	0	0.014410	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447029	226447029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:226447029C>T	uc002voe.2	+	4	1071	c.896C>T	c.(895-897)CCC>CTC	p.P299L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P69L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	299										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGTGCTACTCCCACGGTGCCT	0.577													41	96					0	0	0.008740	0	0
COL4A4	1286	broad.mit.edu	37	2	227875143	227875143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:227875143G>A	uc010zlt.1	-	45	5062	c.4408C>T	c.(4408-4410)CTC>TTC	p.L1470F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1470	Collagen IV NC1.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGACTGTGGAGAACCAGGAGG	0.577													36	64					0	0	0.015359	0	0
COL4A4	1286	broad.mit.edu	37	2	227892716	227892716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:227892716C>T	uc010zlt.1	-	42	4637	c.3983G>A	c.(3982-3984)GGA>GAA	p.G1328E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1328	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCCGGGAATCCCACTGGTCC	0.478													7	17					0	0	0.001984	0	0
COL4A4	1286	broad.mit.edu	37	2	227946830	227946830	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:227946830C>T	uc010zlt.1	-	23	2350	c.1696_splice	c.e23+1	p.G566_splice		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor						axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ATTATGCTCACCTTTAACTCT	0.423													45	123					0	0	0.011902	0	0
COL4A4	1286	broad.mit.edu	37	2	227967554	227967554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:227967554C>T	uc010zlt.1	-	15	1535	c.881G>A	c.(880-882)GGT>GAT	p.G294D		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	294	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGCCCCAATACCAGATTCTCC	0.383													45	143					0	0	0.014410	0	0
COL4A3	1285	broad.mit.edu	37	2	228148999	228148999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:228148999G>A	uc002vom.1	+	34	2981	c.2819G>A	c.(2818-2820)GGA>GAA	p.G940E	COL4A3_uc002von.1_Missense_Mutation_p.G940E|COL4A3_uc002voo.1_Missense_Mutation_p.G940E|COL4A3_uc002vop.1_Missense_Mutation_p.G940E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	940	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGAGATAAAGGAAATCCCGGG	0.448													31	72					0	0	0.009535	0	0
SPHKAP	80309	broad.mit.edu	37	2	228860280	228860280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:228860280C>T	uc002vpq.2	-	8	4626	c.4579G>A	c.(4579-4581)GAA>AAA	p.E1527K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1527K|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1527						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGTTGTCTTCCTCATTGGCA	0.572													49	136					0	0	0.014410	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883843	228883843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:228883843C>T	uc002vpq.2	-	7	1774	c.1727G>A	c.(1726-1728)AGA>AAA	p.R576K	SPHKAP_uc002vpp.2_Missense_Mutation_p.R576K|SPHKAP_uc010zlx.1_Missense_Mutation_p.R576K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	576						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CACCTCTTCTCTTTCACCCAG	0.552													46	125					0	0	0.014410	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883992	228883992	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:228883992C>T	uc002vpq.2	-	7	1625	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	SPHKAP_uc002vpp.2_Silent_p.S526S|SPHKAP_uc010zlx.1_Silent_p.S526S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	526						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGGAAAGTTCGAGACCACTT	0.502													38	106					0	0	0.025465	0	0
TRIP12	9320	broad.mit.edu	37	2	230660029	230660029	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:230660029G>A	uc002vpw.1	-	25	3718	c.3609C>T	c.(3607-3609)CCC>CCT	p.P1203P	TRIP12_uc002vpx.1_Silent_p.P1251P|TRIP12_uc002vpy.1_Silent_p.P933P	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1203					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		CTCTTCCAATGGGCTCTTCTC	0.393													23	52					0	0	0.021523	0	0
SP140	11262	broad.mit.edu	37	2	231112769	231112769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:231112769G>A	uc002vql.2	+	8	996	c.881G>A	c.(880-882)GGA>GAA	p.G294E	SP140_uc010zma.1_Intron|SP140_uc002vqk.2_Missense_Mutation_p.G294E|SP140_uc002vqn.2_Intron|SP140_uc002vqm.2_Missense_Mutation_p.G268E|SP140_uc010fxl.2_Missense_Mutation_p.G294E	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	294					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AGTCCAGAGGGAAGAGACAAA	0.512													11	37					0	0	0.013537	0	0
SP140L	93349	broad.mit.edu	37	2	231254654	231254654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:231254654G>A	uc010fxm.1	+	11	971	c.880G>A	c.(880-882)GAA>AAA	p.E294K	SP140L_uc010fxo.1_Intron	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	294	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GCACAAAGATGAAACTGTGGA	0.433													19	44					0	0	0.006122	0	0
SP140L	93349	broad.mit.edu	37	2	231256845	231256845	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:231256845C>T	uc010fxm.1	+	12	1099	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	SP140L_uc010fxo.1_Silent_p.F108F	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	336	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GAAAATGGTTCACCCCCATGG	0.527													27	63					0	0	0.024334	0	0
ALPI	248	broad.mit.edu	37	2	233322372	233322372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:233322372G>A	uc002vst.3	+	6	823	c.746G>A	c.(745-747)GGG>GAG	p.G249E	ALPI_uc002vsu.3_Missense_Mutation_p.G160E	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	249					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		AGGCTGGACGGGAAGAACCTG	0.627													44	94					0	0	0.013114	0	0
EIF4E2	9470	broad.mit.edu	37	2	233431625	233431625	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:233431625C>T	uc002vta.2	+	5	540	c.462C>T	c.(460-462)GCC>GCT	p.A154A	EIF4E2_uc002vtb.1_Silent_p.A154A|EIF4E2_uc010zmi.1_Silent_p.A109A	NM_004846	NP_004837	O60573	IF4E2_HUMAN	eukaryotic translation initiation factor 4E	154	EIF4EBP1/2/3 binding.				regulation of translation	cytoplasm|mRNA cap binding complex	RNA cap binding|translation initiation factor activity|ubiquitin protein ligase binding				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;2.3e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000912)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TCATTTTGGCCATGCTGGGGG	0.527													28	96					0	0	0.009535	0	0
INPP5D	3635	broad.mit.edu	37	2	234112876	234112876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234112876C>T	uc010zmo.1	+	25	3233	c.3080C>T	c.(3079-3081)TCC>TTC	p.S1027F	INPP5D_uc010zmp.1_Missense_Mutation_p.S1026F	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1027	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TCCCTGAGTTCCTTCCCTAAG	0.632													16	45					0	0	0.028581	0	0
SAG	6295	broad.mit.edu	37	2	234217864	234217864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234217864C>T	uc002vuh.2	+	2	417	c.29C>T	c.(28-30)TCC>TTC	p.S10F	SAG_uc002vug.2_Intron|SAG_uc010zmq.1_5'UTR	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	10					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		ACCAGCAAGTCCGAACCGAAC	0.463													15	33					0	0	0.006122	0	0
DGKD	8527	broad.mit.edu	37	2	234360641	234360641	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234360641C>T	uc002vui.1	+	18	2211	c.2199C>T	c.(2197-2199)CCC>CCT	p.P733P	DGKD_uc002vuj.1_Silent_p.P689P|DGKD_uc010fyh.1_Silent_p.P600P|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	733					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	GTTCCTTACCCGGTGGCTCAG	0.498													42	113					0	0	0.014410	0	0
USP40	55230	broad.mit.edu	37	2	234468559	234468559	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234468559G>A	uc010zmu.1	-	4	397	c.279C>T	c.(277-279)ATC>ATT	p.I93I	USP40_uc010zmr.1_Silent_p.I105I			Q9NVE5	UBP40_HUMAN	SubName: Full=cDNA FLJ56772, highly similar to Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15);	93					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		ACTGTAAAGGGATGATTCGAA	0.408													7	14					0	0	0.003080	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669609	234669609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234669609G>A	uc002vvb.2	+	1	691	c.676G>A	c.(676-678)GTT>ATT	p.V226I	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Missense_Mutation_p.V226I	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	226					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	GTGCGACGTGGTTTATTCCCC	0.507													129	254					0	0	0.014410	0	0
TRPM8	79054	broad.mit.edu	37	2	234869601	234869601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234869601C>T	uc002vvh.2	+	12	1584	c.1544C>T	c.(1543-1545)TCC>TTC	p.S515F	TRPM8_uc010fyj.2_Missense_Mutation_p.S203F	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	515	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GCCAAGAATTCCTATAATGAT	0.498													37	71					0	0	0.027894	0	0
SPP2	6694	broad.mit.edu	37	2	234959619	234959619	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:234959619C>T	uc002vvk.1	+	2	175	c.90C>T	c.(88-90)TTC>TTT	p.F30F	SPP2_uc010fyl.1_Intron	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	30					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		GTCCAGGTTTCCCAGTGTACG	0.542													11	36					0	0	0.010729	0	0
IQCA1	79781	broad.mit.edu	37	2	237300635	237300635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:237300635C>T	uc002vvz.1	-	11	1579	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E	IQCA1_uc002vwb.2_Missense_Mutation_p.G473E|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.G425E	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	466	Lys-rich.						ATP binding			ovary(1)	1						CTTTTTCTTTCCTGCTTTCAC	0.468													94	290					0	0	0.014410	0	0
COL6A3	1293	broad.mit.edu	37	2	238266502	238266502	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:238266502C>T	uc002vwl.2	-	22	6780	c.6495G>A	c.(6493-6495)CAG>CAA	p.Q2165Q	COL6A3_uc002vwo.2_Silent_p.Q1959Q|COL6A3_uc010znj.1_Silent_p.Q1558Q|COL6A3_uc002vwp.1_5'Flank	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2165	Triple-helical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTCCTCTCTCCTGGCTGTCTT	0.542													133	354					0	0	0.014410	0	0
COL6A3	1293	broad.mit.edu	37	2	238280629	238280629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:238280629G>A	uc002vwl.2	-	9	4316	c.4031C>T	c.(4030-4032)TCG>TTG	p.S1344L	COL6A3_uc002vwo.2_Missense_Mutation_p.S1138L|COL6A3_uc010znj.1_Missense_Mutation_p.S737L|COL6A3_uc002vwq.2_Missense_Mutation_p.S1138L|COL6A3_uc002vwr.2_Missense_Mutation_p.S937L	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1344	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTTTCCAGACGAGATGAGGAC	0.612													33	49					0	0	0.012213	0	0
COL6A3	1293	broad.mit.edu	37	2	238280757	238280757	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:238280757C>T	uc002vwl.2	-	9	4188	c.3903G>A	c.(3901-3903)CGG>CGA	p.R1301R	COL6A3_uc002vwo.2_Silent_p.R1095R|COL6A3_uc010znj.1_Silent_p.R694R|COL6A3_uc002vwq.2_Silent_p.R1095R|COL6A3_uc002vwr.2_Silent_p.R894R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1301	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGGGCCTCAGCCGCTGCACCG	0.617													40	94					0	0	0.013114	0	0
PER2	8864	broad.mit.edu	37	2	239162251	239162251	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:239162251G>A	uc002vyc.2	-	19	2650	c.2413C>T	c.(2413-2415)CGA>TGA	p.R805*	PER2_uc010znv.1_Nonsense_Mutation_p.R805*	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	805	Nuclear localization signal (By similarity).				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GATGAGTCTCGAGGTTTGACC	0.557													5	27					0	0	0.014758	0	0
MTERFD2	130916	broad.mit.edu	37	2	242035496	242035496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:242035496C>T	uc002wan.1	-	3	1643	c.1150G>A	c.(1150-1152)GAC>AAC	p.D384N	MTERFD2_uc010zoj.1_Missense_Mutation_p.D167N	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	355										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		tcatcattgtcatcctcatca	0.214													33	70					0	0	0.012213	0	0
HDLBP	3069	broad.mit.edu	37	2	242174968	242174968	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:242174968G>A	uc002waz.2	-	22	3174	c.2946C>T	c.(2944-2946)GAC>GAT	p.D982D	HDLBP_uc002wba.2_Silent_p.D982D|HDLBP_uc002wbb.2_Silent_p.D934D	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	982	KH 12.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		AACGGTGAAGGTCAAAGGGCA	0.537													56	146					0	0	0.014410	0	0
SEPT2	4735	broad.mit.edu	37	2	242265433	242265433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:242265433C>T	uc002wbc.2	+	4	456	c.35C>T	c.(34-36)CCA>CTA	p.P12L	SEPT2_uc002wbd.2_Missense_Mutation_p.P12L|SEPT2_uc002wbf.2_Missense_Mutation_p.P12L|SEPT2_uc002wbg.2_Missense_Mutation_p.P12L|SEPT2_uc002wbh.2_Missense_Mutation_p.P12L|SEPT2_uc010zop.1_Missense_Mutation_p.P47L	NM_001008491	NP_001008491	Q15019	SEPT2_HUMAN	septin 2	12					cell division|mitosis	actin cytoskeleton|cleavage furrow|condensed chromosome kinetochore|midbody|nucleolus|septin complex|spindle	GTP binding			central_nervous_system(1)	1		all_cancers(19;7.62e-41)|all_epithelial(40;1.71e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.24e-34)|all cancers(36;7.15e-32)|OV - Ovarian serous cystadenocarcinoma(60;1.21e-15)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;3.16e-06)|Lung(119;7.81e-05)|LUSC - Lung squamous cell carcinoma(224;0.000742)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0889)		TTTATAAATCCAGAAACACCT	0.353													33	63					0	0	0.013726	0	0
THAP4	51078	broad.mit.edu	37	2	242542425	242542426	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:242542425_242542426GG>AA	uc002wbt.2	-	4	1692_1693	c.1469_1470CC>TT	c.(1468-1470)CCC>CTT	p.P490L	THAP4_uc002wbs.2_Missense_Mutation_p.P78L	NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	490							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		TGTTGGTGTCGGGCTTGAGGCG	0.624													46	144					0	0	0.004672	0	0
FKBP1A	2280	broad.mit.edu	37	20	1298884	1298884	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:1298884C>T	uc010gac.2	-	5	581	c.303G>A	c.(301-303)CAG>CAA	p.Q101Q	SDCBP2_uc002wev.3_Intron|SDCBP2_uc010zpq.1_Intron			P62942	FKB1A_HUMAN	Homo sapiens FKBP12-Exip2 mRNA for FK506 binding protein12, complete cds.	Error:Variant_position_missing_in_P62942_after_alignment					'de novo' protein folding|beta-amyloid formation|fibril organization|heart trabecula formation|negative regulation of protein phosphatase type 2B activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein binding|positive regulation of protein ubiquitination|protein maturation by protein folding|protein refolding|regulation of activin receptor signaling pathway|regulation of immune response|regulation of ryanodine-sensitive calcium-release channel activity|SMAD protein complex assembly|T cell activation|ventricular cardiac muscle tissue morphogenesis	axon|cytosol|sarcoplasmic reticulum membrane|terminal cisterna	activin binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity|signal transducer activity|SMAD binding|type I transforming growth factor beta receptor binding				0					Pimecrolimus(DB00337)|Sirolimus(DB00877)|Tacrolimus(DB00864)	GAAAGAAGGTCTGTTGAAATG	0.522													19	37					0	0	0.006122	0	0
TGM6	343641	broad.mit.edu	37	20	2375243	2375243	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:2375243G>A	uc002wfy.1	+	2	214	c.153G>A	c.(151-153)GAG>GAA	p.E51E	TGM6_uc010gal.1_Silent_p.E51E	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	51					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	TGGACTGTGAGGAGATCCTCA	0.592													13	25					0	0	0.013537	0	0
TGM6	343641	broad.mit.edu	37	20	2411557	2411557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:2411557G>A	uc002wfy.1	+	12	1912	c.1851G>A	c.(1849-1851)ATG>ATA	p.M617I	TGM6_uc010gal.1_Intron	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	617					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCCCAGCCATGGTGGGAGTGG	0.597													77	186					0	0	0.014410	0	0
ADAM33	80332	broad.mit.edu	37	20	3655422	3655422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:3655422C>T	uc002wit.2	-	5	495	c.408G>A	c.(406-408)ATG>ATA	p.M136I	ADAM33_uc002wir.1_Missense_Mutation_p.M136I|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.M136I|ADAM33_uc002wiw.1_RNA|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.M148I|ADAM33_uc010zqh.1_Missense_Mutation_p.M136I	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	136	Extracellular (Potential).|Cysteine switch (By similarity).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GAGCTCACCTCATCCCAGAGC	0.632													32	85					0	0	0.017118	0	0
PROKR2	128674	broad.mit.edu	37	20	5294770	5294770	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:5294770C>T	uc010zqw.1	-	1	246	c.246G>A	c.(244-246)AAG>AAA	p.K82K	PROKR2_uc010zqx.1_Silent_p.K82K|PROKR2_uc010zqy.1_Silent_p.K82K|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	82	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TGCGCAACTTCTTATAGCGGG	0.547										HNSCC(71;0.22)			49	126					0	0	0.014410	0	0
FERMT1	55612	broad.mit.edu	37	20	6100135	6100135	+	Missense_Mutation	SNP	C	T	T	rs1056137		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:6100135C>T	uc002wmr.2	-	2	856	c.67G>A	c.(67-69)GAA>AAA	p.E23K	FERMT1_uc010gbt.2_5'UTR|FERMT1_uc002wms.2_Missense_Mutation_p.E23K	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	23					cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TGCTGCTCTTCATTGGGATGG	0.468													42	78					0	0	0.007835	0	0
PLCB1	23236	broad.mit.edu	37	20	8630085	8630085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:8630085C>T	uc002wnb.2	+	7	586	c.583C>T	c.(583-585)CCA>TCA	p.P195S	PLCB1_uc010zrb.1_Missense_Mutation_p.P94S|PLCB1_uc010gbv.1_Missense_Mutation_p.P195S|PLCB1_uc002wmz.1_Missense_Mutation_p.P195S|PLCB1_uc002wna.2_Missense_Mutation_p.P195S|PLCB1_uc002wnc.1_Missense_Mutation_p.P94S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	195					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TTGTAGTCTTCCATCTTCAAG	0.269													36	69					0	0	0.027894	0	0
PLCB1	23236	broad.mit.edu	37	20	8665694	8665694	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:8665694C>T	uc002wnb.2	+	10	981	c.978C>T	c.(976-978)TTC>TTT	p.F326F	PLCB1_uc010zrb.1_Silent_p.F225F|PLCB1_uc002wna.2_Silent_p.F326F|PLCB1_uc002wnc.1_Silent_p.F225F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	326	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTCACTATTTCATTAATTCCT	0.413													81	223					0	0	0.014410	0	0
PLCB1	23236	broad.mit.edu	37	20	8714011	8714011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:8714011G>A	uc002wnb.2	+	19	2018	c.2015G>A	c.(2014-2016)GGG>GAG	p.G672E	PLCB1_uc010zrb.1_Missense_Mutation_p.G571E|PLCB1_uc002wna.2_Missense_Mutation_p.G672E|PLCB1_uc002wnc.1_Missense_Mutation_p.G571E|PLCB1_uc002wnd.1_Missense_Mutation_p.G249E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	672	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ATCGTAGATGGGATAGTGGCA	0.403													35	85					0	0	0.025465	0	0
PLCB1	23236	broad.mit.edu	37	20	8769290	8769290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:8769290G>A	uc002wnb.2	+	29	3202	c.3199G>A	c.(3199-3201)GAA>AAA	p.E1067K	PLCB1_uc002wna.2_Missense_Mutation_p.E1067K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1067					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AGAAAAGAAAGAATTAAAGAA	0.343													7	18					0	0	0.001984	0	0
PLCB4	5332	broad.mit.edu	37	20	9376218	9376218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:9376218C>T	uc002wnf.2	+	18	1599	c.1463C>T	c.(1462-1464)TCC>TTC	p.S488F	PLCB4_uc010gbw.1_Missense_Mutation_p.S488F|PLCB4_uc010gbx.2_Missense_Mutation_p.S488F|PLCB4_uc002wne.2_Missense_Mutation_p.S488F|PLCB4_uc002wnh.2_Missense_Mutation_p.S335F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	488					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GAATCTGCCTCCCCAGCAAAC	0.393													21	64					0	0	0.016522	0	0
PLCB4	5332	broad.mit.edu	37	20	9449219	9449219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:9449219G>A	uc002wnf.2	+	34	3350	c.3214G>A	c.(3214-3216)GAA>AAA	p.E1072K	PLCB4_uc010gbx.2_Missense_Mutation_p.E1084K|PLCB4_uc002wne.2_Missense_Mutation_p.E1072K|PLCB4_uc002wnh.2_Missense_Mutation_p.E919K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1072					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AATACATAGGGAAAGCAAGGA	0.239													39	85					0	0	0.014410	0	0
C20orf103	24141	broad.mit.edu	37	20	9510442	9510442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:9510442G>A	uc002wni.1	+	6	1047	c.818G>A	c.(817-819)AGA>AAA	p.R273K	C20orf103_uc010zrc.1_Missense_Mutation_p.R229K	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	273	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CCTCGGGACAGATCCCAGTAT	0.527													12	82					0	0	0.020292	0	0
PAK7	57144	broad.mit.edu	37	20	9560930	9560930	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:9560930C>T	uc002wnl.2	-	5	1397	c.852G>A	c.(850-852)CAG>CAA	p.Q284Q	PAK7_uc002wnk.2_Silent_p.Q284Q|PAK7_uc002wnj.2_Silent_p.Q284Q|PAK7_uc010gby.1_Silent_p.Q284Q	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	284	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ACCTGGACCTCTGCCGCATGG	0.542													46	121					0	0	0.013114	0	0
KIF16B	55614	broad.mit.edu	37	20	16407881	16407881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:16407881G>A	uc002wpg.1	-	15	1638	c.1480C>T	c.(1480-1482)CAT>TAT	p.H494Y	KIF16B_uc010gch.1_Missense_Mutation_p.H494Y|KIF16B_uc010gci.1_Missense_Mutation_p.H494Y|KIF16B_uc010gcj.1_Missense_Mutation_p.H494Y	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	494	FHA.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TCAAGGCCATGAAGAACTAAA	0.398													24	41					0	0	0.024334	0	0
OTOR	56914	broad.mit.edu	37	20	16729070	16729070	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:16729070C>T	uc002wpj.2	+	1	68	c.24C>T	c.(22-24)TTC>TTT	p.F8F	OTOR_uc002wpk.2_5'Flank	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	8					sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						TGTTACTTTTCCTCCCGGGTC	0.443													72	164					0	0	0.014410	0	0
ZNF133	7692	broad.mit.edu	37	20	18296038	18296038	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:18296038C>T	uc010gcq.2	+	5	848	c.543C>T	c.(541-543)CTC>CTT	p.L181L	ZNF133_uc010zrv.1_Silent_p.L184L|ZNF133_uc010zrw.1_Silent_p.L118L|ZNF133_uc010gcr.2_Silent_p.L181L|ZNF133_uc010zrx.1_Silent_p.L86L|ZNF133_uc002wql.3_Silent_p.L180L|ZNF133_uc010gcs.2_Silent_p.L180L|ZNF133_uc010zry.1_Silent_p.L86L|ZNF133_uc002wqm.2_Silent_p.L181L	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	181						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GGAACGGCCTCAGAGGGGTGG	0.532													61	139					0	0	0.014410	0	0
C20orf26	26074	broad.mit.edu	37	20	20232323	20232323	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:20232323C>T	uc002wru.2	+	20	2320	c.2244C>T	c.(2242-2244)GAC>GAT	p.D748D	C20orf26_uc010zse.1_Silent_p.D728D|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Silent_p.D104D	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	748										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CCGGCATAGACCGAGCAGCCA	0.542													83	157					0	0	0.014410	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20563868	20563868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:20563868C>T	uc002wrz.2	-	20	2676	c.2533G>A	c.(2533-2535)GAA>AAA	p.E845K	RALGAPA2_uc010gcx.2_Missense_Mutation_p.E549K|RALGAPA2_uc010zsg.1_Missense_Mutation_p.E293K	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	845					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TTGGTACTTTCACCTGGTACA	0.428													12	32					0	0	0.020292	0	0
FOXA2	3170	broad.mit.edu	37	20	22563277	22563277	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:22563277G>A	uc002wsn.2	-	3	775	c.585C>T	c.(583-585)TTC>TTT	p.F195F	FOXA2_uc002wsm.2_Silent_p.F201F	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	195	Fork-head.				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					TCTGCCGGTAGAAGGGGAAGA	0.597													49	147					0	0	0.014410	0	0
CST1	1469	broad.mit.edu	37	20	23731432	23731432	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:23731432C>T	uc002wtp.2	-	1	143	c.72G>A	c.(70-72)AAG>AAA	p.K24K		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	24						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					TATCCTCCTCCTTGGGGCTCC	0.577													21	65					0	0	0.012319	0	0
MYLK2	85366	broad.mit.edu	37	20	30408016	30408016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:30408016C>T	uc002wwq.2	+	3	242	c.140C>T	c.(139-141)CCA>CTA	p.P47L		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	47					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GCTCCGGATCCACCCACCCTG	0.597													42	96					0	0	0.009718	0	0
C20orf71	128861	broad.mit.edu	37	20	31814248	31814248	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:31814248C>T	uc002wyr.2	+	5	781	c.573C>T	c.(571-573)AAC>AAT	p.N191N	C20orf71_uc002wys.2_Silent_p.N155N	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	191						extracellular region	lipid binding			ovary(1)|skin(1)	2						TTCTCTACAACCTCAAAGAGA	0.418													34	68					0	0	0.023175	0	0
RALY	22913	broad.mit.edu	37	20	32663679	32663680	+	Splice_Site	DNP	GG	TA	TA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:32663679_32663680GG>TA	uc002xab.2	+	6	676	c.378_splice	c.e6-1	p.R126_splice	RALY_uc002xac.2_Splice_Site_p.R110_splice|RALY_uc002xad.2_Splice_Site|RALY_uc002xae.1_Splice_Site_p.R126_splice	NM_016732	NP_057951	Q9UKM9	RALY_HUMAN	RNA binding protein (autoantigenic,							catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(1)	1						TGCCCTCACAGGCTCTTCGACT	0.658													10	26					0	0	0.004672	0	0
ACSS2	55902	broad.mit.edu	37	20	33513985	33513985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:33513985C>T	uc002xbd.2	+	16	1925	c.1804C>T	c.(1804-1806)CAC>TAC	p.H602Y	ACSS2_uc002xbc.2_Missense_Mutation_p.H507Y|ACSS2_uc010zum.1_RNA|ACSS2_uc010gey.2_Missense_Mutation_p.H615Y|ACSS2_uc002xbe.2_Missense_Mutation_p.H310Y|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	602					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TGTGGTGGGCCACCCTCATCC	0.562													38	101					0	0	0.021022	0	0
MYH7B	57644	broad.mit.edu	37	20	33567524	33567524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:33567524G>A	uc010gfa.1	+	4	380	c.259G>A	c.(259-261)GAG>AAG	p.E87K	MYH7B_uc002xbi.1_Missense_Mutation_p.E129K			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	87	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CGACTTACTGGAGGACATGGC	0.647													45	96					0	0	0.011902	0	0
MYH7B	57644	broad.mit.edu	37	20	33568445	33568445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:33568445C>T	uc010gfa.1	+	5	528	c.407C>T	c.(406-408)TCC>TTC	p.S136F	MYH7B_uc002xbi.1_Missense_Mutation_p.S178F			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	136	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TATACGGCCTCCGTAGTGGCT	0.522													83	258					0	0	0.014410	0	0
DLGAP4	22839	broad.mit.edu	37	20	35075302	35075302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:35075302C>T	uc002xff.2	+	7	2045	c.1610C>T	c.(1609-1611)CCC>CTC	p.P537L	DLGAP4_uc010zvp.1_Missense_Mutation_p.P537L	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	537					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TCCCCACCGCCCAGTACCGGC	0.602													14	68					0	0	0.004990	0	0
C20orf117	140710	broad.mit.edu	37	20	35431485	35431485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:35431485G>A	uc002xgd.1	-	11	2726	c.2399C>T	c.(2398-2400)GCC>GTC	p.A800V	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	800											0		Myeloproliferative disorder(115;0.00874)				CCGCTCCCCGGCCCCCTTCCC	0.642													12	23					0	0	0.016723	0	0
VSTM2L	128434	broad.mit.edu	37	20	36560103	36560103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:36560103C>T	uc002xhk.3	+	2	442	c.188C>T	c.(187-189)TCC>TTC	p.S63F		NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like	63	Ig-like.									ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				ATGGCCTGCTCCTTCCGCGGC	0.642													99	222					0	0	0.014410	0	0
PTPRT	11122	broad.mit.edu	37	20	40944528	40944528	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:40944528G>A	uc002xkg.2	-	12	2158	c.1974C>T	c.(1972-1974)CTC>CTT	p.L658L	PTPRT_uc010ggj.2_Silent_p.L658L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	658	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTAGAGAATCGAGGCTGGAGG	0.517													43	123					0	0	0.014410	0	0
PTPRT	11122	broad.mit.edu	37	20	41400150	41400150	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:41400150C>T	uc002xkg.2	-	5	793	c.609G>A	c.(607-609)GTG>GTA	p.V203V	PTPRT_uc010ggj.2_Silent_p.V203V	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	203	Extracellular (Potential).|Ig-like C2-type.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCCCACATTCACCTCCACGT	0.493													46	151					0	0	0.014410	0	0
TOX2	84969	broad.mit.edu	37	20	42635286	42635286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:42635286G>A	uc002xlf.3	+	3	309	c.292G>A	c.(292-294)GAA>AAA	p.E98K	TOX2_uc010ggo.2_Missense_Mutation_p.E89K|TOX2_uc002xle.3_Missense_Mutation_p.E47K|TOX2_uc010ggp.2_Missense_Mutation_p.E47K|TOX2_uc002xlg.2_Missense_Mutation_p.E47K	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	98	Required for transcriptional activation (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GGGGGACCACGAAGCCAGCTA	0.617													28	94					0	0	0.007291	0	0
TOX2	84969	broad.mit.edu	37	20	42694607	42694607	+	Silent	SNP	C	T	T	rs141373012	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:42694607C>T	uc002xlf.3	+	6	1179	c.1162C>T	c.(1162-1164)CTG>TTG	p.L388L	TOX2_uc010ggo.2_Silent_p.L406L|TOX2_uc002xle.3_Silent_p.L364L|TOX2_uc010ggp.2_Silent_p.L364L|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Silent_p.L284L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	388	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GCACCAGCAGCTGTCACTGCC	0.716													29	58					0	0	0.007291	0	0
KCNK15	60598	broad.mit.edu	37	20	43379087	43379087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:43379087G>A	uc002xmr.2	+	2	665	c.601G>A	c.(601-603)GGC>AGC	p.G201S		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	201						integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				CACCACCATCGGCTTCGGCGA	0.647													41	142					0	0	0.013114	0	0
SEMG2	6407	broad.mit.edu	37	20	43850988	43850988	+	Missense_Mutation	SNP	C	T	T	rs150189412	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:43850988C>T	uc010ggz.2	+	2	772	c.715C>T	c.(715-717)CAT>TAT	p.H239Y	SEMG2_uc002xnk.2_Missense_Mutation_p.H239Y|SEMG2_uc002xnl.2_Missense_Mutation_p.H239Y	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	239	2-2.|Repeat-rich region.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				AACTTCACTCCATCCTGCACA	0.378													71	149					0	0	0.014410	0	0
SEMG2	6407	broad.mit.edu	37	20	43851542	43851542	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:43851542G>A	uc010ggz.2	+	2	1326	c.1269G>A	c.(1267-1269)AAG>AAA	p.K423K	SEMG2_uc002xnk.2_Silent_p.K423K|SEMG2_uc002xnl.2_Intron	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	423	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GTGGAGAAAAGGATGTACAGA	0.373													39	74					0	0	0.027894	0	0
DNTTIP1	116092	broad.mit.edu	37	20	44430653	44430653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:44430653C>T	uc002xpk.2	+	7	582	c.514C>T	c.(514-516)CCT>TCT	p.P172S		NM_052951	NP_443183	Q9H147	TDIF1_HUMAN	terminal deoxynucleotidyltransferase interacting	172						nucleus				ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.0122)				AGGACGGCCTCCTGGACACAT	0.602													42	124					0	0	0.013114	0	0
EYA2	2139	broad.mit.edu	37	20	45717957	45717957	+	Silent	SNP	G	A	A	rs143429707	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:45717957G>A	uc002xsm.2	+	8	1115	c.741G>A	c.(739-741)GGG>GGA	p.G247G	EYA2_uc010ghp.2_Silent_p.G247G|EYA2_uc002xsn.2_Silent_p.G252G|EYA2_uc002xso.2_Silent_p.G247G|EYA2_uc002xsp.2_Silent_p.G247G|EYA2_uc002xsq.2_Silent_p.G247G	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	247					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CCTCCGACGGGAAGCTCCGAG	0.577													57	125					0	0	0.014410	0	0
CSE1L	1434	broad.mit.edu	37	20	47686748	47686748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:47686748C>T	uc002xty.2	+	8	816	c.682C>T	c.(682-684)CCT>TCT	p.P228S	CSE1L_uc010zyg.1_Missense_Mutation_p.P11S|CSE1L_uc010ghx.2_Missense_Mutation_p.P228S|CSE1L_uc010ghy.2_5'Flank|CSE1L_uc010zyh.1_5'Flank	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	228					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			GTAGGATCTCCCTGAATTTTT	0.279													31	98					0	0	0.009535	0	0
DDX27	55661	broad.mit.edu	37	20	47850127	47850127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:47850127C>T	uc002xuh.2	+	11	1308	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	416	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCTTCTGTCTCCTTGAAGAAT	0.542													102	249					0	0	0.014410	0	0
FAM65C	140876	broad.mit.edu	37	20	49225247	49225247	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:49225247C>T	uc002xvm.2	-	10	1019	c.701G>A	c.(700-702)TGG>TAG	p.W234*	FAM65C_uc010zyt.1_Nonsense_Mutation_p.W238*|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Nonsense_Mutation_p.W234*	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	234										ovary(2)	2						CTTGAGCTTCCAACGCTGGCG	0.647													65	159					0	0	0.014410	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870393	51870393	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:51870393C>T	uc002xwo.2	+	2	1352	c.396C>T	c.(394-396)ATC>ATT	p.I132I		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	132					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ACGCCAACATCCTGTCGGATT	0.522													34	91					0	0	0.015359	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871953	51871953	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:51871953G>A	uc002xwo.2	+	2	2912	c.1956G>A	c.(1954-1956)AAG>AAA	p.K652K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	652					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTCCCCTGAAGGAGGAGGAGA	0.582													24	93					0	0	0.021523	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872320	51872320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:51872320G>A	uc002xwo.2	+	2	3279	c.2323G>A	c.(2323-2325)GCC>ACC	p.A775T		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	775					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AAGCAAGAAAGCCGAGTCCTC	0.562													69	165					0	0	0.014410	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872956	51872956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:51872956G>A	uc002xwo.2	+	2	3915	c.2959G>A	c.(2959-2961)GAA>AAA	p.E987K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	987					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AATAGCTGCCGAAGAGGACAC	0.502													37	81					0	0	0.019004	0	0
BCAS1	8537	broad.mit.edu	37	20	52601869	52601869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:52601869G>A	uc002xws.2	-	7	1435	c.1097C>T	c.(1096-1098)TCA>TTA	p.S366L	BCAS1_uc010zza.1_Missense_Mutation_p.S124L|BCAS1_uc010zzb.1_Missense_Mutation_p.S314L|BCAS1_uc010gim.2_Missense_Mutation_p.S314L|BCAS1_uc002xwt.2_Missense_Mutation_p.S366L|BCAS1_uc010gil.1_Missense_Mutation_p.S366L	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	366						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GGTGGGTCCTGATTTCTCCTT	0.537													39	130					0	0	0.025465	0	0
CASS4	57091	broad.mit.edu	37	20	55027248	55027248	+	Missense_Mutation	SNP	G	A	A	rs149703805	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:55027248G>A	uc002xxp.2	+	6	1241	c.1016G>A	c.(1015-1017)CGA>CAA	p.R339Q	CASS4_uc002xxq.3_Missense_Mutation_p.R339Q|CASS4_uc002xxr.2_Missense_Mutation_p.R339Q|CASS4_uc010zze.1_Missense_Mutation_p.R285Q|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	339					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CTGATTCCCCGAGTGGAACAG	0.473													51	98					0	0	0.014410	0	0
CASS4	57091	broad.mit.edu	37	20	55033727	55033727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:55033727C>T	uc002xxp.2	+	7	2510	c.2285C>T	c.(2284-2286)GCC>GTC	p.A762V	CASS4_uc002xxr.2_Missense_Mutation_p.A762V|CASS4_uc010zze.1_Missense_Mutation_p.A708V|CASS4_uc010gio.2_Missense_Mutation_p.A325V	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	762					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CCCAGCCCTGCCGCGCTGGGG	0.637													12	36					0	0	0.010729	0	0
ZNF831	128611	broad.mit.edu	37	20	57767866	57767866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:57767866G>A	uc002yan.2	+	1	1792	c.1792G>A	c.(1792-1794)GGC>AGC	p.G598S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	598						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGCCATGGCCGGCAAGGGCAG	0.647													33	88					0	0	0.012213	0	0
ZNF831	128611	broad.mit.edu	37	20	57829536	57829536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:57829536C>T	uc002yan.2	+	5	4772	c.4772C>T	c.(4771-4773)CCT>CTT	p.P1591L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1591						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACGTTTTTTCCTTCCAGAGGC	0.478													29	81					0	0	0.007291	0	0
ZNF831	128611	broad.mit.edu	37	20	57829649	57829649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:57829649C>T	uc002yan.2	+	5	4885	c.4885C>T	c.(4885-4887)CCT>TCT	p.P1629S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1629						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TTCTGTGGTTCCTTCTAAGCC	0.478													17	51					0	0	0.028581	0	0
PHACTR3	116154	broad.mit.edu	37	20	58381164	58381164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:58381164G>A	uc002yau.2	+	8	1710	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K	PHACTR3_uc002yat.2_Missense_Mutation_p.E412K|PHACTR3_uc010zzw.1_Missense_Mutation_p.E374K|PHACTR3_uc002yav.2_Missense_Mutation_p.E374K|PHACTR3_uc002yaw.2_Missense_Mutation_p.E374K|PHACTR3_uc002yax.2_Missense_Mutation_p.E304K	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	415	RPEL 2.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			AAGCAAACAGGAACTAGAAGA	0.517													96	261					0	0	0.014410	0	0
CDH26	60437	broad.mit.edu	37	20	58558072	58558072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:58558072C>T	uc002ybe.2	+	5	788	c.488C>T	c.(487-489)CCC>CTC	p.P163L	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	163	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GATCATGCACCCCAGTTTCCA	0.463													82	221					0	0	0.014410	0	0
CDH26	60437	broad.mit.edu	37	20	58564175	58564175	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:58564175C>T	uc002ybe.2	+	9	1540	c.1240C>T	c.(1240-1242)CTG>TTG	p.L414L	CDH26_uc002ybf.1_5'UTR|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	414	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GCCTGGGACCCTGTTGGGAAC	0.537													182	480					0	0	0.014410	0	0
MIR646	693231	broad.mit.edu	37	20	58883550	58883550	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:58883550G>A	hsa-mir-646|MI0003661	+			c.19G>A			uc002ybl.2_Intron|uc010gjw.1_Intron																	0						gtctgccagtggagtcagcac	0													26	46					0	0	0.006320	0	0
TAF4	6874	broad.mit.edu	37	20	60574056	60574056	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:60574056G>A	uc002ybs.2	-	12	2896	c.2896C>T	c.(2896-2898)CTG>TTG	p.L966L		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	966					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GCCCTCATCAGGATCTCCCGC	0.557													163	385					0	0	0.014410	0	0
LAMA5	3911	broad.mit.edu	37	20	60909353	60909354	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:60909353_60909354CA>AT	uc002ycq.2	-	22	2694_2695	c.2627_2628TG>AT	c.(2626-2628)CTG>CAT	p.L876H		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	876	Domain IV 1 (domain IV B).				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTCCAGCTCCAGGCGCAGGTG	0.663													6	24					0	0	0.004672	0	0
COL9A3	1299	broad.mit.edu	37	20	61467656	61467656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:61467656C>T	uc002ydm.2	+	28	1522	c.1519C>T	c.(1519-1521)CCT>TCT	p.P507S	COL9A3_uc002ydn.2_5'Flank	NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	507	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CCCGGGTGTTCCTGGCATCAC	0.637													35	95					0	0	0.008740	0	0
DIDO1	11083	broad.mit.edu	37	20	61525489	61525489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:61525489G>A	uc002ydr.1	-	12	2894	c.2630C>T	c.(2629-2631)TCT>TTT	p.S877F	DIDO1_uc002yds.1_Missense_Mutation_p.S877F|DIDO1_uc002ydt.1_Missense_Mutation_p.S877F|DIDO1_uc002ydu.1_Missense_Mutation_p.S877F	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	877					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TTTCTTAACAGAAGCTGACAA	0.512													73	249					0	0	0.014410	0	0
COL20A1	57642	broad.mit.edu	37	20	61939428	61939428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:61939428G>A	uc011aau.1	+	7	861	c.761G>A	c.(760-762)GGG>GAG	p.G254E	COL20A1_uc011aav.1_Missense_Mutation_p.G75E	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	254	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TACAAGGGGGGGAACACGTTC	0.627													13	66					0	0	0.024245	0	0
PRIC285	85441	broad.mit.edu	37	20	62195150	62195150	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:62195150G>A	uc002yfm.2	-	9	5917	c.5025C>T	c.(5023-5025)ATC>ATT	p.I1675I	PRIC285_uc002yfl.1_Silent_p.I1106I	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1675					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGTACCTGCGGATGGGCGAGG	0.701													10	25					0	0	0.010729	0	0
PCMTD2	55251	broad.mit.edu	37	20	62904952	62904952	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr20:62904952A>T	uc002yil.3	+	6	1285	c.1085A>T	c.(1084-1086)TAA>TTA	p.*362L	PCMTD2_uc002yim.3_Nonstop_Mutation_p.*335L	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	362						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGAGAAAAATAAGTCTCCTGT	0.502													47	146					0	0	0.014410	0	0
TPTE	7179	broad.mit.edu	37	21	10944679	10944679	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:10944679C>T	uc002yip.1	-	11	923	c.555G>A	c.(553-555)AGG>AGA	p.R185R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.R167R|TPTE_uc002yir.1_Silent_p.R147R|TPTE_uc010gkv.1_Silent_p.R47R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	185					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGGAATATTCCTAAGCAACT	0.284													28	197					0	0	0.027356	0	0
TPTE	7179	broad.mit.edu	37	21	10998260	10998260	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:10998260C>T	uc002yis.1	-	11		c.1993G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCCTTCCACTCCCTTAGTTTC	0.388													40	170					0	0	0.007835	0	0
BAGE2	85319	broad.mit.edu	37	21	11097588	11097588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:11097588G>A	uc002yit.1	-	2	282	c.74C>T	c.(73-75)CCT>CTT	p.P25L	BAGE_uc002yix.2_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		gctcaccacaggggactcctc	0.134													6	140					0	0	0.003080	0	0
LIPI	149998	broad.mit.edu	37	21	15561499	15561499	+	Silent	SNP	G	A	A	rs148528170	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:15561499G>A	uc002yjm.2	-	2	361	c.351C>T	c.(349-351)TTC>TTT	p.F117F	LIPI_uc010gkw.1_Silent_p.F50F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	96					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		AAATCCTTACGAAGTTCTGAA	0.368													31	77					0	0	0.009535	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19716332	19716332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:19716332C>T	uc002ykw.2	-	11	1248	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	406	Extracellular (Potential).|MAM.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						AAGCCCCACTCGTTCTTGTCT	0.383													67	165					0	0	0.014410	0	0
NCAM2	4685	broad.mit.edu	37	21	22652919	22652919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:22652919C>T	uc002yld.1	+	2	326	c.77C>T	c.(76-78)TCA>TTA	p.S26L	NCAM2_uc011acb.1_Intron|NCAM2_uc011acc.1_Missense_Mutation_p.S51L	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	26	Ig-like C2-type 1.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GTGACAATTTCACTTAGCAAA	0.323													11	18					0	0	0.016723	0	0
KRTAP24-1	643803	broad.mit.edu	37	21	31654514	31654514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:31654514C>T	uc002ynv.2	-	1	763	c.737G>A	c.(736-738)AGT>AAT	p.S246N		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	246	6 X 10 AA repeats of Y-[ILR]-[SVPC]- [NRTS]-[SNTG]-X-[QHRP]-[PSY]-[QSL]-[SRK].|6.					keratin filament	structural molecule activity				0						TCTGCTACCACTGCACAAATA	0.443													32	78					0	0	0.009535	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692313	31692313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:31692313C>T	uc002ynw.2	-	1	295	c.41G>A	c.(40-42)GGA>GAA	p.G14E		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	14						intermediate filament				ovary(1)	1						TCTGAGAGATCCTGAGTTGGA	0.517													6	24					0	0	0.021553	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802664	31802664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:31802664C>T	uc011acw.1	+	1	71	c.71C>T	c.(70-72)TCC>TTC	p.S24F		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	24						intermediate filament					0						TACCCAGGCTCCTACCCCAGC	0.582													50	142					0	0	0.014410	0	0
SFRS15	57466	broad.mit.edu	37	21	33074204	33074204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:33074204G>A	uc002ypd.2	-	6	911	c.485C>T	c.(484-486)TCT>TTT	p.S162F	SFRS15_uc002ype.2_Missense_Mutation_p.S162F|SFRS15_uc010glu.2_Missense_Mutation_p.S147F|SFRS15_uc002ypf.1_5'UTR|SFRS15_uc002ypg.2_Missense_Mutation_p.S162F	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	162						nucleus	nucleotide binding|RNA binding				0						AGGTTCAGAAGAAACTTTTAC	0.448													20	51					0	0	0.008871	0	0
IFNAR2	3455	broad.mit.edu	37	21	34635620	34635620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:34635620G>A	uc002yrd.2	+	9	1691	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K	IFNAR2_uc002yre.2_Missense_Mutation_p.E455K|IFNAR2_uc002yrf.2_3'UTR|IL10RB_uc002yrh.1_Intron|IL10RB_uc002yri.1_Intron	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	455	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TCATCTGGAAGAGATGGTTGA	0.498													143	380					0	0	0.014410	0	0
ITSN1	6453	broad.mit.edu	37	21	35186232	35186232	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:35186232G>A	uc002yta.1	+	22	2851	c.2583G>A	c.(2581-2583)ACG>ACA	p.T861T	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Silent_p.T856T|ITSN1_uc010gmg.2_Silent_p.T819T|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Silent_p.T861T|ITSN1_uc010gmi.2_Silent_p.T824T|ITSN1_uc010gmj.2_Silent_p.T740T|ITSN1_uc002ysy.2_Silent_p.T856T|ITSN1_uc002ysx.2_Silent_p.T819T|ITSN1_uc002ytb.1_Silent_p.T856T|ITSN1_uc002ytc.1_Silent_p.T856T|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Silent_p.T824T|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Silent_p.T856T|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Silent_p.T795T|ITSN1_uc002ytf.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	861					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CCACCAGCACGAATGAGAAAC	0.498													21	73					0	0	0.010504	0	0
SLC5A3	6526	broad.mit.edu	37	21	35468163	35468163	+	Silent	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:35468163C>A	uc002yto.2	+	2	1178	c.666C>A	c.(664-666)CCC>CCA	p.P222P	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	222	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						TGGCCTCACCCGATGTCACTT	0.428													45	116					1.23103e-26	1.25593e-26	0.013114	1	0
SLC5A3	6526	broad.mit.edu	37	21	35468784	35468784	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:35468784C>T	uc002yto.2	+	2	1799	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	429	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						TGCCAATCATCGTGGAGATGC	0.502													42	122					0	0	0.011902	0	0
TTC3	7267	broad.mit.edu	37	21	38524310	38524310	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:38524310C>T	uc002yvz.2	+	26	2499	c.2394C>T	c.(2392-2394)CCC>CCT	p.P798P	TTC3_uc011aee.1_Silent_p.P488P|TTC3_uc002ywa.2_Silent_p.P798P|TTC3_uc002ywb.2_Silent_p.P798P|TTC3_uc010gnf.2_Silent_p.P563P|TTC3_uc002ywc.2_Silent_p.P488P|TTC3_uc011aed.1_Silent_p.P488P	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	798					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GTAATCCACCCAAAAATGAAG	0.323													54	173					0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41719705	41719705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:41719705C>T	uc002yyq.1	-	6	1554	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	368	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATAAGGTTTTCGTGGTTGATC	0.512													76	286					0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41725649	41725649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:41725649G>A	uc002yyq.1	-	5	1129	c.677C>T	c.(676-678)TCC>TTC	p.S226F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	226	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATCCAGTATGGATGGGGCTGA	0.512													9	14					0	0	0.006214	0	0
FAM3B	54097	broad.mit.edu	37	21	42694869	42694869	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:42694869C>T	uc002yzb.1	+	2	185	c.39C>T	c.(37-39)TTC>TTT	p.F13F	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Intron|FAM3B_uc002yzd.1_Silent_p.F36F|FAM3B_uc011aeq.1_Silent_p.F27F	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	13					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				AGGTGGTGTTCGTGGTCTTCG	0.627													35	113					0	0	0.023175	0	0
RIPK4	54101	broad.mit.edu	37	21	43176946	43176946	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:43176946C>T	uc002yzn.1	-	2	261	c.213G>A	c.(211-213)AAG>AAA	p.K71K		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	71						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						TCTCCATCTTCTTGGCTTCTT	0.537													27	68					0	0	0.027356	0	0
UMODL1	89766	broad.mit.edu	37	21	43505421	43505421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:43505421G>A	uc002zaf.1	+	4	502	c.502G>A	c.(502-504)GGC>AGC	p.G168S	UMODL1_uc002zad.1_Missense_Mutation_p.G96S|UMODL1_uc002zae.1_Missense_Mutation_p.G96S|UMODL1_uc002zag.1_Missense_Mutation_p.G168S|UMODL1_uc010gow.1_5'UTR|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_5'UTR|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_5'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	168	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGACCCTGTGGGCTCCTGGTA	0.542													57	203					0	0	0.014410	0	0
UMODL1	89766	broad.mit.edu	37	21	43547287	43547287	+	Silent	SNP	G	A	A	rs147967794	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:43547287G>A	uc002zaf.1	+	19	3465	c.3465G>A	c.(3463-3465)ACG>ACA	p.T1155T	UMODL1_uc002zad.1_Silent_p.T1083T|UMODL1_uc002zae.1_Silent_p.T1211T|UMODL1_uc002zag.1_Silent_p.T1283T|UMODL1_uc002zal.1_Silent_p.T105T|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1155	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGGTCCTGACGGAGTGCTGGG	0.567													30	120					0	0	0.007291	0	0
TFF1	7031	broad.mit.edu	37	21	43783485	43783485	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:43783485C>T	uc002zax.1	-	2	157	c.117G>A	c.(115-117)CAG>CAA	p.Q39Q		NM_003225	NP_003216	P04155	TFF1_HUMAN	trefoil factor 1 precursor	39	P-type.				carbohydrate metabolic process|response to estradiol stimulus		growth factor activity				0						AACCACAATTCTGTCTTTCAC	0.507													24	68					0	0	0.021523	0	0
RRP1B	23076	broad.mit.edu	37	21	45096182	45096182	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45096182C>T	uc002zdk.2	+	7	693	c.579C>T	c.(577-579)ATC>ATT	p.I193I		NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	193					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		TCAAGTTTATCGATCCATTCT	0.438													57	115					0	0	0.014410	0	0
DNMT3L	29947	broad.mit.edu	37	21	45679415	45679415	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45679415G>A	uc002zeg.1	-	5	733	c.249C>T	c.(247-249)GCC>GCT	p.A83A	DNMT3L_uc002zeh.1_Silent_p.A83A	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	83	ADD.				DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		ACAGGAAGAGGGCATCCAGGA	0.592													44	108					0	0	0.014410	0	0
TRPM2	7226	broad.mit.edu	37	21	45833845	45833845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45833845G>A	uc002zet.1	+	21	3247	c.3034G>A	c.(3034-3036)GAC>AAC	p.D1012N	TRPM2_uc002zeu.1_Missense_Mutation_p.D1012N|TRPM2_uc002zew.1_Missense_Mutation_p.D1012N|TRPM2_uc010gpt.1_Missense_Mutation_p.D1012N|TRPM2_uc002zex.1_Missense_Mutation_p.D798N|TRPM2_uc002zey.1_Missense_Mutation_p.D525N	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1012	Extracellular (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCCGAGAGCGACGCGACGCA	0.627													137	468					0	0	0.014410	0	0
C21orf29	54084	broad.mit.edu	37	21	45949736	45949736	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45949736G>A	uc002zfe.1	-	5	801	c.735C>T	c.(733-735)GTC>GTT	p.V245V	C21orf29_uc010gpv.1_Silent_p.V177V	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	245					cell adhesion	extracellular region	structural molecule activity				0						GAGCCTGCAGGACCCGTGGGA	0.637													22	86					0	0	0.016522	0	0
C21orf29	54084	broad.mit.edu	37	21	45949744	45949744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45949744G>A	uc002zfe.1	-	5	793	c.727C>T	c.(727-729)CCA>TCA	p.P243S	C21orf29_uc010gpv.1_Missense_Mutation_p.P175S	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	243					cell adhesion	extracellular region	structural molecule activity				0						AGGACCCGTGGGATGGACAGC	0.637													29	72					0	0	0.015359	0	0
C21orf29	54084	broad.mit.edu	37	21	45949818	45949818	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:45949818A>T	uc002zfe.1	-	5	719	c.653T>A	c.(652-654)GTC>GAC	p.V218D	C21orf29_uc010gpv.1_Missense_Mutation_p.V150D	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	218	TSP N-terminal.				cell adhesion	extracellular region	structural molecule activity				0						CGGCAGCAGGACCAGTTGCCT	0.692													8	32					0	0	0.003080	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067169	46067169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46067169C>T	uc002zfr.3	+	1	839	c.794C>T	c.(793-795)TCC>TTC	p.S265F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	265	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						TCCTGCCAGTCCAGCTGCTGC	0.692													50	112					0	0	0.014410	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086797	46086797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46086797G>A	uc002zfu.2	-	1	48	c.7C>T	c.(7-9)CAT>TAT	p.H3Y	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	3						keratin filament					0						CAGCTGGTATGACACATGGTG	0.667													13	30					0	0	0.020292	0	0
COL18A1	80781	broad.mit.edu	37	21	46876046	46876046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46876046C>T	uc011afs.1	+	1	623	c.602C>T	c.(601-603)CCC>CTC	p.P201L	COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Missense_Mutation_p.P201L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	201					cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTGGGCAGGCCCTGGGCACCA	0.692													23	100					0	0	0.024334	0	0
COL18A1	80781	broad.mit.edu	37	21	46900645	46900645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46900645C>T	uc011afs.1	+	12	2750	c.2729C>T	c.(2728-2730)CCC>CTC	p.P910L	COL18A1_uc002zhg.2_Missense_Mutation_p.P495L|COL18A1_uc002zhi.2_Missense_Mutation_p.P675L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	910	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCTCCCGGACCCCCCGGTGTC	0.701													27	63					0	0	0.006320	0	0
COL18A1	80781	broad.mit.edu	37	21	46916462	46916463	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46916462_46916463AC>TT	uc011afs.1	+	29	3823_3824	c.3802_3803AC>TT	c.(3802-3804)ACT>TTT	p.T1268F	COL18A1_uc002zhg.2_Missense_Mutation_p.T853F|COL18A1_uc002zhi.2_Missense_Mutation_p.T1033F	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1268	Triple-helical region 6 (COL6).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCCTCCAGGGACTCCTGTTTAC	0.644													48	137					0	0	0.004672	0	0
SLC19A1	6573	broad.mit.edu	37	21	46945797	46945797	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:46945797G>A	uc002zhl.1	-	5	1346	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	SLC19A1_uc010gpy.1_Silent_p.I409I|SLC19A1_uc011aft.1_Silent_p.I369I|SLC19A1_uc002zhm.1_Silent_p.I409I|SLC19A1_uc010gpz.1_Silent_p.I288I	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	409	Helical; (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		TGGTCTTGACGATGGTGGCAA	0.577													80	175					0	0	0.014410	0	0
COL6A2	1292	broad.mit.edu	37	21	47531470	47531470	+	Missense_Mutation	SNP	C	T	T	rs150057026		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47531470C>T	uc002zia.1	+	2	162	c.80C>T	c.(79-81)TCG>TTG	p.S27L	COL6A2_uc002zhy.1_Missense_Mutation_p.S27L|COL6A2_uc002zhz.1_Missense_Mutation_p.S27L|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	27	Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GAGGTCATCTCGCCGGACACT	0.667													39	91					0	0	0.013114	0	0
COL6A2	1292	broad.mit.edu	37	21	47542846	47542846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47542846G>A	uc002zia.1	+	21	1748	c.1666G>A	c.(1666-1668)GAG>AAG	p.E556K	COL6A2_uc002zhy.1_Missense_Mutation_p.E556K|COL6A2_uc002zhz.1_Missense_Mutation_p.E556K|COL6A2_uc002zib.1_5'UTR	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	556	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging	p.E556E(1)		central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		AGAGAAAGGAGAGCCTGTGAG	0.602													29	86					0	0	0.012213	0	0
FTCD	10841	broad.mit.edu	37	21	47574103	47574103	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47574103G>A	uc002zif.2	-	2	242	c.198C>T	c.(196-198)GCC>GCT	p.A66A	FTCD_uc002zig.2_Silent_p.A66A|FTCD_uc002zih.2_Silent_p.A66A|FTCD_uc010gqf.2_Silent_p.A66A|FTCD_uc010gqg.1_5'UTR	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	66	Formiminotransferase N-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	AAGCTACCCGGGCAGCGTTGA	0.657													29	112					0	0	0.015359	0	0
PCNT	5116	broad.mit.edu	37	21	47860833	47860833	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47860833G>A	uc002zji.3	+	43	9566	c.9459G>A	c.(9457-9459)AAG>AAA	p.K3153K	PCNT_uc002zjj.2_Silent_p.K2956K	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3153	Interaction with NEK2.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TTTATCAAAAGAAGTATCTTT	0.368													42	143					0	0	0.007835	0	0
DIP2A	23181	broad.mit.edu	37	21	47918537	47918538	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47918537_47918538CC>TT	uc002zjo.2	+	5	629_630	c.446_447CC>TT	c.(445-447)CCC>CTT	p.P149L	DIP2A_uc011afy.1_Missense_Mutation_p.P85L|DIP2A_uc011afz.1_Missense_Mutation_p.P149L|DIP2A_uc002zjl.2_Missense_Mutation_p.P149L|DIP2A_uc002zjm.2_Missense_Mutation_p.P149L|DIP2A_uc010gql.2_Missense_Mutation_p.P149L|DIP2A_uc002zjn.2_Missense_Mutation_p.P149L	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	149					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		TTACGGCGACCCGGGCGACTCA	0.584													100	258					0	0	0.004672	0	0
DIP2A	23181	broad.mit.edu	37	21	47961709	47961709	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr21:47961709C>T	uc002zjo.2	+	18	2260	c.2077C>T	c.(2077-2079)CTG>TTG	p.L693L	DIP2A_uc011afy.1_Silent_p.L629L|DIP2A_uc011afz.1_Silent_p.L689L|DIP2A_uc002zjl.2_Silent_p.L693L|DIP2A_uc002zjm.2_Silent_p.L693L|DIP2A_uc010gql.2_Silent_p.L650L|DIP2A_uc002zjn.2_Silent_p.L693L|DIP2A_uc002zjp.1_Silent_p.L438L|DIP2A_uc002zjq.2_Silent_p.L85L	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	693					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		AAAAGCAGTCCTGTCGATGAA	0.488													33	83					0	0	0.015359	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178790	17178790	+	RNA	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:17178790A>G	uc002zls.1	+	3		c.872A>G								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						ACCCACTTCTAGGAGATGCGC	0.627													15	37					0	0	0.027356	0	0
GAB4	128954	broad.mit.edu	37	22	17445691	17445691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:17445691C>T	uc002zlw.2	-	8	1549	c.1441G>A	c.(1441-1443)GAC>AAC	p.D481N		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	481										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				TCTTCTGAGTCTGTGTTGGTG	0.567													50	106					0	0	0.014410	0	0
TSSK2	23617	broad.mit.edu	37	22	19119041	19119041	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:19119041C>T	uc002zow.2	+	1	721	c.129C>T	c.(127-129)ATC>ATT	p.I43I	DGCR14_uc002zot.2_3'UTR|DGCR14_uc002zou.2_3'UTR|DGCR14_uc002zov.2_RNA	NM_053006	NP_443732	Q96PF2	TSSK2_HUMAN	testis-specific serine kinase 2	43	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1	Colorectal(54;0.0993)					TCAAGATCATCGACCGCAAGA	0.493													45	88					0	0	0.014410	0	0
HIRA	7290	broad.mit.edu	37	22	19346879	19346879	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:19346879G>A	uc002zpf.1	-	18	2434	c.2214C>T	c.(2212-2214)ATC>ATT	p.I738I	HIRA_uc011agx.1_Silent_p.I604I|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Silent_p.I694I|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	738	Interaction with PAX3 (By similarity).|Interaction with histone H2B.|Interaction with histone H4.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					CAGCAGTGAGGATCCGGCTGG	0.632													30	95					0	0	0.019004	0	0
HIRA	7290	broad.mit.edu	37	22	19375274	19375274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:19375274G>A	uc002zpf.1	-	11	1293	c.1073C>T	c.(1072-1074)TCC>TTC	p.S358F	HIRA_uc011agx.1_Missense_Mutation_p.S224F|HIRA_uc010grn.1_Missense_Mutation_p.S358F|HIRA_uc010gro.1_Missense_Mutation_p.S314F|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	358	WD 7.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					CTCATCCTGGGAGAAGTCGAG	0.572													15	28					0	0	0.004990	0	0
VPREB1	7441	broad.mit.edu	37	22	22599708	22599708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:22599708G>A	uc002zvx.1	+	2	423	c.397G>A	c.(397-399)GAA>AAA	p.E133K	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	133					immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		ggagtgggaggaagaaatgga	0.458													8	25					0	0	0.004482	0	0
LOC96610	96610	broad.mit.edu	37	22	22663112	22663112	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:22663112C>T	uc011aim.1	+	29		c.1885C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						TGGATAAATCCATAAAAATTG	0.289													6	23					0	0	0.001984	0	0
LOC96610	96610	broad.mit.edu	37	22	22673378	22673378	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:22673378C>T	uc011aim.1	+	33		c.2457C>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TAAGGTGGTACCAACAAAAGC	0.542													119	211					0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	22749605	22749605	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:22749605C>T	uc011aim.1	+	49		c.5602C>T								Parts of antibodies, mostly variable regions.												0						CCTGTGCTTCCAGCACTGGAG	0.507													35	43					0	0	0.013726	0	0
LOC96610	96610	broad.mit.edu	37	22	23011051	23011051	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:23011051G>A	uc011aim.1	+	121		c.7737G>A								Parts of antibodies, mostly variable regions.												0						AGACAGCCAGGATCACCTGCT	0.542													52	177					0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	23101590	23101590	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:23101590C>T	uc011aim.1	+	210		c.11019C>T								Parts of antibodies, mostly variable regions.												0						GGTTTCTAATCGCTTCTCTGG	0.522													123	417					0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	23165656	23165656	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:23165656C>T	uc011aim.1	+	287		c.13218C>T								Parts of antibodies, mostly variable regions.												0						AGTAAGCGGCCCTCAGGGGTC	0.557													277	456					0	0	0.014410	0	0
SUSD2	56241	broad.mit.edu	37	22	24580798	24580798	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:24580798C>T	uc002zzn.1	+	5	716	c.672C>T	c.(670-672)ATC>ATT	p.I224I		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	224	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCACACACATCCCCAACTCCG	0.567													36	62					0	0	0.019004	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659591	24659591	+	RNA	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:24659591A>G	uc002zzs.3	+	7		c.3323A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ACTCACTGACATCGAAGGCTG	0.632													5	58					0	0	0.004482	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659593	24659593	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:24659593C>T	uc002zzs.3	+	7		c.3325C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TCACTGACATCGAAGGCTGCC	0.632													5	58					0	0	0.004482	0	0
C22orf36	388886	broad.mit.edu	37	22	24982039	24982039	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:24982039G>A	uc003aaq.2	-	4	792	c.763C>T	c.(763-765)CTG>TTG	p.L255L	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_RNA|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	255											0						GGCTGGGGCAGGGAAGCCACA	0.667													90	161					0	0	0.014410	0	0
SGSM1	129049	broad.mit.edu	37	22	25264407	25264407	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:25264407C>T	uc003abg.2	+	11	1216	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	SGSM1_uc003abh.2_Silent_p.F353F|SGSM1_uc010guu.1_Silent_p.F353F|SGSM1_uc003abj.2_Silent_p.F353F|SGSM1_uc003abi.1_Silent_p.F328F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	353						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CCTTCCGCTTCCCCAAGGGCG	0.652													39	105					0	0	0.025465	0	0
SGSM1	129049	broad.mit.edu	37	22	25294347	25294347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:25294347G>A	uc003abg.2	+	20	2753	c.2596G>A	c.(2596-2598)GAT>AAT	p.D866N	SGSM1_uc003abh.2_Missense_Mutation_p.D805N|SGSM1_uc010guu.1_Missense_Mutation_p.D811N|SGSM1_uc003abj.2_Missense_Mutation_p.D750N|SGSM1_uc003abi.1_Missense_Mutation_p.D786N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	866	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGAAAAGGACGATGTTGTGAT	0.587													68	136					0	0	0.014410	0	0
SGSM1	129049	broad.mit.edu	37	22	25320226	25320226	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:25320226G>A	uc003abg.2	+	26	3589	c.3432G>A	c.(3430-3432)CTG>CTA	p.L1144L	SGSM1_uc003abh.2_Silent_p.L1083L|SGSM1_uc010guu.1_Silent_p.L1089L|SGSM1_uc003abj.2_Silent_p.L1028L|SGSM1_uc003abi.1_Silent_p.L1064L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	1144						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGCAGACTCTGATTGAGAACA	0.572													24	52					0	0	0.018920	0	0
CRYBB2	1415	broad.mit.edu	37	22	25620957	25620957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:25620957G>A	uc003abp.1	+	3	175	c.127G>A	c.(127-129)GAA>AAA	p.E43K		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	43	Beta/gamma crystallin 'Greek key' 1.				response to stimulus|visual perception		structural constituent of eye lens				0						CAACCTGAAGGAAACTGGCGT	0.552													37	114					0	0	0.017118	0	0
IGLL3	91353	broad.mit.edu	37	22	25714322	25714323	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:25714322_25714323GG>AA	uc003abr.2	+	1	435_436	c.335_336GG>AA	c.(334-336)GGG>GAA	p.G112E		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						TTTGGCAGCGGGACCCAGCTCA	0.569													27	111					0	0	0.004672	0	0
MYO18B	84700	broad.mit.edu	37	22	26164563	26164563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:26164563G>A	uc003abz.1	+	4	930	c.680G>A	c.(679-681)GGA>GAA	p.G227E	MYO18B_uc003aca.1_Missense_Mutation_p.G108E|MYO18B_uc010guy.1_Missense_Mutation_p.G108E|MYO18B_uc010guz.1_Missense_Mutation_p.G108E|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	227						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCAGGCCAAGGAACTGTGGCA	0.617													9	24					0	0	0.008291	0	0
MYO18B	84700	broad.mit.edu	37	22	26299772	26299772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:26299772G>A	uc003abz.1	+	31	5372	c.5122G>A	c.(5122-5124)GAA>AAA	p.E1708K	MYO18B_uc003aca.1_Missense_Mutation_p.E1589K|MYO18B_uc010guy.1_Missense_Mutation_p.E1590K|MYO18B_uc010guz.1_Missense_Mutation_p.E1588K|MYO18B_uc011aka.1_Missense_Mutation_p.E862K|MYO18B_uc011akb.1_Missense_Mutation_p.E1221K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1708	Potential.|Tail.|Gln-rich.		E -> K (in a lung adenocarcinoma sample; somatic mutation).			nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAGCCAGCAGGAAAACACCAT	0.512													4	10					0	0	0.009096	0	0
MYO18B	84700	broad.mit.edu	37	22	26348303	26348303	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:26348303C>T	uc003abz.1	+	38	6134	c.5884C>T	c.(5884-5886)CGA>TGA	p.R1962*	MYO18B_uc003aca.1_Nonsense_Mutation_p.R1843*|MYO18B_uc010guy.1_Nonsense_Mutation_p.R1844*|MYO18B_uc010guz.1_Nonsense_Mutation_p.R1842*|MYO18B_uc011aka.1_Nonsense_Mutation_p.R1116*|MYO18B_uc011akb.1_Nonsense_Mutation_p.R1475*|MYO18B_uc010gva.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1962	Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CACCGTGGATCGAGCCATCGT	0.507													8	21					0	0	0.003080	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688910	26688910	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:26688910G>A	uc003acb.2	+	2	789	c.633G>A	c.(631-633)GTG>GTA	p.V211V	SEZ6L_uc003acc.2_Silent_p.V211V|SEZ6L_uc011akc.1_Silent_p.V211V|SEZ6L_uc003acd.2_Silent_p.V211V|SEZ6L_uc011akd.1_Silent_p.V211V|SEZ6L_uc003ace.2_Silent_p.V211V|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	211	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AGCCCTATGTGGCCCACACAC	0.652													50	199					0	0	0.014410	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656093	29656093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:29656093C>T	uc003aeq.1	-	7	1489	c.1117G>A	c.(1117-1119)GGA>AGA	p.G373R	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	373						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CCACCCTTTCCATGGGTCACC	0.672													4	10					0	0	0.014758	0	0
NEFH	4744	broad.mit.edu	37	22	29881755	29881755	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:29881755G>A	uc003afo.2	+	3	1198	c.1127G>A	c.(1126-1128)TGG>TAG	p.W376*		NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	376	Coil 2B.|Rod.				cell death|nervous system development	neurofilament					0						AACACCAAGTGGGAGATGGCC	0.572													16	71					0	0	0.024245	0	0
HORMAD2	150280	broad.mit.edu	37	22	30500398	30500398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:30500398G>A	uc003agy.2	+	5	331	c.266G>A	c.(265-267)GGT>GAT	p.G89D		NM_152510	NP_689723	Q8N7B1	HORM2_HUMAN	HORMA domain containing 2	89	HORMA.				meiosis|mitosis	chromosome|nucleus					0			Epithelial(10;0.125)			AGGATTCAAGGTTGTTTTGAT	0.299													47	82					0	0	0.014410	0	0
MORC2	22880	broad.mit.edu	37	22	31331110	31331110	+	Silent	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:31331110A>C	uc003aje.1	-	20	3029	c.1665T>G	c.(1663-1665)CCT>CCG	p.P555P		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	617							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CAGCAGGTAAAGGGGGCGACC	0.572													15	55					0	0	0.020292	0	0
DEPDC5	9681	broad.mit.edu	37	22	32302432	32302432	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:32302432G>A	uc003als.2	+	42	4810	c.4668G>A	c.(4666-4668)CTG>CTA	p.L1556L	DEPDC5_uc011als.1_Silent_p.L1487L|DEPDC5_uc011alu.1_Silent_p.L1587L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.L1578L|DEPDC5_uc003alu.2_Silent_p.L1005L|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.L854L|DEPDC5_uc011alx.1_Silent_p.L404L|DEPDC5_uc010gwk.2_3'UTR|DEPDC5_uc011aly.1_Silent_p.L404L	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1556					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						ACAACCGGCTGGTCACGTTCT	0.592													108	417					0	0	0.014410	0	0
RFPL2	10739	broad.mit.edu	37	22	32587002	32587002	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:32587002G>A	uc003amg.3	-	5	1830	c.894C>T	c.(892-894)TTC>TTT	p.F298F	RFPL2_uc003ame.3_Silent_p.F237F|RFPL2_uc003amf.3_Silent_p.F208F|RFPL2_uc003amh.3_Silent_p.F208F	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	298	B30.2/SPRY.						zinc ion binding			skin(1)	1						TGCGGTCTACGAAGAGGAAAG	0.512													20	49					0	0	0.006320	0	0
TOM1	10043	broad.mit.edu	37	22	35728996	35728996	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:35728996C>T	uc003ann.2	+	9	1047	c.922C>T	c.(922-924)CAG>TAG	p.Q308*	TOM1_uc011ami.1_Nonsense_Mutation_p.Q275*|TOM1_uc011amj.1_Nonsense_Mutation_p.Q151*|TOM1_uc003ans.2_Nonsense_Mutation_p.Q151*|TOM1_uc011amk.1_Nonsense_Mutation_p.Q270*|TOM1_uc003anp.2_Nonsense_Mutation_p.Q308*|TOM1_uc011aml.1_Nonsense_Mutation_p.Q263*|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Nonsense_Mutation_p.Q302*|TOM1_uc003anr.2_Nonsense_Mutation_p.Q151*	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	308					endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						CCGAACAGGCCAGACCACCAA	0.483													89	238					0	0	0.014410	0	0
APOL5	80831	broad.mit.edu	37	22	36123097	36123097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:36123097G>A	uc003aof.2	+	3	982	c.982G>A	c.(982-984)GAA>AAA	p.E328K		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	328					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GACAGCAGAGGAACTGAGAGC	0.607													29	85					0	0	0.008361	0	0
CACNG2	10369	broad.mit.edu	37	22	36960801	36960801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:36960801G>A	uc003aps.1	-	4	851	c.569C>T	c.(568-570)GCC>GTC	p.A190V		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	190	Helical; (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GACCATCTCGGCGATGATGAA	0.597													140	496					0	0	0.014410	0	0
PVALB	5816	broad.mit.edu	37	22	37213031	37213032	+	Silent	DNP	GC	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:37213031_37213032GC>AT	uc010gwz.2	-	1	48_49	c.18_19GC>AT	c.(16-21)TTGCTG>TTATTG	p.6_7LL>LL	PVALB_uc003apx.2_Silent_p.6_7LL>LL	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	6_7							calcium ion binding			skin(1)	1						TCAGCGTTCAGCAAGTCTGTCA	0.569													26	64					0	0	0.004672	0	0
ELFN2	114794	broad.mit.edu	37	22	37771275	37771275	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:37771275C>T	uc003asq.3	-	3	1086	c.300G>A	c.(298-300)CTG>CTA	p.L100L		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	100	LRR 2.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TCGACTGGCCCAGGAAGGCAC	0.597													72	106					0	0	0.014410	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119785	38119785	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:38119785C>T	uc003atr.2	+	7	1493	c.1222C>T	c.(1222-1224)CAG>TAG	p.Q408*	TRIOBP_uc003atu.2_Nonsense_Mutation_p.Q236*|TRIOBP_uc003atq.1_Nonsense_Mutation_p.Q408*|TRIOBP_uc003ats.1_Nonsense_Mutation_p.Q236*	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	408					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ATCCTGTGCCCAGCGGGACAA	0.592													93	145					0	0	0.014410	0	0
TRIOBP	11078	broad.mit.edu	37	22	38131052	38131052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:38131052G>A	uc003atr.2	+	9	4980	c.4709G>A	c.(4708-4710)GGA>GAA	p.G1570E	TRIOBP_uc003atu.2_Missense_Mutation_p.G1398E	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1570					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGGGCACCAGGAGAGGGGGTC	0.692											OREG0026548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	147					0	0	0.014410	0	0
MICALL1	85377	broad.mit.edu	37	22	38323469	38323469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:38323469C>T	uc003aui.2	+	9	1601	c.1517C>T	c.(1516-1518)TCG>TTG	p.S506L		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	506	Pro-rich.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					GCCACACCATCGCCAGCGCTC	0.677													19	53					0	0	0.006122	0	0
PLA2G6	8398	broad.mit.edu	37	22	38525490	38525490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:38525490G>A	uc003auy.1	-	8	1293	c.1157C>T	c.(1156-1158)CCT>CTT	p.P386L	PLA2G6_uc003auz.1_Missense_Mutation_p.P386L|PLA2G6_uc003ava.1_Missense_Mutation_p.P386L|PLA2G6_uc003avb.2_Missense_Mutation_p.P386L|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Missense_Mutation_p.P351L	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	386					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	TAGGAATGTAGGAGTCTCCCC	0.557													58	106					0	0	0.014410	0	0
TMEM184B	25829	broad.mit.edu	37	22	38627283	38627283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:38627283G>A	uc003avf.1	-	4	640	c.416C>T	c.(415-417)TCC>TTC	p.S139F	TMEM184B_uc003avg.1_Missense_Mutation_p.S139F|TMEM184B_uc003avh.1_Missense_Mutation_p.S73F|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	139	Helical; (Potential).					integral to membrane					0	Melanoma(58;0.045)					CGACATGATGGAACTTTCTCC	0.507													133	230					0	0	0.014410	0	0
MGAT3	4248	broad.mit.edu	37	22	39884213	39884213	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:39884213C>T	uc003axv.3	+	2	1100	c.861C>T	c.(859-861)ATC>ATT	p.I287I	MGAT3_uc010gxy.2_Silent_p.I287I	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	287	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					ACGGCTGGATCGCCGACGACT	0.647													85	264					0	0	0.014410	0	0
CACNA1I	8911	broad.mit.edu	37	22	40036908	40036908	+	Silent	SNP	G	A	A	rs149938037	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:40036908G>A	uc003ayc.2	+	6	777	c.777G>A	c.(775-777)CCG>CCA	p.P259P	CACNA1I_uc003ayd.2_Silent_p.P259P|CACNA1I_uc003aye.2_Silent_p.P174P|CACNA1I_uc003ayf.2_Silent_p.P174P	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	259	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACTACCAGCCGGAGGAGGATG	0.602													12	45					0	0	0.020292	0	0
CACNA1I	8911	broad.mit.edu	37	22	40066861	40066861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:40066861C>T	uc003ayc.2	+	26	4441	c.4441C>T	c.(4441-4443)CAC>TAC	p.H1481Y	CACNA1I_uc003ayd.2_Missense_Mutation_p.H1446Y|CACNA1I_uc003aye.2_Missense_Mutation_p.H1396Y|CACNA1I_uc003ayf.2_Missense_Mutation_p.H1361Y	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1481	Cytoplasmic (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GCTGCTCATCCACTCCATGTG	0.587													65	274					0	0	0.014410	0	0
GRAP2	9402	broad.mit.edu	37	22	40362074	40362074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:40362074C>T	uc003ayh.1	+	5	634	c.371C>T	c.(370-372)TCC>TTC	p.S124F	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.S98F|GRAP2_uc011aon.1_Missense_Mutation_p.S58F|GRAP2_uc010gya.1_Missense_Mutation_p.S124F|GRAP2_uc011aoo.1_Missense_Mutation_p.S52F|GRAP2_uc011aop.1_Missense_Mutation_p.S84F|GRAP2_uc011aoq.1_Intron|GRAP2_uc003ayj.1_Missense_Mutation_p.S124F	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	124	SH2.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAGTTTCCATCCCTAAATAAG	0.453													71	117					0	0	0.014410	0	0
MEI1	150365	broad.mit.edu	37	22	42172184	42172184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:42172184G>A	uc003baz.1	+	21	2648	c.2623G>A	c.(2623-2625)GAT>AAT	p.D875N	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.D261N|MEI1_uc003bbc.1_Missense_Mutation_p.D243N|MEI1_uc010gym.1_Missense_Mutation_p.D243N|MEI1_uc003bbd.1_Missense_Mutation_p.D118N|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	875							binding			central_nervous_system(1)|skin(1)	2						GAGGAATGAGGATATCCAAGT	0.562													45	109					0	0	0.013114	0	0
SEPT3	55964	broad.mit.edu	37	22	42377782	42377782	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:42377782C>T	uc003bbr.3	+	2	282	c.144C>T	c.(142-144)ATC>ATT	p.I48I	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_Silent_p.I48I|SEPT3_uc010gyr.2_Intron|SEPT3_uc011apj.1_Intron|SEPT3_uc010gys.2_5'UTR	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	48					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						ACACCATCATCGAGCAGATGC	0.597													38	59					0	0	0.021022	0	0
WBP2NL	164684	broad.mit.edu	37	22	42422814	42422814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:42422814C>T	uc011ape.1	+	7	575	c.559C>T	c.(559-561)CCC>TCC	p.P187S	WBP2NL_uc003bbt.2_Missense_Mutation_p.P187S|WBP2NL_uc011apk.1_Missense_Mutation_p.P59S|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	187	10 X 7 AA tandem repeat of Y-G-X-P-P-X-G.|Gly-rich.|2.|WW-binding.				egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						AGCCCCACCTCCCGGATACGG	0.517													131	375					0	0	0.014410	0	0
EFCAB6	64800	broad.mit.edu	37	22	44063083	44063083	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:44063083G>A	uc003bdy.1	-	17	2099	c.1884C>T	c.(1882-1884)TTC>TTT	p.F628F	EFCAB6_uc003bdz.1_Silent_p.F476F|EFCAB6_uc010gzi.1_Silent_p.F476F|EFCAB6_uc010gzj.1_5'UTR|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	628					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TACACTTTTTGAATTTTTCAA	0.413													83	211					0	0	0.014410	0	0
EFCAB6	64800	broad.mit.edu	37	22	44068144	44068144	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:44068144G>A	uc003bdy.1	-	14	1676	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	EFCAB6_uc003bdz.1_Silent_p.F335F|EFCAB6_uc010gzi.1_Silent_p.F335F|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AGGCCAGGAGGAAAGGTGTCT	0.368													32	84					0	0	0.013726	0	0
SULT4A1	25830	broad.mit.edu	37	22	44229612	44229612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:44229612C>T	uc003bee.1	-	5	627	c.511G>A	c.(511-513)GGC>AGC	p.G171S	SULT4A1_uc003bed.1_Missense_Mutation_p.G92S|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Missense_Mutation_p.G58S	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	171					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		GAGCCGTAGCCCACTGCGGAG	0.627													10	12					0	0	0.006214	0	0
PNPLA3	80339	broad.mit.edu	37	22	44323028	44323029	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:44323028_44323029CC>GT	uc003bei.1	+	2	574_575	c.401_402CC>GT	c.(400-402)TCC>TGT	p.S134C	PNPLA3_uc010gzm.1_RNA	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	134	Lumenal (Potential).|Patatin.				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				GACTTTCGGTCCAAAGACGAAG	0.416													42	113					0	0	0.004672	0	0
PHF21B	112885	broad.mit.edu	37	22	45312200	45312200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:45312200C>T	uc003bfn.2	-	4	675	c.524G>A	c.(523-525)AGC>AAC	p.S175N	PHF21B_uc003bfm.2_Missense_Mutation_p.S13N|PHF21B_uc011aqk.1_Missense_Mutation_p.S163N|PHF21B_uc011aql.1_Missense_Mutation_p.S175N|PHF21B_uc011aqm.1_Missense_Mutation_p.S163N	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	175							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GACTTTGATGCTGTCACTGAC	0.657													70	98					0	0	0.014410	0	0
SMC1B	27127	broad.mit.edu	37	22	45802443	45802443	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:45802443C>T	uc003bgc.2	-	4	565	c.513G>A	c.(511-513)AAG>AAA	p.K171K	SMC1B_uc003bgd.2_Silent_p.K171K|SMC1B_uc003bge.1_5'UTR	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	171	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		ACTTTCTTTTCTTTTCTTCAT	0.368													78	105					0	0	0.014410	0	0
PPARA	5465	broad.mit.edu	37	22	46631032	46631032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:46631032C>T	uc003bgw.1	+	9	1428	c.1162C>T	c.(1162-1164)CGT>TGT	p.R388C	PPARA_uc003bgx.1_Missense_Mutation_p.R388C|PPARA_uc010hab.1_Missense_Mutation_p.R388C|PPARA_uc003bhb.1_Missense_Mutation_p.R388C|PPARA_uc010hac.1_Missense_Mutation_p.R185C	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	388	Ligand-binding.|Required for heterodimerization with RXRA.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	GAGACTAGATCGTCCTGGCCT	0.448													69	171					0	0	0.014410	0	0
CELSR1	9620	broad.mit.edu	37	22	46859931	46859931	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:46859931G>A	uc003bhw.1	-	2	3856	c.3856C>T	c.(3856-3858)CTG>TTG	p.L1286L		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1286	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GTCCGATTCAGGTAGATCTGC	0.632													88	122					0	0	0.014410	0	0
PIM3	415116	broad.mit.edu	37	22	50355389	50355389	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:50355389C>T	uc003bjb.2	+	4	999	c.546C>T	c.(544-546)TCC>TCT	p.S182S	PIM3_uc011arj.1_5'Flank	NM_001001852	NP_001001852	Q86V86	PIM3_HUMAN	serine/threonine protein kinase pim-3	182	Protein kinase.				cell cycle|negative regulation of apoptosis|regulation of mitotic cell cycle		ATP binding|protein binding|protein serine/threonine kinase activity				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.196)|LUAD - Lung adenocarcinoma(64;0.247)		ACCTGCGCTCCGGAGAGCTCA	0.652													31	49					0	0	0.010818	0	0
MOV10L1	54456	broad.mit.edu	37	22	50589166	50589166	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:50589166C>T	uc003bjj.2	+	21	2813	c.2730C>T	c.(2728-2730)ATC>ATT	p.I910I	MOV10L1_uc003bjk.3_Silent_p.I910I|MOV10L1_uc011arp.1_Silent_p.I890I|MOV10L1_uc003bjl.2_Silent_p.I37I|MOV10L1_uc003bjm.1_Intron	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	910					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GTGTGCAGATCGTGCTGGCAG	0.622													20	33					0	0	0.010504	0	0
SAPS2	9701	broad.mit.edu	37	22	50869676	50869676	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:50869676C>T	uc003blb.1	+	12	1622	c.1200C>T	c.(1198-1200)TCC>TCT	p.S400S	SAPS2_uc003bky.1_Silent_p.S400S|SAPS2_uc003bkz.1_Silent_p.S400S|SAPS2_uc003blc.2_Silent_p.S400S|SAPS2_uc003bla.1_Silent_p.S401S|SAPS2_uc003bld.1_5'UTR	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	400						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		CTATTCTCTCCCACGCTGCCC	0.557													188	295					0	0	0.014410	0	0
ARSA	410	broad.mit.edu	37	22	51063591	51063591	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:51063591G>A	uc003bnb.3	-	9	1759	c.1506C>T	c.(1504-1506)TGC>TGT	p.C502C	ARSA_uc003bna.3_Silent_p.C418C|ARSA_uc003bnc.3_Silent_p.C502C|ARSA_uc003bnd.3_Silent_p.C502C|ARSA_uc003bmz.3_Silent_p.C502C	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	502						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	GGGGATCTGGGCAATGGCAGC	0.692													12	20					0	0	0.013537	0	0
CNTN4	152330	broad.mit.edu	37	3	2928840	2928840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:2928840G>A	uc003bpc.2	+	9	1093	c.872G>A	c.(871-873)GGT>GAT	p.G291D	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.G291D	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	291	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GAGGATGCTGGTTTATATGAA	0.393													19	62					0	0	0.007413	0	0
CNTN4	152330	broad.mit.edu	37	3	2944560	2944560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:2944560G>A	uc003bpc.2	+	11	1299	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	CNTN4_uc003bpb.1_Missense_Mutation_p.D32N|CNTN4_uc003bpd.1_Missense_Mutation_p.D360N|CNTN4_uc003bpe.2_Missense_Mutation_p.D32N|CNTN4_uc003bpf.2_Missense_Mutation_p.D32N	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	360	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCTTTCACAGGATAGAATTCA	0.358													4	41					0	0	0.009096	0	0
CNTN4	152330	broad.mit.edu	37	3	3076318	3076318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:3076318C>T	uc003bpc.2	+	16	2007	c.1786C>T	c.(1786-1788)CCT>TCT	p.P596S	CNTN4_uc003bpb.1_Missense_Mutation_p.P267S|CNTN4_uc003bpd.1_Missense_Mutation_p.P596S|CNTN4_uc003bpe.2_Missense_Mutation_p.P268S|CNTN4_uc003bpf.2_Missense_Mutation_p.P267S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	596	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TTTCCCAGGTCCTCCAGGTCC	0.522													11	56					0	0	0.008291	0	0
LRRN1	57633	broad.mit.edu	37	3	3888048	3888048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:3888048C>T	uc003bpt.3	+	2	2484	c.1723C>T	c.(1723-1725)CCA>TCA	p.P575S	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	575	Fibronectin type-III.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TGCCAGGGTCCCAGTCGATGT	0.433													80	289					0	0	0.014410	0	0
ITPR1	3708	broad.mit.edu	37	3	4725190	4725190	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:4725190C>T	uc003bqa.2	+	27	3603	c.3255C>T	c.(3253-3255)TTC>TTT	p.F1085F	ITPR1_uc010hca.1_Silent_p.F1070F|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.F16F	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1094	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGCTCCTCTTCCGGCACTTCA	0.592													90	109					0	0	0.014410	0	0
ITPR1	3708	broad.mit.edu	37	3	4732914	4732914	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:4732914C>T	uc003bqa.2	+	32	4236	c.3888C>T	c.(3886-3888)TTC>TTT	p.F1296F	ITPR1_uc010hca.1_Silent_p.F1281F|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.F227F	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1305	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TTCAGCACTTCGTTCACTGCA	0.428													10	58					0	0	0.006214	0	0
EDEM1	9695	broad.mit.edu	37	3	5249907	5249907	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:5249907C>T	uc003bqi.2	+	8	1600	c.1468C>T	c.(1468-1470)CTG>TTG	p.L490L	EDEM1_uc011asz.1_Silent_p.L268L|EDEM1_uc003bqh.2_Silent_p.L490L	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	490	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		CTTCTACCCACTGAGACCAGA	0.488													40	158					0	0	0.025465	0	0
GRM7	2917	broad.mit.edu	37	3	7188330	7188330	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:7188330C>T	uc003bqm.2	+	2	985	c.711C>T	c.(709-711)TCC>TCT	p.S237S	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.S237S|GRM7_uc003bql.2_Silent_p.S237S	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	237	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GTGTGGAGTCCTTCACGCAGA	0.483													16	25					0	0	0.014323	0	0
LMCD1	29995	broad.mit.edu	37	3	8590280	8590280	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:8590280C>T	uc003bqq.2	+	4	528	c.414C>T	c.(412-414)CCC>CCT	p.P138P	LMCD1_uc011atd.1_Silent_p.P65P|LMCD1_uc011ate.1_Silent_p.P26P|LMCD1_uc011atf.1_Silent_p.P65P	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	138	PET.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		AGCTCATCCCCAAGGAGAAGC	0.567													80	87					0	0	0.014410	0	0
OXTR	5021	broad.mit.edu	37	3	8809555	8809555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:8809555C>T	uc003brc.2	-	3	941	c.319G>A	c.(319-321)GGG>AGG	p.G107R		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	107	Extracellular (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	AGGTCGGGCCCGTAGAAGCGG	0.612													29	30					0	0	0.013726	0	0
SRGAP3	9901	broad.mit.edu	37	3	9027574	9027574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:9027574C>T	uc003brf.1	-	22	3605	c.2929G>A	c.(2929-2931)GAA>AAA	p.E977K	SRGAP3_uc003brg.1_Missense_Mutation_p.E953K	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	977	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CTCTCGAGTTCCCGCAACTCG	0.647			T	RAF1	pilocytic astrocytoma								68	90					0	0	0.014410	0	0
TADA3	10474	broad.mit.edu	37	3	9831435	9831435	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:9831435G>A	uc003bsx.1	-	3	968	c.420C>T	c.(418-420)ATC>ATT	p.I140I	TADA3_uc010hcn.1_Silent_p.I140I|TADA3_uc003bsy.2_Silent_p.I140I|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	140					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						GTGGCACGTCGATAGGGTCAT	0.572													92	329					0	0	0.014410	0	0
C3orf24	115795	broad.mit.edu	37	3	10146326	10146326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:10146326C>T	uc003buz.2	-	2	358	c.133G>A	c.(133-135)GAC>AAC	p.D45N	C3orf24_uc003bva.1_Missense_Mutation_p.D45N	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	45											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		ACTTCAAGGTCGGACGGTGTG	0.557													95	128					0	0	0.014410	0	0
ATP2B2	491	broad.mit.edu	37	3	10491134	10491134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:10491134G>A	uc003bvt.2	-	2	533	c.94C>T	c.(94-96)CGC>TGC	p.R32C	ATP2B2_uc003bvv.2_Missense_Mutation_p.R32C|ATP2B2_uc003bvw.2_Missense_Mutation_p.R32C|ATP2B2_uc010hdp.2_Missense_Mutation_p.R32C	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	32	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						ATGAGGGAGCGGAGCTCCTCC	0.557													72	100					0	0	0.014410	0	0
HRH1	3269	broad.mit.edu	37	3	11301955	11301956	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:11301955_11301956GG>AA	uc010hdr.2	+	2	1574_1575	c.1232_1233GG>AA	c.(1231-1233)AGG>AAA	p.R411K	HRH1_uc010hds.2_Missense_Mutation_p.R411K|HRH1_uc010hdt.2_Missense_Mutation_p.R411K|HRH1_uc003bwb.3_Missense_Mutation_p.R411K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	411	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	AACCGCGAAAGGAAGGCCGCCA	0.475													149	197					0	0	0.004672	0	0
SYN2	6854	broad.mit.edu	37	3	12182185	12182185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:12182185G>A	uc003bwm.2	+	6	576	c.412G>A	c.(412-414)GAT>AAT	p.D138N	SYN2_uc003bwl.1_Missense_Mutation_p.D138N	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	138					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGTCCTTGGAGATTATGATAT	0.433													17	65					0	0	0.010504	0	0
FGD5	152273	broad.mit.edu	37	3	14952406	14952406	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:14952406G>A	uc003bzc.2	+	11	3485	c.3375G>A	c.(3373-3375)GGG>GGA	p.G1125G	FGD5_uc011avk.1_Silent_p.G1125G|FGD5_uc003bzd.2_Silent_p.G203G	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1125	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AAGTAACAGGGAAAAACAGAC	0.542													18	30					0	0	0.018920	0	0
COLQ	8292	broad.mit.edu	37	3	15499767	15499767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:15499767C>T	uc003bzx.2	-	13	1006	c.880G>A	c.(880-882)GGA>AGA	p.G294R	COLQ_uc003bzv.2_Missense_Mutation_p.G284R|COLQ_uc003bzz.2_Missense_Mutation_p.G285R|COLQ_uc010heo.2_Missense_Mutation_p.G260R|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.G153R|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	294					acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						ATAGTGGGTCCACAAAGACAT	0.517													115	183					0	0	0.014410	0	0
RAB5A	5868	broad.mit.edu	37	3	20017216	20017217	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:20017216_20017217CC>TT	uc003cbn.2	+	3	822_823	c.287_288CC>TT	c.(286-288)GCC>GTT	p.A96V	RAB5A_uc010hey.2_RNA|RAB5A_uc011awg.1_Missense_Mutation_p.A82V	NM_004162	NP_004153	P20339	RAB5A_HUMAN	RAB5A, member RAS oncogene family	96					blood coagulation|protein transport|receptor internalization|regulation of filopodium assembly|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GDP binding|GTP binding|GTPase activity				0						GCACAAGCAGCCATAGTTGTAT	0.376													25	96					0	0	0.004672	0	0
VENTXP7	391518	broad.mit.edu	37	3	21447718	21447718	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:21447718G>A	uc003ccd.2	+	1		c.501G>A				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						GTCTCTCCACGGGCCCCCTGC	0.597													16	11					0	0	0.024245	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751307	26751307	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:26751307C>T	uc003cdp.2	+	2	733	c.144C>T	c.(142-144)GTC>GTT	p.V48V	LRRC3B_uc003cdq.2_Silent_p.V48V	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	48	LRRNT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						GTTTAAATGTCACCTGTAGCA	0.423													44	47					0	0	0.011902	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751923	26751923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:26751923G>A	uc003cdp.2	+	2	1349	c.760G>A	c.(760-762)GAT>AAT	p.D254N	LRRC3B_uc003cdq.2_Missense_Mutation_p.D254N	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	254						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TGAACCTGATGATATTAGCAC	0.428													14	26					0	0	0.028581	0	0
GADL1	339896	broad.mit.edu	37	3	30885920	30885920	+	Silent	SNP	C	T	T	rs148964604		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:30885920C>T	uc003cep.2	-	7	737	c.690G>A	c.(688-690)GGG>GGA	p.G230G	GADL1_uc003ceq.1_Silent_p.G230G	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	230					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	CAGTGCCAATCCCAAGAAAAG	0.433													99	131					0	0	0.014410	0	0
PDCD6IP	10015	broad.mit.edu	37	3	33877671	33877671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:33877671C>T	uc003cfx.2	+	8	1125	c.970C>T	c.(970-972)CCA>TCA	p.P324S	PDCD6IP_uc003cfy.2_Missense_Mutation_p.P329S|PDCD6IP_uc011axw.1_Missense_Mutation_p.P105S	NM_013374	NP_037506	Q8WUM4	PDC6I_HUMAN	programmed cell death 6 interacting protein	324	Interaction with EIAV p9.|Interaction with CHMP4A, CHMP4B and CHMP4C.|BRO1.				apoptosis|cell cycle|cell division|interspecies interaction between organisms|protein transport	cytosol|melanosome|microtubule organizing center	calcium-dependent protein binding			ovary(1)|skin(1)	2						TGATCGAGTTCCAGACCTTAA	0.383													43	228					0	0	0.010771	0	0
ARPP21	10777	broad.mit.edu	37	3	35729253	35729253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:35729253C>T	uc003cgb.2	+	6	548	c.284C>T	c.(283-285)TCC>TTC	p.S95F	ARPP21_uc003cga.2_Missense_Mutation_p.S95F|ARPP21_uc011axy.1_Missense_Mutation_p.S95F|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	95						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TTACAGCTTTCCAGTTTTTCC	0.358													30	40					0	0	0.012213	0	0
STAC	6769	broad.mit.edu	37	3	36547319	36547319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:36547319G>A	uc003cgh.1	+	8	952	c.913G>A	c.(913-915)GAA>AAA	p.E305K	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.E244K	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	305	SH3.				intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						TGAAGATTTGGAAATGAGGTA	0.328													25	22					0	0	0.024334	0	0
DCLK3	85443	broad.mit.edu	37	3	36779265	36779265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:36779265C>T	uc003cgi.2	-	2	1377	c.886G>A	c.(886-888)GAG>AAG	p.E296K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	296						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTCTCTGCCTCCTTCTCTTCT	0.567													142	196					0	0	0.014410	0	0
DCLK3	85443	broad.mit.edu	37	3	36779826	36779826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:36779826G>A	uc003cgi.2	-	2	816	c.325C>T	c.(325-327)CCC>TCC	p.P109S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	109						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GCTTCCCTGGGGGGCTTGCTA	0.567													202	225					0	0	0.014410	0	0
TRANK1	9881	broad.mit.edu	37	3	36893308	36893308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:36893308G>A	uc003cgj.2	-	5	3309	c.3007C>T	c.(3007-3009)CCA>TCA	p.P1003S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1553					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGCTCTTCTGGAATTTTCTCC	0.383													5	13					0	0	0.014758	0	0
SLC22A13	9390	broad.mit.edu	37	3	38317122	38317122	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38317122C>T	uc003chz.3	+	6	1035	c.981C>T	c.(979-981)CAC>CAT	p.H327H	SLC22A13_uc011aym.1_RNA|SLC22A13_uc011ayn.1_Silent_p.H327H	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	327	Cytoplasmic (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		TGTTCAGACACCCCCAGCTCC	0.592													39	77					0	0	0.008740	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357869	38357869	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38357869C>T	uc010hhc.1	+	10	1629	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	SLC22A14_uc003cib.2_Silent_p.S529S|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	529	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CCATCTTGTCCCTGACAATCA	0.622													36	143					0	0	0.023175	0	0
SCN5A	6331	broad.mit.edu	37	3	38639247	38639247	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38639247G>A	uc003cio.2	-	14	2429	c.2235C>T	c.(2233-2235)TTC>TTT	p.F745F	SCN5A_uc003cin.2_Silent_p.F745F|SCN5A_uc003cil.3_Silent_p.F745F|SCN5A_uc010hhi.2_Silent_p.F745F|SCN5A_uc010hhk.2_Silent_p.F745F|SCN5A_uc011ayr.1_Silent_p.F745F|SCN5A_uc010hhj.1_Silent_p.F356F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	745					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCATCTCCTCGAATTCACTTG	0.562													68	82					0	0	0.014410	0	0
SCN5A	6331	broad.mit.edu	37	3	38639421	38639421	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38639421C>T	uc003cio.2	-	14	2255	c.2061G>A	c.(2059-2061)TGG>TGA	p.W687*	SCN5A_uc003cin.2_Nonsense_Mutation_p.W687*|SCN5A_uc003cil.3_Nonsense_Mutation_p.W687*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.W687*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.W687*|SCN5A_uc011ayr.1_Nonsense_Mutation_p.W687*|SCN5A_uc010hhj.1_Nonsense_Mutation_p.W298*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	687					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGAGACGGTTCCAGCATGGTG	0.532													93	98					0	0	0.014410	0	0
SCN5A	6331	broad.mit.edu	37	3	38663892	38663892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38663892C>T	uc003cio.2	-	4	675	c.481G>A	c.(481-483)GAG>AAG	p.E161K	SCN5A_uc003cin.2_Missense_Mutation_p.E161K|SCN5A_uc003cil.3_Missense_Mutation_p.E161K|SCN5A_uc010hhi.2_Missense_Mutation_p.E161K|SCN5A_uc010hhk.2_Missense_Mutation_p.E161K|SCN5A_uc011ayr.1_Missense_Mutation_p.E161K|SCN5A_uc010hhl.1_Missense_Mutation_p.E27K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	161	Helical; Name=S2 of repeat I; (Potential).		E -> K (in BRS1 and PFHB1A).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GATACTCACTCGACATACTTG	0.587													8	33					0	0	0.003080	0	0
SCN10A	6336	broad.mit.edu	37	3	38753898	38753898	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38753898G>A	uc003ciq.2	-	22	3843	c.3843C>T	c.(3841-3843)ATC>ATT	p.I1281I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1281	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGACATTCATGATGGATGGGA	0.552													40	120					0	0	0.027894	0	0
SCN11A	11280	broad.mit.edu	37	3	38912235	38912235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:38912235C>T	uc011ays.1	-	22	3959	c.3760G>A	c.(3760-3762)GCA>ACA	p.A1254T		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1254	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTAAATGTTGCCTGCAACAAA	0.418													16	58					0	0	0.024245	0	0
XIRP1	165904	broad.mit.edu	37	3	39226003	39226003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:39226003C>T	uc003cjk.1	-	2	5155	c.4934G>A	c.(4933-4935)AGG>AAG	p.R1645K	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.R328K	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1645							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CTCCTGCCTCCTGGTGGAAGG	0.542													57	200					0	0	0.014410	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307647	39307647	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:39307647G>A	uc003cjl.2	-	2	446	c.354C>T	c.(352-354)TTC>TTT	p.F118F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	118	Helical; Name=3; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CGGTGATGAAGAATATGCTTC	0.498													99	142					0	0	0.014410	0	0
ZNF501	115560	broad.mit.edu	37	3	44776077	44776077	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:44776077G>T	uc003cnu.1	+	3	565	c.164G>T	c.(163-165)TGT>TTT	p.C55F	ZNF501_uc003cnv.1_Missense_Mutation_p.C55F	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	55	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		TGCAGTGAATGTGGAAGTTGT	0.403													29	98					3.80469e-20	3.8769e-20	0.009535	1	0
KIF15	56992	broad.mit.edu	37	3	44881943	44881943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:44881943C>T	uc003cnx.3	+	28	3564	c.3415C>T	c.(3415-3417)CCC>TCC	p.P1139S	KIF15_uc010hiq.2_Missense_Mutation_p.P1042S|KIF15_uc010hir.2_Missense_Mutation_p.P187S	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1139	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		TGCTGAGGATCCCCAGGTACT	0.338													72	91					0	0	0.014410	0	0
EXOSC7	23016	broad.mit.edu	37	3	45030653	45030653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:45030653C>T	uc003coi.2	+	2	108	c.79C>T	c.(79-81)CGT>TGT	p.R27C	EXOSC7_uc003coh.1_5'UTR|EXOSC7_uc011bae.1_Missense_Mutation_p.R27C|EXOSC7_uc010his.1_Intron|EXOSC7_uc003coj.2_Missense_Mutation_p.R27C	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	27					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		TGTGGATGGCCGTGGCTGTGA	0.522													31	88					0	0	0.021022	0	0
CDCP1	64866	broad.mit.edu	37	3	45132817	45132817	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:45132817C>A	uc003com.2	-	7	1976	c.1841G>T	c.(1840-1842)CGG>CTG	p.R614L		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	614	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CTCCTCAGCCCGGGTCCGCTG	0.607													81	96					7.97268e-31	8.13893e-31	0.014410	1	0
CDCP1	64866	broad.mit.edu	37	3	45152248	45152248	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:45152248A>C	uc003com.2	-	4	876	c.741T>G	c.(739-741)GAT>GAG	p.D247E	CDCP1_uc003con.2_Missense_Mutation_p.D247E	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	247	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		TCATGAGCTCATCCTCAGGGA	0.562													73	256					0	0	0.014410	0	0
CCR9	10803	broad.mit.edu	37	3	45943267	45943267	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:45943267G>A	uc003coz.1	+	3	1144	c.987G>A	c.(985-987)GTG>GTA	p.V329V	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Silent_p.V317V|CCR9_uc003cpa.1_Silent_p.V317V	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	329	Cytoplasmic (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		GGGATCTCGTGAAAACCCTGA	0.512													32	85					0	0	0.013726	0	0
NBEAL2	23218	broad.mit.edu	37	3	47037254	47037254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:47037254G>A	uc003cqp.2	+	14	2128	c.1949G>A	c.(1948-1950)GGG>GAG	p.G650E	NBEAL2_uc010hjm.1_Missense_Mutation_p.G211E	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	650							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		ACGGCGGCCGGGACCCTGGTG	0.592													40	50					0	0	0.025465	0	0
KLHL18	23276	broad.mit.edu	37	3	47361193	47361193	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:47361193C>T	uc003crd.2	+	2	306	c.180C>T	c.(178-180)ATC>ATT	p.I60I	KLHL18_uc003crc.2_Silent_p.I60I|KLHL18_uc011bav.1_Intron	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	60											0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		CAGCCTCGATCCCGTATTTCC	0.433													69	232					0	0	0.014410	0	0
C3orf75	54859	broad.mit.edu	37	3	47539878	47539878	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:47539878A>T	uc003crk.2	-	6	689	c.570T>A	c.(568-570)GAT>GAA	p.D190E	C3orf75_uc003crj.2_Missense_Mutation_p.D117E|C3orf75_uc011bba.1_Missense_Mutation_p.D141E|C3orf75_uc003crl.1_Missense_Mutation_p.D190E	NM_001031703	NP_001026873	Q0PNE2	CC075_HUMAN	transmembrane protein 103	190											0						CATTCTCCTCATCCTCCGCAT	0.562													48	139					0	0	0.014410	0	0
FBXW12	285231	broad.mit.edu	37	3	48419850	48419850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48419850C>T	uc003csr.2	+	6	635	c.449C>T	c.(448-450)TCA>TTA	p.S150L	FBXW12_uc010hjv.2_Missense_Mutation_p.S131L|FBXW12_uc003css.2_Intron|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	150	WD 2.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TTCCATTTCTCAAATCTGGTA	0.483													35	54					0	0	0.023175	0	0
PLXNB1	5364	broad.mit.edu	37	3	48452431	48452431	+	Silent	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48452431T>C	uc003csw.2	-	29	5532	c.5262A>G	c.(5260-5262)CTA>CTG	p.L1754L	PLXNB1_uc003cst.2_Silent_p.L204L|PLXNB1_uc003csu.2_Silent_p.L1571L|PLXNB1_uc003csx.2_Silent_p.L1754L	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1754	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCACAGCCAATAGTGCATTCA	0.582													5	75					0	0	0.014758	0	0
PLXNB1	5364	broad.mit.edu	37	3	48460685	48460685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48460685G>A	uc003csw.2	-	12	3070	c.2800C>T	c.(2800-2802)CGG>TGG	p.R934W	PLXNB1_uc003csu.2_Missense_Mutation_p.R751W|PLXNB1_uc003csx.2_Missense_Mutation_p.R934W|PLXNB1_uc010hjx.1_RNA|PLXNB1_uc003csy.1_5'Flank	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	934	Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCTAGCAGCCGGATTTCCCGC	0.612													30	30					0	0	0.007291	0	0
COL7A1	1294	broad.mit.edu	37	3	48619788	48619788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48619788C>T	uc003ctz.2	-	46	4604	c.4603G>A	c.(4603-4605)GAG>AAG	p.E1535K		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1535	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGACCAGGCTCCCCCTGTGGA	0.607													142	197					0	0	0.014410	0	0
CELSR3	1951	broad.mit.edu	37	3	48663784	48663784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48663784G>A	uc003cuf.1	-	55	12290	c.12290C>T	c.(12289-12291)CCT>CTT	p.P4097L	SLC26A6_uc003cug.2_Missense_Mutation_p.P690L|SLC26A6_uc003cuh.2_Missense_Mutation_p.P711L|SLC26A6_uc010hke.2_Missense_Mutation_p.P543L|SLC26A6_uc003cuk.2_Missense_Mutation_p.P603L|SLC26A6_uc003cui.2_Missense_Mutation_p.P710L|SLC26A6_uc003cuj.2_Missense_Mutation_p.P692L|SLC26A6_uc011bbp.1_Missense_Mutation_p.P675L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCTGACCACAGGGCCTGTGGG	0.562													34	117					0	0	0.017118	0	0
CELSR3	1951	broad.mit.edu	37	3	48691867	48691867	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:48691867G>A	uc003cul.2	-	7	5288	c.5007C>T	c.(5005-5007)GGC>GGT	p.G1669G	CELSR3_uc003cuf.1_Silent_p.G1739G|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1669	Extracellular (Potential).|Laminin G-like 1.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GAAGAAGAGGGCCCGTCAGGT	0.632													26	43					0	0	0.007291	0	0
MON1A	84315	broad.mit.edu	37	3	49949127	49949127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:49949127C>T	uc003cxz.2	-	3	862	c.736G>A	c.(736-738)GAG>AAG	p.E246K	MON1A_uc003cya.2_Intron|MON1A_uc003cyb.2_Intron	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	149							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CGCCATGCCTCCGTGGCATCC	0.622													90	107					0	0	0.014410	0	0
SEMA3F	6405	broad.mit.edu	37	3	50220954	50220954	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:50220954G>A	uc003cyj.2	+	12	1388	c.1190G>A	c.(1189-1191)TGG>TAG	p.W397*	SEMA3F_uc003cyk.2_Nonsense_Mutation_p.W366*	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	397	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		AACTACCAGTGGATGCCCTTC	0.592													29	117					0	0	0.007291	0	0
TUSC2	11334	broad.mit.edu	37	3	50363596	50363596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:50363596G>A	uc003czy.1	-	3	436	c.289C>T	c.(289-291)CCC>TCC	p.P97S	TUSC2_uc003czz.1_RNA	NM_007275	NP_009206	O75896	TUSC2_HUMAN	tumor suppressor candidate 2	97					cell cycle|cell proliferation|cell-cell signaling		protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		TGGATGCGGGGGTGATCCAGC	0.592													8	14					0	0	0.006214	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50413429	50413429	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:50413429G>A	uc003daq.2	-	19	1776	c.1738C>T	c.(1738-1740)CTG>TTG	p.L580L	CACNA2D2_uc003dap.2_Silent_p.L580L	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	580	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TCCGCATCCAGGAAGTCCAGA	0.393													74	237					0	0	0.014410	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50513579	50513579	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:50513579C>T	uc003daq.2	-	2	296	c.258G>A	c.(256-258)CGG>CGA	p.R86R	CACNA2D2_uc003dap.2_Silent_p.R86R	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	86	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CTCCAAAAATCCGCATCACGC	0.607													5	23					0	0	0.014758	0	0
HEMK1	51409	broad.mit.edu	37	3	50615261	50615261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:50615261C>T	uc003dau.2	+	7	915	c.619C>T	c.(619-621)CGG>TGG	p.R207W	HEMK1_uc003dav.2_Missense_Mutation_p.R207W|HEMK1_uc003daw.2_Missense_Mutation_p.R207W	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	207					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		GTGTAGGCTTCGGTTGCAGGA	0.547													124	144					0	0	0.014410	0	0
DOCK3	1795	broad.mit.edu	37	3	51196675	51196675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:51196675G>A	uc011bds.1	+	11	852	c.829G>A	c.(829-831)GAT>AAT	p.D277N		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	277						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TTTCTCTTAGGATCTGAGCAG	0.343													36	112					0	0	0.019004	0	0
DOCK3	1795	broad.mit.edu	37	3	51196700	51196700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:51196700G>A	uc011bds.1	+	11	877	c.854G>A	c.(853-855)AGA>AAA	p.R285K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	285						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GATATGAAGAGAGATTTGTAT	0.358													67	92					0	0	0.014410	0	0
DOCK3	1795	broad.mit.edu	37	3	51284163	51284163	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:51284163C>T	uc011bds.1	+	22	2132	c.2109C>T	c.(2107-2109)CTC>CTT	p.L703L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	703						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCAGGGAGCTCATCCGCTGTT	0.428													12	50					0	0	0.024245	0	0
NT5DC2	64943	broad.mit.edu	37	3	52558517	52558517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:52558517G>A	uc003deo.2	-	14	1956	c.1532C>T	c.(1531-1533)CCC>CTC	p.P511L	NT5DC2_uc003dem.2_Missense_Mutation_p.P381L|NT5DC2_uc003den.2_Missense_Mutation_p.P548L|NT5DC2_uc010hmi.2_Missense_Mutation_p.P523L|NT5DC2_uc010hmj.2_Missense_Mutation_p.P327L	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	511							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		ACCAAGGAAGGGGGTCTTCAT	0.612													54	288					0	0	0.014410	0	0
RFT1	91869	broad.mit.edu	37	3	53153976	53153976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:53153976G>A	uc003dgj.2	-	6	674	c.620C>T	c.(619-621)TCC>TTC	p.S207F	RFT1_uc003dgk.2_Missense_Mutation_p.S168F	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	207	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		TGATTCTGGGGAACCCAGTAA	0.328													37	120					0	0	0.023175	0	0
ERC2	26059	broad.mit.edu	37	3	56044613	56044613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:56044613C>T	uc003dhr.1	-	9	2040	c.1784G>A	c.(1783-1785)AGA>AAA	p.R595K	ERC2_uc003dht.1_Missense_Mutation_p.R66K	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	595	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTCAATTATTCTCTCCTGTAA	0.383													27	74					0	0	0.008361	0	0
FLNB	2317	broad.mit.edu	37	3	58154221	58154221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:58154221C>T	uc003djj.2	+	44	7418	c.7253C>T	c.(7252-7254)TCC>TTC	p.S2418F	FLNB_uc010hne.2_Missense_Mutation_p.S2449F|FLNB_uc003djk.2_Missense_Mutation_p.S2407F|FLNB_uc010hnf.2_Missense_Mutation_p.S2394F|FLNB_uc003djl.2_Missense_Mutation_p.S2238F|FLNB_uc003djm.2_Missense_Mutation_p.S2225F|uc003djn.2_Intron	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2418	Filamin 23.|Interaction with INPPL1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGGACATTATCCGTCACCATC	0.488													46	60					0	0	0.014410	0	0
FLNB	2317	broad.mit.edu	37	3	58155360	58155360	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:58155360C>T	uc003djj.2	+	45	7626	c.7461C>T	c.(7459-7461)TCC>TCT	p.S2487S	FLNB_uc010hne.2_Silent_p.S2518S|FLNB_uc003djk.2_Silent_p.S2476S|FLNB_uc010hnf.2_Silent_p.S2463S|FLNB_uc003djl.2_Silent_p.S2307S|FLNB_uc003djm.2_Silent_p.S2294S|uc003djn.2_Intron	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2487	Hinge 2 (By similarity).|Interaction with INPPL1.|Self-association site, tail (By similarity).			S -> C (in Ref. 11; AAA35505).	actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGACCTCATCCATCCTGGTGG	0.587													83	350					0	0	0.014410	0	0
PXK	54899	broad.mit.edu	37	3	58395827	58395827	+	Missense_Mutation	SNP	G	A	A	rs141886525		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:58395827G>A	uc003djz.1	+	16	1505	c.1406G>A	c.(1405-1407)CGA>CAA	p.R469Q	PXK_uc003djx.1_Missense_Mutation_p.R469Q|PXK_uc003djy.1_Missense_Mutation_p.R452Q|PXK_uc003dka.1_Missense_Mutation_p.R469Q|PXK_uc003dkb.1_Missense_Mutation_p.R386Q|PXK_uc003dkc.1_Missense_Mutation_p.R452Q|PXK_uc011bfe.1_Missense_Mutation_p.R436Q|PXK_uc010hnj.1_Missense_Mutation_p.R436Q|PXK_uc003dkd.1_Missense_Mutation_p.R332Q|PXK_uc010hnk.1_Missense_Mutation_p.R243Q	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	469	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		AAGTCAAAACGATCTGCTCTT	0.403													24	71					0	0	0.024334	0	0
ACOX2	8309	broad.mit.edu	37	3	58519830	58519830	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:58519830G>A	uc003dkl.2	-	4	541	c.366C>T	c.(364-366)TTC>TTT	p.F122F		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	122					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		GGGCTCTCACGAAGACTCTGT	0.527													109	151					0	0	0.014410	0	0
FAM3D	131177	broad.mit.edu	37	3	58639463	58639463	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:58639463C>T	uc003dkq.2	-	3	356	c.59G>A	c.(58-60)TGG>TAG	p.W20*		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	20					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		AATAAACATCCATGTCGTGAC	0.567													59	242					0	0	0.014410	0	0
PTPRG	5793	broad.mit.edu	37	3	62204553	62204553	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:62204553C>T	uc003dlb.2	+	13	2903	c.2184C>T	c.(2182-2184)AGC>AGT	p.S728S	PTPRG_uc003dlc.2_Silent_p.S728S|PTPRG_uc011bfi.1_Silent_p.S3S	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	728	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		GAATGATAAGCCGCCCTGCTC	0.507													72	95					0	0	0.014410	0	0
CADPS	8618	broad.mit.edu	37	3	62501818	62501819	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:62501818_62501819CC>TT	uc003dll.2	-	16	2856_2857	c.2496_2497GG>AA	c.(2494-2499)GAGGAG>GAAAAG	p.E833K	CADPS_uc003dlk.1_Missense_Mutation_p.E337K|CADPS_uc003dlm.2_Missense_Mutation_p.E833K|CADPS_uc003dln.2_Missense_Mutation_p.E816K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	833	Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GTTTTTACCTCCTCTTGTGGCA	0.421													23	84					0	0	0.004672	0	0
ROBO1	6091	broad.mit.edu	37	3	78680377	78680377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:78680377G>A	uc003dqe.2	-	25	3768	c.3560C>T	c.(3559-3561)CCT>CTT	p.P1187L	ROBO1_uc003dqb.2_Missense_Mutation_p.P1148L|ROBO1_uc003dqc.2_Missense_Mutation_p.P1087L|ROBO1_uc003dqd.2_Missense_Mutation_p.P1142L|ROBO1_uc010hoh.2_Missense_Mutation_p.P379L|ROBO1_uc011bgl.1_Missense_Mutation_p.P759L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1187	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TGGGGGAGGAGGAAGCAGGTC	0.478													13	15					0	0	0.016723	0	0
ROBO1	6091	broad.mit.edu	37	3	78710221	78710221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:78710221C>T	uc003dqe.2	-	16	2487	c.2279G>A	c.(2278-2280)GGA>GAA	p.G760E	ROBO1_uc003dqb.2_Missense_Mutation_p.G721E|ROBO1_uc003dqc.2_Missense_Mutation_p.G724E|ROBO1_uc003dqd.2_Missense_Mutation_p.G724E|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc011bgl.1_Missense_Mutation_p.G332E|ROBO1_uc003dqf.1_Missense_Mutation_p.G439E	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	760	Extracellular (Potential).|Fibronectin type-III 2.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		ACTATCTGCTCCTTGAAATTC	0.388													10	16					0	0	0.006214	0	0
POU1F1	5449	broad.mit.edu	37	3	87313549	87313549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:87313549C>T	uc003dqq.1	-	3	453	c.328G>A	c.(328-330)GAA>AAA	p.E110K	POU1F1_uc010hoj.1_Missense_Mutation_p.E136K	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	110					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		CGCCTGAGTTCCTGCTTGAAA	0.433													58	80					0	0	0.014410	0	0
ZNF654	55279	broad.mit.edu	37	3	88188717	88188717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:88188717C>T	uc003dqv.2	+	1	456	c.257C>T	c.(256-258)TCT>TTT	p.S86F	CGGBP1_uc003dqu.2_Intron	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		AATGGGAATTCTGATAGTAAG	0.393													10	42					0	0	0.010729	0	0
EPHA3	2042	broad.mit.edu	37	3	89462371	89462371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:89462371G>A	uc003dqy.2	+	10	2068	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	615	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GTTTGCCAAGGAATTGGATGC	0.423										TSP Lung(6;0.00050)			15	71					0	0	0.028581	0	0
CRYBG3	131544	broad.mit.edu	37	3	97631107	97631107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:97631107G>A	uc003drx.2	+	13	2321	c.2257G>A	c.(2257-2259)GTT>ATT	p.V753I		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						TTCTTTTAAAGTTCTTCGAGG	0.338													38	58					0	0	0.021022	0	0
OR5H1	26341	broad.mit.edu	37	3	97852004	97852004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:97852004C>T	uc011bgt.1	+	1	463	c.463C>T	c.(463-465)CAT>TAT	p.H155Y		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGGTATTCTTCATGCTTTAAT	0.373													10	46					0	0	0.016723	0	0
OR5H15	403274	broad.mit.edu	37	3	97888017	97888017	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:97888017C>T	uc011bgu.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGCTTTAATCCATGAAGGAT	0.358													9	64					0	0	0.008291	0	0
IMPG2	50939	broad.mit.edu	37	3	100949962	100949962	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:100949962G>A	uc003duq.1	-	16	3464	c.3261C>T	c.(3259-3261)TAC>TAT	p.Y1087Y	IMPG2_uc011bhe.1_Silent_p.Y950Y|IMPG2_uc010hpj.1_Intron	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	1087	Extracellular (Potential).|EGF-like 2.|Hyaluronan-binding motif involved in chondroitin sulfate C-binding (By similarity).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GCTTGCCTCGGTACCACCAGT	0.493													99	132					0	0	0.014410	0	0
IMPG2	50939	broad.mit.edu	37	3	100963295	100963295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:100963295G>A	uc003duq.1	-	13	2083	c.1880C>T	c.(1879-1881)CCA>CTA	p.P627L	IMPG2_uc011bhe.1_Missense_Mutation_p.P490L	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	627	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CTTGGACAGTGGTTCAGCGCT	0.438													69	72					0	0	0.014410	0	0
IMPG2	50939	broad.mit.edu	37	3	100986371	100986371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:100986371G>A	uc003duq.1	-	9	1095	c.892C>T	c.(892-894)CCC>TCC	p.P298S	IMPG2_uc011bhe.1_Missense_Mutation_p.P161S	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	298	Extracellular (Potential).|SEA 1.				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TTTTCCTTGGGGGACCTGAAA	0.363													23	96					0	0	0.027356	0	0
TRAT1	50852	broad.mit.edu	37	3	108572476	108572476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:108572476G>A	uc003dxi.1	+	6	457	c.313G>A	c.(313-315)GAA>AAA	p.E105K	TRAT1_uc010hpx.1_Missense_Mutation_p.E68K	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	105	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						GGCAACCAATGAAACACAGAT	0.403													58	89					0	0	0.014410	0	0
MORC1	27136	broad.mit.edu	37	3	108682428	108682428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:108682428C>T	uc003dxl.2	-	27	2719	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	MORC1_uc011bhn.1_Missense_Mutation_p.E857K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	878					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTTTTTTTTCATATTGGACC	0.279													13	70					0	0	0.013537	0	0
MORC1	27136	broad.mit.edu	37	3	108751586	108751586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:108751586G>A	uc003dxl.2	-	16	1633	c.1546C>T	c.(1546-1548)CCC>TCC	p.P516S	MORC1_uc011bhn.1_Missense_Mutation_p.P516S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	516	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AAGCGGTTGGGATTATTAGCA	0.289													26	37					0	0	0.024334	0	0
MORC1	27136	broad.mit.edu	37	3	108782032	108782032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:108782032C>T	uc003dxl.2	-	10	949	c.862G>A	c.(862-864)GAA>AAA	p.E288K	MORC1_uc011bhn.1_Missense_Mutation_p.E288K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	288	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTTTAACTTCATCTTTAAAT	0.254													49	83					0	0	0.014410	0	0
DPPA2	151871	broad.mit.edu	37	3	109031453	109031453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:109031453C>T	uc003dxo.2	-	3	367	c.120G>A	c.(118-120)ATG>ATA	p.M40I		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	40						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CGCTTGGTTCCATTTGTTCCA	0.413													139	183					0	0	0.014410	0	0
CD96	10225	broad.mit.edu	37	3	111263947	111263947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:111263947C>T	uc003dxw.2	+	2	286	c.116C>T	c.(115-117)TCT>TTT	p.S39F	CD96_uc003dxv.2_Missense_Mutation_p.S39F|CD96_uc003dxx.2_Missense_Mutation_p.S39F|CD96_uc010hpy.1_Missense_Mutation_p.S39F	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	39	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						ACACTTGGCTCTGATGTCAAC	0.403									Opitz_Trigonocephaly_syndrome				72	92					0	0	0.014410	0	0
CD96	10225	broad.mit.edu	37	3	111298075	111298075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:111298075G>A	uc003dxw.2	+	5	963	c.793G>A	c.(793-795)GTT>ATT	p.V265I	CD96_uc003dxv.2_Missense_Mutation_p.V249I|CD96_uc003dxx.2_Missense_Mutation_p.V249I|CD96_uc010hpy.1_Missense_Mutation_p.V249I	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	265	Extracellular (Potential).				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						CACAGTCAAGGTTTTTGGTAA	0.502									Opitz_Trigonocephaly_syndrome				36	80					0	0	0.019004	0	0
CD200R1	131450	broad.mit.edu	37	3	112648058	112648058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:112648058C>T	uc003dzk.1	-	3	663	c.430G>A	c.(430-432)GGA>AGA	p.G144R	CD200R1_uc003dzj.1_Missense_Mutation_p.G167R|CD200R1_uc011bhx.1_Missense_Mutation_p.G122R|CD200R1_uc003dzl.1_Missense_Mutation_p.G167R|CD200R1_uc003dzm.1_Missense_Mutation_p.G144R	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	144	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						AGGTGATATCCACGATGGAAA	0.428													27	108					0	0	0.006320	0	0
WDR52	55779	broad.mit.edu	37	3	113135415	113135415	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:113135415G>A	uc003eae.1	-	6	676	c.630C>T	c.(628-630)ATC>ATT	p.I210I		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	210										central_nervous_system(1)	1						ATTCATAGATGATAATATCTG	0.318													8	40					0	0	0.006214	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113672624	113672624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:113672624C>T	uc003eau.2	+	3	538	c.239C>T	c.(238-240)CCT>CTT	p.P80L	ZDHHC23_uc003eav.2_Missense_Mutation_p.P74L	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	80						integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						CTCCGAATTCCTTGGCTTAGG	0.458													126	158					0	0	0.014410	0	0
KIAA1407	57577	broad.mit.edu	37	3	113729778	113729778	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:113729778C>T	uc003eax.2	-	9	1401	c.1254G>A	c.(1252-1254)CTG>CTA	p.L418L	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Silent_p.L396L|KIAA1407_uc011bip.1_Silent_p.L405L	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	418	Potential.									ovary(2)	2						GCTCTCTCTTCAGGAGCTCGG	0.498													62	85					0	0	0.014410	0	0
B4GALT4	8702	broad.mit.edu	37	3	118935164	118935165	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:118935164_118935165GG>AA	uc003ecg.2	-	7	1465_1466	c.824_825CC>TT	c.(823-825)TCC>TTT	p.S275F	B4GALT4_uc003ece.1_Missense_Mutation_p.S275F|B4GALT4_uc003ecf.2_RNA|B4GALT4_uc003ech.2_Missense_Mutation_p.S275F|B4GALT4_uc003eci.2_Missense_Mutation_p.S275F|B4GALT4_uc011biy.1_RNA	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	275	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	GCAGGGGCCGGGAAATTTTCAT	0.411													21	112					0	0	0.004672	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119120848	119120848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:119120848C>T	uc003ecj.3	+	10	1781	c.1249C>T	c.(1249-1251)CGC>TGC	p.R417C		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	417					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GAGCAGTGATCGCAGCCATCT	0.647													33	139					0	0	0.010818	0	0
CD80	941	broad.mit.edu	37	3	119256207	119256207	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:119256207C>T	uc003ecq.2	-	4	872	c.477G>A	c.(475-477)AGG>AGA	p.R159R	CD80_uc010hqt.1_Silent_p.R159R|CD80_uc010hqu.1_Intron	NM_005191	NP_005182	P33681	CD80_HUMAN	CD80 antigen precursor	159	Extracellular (Potential).|Ig-like C2-type.				interspecies interaction between organisms|intracellular signal transduction|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of signal transduction|positive regulation of T-helper 1 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation	intracellular	coreceptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2					Abatacept(DB01281)	AGCAAATTATCCTTCTAATAT	0.363													48	61					0	0	0.014410	0	0
STXBP5L	9515	broad.mit.edu	37	3	120973834	120973834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:120973834G>A	uc003eec.3	+	16	1674	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	STXBP5L_uc011bji.1_Missense_Mutation_p.E512K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	512					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AATTGTAGAGGAAGACCCATT	0.363													26	87					0	0	0.024334	0	0
STXBP5L	9515	broad.mit.edu	37	3	121001168	121001168	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:121001168C>T	uc003eec.3	+	20	2306	c.2166C>T	c.(2164-2166)ATC>ATT	p.I722I	STXBP5L_uc011bji.1_Intron	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	722					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CGAAACGGATCCGTACTTCCT	0.403													9	35					0	0	0.008291	0	0
POLQ	10721	broad.mit.edu	37	3	121260236	121260236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:121260236G>A	uc003eee.3	-	3	563	c.434C>T	c.(433-435)CCC>CTC	p.P145L		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	145	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AGAAACAAAGGGAAGAATAAA	0.378								DNA_polymerases_(catalytic_subunits)					188	325					0	0	0.014410	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659684	121659684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:121659684G>A	uc003eep.2	+	22	2173	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	SLC15A2_uc011bjn.1_Missense_Mutation_p.E643K	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	674					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	GCAGTGGGCCGAATTCATTTT	0.473													62	134					0	0	0.014410	0	0
CASR	846	broad.mit.edu	37	3	122001074	122001074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:122001074G>A	uc003eev.3	+	6	2095	c.1723G>A	c.(1723-1725)GAT>AAT	p.D575N	CASR_uc003eew.3_Missense_Mutation_p.D585N	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	575	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGAGTATAGTGATGAGACAGG	0.602													89	139					0	0	0.014410	0	0
CASR	846	broad.mit.edu	37	3	122003412	122003412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:122003412G>A	uc003eev.3	+	7	2983	c.2611G>A	c.(2611-2613)GAG>AAG	p.E871K	CASR_uc003eew.3_Missense_Mutation_p.E881K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	871	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CACCATCGAGGAGGTGCGTTG	0.607													59	54					0	0	0.014410	0	0
PARP14	54625	broad.mit.edu	37	3	122404132	122404132	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:122404132C>T	uc003efq.3	+	2	347	c.288C>T	c.(286-288)ATC>ATT	p.I96I		NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	96					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CAGATGAAATCGATCATGTCT	0.413													22	76					0	0	0.016522	0	0
SEMA5B	54437	broad.mit.edu	37	3	122645393	122645394	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:122645393_122645394CC>AT	uc003efz.1	-	9	1285_1286	c.981_982GG>AT	c.(979-984)GGGGGC>GGATGC	p.G328C	SEMA5B_uc011bju.1_Missense_Mutation_p.G270C|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.G328C|SEMA5B_uc010hro.1_Missense_Mutation_p.G270C|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	328	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		AGGAATCGGCCCCCCACGTCAT	0.614													15	63					0	0	0.004672	0	0
ADCY5	111	broad.mit.edu	37	3	123023025	123023025	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:123023025G>A	uc003egh.1	-	13	2448	c.2448C>T	c.(2446-2448)TTC>TTT	p.F816F	ADCY5_uc003egg.1_Silent_p.F449F|ADCY5_uc003egi.1_Silent_p.F375F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	816					activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTGgggaggggaagagctagg	0.413													12	55					0	0	0.013537	0	0
MYLK	4638	broad.mit.edu	37	3	123451911	123451911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:123451911C>T	uc003ego.2	-	11	1630	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	MYLK_uc011bjw.1_Missense_Mutation_p.E450K|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Missense_Mutation_p.E450K|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Missense_Mutation_p.E274K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	450	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GGGGTGCCTTCCAGGAACCAG	0.572													20	34					0	0	0.018920	0	0
KALRN	8997	broad.mit.edu	37	3	124153367	124153367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124153367G>A	uc003ehg.2	+	17	3164	c.3037G>A	c.(3037-3039)GAA>AAA	p.E1013K	KALRN_uc010hrv.1_Missense_Mutation_p.E1004K|KALRN_uc003ehf.1_Missense_Mutation_p.E1013K|KALRN_uc011bjy.1_Missense_Mutation_p.E1004K|KALRN_uc003ehh.1_Missense_Mutation_p.E359K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1013					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CAAAACTTCTGAACAGGTGAG	0.517													14	54					0	0	0.016723	0	0
KALRN	8997	broad.mit.edu	37	3	124181391	124181391	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124181391C>T	uc003ehg.2	+	25	4063	c.3936C>T	c.(3934-3936)ACC>ACT	p.T1312T	KALRN_uc010hrv.1_Silent_p.T1303T|KALRN_uc003ehf.1_Silent_p.T1312T|KALRN_uc011bjy.1_Silent_p.T1303T|KALRN_uc003ehh.1_Silent_p.T658T	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1312	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGGAAATGACCAGTGGTGTGG	0.443													21	30					0	0	0.014323	0	0
KALRN	8997	broad.mit.edu	37	3	124376396	124376396	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124376396G>T	uc003ehg.2	+	40	6088	c.5961G>T	c.(5959-5961)AAG>AAT	p.K1987N	KALRN_uc003ehi.2_Missense_Mutation_p.K328N|KALRN_uc003ehk.2_Missense_Mutation_p.K290N|KALRN_uc011bjz.1_Missense_Mutation_p.K79N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1986	DH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACTGGCATAAGGAGTAAGTGT	0.468													40	70					2.2871e-25	2.33193e-25	0.007835	1	0
ITGB5	3693	broad.mit.edu	37	3	124515329	124515329	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124515329G>A	uc003eho.2	-	10	1896	c.1599C>T	c.(1597-1599)TGC>TGT	p.C533C	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	533	Extracellular (Potential).|II.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		CGAAGCAGGAGCACTGGTTGC	0.597													102	115					0	0	0.014410	0	0
HEG1	57493	broad.mit.edu	37	3	124732623	124732623	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124732623G>A	uc003ehs.3	-	6	1868	c.1800C>T	c.(1798-1800)TCC>TCT	p.S600S	HEG1_uc011bke.1_Silent_p.S700S	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	600	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						CATGAAAAAAGGAGGAATACT	0.413													31	72					0	0	0.008361	0	0
HEG1	57493	broad.mit.edu	37	3	124748248	124748248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:124748248G>A	uc003ehs.3	-	2	469	c.401C>T	c.(400-402)TCA>TTA	p.S134L	HEG1_uc011bke.1_Missense_Mutation_p.S134L	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	134	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GGACACTGTTGAAAAGTCCTC	0.483													61	106					0	0	0.014410	0	0
OSBPL11	114885	broad.mit.edu	37	3	125298879	125298879	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:125298879A>G	uc003eic.2	-	3	976	c.239T>C	c.(238-240)TTT>TCT	p.F80S		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	80	PH.				lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						GTTTAAAACAAAAAACCTGTA	0.343													46	55					0	0	0.013114	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125828946	125828946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:125828946C>T	uc003eim.1	-	20	2378	c.2188G>A	c.(2188-2190)GAG>AAG	p.E730K	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.E629K|ALDH1L1_uc003ein.1_Missense_Mutation_p.E265K	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	730	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTCCGCACCTCTTCTACCTGC	0.577													80	100					0	0	0.014410	0	0
KLF15	28999	broad.mit.edu	37	3	126071118	126071118	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:126071118G>A	uc011bkk.1	-	2	830	c.648C>T	c.(646-648)CCC>CCT	p.P216P		NM_014079	NP_054798	Q9UIH9	KLF15_HUMAN	Kruppel-like factor 15	216						nucleus	DNA binding|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(114;0.147)		ACACTGGGATGGGGCCATCAG	0.677													13	25					0	0	0.020292	0	0
CCDC37	348807	broad.mit.edu	37	3	126142196	126142196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:126142196G>A	uc003eiu.1	+	12	1210	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K	CCDC37_uc010hsg.1_Missense_Mutation_p.E372K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	371										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		CCCCACGCAGGAGGACACCGA	0.667													20	31					0	0	0.018920	0	0
PLXNA1	5361	broad.mit.edu	37	3	126748745	126748745	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:126748745C>T	uc003ejg.2	+	27	4834	c.4830C>T	c.(4828-4830)CCC>CCT	p.P1610P	PLXNA1_uc003ejh.2_Silent_p.P278P	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1633	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CCAGCAGCCCCGACAGCCTGC	0.701													22	72					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	3	126915578	126915579	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:126915578_126915579CC>TT	uc003eji.1	+	2	290_291	c.50_51CC>TT	c.(49-51)GCC>GTT	p.A17V						RecName: Full=Putative uncharacterized protein C3orf56;																		GTCCGCCGTGCCTTCGAGGCCT	0.609													9	29					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	3	126915582	126915582	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:126915582C>T	uc003eji.1	+	2	294	c.54C>T	c.(52-54)TTC>TTT	p.F18F						RecName: Full=Putative uncharacterized protein C3orf56;																		GCCGTGCCTTCGAGGCCTCCG	0.612													14	29					0	0	0.020292	0	0
MCM2	4171	broad.mit.edu	37	3	127336840	127336840	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:127336840C>T	uc003ejp.2	+	12	1986	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	MCM2_uc011bkm.1_Silent_p.F513F|MCM2_uc010hsl.2_Intron|MCM2_uc011bkn.1_Silent_p.F596F	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	643	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						CGCTGACTTTCTCTGAGAACG	0.587													31	49					0	0	0.017118	0	0
C3orf27	23434	broad.mit.edu	37	3	128292266	128292266	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:128292266G>A	uc003ekq.2	-	3	1274	c.307C>T	c.(307-309)CTG>TTG	p.L103L		NM_007354	NP_031380	O15544	GR6_HUMAN	putative GR6 protein	103											0				GBM - Glioblastoma multiforme(114;0.176)		TGGCACAGCAGAGTCCTGGCA	0.577													80	112					0	0	0.014410	0	0
COL29A1	256076	broad.mit.edu	37	3	130159348	130159348	+	Missense_Mutation	SNP	G	A	A	rs113660207		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:130159348G>A	uc010htj.1	+	35	6660	c.6166G>A	c.(6166-6168)GCA>ACA	p.A2056T	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.A95T	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2056	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						AAATGGAGAAGCAACAATTGG	0.413													40	49					0	0	0.008740	0	0
COL6A6	131873	broad.mit.edu	37	3	130283890	130283890	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:130283890C>T	uc010htl.2	+	3	745	c.714C>T	c.(712-714)ATC>ATT	p.I238I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	238	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATATGTCAATCAATGGAAGTG	0.428													157	199					0	0	0.014410	0	0
COL6A6	131873	broad.mit.edu	37	3	130293024	130293024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:130293024G>A	uc010htl.2	+	7	3233	c.3202G>A	c.(3202-3204)GAA>AAA	p.E1068K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1068	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATTTCAGATTGAAAACATCAA	0.468													55	54					0	0	0.014410	0	0
DNAJC13	23317	broad.mit.edu	37	3	132203454	132203454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:132203454C>T	uc003eor.2	+	29	3270	c.3205C>T	c.(3205-3207)CGG>TGG	p.R1069W		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1069							heat shock protein binding			ovary(1)|breast(1)	2						TGCCATCATTCGGCCTCTACC	0.358													64	80					0	0	0.014410	0	0
TF	7018	broad.mit.edu	37	3	133467361	133467361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:133467361C>T	uc003epu.1	+	7	1877	c.149C>T	c.(148-150)CCA>CTA	p.P50L	TF_uc011bls.1_Missense_Mutation_p.P50L|TF_uc011blt.1_Intron|TF_uc003epw.1_Intron|TF_uc010htv.1_RNA|TF_uc003epv.1_Missense_Mutation_p.P50L	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	50	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	AGCGTCATTCCATCCGATGGT	0.512													30	105					0	0	0.008361	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133661578	133661578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:133661578G>A	uc003eqa.3	-	11	1770	c.1496C>T	c.(1495-1497)TCC>TTC	p.S499F	SLCO2A1_uc003eqb.3_Missense_Mutation_p.S423F|SLCO2A1_uc011blv.1_Missense_Mutation_p.S318F	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	499	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						TGCTGAAGCGGATCCCCCGGT	0.522													47	162					0	0	0.014410	0	0
EPHB1	2047	broad.mit.edu	37	3	134920399	134920399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:134920399G>A	uc003eqt.2	+	12	2434	c.2214G>A	c.(2212-2214)ATG>ATA	p.M738I	EPHB1_uc003equ.2_Missense_Mutation_p.M299I	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	738	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TGGCTGAGATGAATTATGTGC	0.527													103	155					0	0	0.014410	0	0
IL20RB	53833	broad.mit.edu	37	3	136714374	136714374	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:136714374C>T	uc003eri.1	+	6	1050	c.801C>T	c.(799-801)CCC>CCT	p.P267P	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Silent_p.P125P	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	267	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)	1						CCTGTTGCCCCGTGGTGGTCC	0.522													232	319					0	0	0.014410	0	0
CEP70	80321	broad.mit.edu	37	3	138248045	138248045	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:138248045T>A	uc003esl.2	-	10	1063	c.865A>T	c.(865-867)ACC>TCC	p.T289S	CEP70_uc011bmk.1_Missense_Mutation_p.T269S|CEP70_uc011bml.1_Missense_Mutation_p.T271S|CEP70_uc011bmm.1_Missense_Mutation_p.T137S|CEP70_uc003esm.2_Missense_Mutation_p.T289S	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	289	Potential.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						TCTCACCTGGTTTCCAAATCT	0.209													87	288					0	0	0.014410	0	0
CEP70	80321	broad.mit.edu	37	3	138251366	138251366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:138251366G>A	uc003esl.2	-	8	880	c.682C>T	c.(682-684)CAT>TAT	p.H228Y	CEP70_uc011bmk.1_Missense_Mutation_p.H208Y|CEP70_uc011bml.1_Missense_Mutation_p.H210Y|CEP70_uc011bmm.1_Missense_Mutation_p.H76Y|CEP70_uc003esm.2_Missense_Mutation_p.H228Y	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	228					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						CTTTGTGTATGAATTTTTCTA	0.284													102	181					0	0	0.014410	0	0
PIK3CB	5291	broad.mit.edu	37	3	138453617	138453618	+	Missense_Mutation	DNP	GG	AA	AA	rs146908661	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:138453617_138453618GG>AA	uc011bmq.1	-	5	830_831	c.830_831CC>TT	c.(829-831)GCC>GTT	p.A277V		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	277	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						AATGGGGCAGGGCTCTGTTCAT	0.386													53	236					0	0	0.004672	0	0
PRR23A	729627	broad.mit.edu	37	3	138724853	138724853	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:138724853C>T	uc011bms.1	-	1	258	c.258G>A	c.(256-258)TCG>TCA	p.S86S		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	86											0						CTCGCAGGATCGACGTTGGCG	0.662													10	45					0	0	0.006214	0	0
PRR23B	389151	broad.mit.edu	37	3	138739004	138739004	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:138739004C>A	uc003esy.1	-	1	765	c.500G>T	c.(499-501)CGG>CTG	p.R167L		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	167										breast(1)	1						GGAGTCCATCCGGAGCTCCGG	0.647													31	88					9.93527e-08	1.00745e-07	0.013726	1	0
NMNAT3	349565	broad.mit.edu	37	3	139297777	139297777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:139297777C>T	uc003etj.2	-	2	270	c.230G>A	c.(229-231)TGG>TAG	p.W77*	NMNAT3_uc003etk.2_Nonsense_Mutation_p.W40*|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	77					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						CACCCGGATCCAGTCGGATGT	0.582													15	73					0	0	0.007413	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277513	140277513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:140277513C>T	uc003etn.2	+	12	2045	c.1855C>T	c.(1855-1857)CCT>TCT	p.P619S		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	619	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CATCAGTATCCCTGAGGTAGA	0.532										HNSCC(16;0.037)			30	79					0	0	0.009535	0	0
TRIM42	287015	broad.mit.edu	37	3	140407357	140407357	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:140407357G>A	uc003eto.1	+	3	2024	c.1833G>A	c.(1831-1833)CAG>CAA	p.Q611Q		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	611	Fibronectin type-III.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TTATCTACCAGACTCTGGTGT	0.532													38	171					0	0	0.025465	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142567290	142567290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:142567290G>A	uc003evd.2	-	3	413	c.217C>T	c.(217-219)CTC>TTC	p.L73F		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	73	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						CGGAAATTGAGAACGACTACT	0.453													64	96					0	0	0.014410	0	0
CHST2	9435	broad.mit.edu	37	3	142840669	142840669	+	Silent	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:142840669G>T	uc003evm.2	+	2	1900	c.1011G>T	c.(1009-1011)GTG>GTT	p.V337V		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	337	Lumenal (Potential).|PAPS (Probable).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						CCCGCGCGGTGGCGAGTTCAC	0.682													9	31					5.4927e-09	5.57306e-09	0.004482	1	0
CPA3	1359	broad.mit.edu	37	3	148583291	148583291	+	Missense_Mutation	SNP	G	A	A	rs145828911		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:148583291G>A	uc003ewm.2	+	2	152	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	34					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding	p.E34*(1)|p.E34K(1)		breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			GCCCCAGGATGAAAAACAAGC	0.383													34	53					0	0	0.023175	0	0
MED12L	116931	broad.mit.edu	37	3	150881731	150881731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:150881731G>A	uc003eyp.2	+	8	1197	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.E387K|MED12L_uc003eyo.2_Missense_Mutation_p.E387K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	387					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCCACAAATGAAAATAAGAG	0.517													25	86					0	0	0.018920	0	0
GPR171	29909	broad.mit.edu	37	3	150916315	150916315	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:150916315G>T	uc003eyq.3	-	3	1099	c.859C>A	c.(859-861)CAC>AAC	p.H287N	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	287	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTGAGAGGTGATAGTACAGG	0.428													21	84					5.35356e-11	5.43519e-11	0.016522	1	0
MED12L	116931	broad.mit.edu	37	3	151085540	151085540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:151085540C>T	uc003eyp.2	+	22	3367	c.3329C>T	c.(3328-3330)TCT>TTT	p.S1110F	MED12L_uc011bnz.1_Missense_Mutation_p.S970F|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.S273F	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1110					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCACTTCCCTCTCTTCTAGCA	0.453													80	123					0	0	0.014410	0	0
IGSF10	285313	broad.mit.edu	37	3	151163411	151163411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:151163411C>T	uc011bod.1	-	4	4358	c.4358G>A	c.(4357-4359)AGG>AAG	p.R1453K		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1453					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GATTGCTTTCCTAGTTGTGGT	0.448													97	161					0	0	0.014410	0	0
AADAC	13	broad.mit.edu	37	3	151531958	151531958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:151531958G>A	uc003eze.2	+	1	98	c.8G>A	c.(7-9)AGA>AAA	p.R3K		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	3	Cytoplasmic (Potential).			R -> M (in Ref. 6; AA sequence).	positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			ACCATGGGAAGAAAATCGCTG	0.423													35	173					0	0	0.023175	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598433	151598433	+	Silent	SNP	C	T	T	rs145165680		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:151598433C>T	uc003ezf.1	+	3	201	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	34	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GGATTGAGTTCGTTGTGGGAG	0.423													49	194					0	0	0.014410	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599328	151599328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:151599328G>A	uc003ezf.1	+	3	1096	c.997G>A	c.(997-999)GAA>AAA	p.E333K		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	333	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	TTCATTCAGAGAAAAGTGAGG	0.413													33	55					0	0	0.019004	0	0
MME	4311	broad.mit.edu	37	3	154857980	154857980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:154857980G>A	uc010hvr.1	+	10	1067	c.856G>A	c.(856-858)GCT>ACT	p.A286T	MME_uc003fab.1_Missense_Mutation_p.A286T|MME_uc003fac.1_Missense_Mutation_p.A286T|MME_uc003fad.1_Missense_Mutation_p.A286T|MME_uc003fae.1_Missense_Mutation_p.A286T	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	286	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AAATCCATAGGCTACGGCTAA	0.299													14	23					0	0	0.028581	0	0
RARRES1	5918	broad.mit.edu	37	3	158428691	158428691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:158428691C>T	uc003fci.2	-	3	442	c.371G>A	c.(370-372)GGG>GAG	p.G124E	RARRES1_uc003fcj.2_Missense_Mutation_p.G124E	NM_206963	NP_996846	P49788	TIG1_HUMAN	retinoic acid receptor responder (tazarotene	124	Extracellular (Potential).				negative regulation of cell proliferation	integral to membrane					0			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)		Tretinoin(DB00755)	AGAACATTTCCCCAAACGTCC	0.443													128	158					0	0	0.014410	0	0
SI	6476	broad.mit.edu	37	3	164716441	164716441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164716441C>T	uc003fei.2	-	38	4489	c.4427G>A	c.(4426-4428)GGA>GAA	p.G1476E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1476	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCCTCTTTTTCCAGTTGTCTT	0.388										HNSCC(35;0.089)			19	17					0	0	0.008871	0	0
SI	6476	broad.mit.edu	37	3	164735827	164735827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164735827G>A	uc003fei.2	-	29	3513	c.3451C>T	c.(3451-3453)CCC>TCC	p.P1151S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1151	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATGTAATAGGGATGAAATCCA	0.313										HNSCC(35;0.089)			11	46					0	0	0.013537	0	0
SI	6476	broad.mit.edu	37	3	164777010	164777010	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164777010G>A	uc003fei.2	-	11	1286	c.1224C>T	c.(1222-1224)CTC>CTT	p.L408L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	408	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CAAATTGAGGGAGTCCGTTAA	0.338										HNSCC(35;0.089)			21	24					0	0	0.014323	0	0
SLITRK3	22865	broad.mit.edu	37	3	164905801	164905801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164905801C>T	uc003fej.3	-	2	3262	c.2818G>A	c.(2818-2820)GGA>AGA	p.G940R	SLITRK3_uc003fek.2_Missense_Mutation_p.G940R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	940	Cytoplasmic (Potential).			G -> E (in Ref. 1; BAA74871).		integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						AAGCCCTTTCCAGCCGAGAAG	0.502										HNSCC(40;0.11)			170	223					0	0	0.014410	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907726	164907726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164907726G>A	uc003fej.3	-	2	1337	c.893C>T	c.(892-894)TCG>TTG	p.S298L	SLITRK3_uc003fek.2_Missense_Mutation_p.S298L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	298	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ACTTGATGACGAATGTGGAAT	0.433										HNSCC(40;0.11)			96	127					0	0	0.014410	0	0
SLITRK3	22865	broad.mit.edu	37	3	164908087	164908087	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:164908087G>A	uc003fej.3	-	2	976	c.532C>T	c.(532-534)CTG>TTG	p.L178L	SLITRK3_uc003fek.2_Silent_p.L178L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	178	LRR 5.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TTTAAAATCAGAACCCTCAAT	0.388										HNSCC(40;0.11)			70	89					0	0	0.014410	0	0
MECOM	2122	broad.mit.edu	37	3	168833467	168833467	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:168833467C>T	uc003ffi.3	-	7	1898	c.1629G>A	c.(1627-1629)AAG>AAA	p.K543K	MECOM_uc010hwk.1_Silent_p.K566K|MECOM_uc003ffj.3_Silent_p.K608K|MECOM_uc011bpi.1_Silent_p.K544K|MECOM_uc003ffn.3_Silent_p.K543K|MECOM_uc003ffk.2_Silent_p.K543K|MECOM_uc003ffl.2_Silent_p.K703K|MECOM_uc011bpj.1_Silent_p.K731K|MECOM_uc011bpk.1_Silent_p.K533K|MECOM_uc010hwn.2_Silent_p.K731K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	543				K -> R (in Ref. 4; CAE45952).	apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCTGCAGTTTCTTTACTTCAC	0.473													59	79					0	0	0.014410	0	0
LRRC31	79782	broad.mit.edu	37	3	169574611	169574611	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:169574611C>A	uc003fgc.1	-	4	614	c.537G>T	c.(535-537)TGG>TGT	p.W179C	LRRC31_uc010hwp.1_Missense_Mutation_p.W123C	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	179										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			CTTTACTGTTCCAAGACAAAT	0.423													86	112					7.49063e-41	7.65857e-41	0.014410	1	0
PRKCI	5584	broad.mit.edu	37	3	169999701	169999701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:169999701G>A	uc003fgs.2	+	11	1250	c.1012G>A	c.(1012-1014)GGA>AGA	p.G338R		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	338	Protein kinase.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TGTAAATGGAGGAGACCTAAT	0.358													121	172					0	0	0.014410	0	0
SLC7A14	57709	broad.mit.edu	37	3	170219102	170219102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:170219102G>A	uc003fgz.2	-	3	653	c.337C>T	c.(337-339)CCC>TCC	p.P113S	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	113						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			GTGGTCTTGGGGACTCGAACT	0.507													28	51					0	0	0.008361	0	0
TNIK	23043	broad.mit.edu	37	3	170846571	170846571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:170846571C>T	uc003fhh.2	-	16	2050	c.1705G>A	c.(1705-1707)GAG>AAG	p.E569K	TNIK_uc003fhi.2_Intron|TNIK_uc003fhj.2_Missense_Mutation_p.E540K|TNIK_uc003fhk.2_Missense_Mutation_p.E569K|TNIK_uc003fhl.2_Intron|TNIK_uc003fhm.2_Intron|TNIK_uc003fhn.2_Missense_Mutation_p.E540K|TNIK_uc003fho.2_Intron	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	569	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CTGAAGGACTCCGACCTTGGG	0.567													11	48					0	0	0.013537	0	0
TNIK	23043	broad.mit.edu	37	3	170912325	170912325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:170912325C>T	uc003fhh.2	-	5	751	c.406G>A	c.(406-408)GAA>AAA	p.E136K	TNIK_uc003fhi.2_Missense_Mutation_p.E136K|TNIK_uc003fhj.2_Missense_Mutation_p.E136K|TNIK_uc003fhk.2_Missense_Mutation_p.E136K|TNIK_uc003fhl.2_Missense_Mutation_p.E136K|TNIK_uc003fhm.2_Missense_Mutation_p.E136K|TNIK_uc003fhn.2_Missense_Mutation_p.E136K|TNIK_uc003fho.2_Missense_Mutation_p.E136K	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	136	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CGTAAGATTTCCCTGCAGATG	0.458													47	188					0	0	0.014410	0	0
PLD1	5337	broad.mit.edu	37	3	171320910	171320910	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:171320910A>G	uc003fhs.2	-	27	3299	c.3183T>C	c.(3181-3183)GTT>GTC	p.V1061V	PLD1_uc003fht.2_Silent_p.V1023V	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	1061					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CTTTGGTCCCAACAGAAGGCA	0.473													13	65					0	0	0.020292	0	0
GHSR	2693	broad.mit.edu	37	3	172163036	172163036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:172163036C>T	uc003fib.1	-	2	1016	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E		NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	339	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GGGTTCGAATCCCAGAAGTCT	0.483													55	191					0	0	0.014410	0	0
GHSR	2693	broad.mit.edu	37	3	172165763	172165763	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:172165763G>T	uc003fib.1	-	1	441	c.441C>A	c.(439-441)TTC>TTA	p.F147L	GHSR_uc011bpv.1_Missense_Mutation_p.F147L	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	147	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CCCGGAGTGGGAAGCAGATGG	0.622													23	61					4.26978e-12	4.33885e-12	0.018920	1	0
NLGN1	22871	broad.mit.edu	37	3	173999060	173999060	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:173999060C>T	uc003fio.1	+	7	2862	c.2439C>T	c.(2437-2439)CCC>CCT	p.P813P	NLGN1_uc003fip.1_Silent_p.P813P	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	830	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			ATCCCCATCCCCACCCCCATT	0.428													7	14					0	0	0.004482	0	0
CCDC39	339829	broad.mit.edu	37	3	180359974	180359974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:180359974C>T	uc010hxe.2	-	13	1796	c.1681G>A	c.(1681-1683)GAC>AAC	p.D561N	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	561	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			AAAAGATTGTCCTCTATCATC	0.284													8	30					0	0	0.003080	0	0
KLHL24	54800	broad.mit.edu	37	3	183390263	183390263	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:183390263C>T	uc003flv.2	+	7	1888	c.1593C>T	c.(1591-1593)TTC>TTT	p.F531F	KLHL24_uc003flw.2_Silent_p.F531F|KLHL24_uc003flx.2_Silent_p.F531F	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	531	Kelch 5.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			AGAATACATTCAGCCGTCAGG	0.353													30	32					0	0	0.008361	0	0
HTR3D	200909	broad.mit.edu	37	3	183755932	183755932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:183755932C>T	uc011bqv.1	+	6	784	c.784C>T	c.(784-786)CCA>TCA	p.P262S	HTR3D_uc003fmj.2_Missense_Mutation_p.P89S|HTR3D_uc011bqu.1_Missense_Mutation_p.P214S|HTR3D_uc010hxp.2_Missense_Mutation_p.P43S	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	262	Cytoplasmic (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GAATTGTGCCCCATTCAAGAT	0.522													47	89					0	0	0.014410	0	0
HTR3D	200909	broad.mit.edu	37	3	183755963	183755963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:183755963G>A	uc011bqv.1	+	6	815	c.815G>A	c.(814-816)AGC>AAC	p.S272N	HTR3D_uc003fmj.2_Missense_Mutation_p.S99N|HTR3D_uc011bqu.1_Missense_Mutation_p.S224N|HTR3D_uc010hxp.2_Missense_Mutation_p.S53N	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	272	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CTGGGCTACAGCGTCTTCCTG	0.507													62	93					0	0	0.014410	0	0
THPO	7066	broad.mit.edu	37	3	184090594	184090594	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:184090594T>C	uc003fol.1	-	6	984	c.769A>G	c.(769-771)ACT>GCT	p.T257A	THPO_uc003fom.1_Missense_Mutation_p.T253A|THPO_uc003fon.2_Missense_Mutation_p.N218S|THPO_uc011bro.1_Intron|THPO_uc003fop.2_Missense_Mutation_p.N214S|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Missense_Mutation_p.N178S	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	257					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGTCCACGAGTTCCATTCAAG	0.567													129	176					0	0	0.014410	0	0
THPO	7066	broad.mit.edu	37	3	184094044	184094044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:184094044C>T	uc003fol.1	-	2	219	c.4G>A	c.(4-6)GAG>AAG	p.E2K	THPO_uc003fom.1_Missense_Mutation_p.E2K|THPO_uc003fon.2_Missense_Mutation_p.E2K|THPO_uc011bro.1_Missense_Mutation_p.E2K|THPO_uc003fop.2_Missense_Mutation_p.E2K|THPO_uc011brp.1_Missense_Mutation_p.E2K|THPO_uc011brq.1_Missense_Mutation_p.E2K|THPO_uc003for.1_5'Flank|THPO_uc003fos.1_5'Flank|THPO_uc003fot.1_Missense_Mutation_p.E2K|THPO_uc003fou.1_Missense_Mutation_p.E2K	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	2					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCAGTCAGCTCCATTCTGGCC	0.612													110	440					0	0	0.014410	0	0
MAP3K13	9175	broad.mit.edu	37	3	185155255	185155255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:185155255G>A	uc010hyf.2	+	4	762	c.496G>A	c.(496-498)GAG>AAG	p.E166K	MAP3K13_uc011brt.1_Intron|MAP3K13_uc003fph.3_5'UTR|MAP3K13_uc011bru.1_Missense_Mutation_p.E22K|MAP3K13_uc003fpi.2_Missense_Mutation_p.E166K|MAP3K13_uc010hyg.2_Intron	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	166					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGTGCCATTTGAGGAGATCTC	0.512													83	120					0	0	0.014410	0	0
DGKG	1608	broad.mit.edu	37	3	185975698	185975698	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:185975698G>A	uc003fqa.2	-	17	1992	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	DGKG_uc003fqb.2_Silent_p.F446F|DGKG_uc003fqc.2_Silent_p.F460F|DGKG_uc011brx.1_Silent_p.F426F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	485	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CCAAAACACGGAAGTCTGGAG	0.463													86	136					0	0	0.014410	0	0
KNG1	3827	broad.mit.edu	37	3	186449367	186449367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:186449367G>A	uc011bsa.1	+	6	918	c.706G>A	c.(706-708)GAT>AAT	p.D236N	KNG1_uc003fqr.2_Missense_Mutation_p.D236N	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	236	Cystatin 2.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	TGCATACATCGATATTCAGCT	0.368													36	39					0	0	0.019004	0	0
TP63	8626	broad.mit.edu	37	3	189455563	189455563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:189455563G>A	uc003fry.2	+	2	186	c.97G>A	c.(97-99)GAA>AAA	p.E33K	TP63_uc003frx.2_Missense_Mutation_p.E33K|TP63_uc003frz.2_Missense_Mutation_p.E33K|TP63_uc010hzc.1_Missense_Mutation_p.E33K	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	33	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CTCTTGGAAAGAAAGTTATTA	0.358									Hay-Wells_syndrome	HNSCC(45;0.13)			58	72					0	0	0.014410	0	0
TP63	8626	broad.mit.edu	37	3	189582089	189582089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:189582089G>A	uc003fry.2	+	5	737	c.648G>A	c.(646-648)ATG>ATA	p.M216I	TP63_uc003frx.2_Missense_Mutation_p.M216I|TP63_uc003frz.2_Missense_Mutation_p.M216I|TP63_uc010hzc.1_Missense_Mutation_p.M216I|TP63_uc003fsa.2_Missense_Mutation_p.M122I|TP63_uc003fsb.2_Missense_Mutation_p.M122I|TP63_uc003fsc.2_Missense_Mutation_p.M122I|TP63_uc003fsd.2_Missense_Mutation_p.M122I|TP63_uc010hzd.1_Missense_Mutation_p.M37I|TP63_uc003fse.1_Missense_Mutation_p.M97I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	216					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TCAAGGTGATGACCCCACCTC	0.527									Hay-Wells_syndrome	HNSCC(45;0.13)			37	163					0	0	0.015359	0	0
TP63	8626	broad.mit.edu	37	3	189608668	189608668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:189608668G>A	uc003fry.2	+	13	1832	c.1743G>A	c.(1741-1743)ATG>ATA	p.M581I	TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Missense_Mutation_p.M487I|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Missense_Mutation_p.M402I	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	581	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ATTACTCCATGGATGTAAGTA	0.408									Hay-Wells_syndrome	HNSCC(45;0.13)			20	60					0	0	0.008871	0	0
TP63	8626	broad.mit.edu	37	3	189612176	189612176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:189612176G>A	uc003fry.2	+	14	2017	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.R549Q|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.R464Q	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	643	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GATGCTGTGCGATTCACCCTC	0.552									Hay-Wells_syndrome	HNSCC(45;0.13)			40	80					0	0	0.010771	0	0
CLDN16	10686	broad.mit.edu	37	3	190106125	190106125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:190106125G>A	uc003fsi.2	+	1	285	c.217G>A	c.(217-219)GAT>AAT	p.D73N	CLDN16_uc010hze.2_Missense_Mutation_p.D73N	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	73	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		CACAATGAGGGATCTTCTTCA	0.517													66	94					0	0	0.014410	0	0
ATP13A5	344905	broad.mit.edu	37	3	193032886	193032886	+	Splice_Site	SNP	C	T	T	rs138259240		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:193032886C>T	uc011bsq.1	-	18	2034	c.2034_splice	c.e18-1	p.R678_splice		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5						ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CACTTTTTCTCTTTGTATTCA	0.313													46	65					0	0	0.014410	0	0
ATP13A5	344905	broad.mit.edu	37	3	193040314	193040314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:193040314G>A	uc011bsq.1	-	15	1724	c.1724C>T	c.(1723-1725)TCA>TTA	p.S575L		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	575					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TATGATGTTTGAAACTGACGT	0.323													79	106					0	0	0.014410	0	0
TMEM44	93109	broad.mit.edu	37	3	194337856	194337856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:194337856G>A	uc010hzn.2	-	7	1065	c.896C>T	c.(895-897)TCC>TTC	p.S299F	TMEM44_uc010hzm.2_5'Flank|TMEM44_uc003fuc.2_5'UTR|TMEM44_uc003fue.2_Missense_Mutation_p.S252F|TMEM44_uc003fud.2_Missense_Mutation_p.S252F|TMEM44_uc003fuf.2_Missense_Mutation_p.S252F|TMEM44_uc011bsv.1_Missense_Mutation_p.S252F|TMEM44_uc003fuh.1_Intron	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	299	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		ACGGCCGAGGGAGGTCAGGAA	0.682													5	7					0	0	0.014758	0	0
MUC4	4585	broad.mit.edu	37	3	195517402	195517402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:195517402G>A	uc011bto.1	-	2	1509	c.1049C>T	c.(1048-1050)TCA>TTA	p.S350L	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.S232L	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	355					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TAAAACAGTTGATGTTGTAAC	0.478													103	409					0	0	0.014410	0	0
PAK2	5062	broad.mit.edu	37	3	196555209	196555209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr3:196555209C>T	uc003fwy.3	+	15	1830	c.1508C>T	c.(1507-1509)GCC>GTC	p.A503V		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	503					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		CTGAAACTGGCCAAACCGTTA	0.398													70	384					0	0	0.014410	0	0
GAK	2580	broad.mit.edu	37	4	853510	853511	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:853510_853511CC>TT	uc003gbm.3	-	24	3366	c.3167_splice	c.e24-1	p.G1056_splice	GAK_uc003gbn.3_Splice_Site_p.G977_splice|GAK_uc010ibi.2_Splice_Site_p.G237_splice|GAK_uc010ibj.2_Splice_Site|GAK_uc003gbl.3_Splice_Site_p.G909_splice	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase						cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GAAGAGGGGGCCTGGAGAAGGG	0.604													20	110					0	0	0.004672	0	0
DGKQ	1609	broad.mit.edu	37	4	961348	961348	+	Missense_Mutation	SNP	C	T	T	rs146401678		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:961348C>T	uc003gbw.2	-	8	1050	c.976G>A	c.(976-978)GAG>AAG	p.E326K	DGKQ_uc010ibn.2_Missense_Mutation_p.E326K	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	326					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			AGCACCTCCTCGGCACCGGCC	0.682													33	63					0	0	0.021022	0	0
TACC3	10460	broad.mit.edu	37	4	1742580	1742580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:1742580C>T	uc003gdo.2	+	13	2198	c.2090C>T	c.(2089-2091)TCC>TTC	p.S697F	TACC3_uc003gdp.2_Missense_Mutation_p.S337F|TACC3_uc010ica.2_Missense_Mutation_p.S118F	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	697	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			AAGGAACTTTCCAAAGCTGAA	0.453													33	122					0	0	0.013726	0	0
FGFR3	2261	broad.mit.edu	37	4	1801056	1801056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:1801056C>T	uc003gdr.3	+	3	441	c.185C>T	c.(184-186)CCC>CTC	p.P62L	FGFR3_uc003gdu.2_Missense_Mutation_p.P62L|FGFR3_uc003gds.3_Missense_Mutation_p.P62L|FGFR3_uc003gdq.3_Missense_Mutation_p.P62L|FGFR3_uc010icb.1_5'Flank|FGFR3_uc003gdt.1_5'Flank	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	62	Ig-like C2-type 1.|Extracellular (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	CTGAGCTGTCCCCCGCCCGGG	0.697		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				30	120					0	0	0.009535	0	0
WHSC1	7468	broad.mit.edu	37	4	1920067	1920067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:1920067C>T	uc003gdz.3	+	5	1303	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F	WHSC1_uc003geb.3_Missense_Mutation_p.S376F|WHSC1_uc003gec.3_Missense_Mutation_p.S376F|WHSC1_uc003ged.3_Missense_Mutation_p.S376F|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Missense_Mutation_p.S376F|WHSC1_uc003gdy.1_Missense_Mutation_p.S376F|WHSC1_uc010icd.1_Missense_Mutation_p.S376F|WHSC1_uc003gea.1_Missense_Mutation_p.S376F|WHSC1_uc010ice.1_Missense_Mutation_p.S376F|WHSC1_uc003geh.1_Missense_Mutation_p.S376F	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	376					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		ATGGCAGAATCCTCAGGAGTC	0.512			T	IGH@	MM								26	81					0	0	0.027356	0	0
GRK4	2868	broad.mit.edu	37	4	2994003	2994003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:2994003G>A	uc003ggn.1	+	4	778	c.323G>A	c.(322-324)AGA>AAA	p.R108K	GRK4_uc003ggo.1_Missense_Mutation_p.R108K|GRK4_uc003ggp.1_Missense_Mutation_p.R76K|GRK4_uc003ggq.1_Missense_Mutation_p.R76K	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	108	RGS.|N-terminal.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ATCTTAGATAGATTCTTCAAT	0.328													8	51					0	0	0.008291	0	0
HTT	3064	broad.mit.edu	37	4	3201562	3201562	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:3201562C>T	uc011bvq.1	+	42	5623	c.5478C>T	c.(5476-5478)TCC>TCT	p.S1826S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1824					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGGCTCGTTCCATGATCACCA	0.597													33	69					0	0	0.013726	0	0
HTT	3064	broad.mit.edu	37	4	3240606	3240606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:3240606C>T	uc011bvq.1	+	67	9267	c.9122C>T	c.(9121-9123)TCC>TTC	p.S3041F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	3039					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTCATGCTGTCCCTCTCCAAC	0.652													8	27					0	0	0.004482	0	0
CRMP1	1400	broad.mit.edu	37	4	5851179	5851179	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:5851179G>A	uc003gip.2	-	7	662	c.561C>T	c.(559-561)TTC>TTT	p.F187F	CRMP1_uc003gin.1_Silent_p.F99F|CRMP1_uc003giq.2_Silent_p.F187F|CRMP1_uc003gir.2_Silent_p.F182F|CRMP1_uc003gis.2_Silent_p.F301F	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	187					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		GGCCCTTAAGGAAGGTAAAGG	0.433													35	54					0	0	0.025465	0	0
C4orf50	389197	broad.mit.edu	37	4	5975479	5975479	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:5975479C>T	uc003git.1	-	4	405	c.315G>A	c.(313-315)GGG>GGA	p.G105G		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	105										pancreas(2)|breast(1)	3						GCAGGAGGTTCCCCAGCCCAT	0.627													45	91					0	0	0.011902	0	0
GPR78	27201	broad.mit.edu	37	4	8582718	8582718	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:8582718C>T	uc003glk.2	+	1	428	c.9C>T	c.(7-9)CCC>CCT	p.P3P	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	3	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						CCATGGGCCCCGGCGAGGCGC	0.682													9	20					0	0	0.006214	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13339612	13339612	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:13339612G>A	uc003gms.2	+	1		c.4576G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						AGCAAGTATGGAAGCGGGACT	0.483													8	21					0	0	0.003080	0	0
CC2D2A	57545	broad.mit.edu	37	4	15529154	15529154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:15529154G>A	uc010idv.2	+	13	1479	c.1234G>A	c.(1234-1236)GGG>AGG	p.G412R	CC2D2A_uc003gnx.2_Missense_Mutation_p.G363R|CC2D2A_uc003gnv.2_Missense_Mutation_p.G412R	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	412					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						TGATATTTCAGGGTTAATCTT	0.458													14	22					0	0	0.024245	0	0
PROM1	8842	broad.mit.edu	37	4	16000066	16000066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:16000066G>A	uc003goo.2	-	14	1836	c.1624C>T	c.(1624-1626)CTC>TTC	p.L542F	PROM1_uc003gor.2_Missense_Mutation_p.L542F|PROM1_uc003gos.2_Missense_Mutation_p.L533F|PROM1_uc003got.2_Missense_Mutation_p.L542F|PROM1_uc003gou.2_Missense_Mutation_p.L533F|PROM1_uc003gop.2_Missense_Mutation_p.L533F|PROM1_uc003goq.3_Missense_Mutation_p.L533F	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	542	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TTCCCAGAGAGATAGTATTCC	0.308													6	39					0	0	0.021553	0	0
PROM1	8842	broad.mit.edu	37	4	16037363	16037363	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:16037363G>C	uc003goo.2	-	3	510	c.298C>G	c.(298-300)CTA>GTA	p.L100V	PROM1_uc003gor.2_Missense_Mutation_p.L100V|PROM1_uc003gos.2_Intron|PROM1_uc003got.2_Missense_Mutation_p.L100V|PROM1_uc003gou.2_Intron|PROM1_uc003gop.2_Intron|PROM1_uc003goq.3_Intron|PROM1_uc010iec.1_Intron	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	100	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TTTACCTTTAGACCTAAGATT	0.403													29	114					0	0	0.015359	0	0
LDB2	9079	broad.mit.edu	37	4	16597450	16597450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:16597450C>T	uc003goz.2	-	3	600	c.284G>A	c.(283-285)GGA>GAA	p.G95E	LDB2_uc003gpa.2_Missense_Mutation_p.G95E|LDB2_uc003gpb.2_Missense_Mutation_p.G95E|LDB2_uc011bxh.1_Missense_Mutation_p.G95E|LDB2_uc010iee.2_Missense_Mutation_p.G95E|LDB2_uc003goy.2_5'UTR|LDB2_uc011bxi.1_5'UTR	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	95							LIM domain binding|transcription cofactor activity				0						GGTCACCCCTCCTTCAAACAC	0.493													5	22					0	0	0.021553	0	0
SLIT2	9353	broad.mit.edu	37	4	20569199	20569199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:20569199G>A	uc003gpr.1	+	28	3113	c.2909G>A	c.(2908-2910)GGA>GAA	p.G970E	SLIT2_uc003gps.1_Missense_Mutation_p.G962E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	970	EGF-like 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AAACATGGAGGAACTTGCCAC	0.443													6	28					0	0	0.001984	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815818	23815818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:23815818C>T	uc003gqs.2	-	8	1408	c.1288G>A	c.(1288-1290)GAC>AAC	p.D430N	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	430					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TAGCACTGGTCTGAATCTGTG	0.468													9	47					0	0	0.004482	0	0
LGI2	55203	broad.mit.edu	37	4	25005844	25005844	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:25005844G>A	uc003grf.2	-	8	966	c.867C>T	c.(865-867)GTC>GTT	p.V289V		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	289	EAR 2.					extracellular region					0		Breast(46;0.173)				CCACCACAAAGACCTGATCAT	0.463													33	165					0	0	0.017118	0	0
ANAPC4	29945	broad.mit.edu	37	4	25419792	25419792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:25419792C>T	uc003gro.2	+	29	2344	c.2215C>T	c.(2215-2217)CGT>TGT	p.R739C	ANAPC4_uc003grp.2_Missense_Mutation_p.R625C|ANAPC4_uc003grq.2_Missense_Mutation_p.R192C	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	739					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				CTCAAATCTTCGTCATGTGAG	0.328													30	137					0	0	0.008361	0	0
TBC1D19	55296	broad.mit.edu	37	4	26744166	26744166	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:26744166C>G	uc003gsf.3	+	18	1534	c.1264C>G	c.(1264-1266)CTT>GTT	p.L422V	TBC1D19_uc010iew.2_Missense_Mutation_p.L422V|TBC1D19_uc011bxu.1_Missense_Mutation_p.L357V	NM_018317	NP_060787	Q8N5T2	TBC19_HUMAN	TBC1 domain family, member 19	422	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			breast(1)	1		Breast(46;0.0503)				TGAAACTCTTCTTCAAACTTA	0.328													22	168					0	0	0.027356	0	0
ARAP2	116984	broad.mit.edu	37	4	36168569	36168570	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:36168569_36168570GG>AA	uc003gsq.1	-	10	2295_2296	c.1957_1958CC>TT	c.(1957-1959)CCC>TTC	p.P653F	ARAP2_uc003gsr.1_Missense_Mutation_p.P653F	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	653	PH 2.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACTCCTGTAGGGAGTGATTATT	0.361													8	43					0	0	0.004672	0	0
NSUN7	79730	broad.mit.edu	37	4	40776902	40776902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:40776902C>T	uc003gvj.3	+	6	1255	c.760C>T	c.(760-762)CCA>TCA	p.P254S	NSUN7_uc003gvh.2_Missense_Mutation_p.P254S|NSUN7_uc003gvi.3_Missense_Mutation_p.P254S	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						CTTAATTTTTCCATCTCATCT	0.264													23	49					0	0	0.012319	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648700	41648700	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:41648700C>T	uc003gvu.3	+	12	1509	c.1455C>T	c.(1453-1455)CCC>CCT	p.P485P	LIMCH1_uc003gvv.3_Silent_p.P485P|LIMCH1_uc003gvw.3_Silent_p.P485P|LIMCH1_uc003gvx.3_Silent_p.P473P|LIMCH1_uc003gwe.3_Silent_p.P485P|LIMCH1_uc003gvy.3_Silent_p.P314P|LIMCH1_uc003gwa.3_Silent_p.P326P|LIMCH1_uc003gvz.3_Silent_p.P870P|LIMCH1_uc011byu.1_Silent_p.P319P|LIMCH1_uc003gwc.3_Silent_p.P331P|LIMCH1_uc003gwd.3_Silent_p.P319P|LIMCH1_uc011byv.1_Silent_p.P236P	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	485					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						ACCCCAATCCCATGAAATACC	0.488													65	431					0	0	0.014410	0	0
LIMCH1	22998	broad.mit.edu	37	4	41684366	41684366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:41684366G>A	uc003gvu.3	+	21	2636	c.2582G>A	c.(2581-2583)GGA>GAA	p.G861E	LIMCH1_uc003gvv.3_Missense_Mutation_p.G861E|LIMCH1_uc003gvw.3_Missense_Mutation_p.G860E|LIMCH1_uc003gvx.3_Missense_Mutation_p.G873E|LIMCH1_uc003gwe.3_Missense_Mutation_p.G784E|LIMCH1_uc003gvy.3_Missense_Mutation_p.G689E|LIMCH1_uc003gwa.3_Missense_Mutation_p.G701E|LIMCH1_uc003gvz.3_Missense_Mutation_p.G1245E|LIMCH1_uc011byu.1_Missense_Mutation_p.G694E|LIMCH1_uc003gwc.3_Missense_Mutation_p.G706E|LIMCH1_uc003gwd.3_Missense_Mutation_p.G694E|LIMCH1_uc011byv.1_Missense_Mutation_p.G611E|LIMCH1_uc011byw.1_Missense_Mutation_p.G160E	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	861					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						ATAGACCTGGGAAACTGTCAA	0.363													7	20					0	0	0.001984	0	0
PHOX2B	8929	broad.mit.edu	37	4	41748160	41748160	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:41748160G>A	uc003gwf.3	-	3	969	c.609C>T	c.(607-609)AAC>AAT	p.N203N		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	203					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						TGGGGGTGGGGTTGGGATTGG	0.448			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				20	77					0	0	0.027356	0	0
SLC30A9	10463	broad.mit.edu	37	4	42065032	42065032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:42065032C>T	uc003gwl.2	+	11	1072	c.926C>T	c.(925-927)TCT>TTT	p.S309F	SLC30A9_uc011byx.1_Missense_Mutation_p.S69F	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	309					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						CGCTATATTTCTTCGCTAATT	0.348													26	131					0	0	0.024334	0	0
GABRA2	2555	broad.mit.edu	37	4	46252529	46252529	+	Silent	SNP	G	A	A	rs143219761		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:46252529G>A	uc003gxc.3	-	9	1825	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	GABRA2_uc010igc.2_Silent_p.L384L|GABRA2_uc011bzc.1_Silent_p.L389L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	384	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGATGGTGGAGAGAACTGGAT	0.423													28	60					0	0	0.007291	0	0
CORIN	10699	broad.mit.edu	37	4	47625936	47625936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:47625936G>A	uc003gxm.2	-	18	2438	c.2345C>T	c.(2344-2346)TCT>TTT	p.S782F	CORIN_uc011bzf.1_Missense_Mutation_p.S643F|CORIN_uc011bzg.1_Missense_Mutation_p.S715F	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	782	Extracellular (Potential).|SRCR.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ACACAGAAGAGAAATTTTACT	0.368													23	49					0	0	0.024334	0	0
FRYL	285527	broad.mit.edu	37	4	48584556	48584556	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:48584556C>T	uc003gyh.1	-	20	2549	c.1944G>A	c.(1942-1944)TGG>TGA	p.W648*	FRYL_uc003gyk.2_Nonsense_Mutation_p.W648*	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	648					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CTGCTTGTTTCCACTGATTTA	0.358													8	35					0	0	0.003080	0	0
FRYL	285527	broad.mit.edu	37	4	48604129	48604129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:48604129G>A	uc003gyh.1	-	13	1548	c.943C>T	c.(943-945)CCA>TCA	p.P315S	FRYL_uc003gyk.2_Missense_Mutation_p.P315S	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	315					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GTAATTAGTGGATATAAAGCC	0.303													24	34					0	0	0.021523	0	0
LRRC66	339977	broad.mit.edu	37	4	52860987	52860987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:52860987G>A	uc003gzi.2	-	4	2214	c.2201C>T	c.(2200-2202)TCC>TTC	p.S734F		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	734						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GTCCTGCAGGGACTCCTCATC	0.507													22	100					0	0	0.012319	0	0
LRRC66	339977	broad.mit.edu	37	4	52862276	52862276	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:52862276G>A	uc003gzi.2	-	4	925	c.912C>T	c.(910-912)CGC>CGT	p.R304R		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	304						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGGAGGAAGGCGGGTTTCCC	0.527													32	60					0	0	0.021022	0	0
GSX2	170825	broad.mit.edu	37	4	54968083	54968083	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:54968083C>T	uc010igp.1	+	2	1173	c.909C>T	c.(907-909)CCC>CCT	p.P303P	PDGFRA_uc003haa.2_Intron	NM_133267	NP_573574	Q9BZM3	GSX2_HUMAN	GS homeobox 2	303						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(7;0.00671)|Lung NSC(11;0.0154)|all_neural(26;0.0209)|Glioma(25;0.08)|all_epithelial(27;0.147)		LUSC - Lung squamous cell carcinoma(32;0.00216)			AGATTTCCCCCTTATGAGGGA	0.657													11	20					0	0	0.008291	0	0
PDGFRA	5156	broad.mit.edu	37	4	55156545	55156545	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:55156545G>A	uc003han.3	+	22	3277	c.2946G>A	c.(2944-2946)GTG>GTA	p.V982V	PDGFRA_uc003haa.2_Silent_p.V742V	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	982	Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GCATGCGTGTGGACTCAGACA	0.453			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			28	73					0	0	0.027356	0	0
NMU	10874	broad.mit.edu	37	4	56471445	56471445	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:56471445C>T	uc003hbc.2	-	7	538	c.432G>A	c.(430-432)GTG>GTA	p.V144V	NMU_uc003hbd.1_Intron|NMU_uc010igv.1_RNA|NMU_uc010igw.1_Silent_p.V59V|NMU_uc010igx.1_Intron	NM_006681	NP_006672	P48645	NMU_HUMAN	neuromedin U precursor	144					neuropeptide signaling pathway	extracellular region					0	Lung NSC(11;0.00256)|all_epithelial(27;0.075)|Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.103)	LUSC - Lung squamous cell carcinoma(4;6.72e-08)|Lung(4;6.22e-07)|Epithelial(7;0.00559)	LUSC - Lung squamous cell carcinoma(721;0.0115)		TACATACGTCCACTCTGAATC	0.483													13	101					0	0	0.004990	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69101771	69101771	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69101771T>C	uc003hdw.3	-	4	393	c.257A>G	c.(256-258)CAA>CGA	p.Q86R		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	86	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ACTGGAATTTTGAAATGCATT	0.249													7	27					0	0	0.001984	0	0
YTHDC1	91746	broad.mit.edu	37	4	69182129	69182130	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69182129_69182130GG>AA	uc003hdx.2	-	16	2214_2215	c.1861_1862CC>TT	c.(1861-1863)CCT>TTT	p.P621F	YTHDC1_uc003hdy.2_Missense_Mutation_p.P603F	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	621	Pro-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						CTGATAGTAAGGATGGTGTGGA	0.441													40	105					0	0	0.004672	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681805	69681805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69681805G>A	uc003hee.2	+	1	93	c.68G>A	c.(67-69)GGA>GAA	p.G23E	UGT2B10_uc011cam.1_Missense_Mutation_p.G23E	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	23					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GGGAGTTGTGGAAAGGTGCTG	0.438													17	68					0	0	0.006122	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683824	69683824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69683824C>T	uc003hee.2	+	2	821	c.796C>T	c.(796-798)CCT>TCT	p.P266S	UGT2B10_uc011cam.1_Missense_Mutation_p.P182S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	266					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TTTTAAATTTCCTCATCCATT	0.383													27	66					0	0	0.027356	0	0
UGT2A3	79799	broad.mit.edu	37	4	69816878	69816878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69816878C>T	uc003hef.2	-	1	632	c.601G>A	c.(601-603)GAC>AAC	p.D201N	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	201	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTCATTCTGTCTGTTAGTCCT	0.408													4	15					0	0	0.014758	0	0
UGT2B10	7365	broad.mit.edu	37	4	69879748	69879748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:69879748G>A	uc011cao.1	-	6	1017	c.881C>T	c.(880-882)CCA>CTA	p.P294L	UGT2B10_uc011can.1_Missense_Mutation_p.P210L			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	331					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TACCTTTTGTGGGATCTTGGC	0.408													9	76					0	0	0.008291	0	0
UGT2B11	10720	broad.mit.edu	37	4	70078291	70078291	+	Silent	SNP	C	T	T	rs145988491		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:70078291C>T	uc003heh.2	-	2	879	c.870G>A	c.(868-870)AAG>AAA	p.K290K	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	290					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						GTATGTTTACCTTAGGTAGGG	0.358													7	68					0	0	0.001984	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146563	70146563	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:70146563C>T	uc003hej.2	+	1	347	c.345C>T	c.(343-345)ATC>ATT	p.I115I	UGT2B28_uc010ihr.2_Silent_p.I115I	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	115					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	AACAAGAAATCCTGTGGGAAT	0.294													5	55					0	0	0.014758	0	0
UGT2A1	10941	broad.mit.edu	37	4	70455308	70455308	+	Missense_Mutation	SNP	C	T	T	rs149562826		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:70455308C>T	uc003hem.3	-	6	1429	c.1366G>A	c.(1366-1368)GAT>AAT	p.D456N	UGT2A1_uc011caq.1_Missense_Mutation_p.D622N|UGT2A1_uc010ihu.2_Missense_Mutation_p.D456N|UGT2A1_uc010iht.2_Missense_Mutation_p.D412N|UGT2A1_uc010ihs.2_Missense_Mutation_p.D457N	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	456	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						ACTGCTCGATCCAGGGGCTTT	0.438													42	87					0	0	0.014410	0	0
C4orf40	401137	broad.mit.edu	37	4	71024317	71024317	+	Silent	SNP	G	A	A	rs148239542		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:71024317G>A	uc003hfa.3	+	4	421	c.348G>A	c.(346-348)AGG>AGA	p.R116R	C4orf40_uc003hfb.3_Silent_p.R116R	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	116						extracellular region					0						CTCCTTCAAGGTTTTTTTCAG	0.547													119	230					0	0	0.014410	0	0
PROL1	58503	broad.mit.edu	37	4	71275418	71275418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:71275418C>T	uc003hfi.2	+	3	547	c.373C>T	c.(373-375)CCT>TCT	p.P125S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	125	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACCCCCATTTCCTCCTATTCC	0.413													52	150					0	0	0.014410	0	0
ENAM	10117	broad.mit.edu	37	4	71500027	71500027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:71500027G>A	uc011caw.1	+	6	494	c.213G>A	c.(211-213)ATG>ATA	p.M71I		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	71					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCTTTCAGATGGCACACCTGG	0.493													25	163					0	0	0.027356	0	0
ENAM	10117	broad.mit.edu	37	4	71509961	71509961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:71509961G>A	uc011caw.1	+	9	3099	c.2818G>A	c.(2818-2820)GAA>AAA	p.E940K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	940					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGAGAAGAGGGAAAGCCAAAA	0.458													27	60					0	0	0.027356	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013193	73013193	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:73013193C>T	uc003hgg.2	+	4	1331	c.1233C>T	c.(1231-1233)ATC>ATT	p.I411I	NPFFR2_uc010iig.1_Silent_p.I193I|NPFFR2_uc003hgi.2_Silent_p.I312I|NPFFR2_uc003hgh.2_Silent_p.I309I|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	411	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			AACTGCAGATCATCAACATCT	0.473													11	73					0	0	0.013537	0	0
AFP	174	broad.mit.edu	37	4	74318255	74318255	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:74318255C>T	uc003hgz.1	+	12	1613	c.1566C>T	c.(1564-1566)GTC>GTT	p.V522V	AFP_uc003hha.1_Silent_p.V522V|AFP_uc011cbg.1_Silent_p.V296V	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	522	Albumin 3.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AAACATATGTCCCTCCTGCAT	0.468									Alpha-Fetoprotein_Hereditary_Persistence_of				8	57					0	0	0.004482	0	0
AFM	173	broad.mit.edu	37	4	74347571	74347571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:74347571C>T	uc003hhb.2	+	1	110	c.79C>T	c.(79-81)CGG>TGG	p.R27W		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	27	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CACACAACCTCGGGATATAGG	0.294													27	51					0	0	0.009535	0	0
RASSF6	166824	broad.mit.edu	37	4	74453570	74453570	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:74453570C>T	uc003hhd.1	-	5	588	c.465G>A	c.(463-465)AGG>AGA	p.R155R	RASSF6_uc003hhc.1_Silent_p.R123R|RASSF6_uc010iik.1_Silent_p.R123R|RASSF6_uc010iil.1_Silent_p.R111R	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	155					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			CCTGGGAATTCCTTTTTTCAG	0.368													13	29					0	0	0.024245	0	0
PPBP	5473	broad.mit.edu	37	4	74853706	74853706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:74853706C>T	uc003hhj.2	-	1	195	c.115G>A	c.(115-117)GGA>AGA	p.G39R		NM_002704	NP_002695	P02775	CXCL7_HUMAN	pro-platelet basic protein precursor	39					chemotaxis|defense response to bacterium|immune response|platelet activation|platelet degranulation|positive regulation of cell division	extracellular space|platelet alpha granule lumen	chemokine activity|glucose transmembrane transporter activity|growth factor activity	p.G39E(1)		ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(15;0.00136)		all cancers(17;0.00273)|Lung(101;0.196)			TTAGTTTGTCCTTTGGTGGAG	0.522													37	60					0	0	0.023175	0	0
CCDC158	339965	broad.mit.edu	37	4	77300459	77300459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:77300459C>T	uc003hkb.3	-	8	1166	c.1013G>A	c.(1012-1014)AGG>AAG	p.R338K	CCDC158_uc003hkd.2_Missense_Mutation_p.R338K	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	338	Potential.							p.R338R(1)		skin(3)|ovary(2)|pancreas(1)	6						TTCATACATCCTTTTGGCTTC	0.353													13	72					0	0	0.016723	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660215	77660215	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:77660215G>T	uc011cbx.1	+	5	1842	c.889G>T	c.(889-891)GAA>TAA	p.E297*	SHROOM3_uc011cbz.1_Nonsense_Mutation_p.E121*|SHROOM3_uc003hkf.1_Nonsense_Mutation_p.E172*|SHROOM3_uc003hkg.2_Nonsense_Mutation_p.E75*	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	297					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TGGCCTCCTCGAAGGGATGAG	0.557													17	92					3.32936e-07	3.37498e-07	0.006122	1	0
CXCL13	10563	broad.mit.edu	37	4	78528937	78528937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:78528937G>A	uc003hkr.2	+	3	223	c.145G>A	c.(145-147)GAT>AAT	p.D49N		NM_006419	NP_006410	O43927	CXL13_HUMAN	chemokine (C-X-C motif) ligand 13 (B-cell	49					activation of Rap GTPase activity|B cell chemotaxis|cell-cell signaling|chronic inflammatory response|defense response to bacterium|elevation of cytosolic calcium ion concentration|endothelial cell chemotaxis to fibroblast growth factor|germinal center formation|lymphocyte chemotaxis across high endothelial venule|negative regulation of apoptosis|positive regulation of cell-cell adhesion mediated by integrin|positive regulation of integrin activation|positive regulation of T cell chemotaxis|regulation of angiogenesis|regulation of humoral immune response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|CXCR3 chemokine receptor binding|CXCR5 chemokine receptor binding|fibroblast growth factor 2 binding|heparin binding|protein heterodimerization activity|receptor agonist activity				0						ACGCTTCATTGATCGAATTCA	0.388													34	81					0	0	0.015359	0	0
FRAS1	80144	broad.mit.edu	37	4	79387520	79387520	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:79387520G>A	uc003hlb.2	+	50	7628	c.7188G>A	c.(7186-7188)AAG>AAA	p.K2396K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2395	CSPG 11.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACTCCCTCAAGGACCGGTTCA	0.532													19	42					0	0	0.007413	0	0
FRAS1	80144	broad.mit.edu	37	4	79437009	79437009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:79437009G>A	uc003hlb.2	+	66	10671	c.10231G>A	c.(10231-10233)GAT>AAT	p.D3411N		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3406	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCCTGGCTACGATCGCCCCTT	0.552													6	52					0	0	0.003080	0	0
GK2	2712	broad.mit.edu	37	4	80328367	80328367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:80328367G>A	uc003hlu.2	-	1	1006	c.988C>T	c.(988-990)CGT>TGT	p.R330C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	330					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CTTAGCCAACGAATAACAGCA	0.428													40	120					0	0	0.008740	0	0
HPSE	10855	broad.mit.edu	37	4	84234441	84234441	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:84234441C>T	uc003hoj.3	-	4	599	c.500_splice	c.e4-1	p.R167_splice	HPSE_uc010ika.2_Intron|HPSE_uc011ccq.1_Splice_Site|HPSE_uc011ccr.1_Splice_Site|HPSE_uc011ccs.1_Intron|HPSE_uc011cct.1_Splice_Site_p.R167_splice|HPSE_uc003hok.3_Splice_Site_p.R167_splice	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor						carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	ACAGAGCTTCCTAAAAGAAAA	0.378													25	46					0	0	0.024334	0	0
CDS1	1040	broad.mit.edu	37	4	85564253	85564253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:85564253G>A	uc011ccv.1	+	11	1607	c.1109G>A	c.(1108-1110)GGA>GAA	p.G370E	CDS1_uc010ike.1_Intron	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	370	Helical; (Potential).				signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GGCCCATTTGGAGGCTTCTTT	0.388													44	103					0	0	0.013114	0	0
WDFY3	23001	broad.mit.edu	37	4	85645656	85645656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:85645656G>A	uc003hpd.2	-	46	7772	c.7364C>T	c.(7363-7365)GCC>GTC	p.A2455V	WDFY3_uc003hpe.1_Missense_Mutation_p.A66V	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2455						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CTCCACAATGGCGTCTTGGAC	0.463													32	88					0	0	0.017118	0	0
DMP1	1758	broad.mit.edu	37	4	88583217	88583217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:88583217G>A	uc003hqv.2	+	6	391	c.287G>A	c.(286-288)GGA>GAA	p.G96E	DMP1_uc003hqw.2_Missense_Mutation_p.G80E	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	96					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		AGGAGCACAGGAAAAGGAGGA	0.502													11	72					0	0	0.008291	0	0
MEPE	56955	broad.mit.edu	37	4	88766263	88766263	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:88766263G>A	uc003hqy.2	+	4	282	c.243G>A	c.(241-243)AAG>AAA	p.K81K	MEPE_uc010ikn.2_5'UTR	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	81					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		GTGAGAATAAGGGAAGTAGTA	0.338													10	35					0	0	0.008291	0	0
MEPE	56955	broad.mit.edu	37	4	88766951	88766951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:88766951G>A	uc003hqy.2	+	4	970	c.931G>A	c.(931-933)GAA>AAA	p.E311K	MEPE_uc010ikn.2_Missense_Mutation_p.E198K	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	311					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AGAGAGAGAAGAAAATGGTGG	0.448													20	47					0	0	0.010504	0	0
HERC5	51191	broad.mit.edu	37	4	89384700	89384700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:89384700C>T	uc003hrt.2	+	5	859	c.706C>T	c.(706-708)CTT>TTT	p.L236F		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	236	RCC1 3.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		TGATCCATCCCTTATTGAAGG	0.438													25	117					0	0	0.018920	0	0
C4orf37	285555	broad.mit.edu	37	4	98480257	98480257	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:98480257C>T	uc003htt.1	-	11	1422	c.1332G>A	c.(1330-1332)GAG>GAA	p.E444E		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	444											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		CTTTCTTTTTCTCCTGGGATA	0.269													36	71					0	0	0.023175	0	0
ADH5	128	broad.mit.edu	37	4	100006318	100006318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:100006318G>A	uc003hui.2	-	2	142	c.62C>T	c.(61-63)TCC>TTC	p.S21F	ADH5_uc003huk.1_Missense_Mutation_p.S21F|ADH5_uc003huj.2_5'UTR	NM_000671	NP_000662	P11766	ADHX_HUMAN	class III alcohol dehydrogenase, chi subunit	21					ethanol oxidation|response to redox state		alcohol dehydrogenase (NAD) activity|electron carrier activity|fatty acid binding|formaldehyde dehydrogenase activity|S-(hydroxymethyl)glutathione dehydrogenase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.5e-07)	NADH(DB00157)	CTCCTCTATGGAGAGAGGCTT	0.453													7	12					0	0	0.004482	0	0
ADH6	130	broad.mit.edu	37	4	100125387	100125387	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:100125387G>A	uc003huo.2	-	9	1211	c.1117C>T	c.(1117-1119)CTG>TTG	p.L373L	uc003hum.1_Intron|ADH6_uc011cef.1_Silent_p.L164L	NM_001102470	NP_001095940	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 1	Error:Variant_position_missing_in_P28332_after_alignment					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TAAAGTAACAGGATACAGCGG	0.318													8	42					0	0	0.010729	0	0
ADH6	130	broad.mit.edu	37	4	100128614	100128614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:100128614G>A	uc003hup.3	-	7	1047	c.953C>T	c.(952-954)TCT>TTT	p.S318F	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.S318F|ADH6_uc011cef.1_Missense_Mutation_p.S109F|ADH6_uc010ile.2_Intron	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	318					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TCCAAAAACAGAACCCTTCAA	0.463													12	64					0	0	0.020292	0	0
ADH7	131	broad.mit.edu	37	4	100341927	100341927	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:100341927G>A	uc003huv.1	-	6	723	c.624C>T	c.(622-624)GTC>GTT	p.V208V		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	208					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	GGCCAAAGACGACGCAAGTGG	0.468													10	36					0	0	0.006214	0	0
EMCN	51705	broad.mit.edu	37	4	101386648	101386648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:101386648G>A	uc003hvr.2	-	4	487	c.308C>T	c.(307-309)TCA>TTA	p.S103L	EMCN_uc011cel.1_Missense_Mutation_p.S103L|EMCN_uc011cem.1_Missense_Mutation_p.S103L	NM_016242	NP_057326	Q9ULC0	MUCEN_HUMAN	endomucin isoform 1	103	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(123;2.49e-08)		TGTTACGTTTGAAATGATGGA	0.363													20	56					0	0	0.010504	0	0
TACR3	6870	broad.mit.edu	37	4	104512783	104512783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:104512783G>A	uc003hxe.1	-	4	1089	c.946C>T	c.(946-948)CAT>TAT	p.H316Y		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	316	Helical; Name=6; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AAGTAAATATGATAGGGCAGC	0.353													4	33					0	0	0.009096	0	0
NPNT	255743	broad.mit.edu	37	4	106861297	106861298	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:106861297_106861298GG>AA	uc003hya.2	+	6	776_777	c.571_572GG>AA	c.(571-573)GGG>AAG	p.G191K	NPNT_uc011cfc.1_Missense_Mutation_p.G208K|NPNT_uc011cfd.1_Missense_Mutation_p.G221K|NPNT_uc011cfe.1_Missense_Mutation_p.G221K|NPNT_uc010ilt.1_Missense_Mutation_p.G191K|NPNT_uc011cff.1_Missense_Mutation_p.G191K|NPNT_uc010ilu.1_Missense_Mutation_p.G87K	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	191	EGF-like 4; calcium-binding (Potential).				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		CAACACTTTTGGGAGCTACATC	0.401													21	64					0	0	0.004672	0	0
LEF1	51176	broad.mit.edu	37	4	109002741	109002742	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:109002741_109002742CC>TT	uc003hyt.1	-	6	1377	c.722_splice	c.e6+1	p.R241_splice	LEF1_uc011cfj.1_Intron|LEF1_uc011cfk.1_Intron|LEF1_uc003hyu.1_Intron|LEF1_uc003hyv.1_Intron|LEF1_uc010imb.1_Splice_Site|LEF1_uc003hyw.1_5'Flank	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1						canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		CCTCCACCTACCTGGACATGGA	0.559													8	42					0	0	0.004672	0	0
RPL34	6164	broad.mit.edu	37	4	109546299	109546299	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:109546299C>T	uc003hyz.2	+	5	329	c.285C>T	c.(283-285)TTC>TTT	p.F95F	RPL34_uc003hza.2_Silent_p.F95F	NM_000995	NP_000986	P49207	RL34_HUMAN	ribosomal protein L34	95					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000286)		AGCGTGCTTTCCTTATCGAGG	0.318													14	26					0	0	0.024245	0	0
COL25A1	84570	broad.mit.edu	37	4	109780827	109780827	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:109780827G>A	uc003hze.1	-	23	1836	c.1305C>T	c.(1303-1305)CTC>CTT	p.L435L	COL25A1_uc003hzg.2_Silent_p.L435L|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Silent_p.L201L	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	435	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		AGGCTTCGTGGAGGTTGCCGT	0.488													11	22					0	0	0.008291	0	0
ENPEP	2028	broad.mit.edu	37	4	111397602	111397602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:111397602G>A	uc003iab.3	+	1	374	c.32G>A	c.(31-33)AGA>AAA	p.R11K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	11	Cytoplasmic (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GGCTCTAAGAGATACTGCATT	0.438													40	234					0	0	0.014410	0	0
ANK2	287	broad.mit.edu	37	4	114274809	114274809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:114274809G>A	uc003ibe.3	+	38	5135	c.5035G>A	c.(5035-5037)GGG>AGG	p.G1679R	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.G1694R	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1646					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGAAAAGGAAGGGAAAGACAT	0.463													7	54					0	0	0.001984	0	0
NDST3	9348	broad.mit.edu	37	4	118975183	118975183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:118975183G>A	uc003ibx.2	+	2	521	c.118G>A	c.(118-120)GAA>AAA	p.E40K	NDST3_uc011cgf.1_Missense_Mutation_p.E40K|NDST3_uc003ibw.2_Missense_Mutation_p.E40K	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	40	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CTACAAACAGGAAAATGAACT	0.423													11	54					0	0	0.008291	0	0
SYNPO2	171024	broad.mit.edu	37	4	119978661	119978661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:119978661G>A	uc010inb.2	+	5	3554	c.3358G>A	c.(3358-3360)GAT>AAT	p.D1120N	SYNPO2_uc011cgh.1_Silent_p.P121P|SYNPO2_uc010inc.2_Missense_Mutation_p.D990N	NM_133477	NP_597734	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TAAACCAACCGATGGACTAGA	0.488													45	79					0	0	0.009718	0	0
C4orf31	79625	broad.mit.edu	37	4	121958281	121958281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:121958281G>A	uc003idq.1	-	4	1372	c.845C>T	c.(844-846)TCC>TTC	p.S282F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	282	Fibronectin type-III 1.										0						CTTGGGCCTGGAGTAGACATG	0.443													21	49					0	0	0.012319	0	0
TNIP3	79931	broad.mit.edu	37	4	122068317	122068317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:122068317C>T	uc010ing.2	-	7	818	c.622G>A	c.(622-624)GAA>AAA	p.E208K	TNIP3_uc010inh.2_Missense_Mutation_p.E208K|TNIP3_uc011cgj.1_Missense_Mutation_p.E266K	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	208	Potential.									ovary(1)	1						AAGTCTTCTTCGTATATTTGC	0.368													32	53					0	0	0.012213	0	0
QRFPR	84109	broad.mit.edu	37	4	122250649	122250649	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:122250649C>T	uc010inj.1	-	6	1495	c.1116G>A	c.(1114-1116)AAG>AAA	p.K372K	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	372	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						ACTTTGCTTTCTTCCGCATCA	0.388													30	223					0	0	0.010818	0	0
KIAA1109	84162	broad.mit.edu	37	4	123145765	123145765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:123145765C>T	uc003ieh.2	+	21	2771	c.2726C>T	c.(2725-2727)TCC>TTC	p.S909F	KIAA1109_uc003iei.1_Missense_Mutation_p.S662F|KIAA1109_uc010ins.1_Missense_Mutation_p.S252F|KIAA1109_uc003iej.1_Missense_Mutation_p.S294F	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	909					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGAAGCGATTCCTTAGAATAC	0.463													16	67					0	0	0.024245	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590704	125590704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:125590704C>T	uc003ifg.3	-	3	3994	c.3728G>A	c.(3727-3729)GGA>GAA	p.G1243E	ANKRD50_uc011cgo.1_Missense_Mutation_p.G1064E|ANKRD50_uc010inw.2_Missense_Mutation_p.G1243E	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1243	Ser-rich.									central_nervous_system(1)	1						ATGACTCTGTCCTAAGGACTG	0.403													53	116					0	0	0.014410	0	0
FAT4	79633	broad.mit.edu	37	4	126329693	126329693	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:126329693C>T	uc003ifj.3	+	4	5664	c.5664C>T	c.(5662-5664)ATC>ATT	p.I1888I	FAT4_uc011cgp.1_Silent_p.I186I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1888	Cadherin 18.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAGATGGCATCTTTTTCCTGA	0.373													12	57					0	0	0.020292	0	0
FAT4	79633	broad.mit.edu	37	4	126411285	126411285	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:126411285G>A	uc003ifj.3	+	17	13308	c.13308G>A	c.(13306-13308)CAG>CAA	p.Q4436Q	FAT4_uc011cgp.1_Silent_p.Q2677Q|FAT4_uc003ifi.1_Silent_p.Q1913Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4436	EGF-like 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACCCGTGCCAGAATGGTGGCA	0.602													44	77					0	0	0.008740	0	0
PCDH18	54510	broad.mit.edu	37	4	138451960	138451960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:138451960C>T	uc003ihe.3	-	1	1670	c.1283G>A	c.(1282-1284)AGA>AAA	p.R428K	PCDH18_uc003ihf.3_Missense_Mutation_p.R421K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.R208K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	428	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATACTCAGATCTCTTTTCTCT	0.353													30	59					0	0	0.007291	0	0
NAA15	80155	broad.mit.edu	37	4	140299993	140299993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:140299993C>T	uc003ihu.1	+	17	2396	c.2140C>T	c.(2140-2142)CGT>TGT	p.R714C		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	714					angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						GTGTATGATTCGTCTCTTTAA	0.333													23	50					0	0	0.024334	0	0
RNF150	57484	broad.mit.edu	37	4	141847198	141847198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:141847198G>A	uc003iio.1	-	5	1574	c.920C>T	c.(919-921)CCC>CTC	p.P307L	RNF150_uc010iok.1_Missense_Mutation_p.P265L|RNF150_uc003iip.1_Missense_Mutation_p.P307L	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	307	Cytoplasmic (Potential).|RING-type; atypical.					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					TAGAAGCCAGGGGTCAACACA	0.488													21	56					0	0	0.014323	0	0
OTUD4	54726	broad.mit.edu	37	4	146065546	146065546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:146065546G>A	uc003ika.3	-	15	1406	c.1268C>T	c.(1267-1269)CCA>CTA	p.P423L	OTUD4_uc003ijz.3_Missense_Mutation_p.P422L	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	487							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					CTGGACACATGGATTGCTACT	0.378													38	165					0	0	0.023175	0	0
ZNF827	152485	broad.mit.edu	37	4	146700653	146700653	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:146700653C>T	uc003ikn.2	-	9	2442	c.2394G>A	c.(2392-2394)AAG>AAA	p.K798K	ZNF827_uc003ikm.2_Silent_p.K798K|ZNF827_uc010iox.2_Silent_p.K448K|ZNF827_uc003ikl.2_5'UTR	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	798					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CTAGGACTATCTTTTCTGTTT	0.418													38	58					0	0	0.025465	0	0
SLC10A7	84068	broad.mit.edu	37	4	147438251	147438251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:147438251G>A	uc010ioz.2	-	2	376	c.122C>T	c.(121-123)ACT>ATT	p.T41I	SLC10A7_uc003ikr.2_Missense_Mutation_p.T41I|SLC10A7_uc010ipa.2_Missense_Mutation_p.T41I|SLC10A7_uc003iks.2_RNA|SLC10A7_uc003ikt.2_Missense_Mutation_p.T41I|SLC10A7_uc003iku.3_RNA	NM_001029998	NP_001025169	Q0GE19	NTCP7_HUMAN	solute carrier family 10 (sodium/bile acid	41	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity				0	all_hematologic(180;0.151)					GTAGGATACAGTTATTTCTGG	0.338													97	201					0	0	0.014410	0	0
POU4F2	5458	broad.mit.edu	37	4	147561220	147561220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:147561220C>T	uc003ikv.2	+	2	738	c.490C>T	c.(490-492)CCT>TCT	p.P164S		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	164					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CATCTCGCACCCTTCCGCGTT	0.532													8	49					0	0	0.006214	0	0
TMEM154	201799	broad.mit.edu	37	4	153564299	153564299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:153564299G>A	uc003imw.1	-	5	525	c.419C>T	c.(418-420)TCT>TTT	p.S140F		NM_152680	NP_689893	Q6P9G4	TM154_HUMAN	transmembrane protein 154 precursor	140	Cytoplasmic (Potential).					integral to membrane					0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TTCCATAACAGAGGGTGTATC	0.338													12	69					0	0	0.016723	0	0
DCHS2	54798	broad.mit.edu	37	4	155249265	155249265	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:155249265A>G	uc003inw.2	-	12	2633	c.2633T>C	c.(2632-2634)GTT>GCT	p.V878A	DCHS2_uc003inx.2_Missense_Mutation_p.V1333A	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	878	Cadherin 7.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGAGTATGTAACTTCTGCATT	0.368													27	67					0	0	0.027356	0	0
FGB	2244	broad.mit.edu	37	4	155491730	155491730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:155491730G>A	uc003ioa.3	+	8	1443	c.1404G>A	c.(1402-1404)ATG>ATA	p.M468I	FGB_uc003iob.3_3'UTR|FGB_uc010ipv.2_Missense_Mutation_p.M406I|FGB_uc010ipw.2_3'UTR|FGB_uc003ioc.3_Missense_Mutation_p.M249I	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	468	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TAGTATGGATGAATTGGAAGG	0.468													23	39					0	0	0.018920	0	0
FGA	2243	broad.mit.edu	37	4	155507797	155507797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:155507797C>T	uc003iod.1	-	5	842	c.784G>A	c.(784-786)GAG>AAG	p.E262K	FGA_uc003ioe.1_Missense_Mutation_p.E262K|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	262	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCAGGTCTCTCTAACTCCATT	0.517													19	109					0	0	0.008871	0	0
FGG	2266	broad.mit.edu	37	4	155528085	155528085	+	Missense_Mutation	SNP	G	C	C	rs121913087		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:155528085G>C	uc003ioj.2	-	8	1042	c.901C>G	c.(901-903)CGC>GGC	p.R301G	FGG_uc003iog.2_Missense_Mutation_p.R301G|FGG_uc003ioh.2_Missense_Mutation_p.R309G|FGG_uc010ipx.2_Missense_Mutation_p.R129G|FGG_uc010ipy.2_Missense_Mutation_p.R12G|FGG_uc003ioi.2_Missense_Mutation_p.R12G|FGG_uc003iok.2_Missense_Mutation_p.R309G	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	301	Fibrinogen C-terminal.		R -> H (in Bergamo-2/Essen/Haifa/Osaka-3/ Perugia/Saga/Barcelona-3/Barcelona-4).|R -> C (in Tochigi/Osaka-2/Milano-5/ Villajoyosa).		platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TATGTTAGGCGGTACTTGTCA	0.478													34	64					0	0	0.015359	0	0
RBM46	166863	broad.mit.edu	37	4	155718046	155718046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:155718046C>T	uc003ioo.2	+	2	315	c.142C>T	c.(142-144)CCT>TCT	p.P48S	RBM46_uc011cim.1_Missense_Mutation_p.P48S|RBM46_uc003iop.1_Missense_Mutation_p.P48S	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	48							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				ATTTGGCGGTCCTCCTCCAGG	0.383													10	44					0	0	0.008291	0	0
NPY2R	4887	broad.mit.edu	37	4	156135439	156135439	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:156135439G>A	uc003ioq.2	+	2	843	c.348G>A	c.(346-348)TGG>TGA	p.W116*	NPY2R_uc003ior.2_Nonsense_Mutation_p.W116*	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	116	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TGGGGGAGTGGAAAATGGGTC	0.507													24	37					0	0	0.021523	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632278	156632278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:156632278G>A	uc003iov.2	+	7	1497	c.961G>A	c.(961-963)GAA>AAA	p.E321K	GUCY1A3_uc003iou.2_Missense_Mutation_p.E321K|GUCY1A3_uc010iqc.2_Missense_Mutation_p.E321K|GUCY1A3_uc003iow.2_Missense_Mutation_p.E321K|GUCY1A3_uc010iqd.2_Missense_Mutation_p.E320K|GUCY1A3_uc003iox.2_Missense_Mutation_p.E321K|GUCY1A3_uc003ioz.2_Missense_Mutation_p.E86K|GUCY1A3_uc003ioy.2_Missense_Mutation_p.E321K|GUCY1A3_uc010iqe.2_Missense_Mutation_p.E86K|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.E321K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	321					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GCCTAATTTTGAAGAATACTT	0.383													18	53					0	0	0.007413	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632399	156632399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:156632399C>T	uc003iov.2	+	7	1618	c.1082C>T	c.(1081-1083)TCA>TTA	p.S361L	GUCY1A3_uc003iou.2_Missense_Mutation_p.S361L|GUCY1A3_uc010iqc.2_Missense_Mutation_p.S361L|GUCY1A3_uc003iow.2_Missense_Mutation_p.S361L|GUCY1A3_uc010iqd.2_Missense_Mutation_p.S360L|GUCY1A3_uc003iox.2_Missense_Mutation_p.S361L|GUCY1A3_uc003ioz.2_Missense_Mutation_p.S126L|GUCY1A3_uc003ioy.2_Missense_Mutation_p.S361L|GUCY1A3_uc010iqe.2_Missense_Mutation_p.S126L|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.S361L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	361					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AAAAAATCTTCAAGGGTAAGG	0.338													5	57					0	0	0.014758	0	0
ACCN5	51802	broad.mit.edu	37	4	156773440	156773440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:156773440C>T	uc003ipe.1	-	4	661	c.614G>A	c.(613-615)GGA>GAA	p.G205E		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	205	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		AAAACAATTTCCATATTCAGT	0.343													6	35					0	0	0.021553	0	0
GLRB	2743	broad.mit.edu	37	4	158041795	158041795	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:158041795G>A	uc003ipj.2	+	3	412	c.210G>A	c.(208-210)AGG>AGA	p.R70R		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	70	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	ATGATCCCAGGATAAGACCAA	0.348													4	25					0	0	0.009096	0	0
GRIA2	2891	broad.mit.edu	37	4	158254081	158254081	+	Silent	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:158254081G>C	uc003ipm.3	+	7	1452	c.993G>C	c.(991-993)CTG>CTC	p.L331L	GRIA2_uc011cit.1_Silent_p.L284L|GRIA2_uc003ipl.3_Silent_p.L331L|GRIA2_uc003ipk.3_Silent_p.L284L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	331	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GAGACTGTCTGGCAAACCCAG	0.478													8	41					0	0	0.004482	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160264545	160264545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:160264545G>A	uc003iqg.3	+	16	3070	c.2760G>A	c.(2758-2760)ATG>ATA	p.M920I		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	920	Ras-GEF.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity	p.G920E(1)		lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		CTGCCCTCATGTTCAGGACTC	0.423													17	102					0	0	0.008871	0	0
NPY1R	4886	broad.mit.edu	37	4	164247687	164247687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:164247687G>A	uc003iqm.1	-	2	286	c.20C>T	c.(19-21)TCC>TTC	p.S7F	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	7	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TTCAACCTGGGAAAATAATGT	0.358													25	47					0	0	0.018920	0	0
TKTL2	84076	broad.mit.edu	37	4	164393517	164393517	+	Missense_Mutation	SNP	G	A	A	rs145423814		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:164393517G>A	uc003iqp.3	-	1	1531	c.1370C>T	c.(1369-1371)TCG>TTG	p.S457L		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	457						cytoplasm	metal ion binding|transketolase activity	p.S457L(1)		ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGCTCTGTCGAGATGGCATC	0.463													34	173					0	0	0.019004	0	0
TKTL2	84076	broad.mit.edu	37	4	164394139	164394139	+	Missense_Mutation	SNP	G	A	A	rs140696676		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:164394139G>A	uc003iqp.3	-	1	909	c.748C>T	c.(748-750)CGG>TGG	p.R250W		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	250						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GGAATACCCCGACCTTTGAAG	0.438													119	184					0	0	0.014410	0	0
TKTL2	84076	broad.mit.edu	37	4	164394754	164394754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:164394754C>T	uc003iqp.3	-	1	294	c.133G>A	c.(133-135)GCA>ACA	p.A45T		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	45						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACCTCCGCTGCACTGCAGCAC	0.602													12	44					0	0	0.010729	0	0
ANP32C	23520	broad.mit.edu	37	4	165118227	165118227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:165118227C>T	uc011cjk.1	-	1	637	c.637G>A	c.(637-639)GGA>AGA	p.G213R	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	213	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		tctacctctccatcgttataa	0.02													5	24					0	0	0.001984	0	0
TRIM60	166655	broad.mit.edu	37	4	165961516	165961516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:165961516G>A	uc003iqy.1	+	3	462	c.292G>A	c.(292-294)GAA>AAA	p.E98K	TRIM60_uc010iqx.1_Missense_Mutation_p.E98K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	98	B box-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		TGCCATGTGTGAAAAACACAA	0.428													36	75					0	0	0.017118	0	0
SPOCK3	50859	broad.mit.edu	37	4	168155141	168155141	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:168155141G>A	uc003iri.1	-	2	325	c.184C>T	c.(184-186)CGA>TGA	p.R62*	SPOCK3_uc011cjp.1_Nonsense_Mutation_p.R62*|SPOCK3_uc011cjq.1_Nonsense_Mutation_p.R74*|SPOCK3_uc011cjr.1_5'UTR|SPOCK3_uc003irj.1_Nonsense_Mutation_p.R62*|SPOCK3_uc011cjs.1_5'UTR|SPOCK3_uc011cjt.1_5'UTR|SPOCK3_uc011cju.1_Silent_p.S11S|SPOCK3_uc011cjv.1_Nonsense_Mutation_p.R62*|SPOCK3_uc003irk.3_Nonsense_Mutation_p.R62*|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	62					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CTTACGTCTCGGAATTTGTTC	0.527													14	85					0	0	0.028581	0	0
ANXA10	11199	broad.mit.edu	37	4	169049279	169049279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:169049279G>A	uc003irm.2	+	2	208	c.63G>A	c.(61-63)ATG>ATA	p.M21I		NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	21	Annexin 1.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		ATCCCATAATGGATGCCCAAA	0.363													21	22					0	0	0.018920	0	0
DDX60	55601	broad.mit.edu	37	4	169188759	169188759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:169188759G>A	uc003irp.2	-	22	3305	c.3013C>T	c.(3013-3015)CCA>TCA	p.P1005S		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1005							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GCAGCACATGGGTGAAAATGA	0.289													22	64					0	0	0.018920	0	0
DDX60L	91351	broad.mit.edu	37	4	169300898	169300898	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:169300898G>A	uc003irq.3	-	31	4421	c.4200C>T	c.(4198-4200)TCC>TCT	p.S1400S		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1400							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GGAGCTGCAAGGAAAACAAAA	0.368													7	39					0	0	0.001984	0	0
MORF4	10934	broad.mit.edu	37	4	174537649	174537649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:174537649C>T	uc011cke.1	-	1	146	c.146G>A	c.(145-147)AGG>AAG	p.R49K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TACCTGGGCCCTTTTCTTTCG	0.398													47	91					0	0	0.011902	0	0
KIAA1712	80817	broad.mit.edu	37	4	175224860	175224860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:175224860C>T	uc003itr.2	+	5	658	c.244C>T	c.(244-246)CGT>TGT	p.R82C	KIAA1712_uc010iro.2_Missense_Mutation_p.R82C|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	82						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		GCAGCTTCTTCGTGATCAATT	0.343													4	47					0	0	0.021553	0	0
ODZ3	55714	broad.mit.edu	37	4	183673086	183673086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:183673086G>A	uc003ivd.1	+	19	3800	c.3763G>A	c.(3763-3765)GAA>AAA	p.E1255K	ODZ3_uc003ive.1_Missense_Mutation_p.E668K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1255	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TAAAAATGCAGAAGTCGTCGC	0.537													16	68					0	0	0.024245	0	0
ODZ3	55714	broad.mit.edu	37	4	183717822	183717822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:183717822C>T	uc003ivd.1	+	26	7283	c.7246C>T	c.(7246-7248)CAT>TAT	p.H2416Y		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2416	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATTTGGTTTCCATCTGCACAA	0.388													17	28					0	0	0.008871	0	0
ING2	3622	broad.mit.edu	37	4	184431602	184431602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:184431602C>T	uc003ivs.1	+	2	469	c.340C>T	c.(340-342)CGG>TGG	p.R114W	ING2_uc011ckk.1_Missense_Mutation_p.R74W	NM_001564	NP_001555	Q9H160	ING2_HUMAN	inhibitor of growth family, member 2	114	Potential.				chromatin modification|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of growth|signal transduction|transcription, DNA-dependent	CCAAT-binding factor complex|Sin3 complex	chromatin binding|DNA binding|protein complex binding|zinc ion binding			ovary(1)	1		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|all_hematologic(60;0.0207)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		GGTGGAAAATCGGGCAAGACA	0.418													23	166					0	0	0.016522	0	0
ENPP6	133121	broad.mit.edu	37	4	185038965	185038965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:185038965C>T	uc003iwc.2	-	4	764	c.622G>A	c.(622-624)GAT>AAT	p.D208N		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	208	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TTGAGGGCATCTTTCCTCTGC	0.587													32	146					0	0	0.019004	0	0
KLKB1	3818	broad.mit.edu	37	4	187158058	187158058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:187158058C>T	uc003iyy.2	+	5	523	c.452C>T	c.(451-453)TCA>TTA	p.S151L	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.S113L	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	151	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CAGTTTTTTTCATATGCCACG	0.413													33	74					0	0	0.015359	0	0
FAT1	2195	broad.mit.edu	37	4	187517878	187517878	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:187517878G>A	uc003izf.2	-	25	13004	c.12816C>T	c.(12814-12816)TCC>TCT	p.S4272S	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Silent_p.S163S	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4272	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATCCTTCGAAGGAATTTCGGT	0.532										HNSCC(5;0.00058)			13	49					0	0	0.024245	0	0
TRIML2	205860	broad.mit.edu	37	4	189020328	189020328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:189020328C>T	uc003izl.2	-	4	368	c.332G>A	c.(331-333)AGA>AAA	p.R111K	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Missense_Mutation_p.R161K|TRIML2_uc011clf.1_Missense_Mutation_p.R161K	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	111	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ACGGCCCAGTCTCTGCAGAAG	0.453													39	216					0	0	0.008740	0	0
TRIML1	339976	broad.mit.edu	37	4	189060973	189060973	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:189060973G>A	uc003izm.1	+	1	376	c.261G>A	c.(259-261)CAG>CAA	p.Q87Q		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	87					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGGTGCTGCAGAGCGAGGATG	0.657													29	67					0	0	0.006320	0	0
TRIML1	339976	broad.mit.edu	37	4	189068214	189068214	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr4:189068214G>A	uc003izm.1	+	6	1210	c.1095G>A	c.(1093-1095)AAG>AAA	p.K365K	TRIML1_uc003izn.1_Silent_p.K89K	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	365	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		TGAGCAGAAAGGGGAATCTCC	0.522													16	106					0	0	0.006122	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1338079	1338079	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:1338079G>A	uc003jch.2	-	5	664	c.618C>T	c.(616-618)ACC>ACT	p.T206T	CLPTM1L_uc003jcg.2_Silent_p.T73T	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	206	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GGTAATGCACGGTTTTCCCCA	0.522													10	31					0	0	0.013537	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441511	1441511	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:1441511C>T	uc003jck.2	-	3	502	c.381G>A	c.(379-381)GGG>GGA	p.G127G		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	127					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CACCAGCGGCCCCTTCCCTGT	0.597													38	104					0	0	0.023175	0	0
SLC6A3	6531	broad.mit.edu	37	5	1443052	1443052	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:1443052G>A	uc003jck.2	-	2	382	c.261C>T	c.(259-261)CCC>CCT	p.P87P		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	87	Helical; Name=1; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGCACAGGTAGGGGAACCGCC	0.632													53	152					0	0	0.014410	0	0
IRX2	153572	broad.mit.edu	37	5	2749165	2749165	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:2749165C>T	uc003jda.2	-	3	899	c.657G>A	c.(655-657)GGG>GGA	p.G219G	IRX2_uc003jdb.2_Silent_p.G219G	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	219						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		GCAGGCTGATCCCTGTGGGGG	0.741													11	32					0	0	0.010729	0	0
IRX2	153572	broad.mit.edu	37	5	2749629	2749629	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:2749629C>T	uc003jda.2	-	2	764	c.522G>A	c.(520-522)AAG>AAA	p.K174K	C5orf38_uc003jdc.2_5'Flank|C5orf38_uc011cmg.1_5'Flank|C5orf38_uc011cmh.1_5'Flank|C5orf38_uc011cmi.1_5'Flank|C5orf38_uc011cmj.1_5'Flank|IRX2_uc003jdb.2_Silent_p.K174K	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	174	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		TCTTGTTCTCCTTCTTGAGGC	0.602													75	186					0	0	0.014410	0	0
IRX1	79192	broad.mit.edu	37	5	3599405	3599405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:3599405C>T	uc003jde.2	+	2	395	c.343C>T	c.(343-345)CCG>TCG	p.P115S		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	115						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						CCACACGGCGCCGGCTTATTA	0.632													33	76					0	0	0.019004	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457799	5457799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:5457799C>T	uc003jdm.3	+	12	1268	c.1046C>T	c.(1045-1047)TCG>TTG	p.S349L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	349	Pro-rich.									ovary(1)|central_nervous_system(1)	2						CCAGTGCCCTCGCCCCCTCCG	0.448													119	270					0	0	0.014410	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461381	5461381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:5461381C>T	uc003jdm.3	+	13	2156	c.1934C>T	c.(1933-1935)CCC>CTC	p.P645L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	645										ovary(1)|central_nervous_system(1)	2						GGCAGTAATCCCCAGTCTTCT	0.398													39	98					0	0	0.008740	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461387	5461387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:5461387C>T	uc003jdm.3	+	13	2162	c.1940C>T	c.(1939-1941)TCT>TTT	p.S647F		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	647										ovary(1)|central_nervous_system(1)	2						AATCCCCAGTCTTCTTCTGGG	0.393													37	104					0	0	0.023175	0	0
KIAA0947	23379	broad.mit.edu	37	5	5464339	5464339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:5464339C>T	uc003jdm.3	+	13	5114	c.4892C>T	c.(4891-4893)CCT>CTT	p.P1631L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1631	Pro-rich.									ovary(1)|central_nervous_system(1)	2						GTGGGGCCTCCTTTGCCGCCT	0.498													40	138					0	0	0.023175	0	0
CMBL	134147	broad.mit.edu	37	5	10290680	10290680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:10290680C>T	uc003jes.2	-	2	646	c.195G>A	c.(193-195)ATG>ATA	p.M65I		NM_138809	NP_620164	Q96DG6	CMBL_HUMAN	carboxymethylenebutenolidase	65						cytosol	hydrolase activity|protein binding			skin(1)	1						TTCCTGAGATCATGTCAGCTA	0.353													71	152					0	0	0.014410	0	0
CTNND2	1501	broad.mit.edu	37	5	10992789	10992789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:10992789C>T	uc003jfa.1	-	19	3230	c.3085G>A	c.(3085-3087)GAT>AAT	p.D1029N	CTNND2_uc010itt.2_Missense_Mutation_p.D938N|CTNND2_uc011cmy.1_Missense_Mutation_p.D692N|CTNND2_uc011cmz.1_Missense_Mutation_p.D596N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.D621N	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1029					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GACCATCCATCCTGCAAAACA	0.498													49	192					0	0	0.014410	0	0
CTNND2	1501	broad.mit.edu	37	5	11098815	11098815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:11098815C>T	uc003jfa.1	-	15	2654	c.2509G>A	c.(2509-2511)GGG>AGG	p.G837R	CTNND2_uc010itt.2_Missense_Mutation_p.G746R|CTNND2_uc011cmy.1_Missense_Mutation_p.G500R|CTNND2_uc011cmz.1_Missense_Mutation_p.G404R|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.G404R	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	837	ARM 7.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ATCTGGATCCCTTTTGGTGGT	0.517													25	69					0	0	0.024334	0	0
DNAH5	1767	broad.mit.edu	37	5	13692205	13692205	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13692205T>C	uc003jfd.2	-	79	13805	c.13763A>G	c.(13762-13764)AAG>AGG	p.K4588R	DNAH5_uc003jfc.2_Missense_Mutation_p.K756R	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4588					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AACTGGCTTCTTATAGATGGG	0.473									Kartagener_syndrome				20	47					0	0	0.018920	0	0
DNAH5	1767	broad.mit.edu	37	5	13701465	13701465	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13701465G>A	uc003jfd.2	-	77	13461	c.13419C>T	c.(13417-13419)TTC>TTT	p.F4473F	DNAH5_uc003jfc.2_Silent_p.F641F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4473					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCGGCCATTGAAAACCCACG	0.438									Kartagener_syndrome				41	91					0	0	0.007835	0	0
DNAH5	1767	broad.mit.edu	37	5	13721244	13721244	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13721244G>A	uc003jfd.2	-	71	12186	c.12144C>T	c.(12142-12144)CTC>CTT	p.L4048L	DNAH5_uc003jfc.2_Silent_p.L216L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4048	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCATAGACAGGAGACAGATGA	0.498									Kartagener_syndrome				30	83					0	0	0.012213	0	0
DNAH5	1767	broad.mit.edu	37	5	13727711	13727712	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13727711_13727712CC>TT	uc003jfd.2	-	70	11979_11980	c.11937_11938GG>AA	c.(11935-11940)GAGGAG>GAAAAG	p.E3980K	DNAH5_uc003jfc.2_Missense_Mutation_p.E148K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3980					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGGTTCCTCCTCCGGGTTTT	0.416									Kartagener_syndrome				16	62					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13759062	13759062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13759062G>A	uc003jfd.2	-	61	10354	c.10312C>T	c.(10312-10314)CTC>TTC	p.L3438F	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3438	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATGGCCAGGAGATGGCGATTC	0.547									Kartagener_syndrome				51	110					0	0	0.014410	0	0
DNAH5	1767	broad.mit.edu	37	5	13781069	13781069	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13781069C>T	uc003jfd.2	-	53	8863	c.8821_splice	c.e53-1	p.I2941_splice		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACGAGAGATCTGTAATATGG	0.398									Kartagener_syndrome				7	22					0	0	0.004482	0	0
DNAH5	1767	broad.mit.edu	37	5	13793828	13793828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13793828C>T	uc003jfd.2	-	49	8062	c.8020G>A	c.(8020-8022)GAG>AAG	p.E2674K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2674	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGCACTATCTCATTCGTAACC	0.423									Kartagener_syndrome				20	53					0	0	0.007413	0	0
DNAH5	1767	broad.mit.edu	37	5	13817791	13817791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13817791G>A	uc003jfd.2	-	42	6896	c.6854C>T	c.(6853-6855)CCA>CTA	p.P2285L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2285	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCCCGATGTGGTTTTCCACA	0.423									Kartagener_syndrome				28	64					0	0	0.010818	0	0
DNAH5	1767	broad.mit.edu	37	5	13829789	13829789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13829789C>T	uc003jfd.2	-	38	6316	c.6274G>A	c.(6274-6276)GAA>AAA	p.E2092K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2092	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGGGAGTTCCTGCCGTCCG	0.428									Kartagener_syndrome				16	51					0	0	0.004990	0	0
DNAH5	1767	broad.mit.edu	37	5	13845060	13845060	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13845060G>A	uc003jfd.2	-	32	5199	c.5157C>T	c.(5155-5157)TTC>TTT	p.F1719F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1719	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCTGAGACGAAGAAAAACC	0.448									Kartagener_syndrome				27	65					0	0	0.006320	0	0
DNAH5	1767	broad.mit.edu	37	5	13871743	13871743	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13871743G>A	uc003jfd.2	-	23	3570	c.3528C>T	c.(3526-3528)TTC>TTT	p.F1176F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1176	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTAGGTTTTGGAAATAGAGAA	0.383									Kartagener_syndrome				14	39					0	0	0.024245	0	0
DNAH5	1767	broad.mit.edu	37	5	13900318	13900318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13900318C>T	uc003jfd.2	-	15	2298	c.2256G>A	c.(2254-2256)ATG>ATA	p.M752I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	752	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTATACCTTCATGTTACTGA	0.358									Kartagener_syndrome				26	46					0	0	0.021523	0	0
DNAH5	1767	broad.mit.edu	37	5	13901576	13901576	+	Missense_Mutation	SNP	C	T	T	rs141072655		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13901576C>T	uc003jfd.2	-	14	1879	c.1837G>A	c.(1837-1839)GAT>AAT	p.D613N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	613	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGGAGGATCGTATTTCTGC	0.448									Kartagener_syndrome				18	31					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13931251	13931251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:13931251C>T	uc003jfd.2	-	2	202	c.160G>A	c.(160-162)GAA>AAA	p.E54K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	54	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCTCCACTTCGGTTTTGTTC	0.488									Kartagener_syndrome				30	79					0	0	0.008361	0	0
ZNF622	90441	broad.mit.edu	37	5	16463741	16463741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:16463741G>A	uc003jfq.2	-	2	856	c.736C>T	c.(736-738)CTT>TTT	p.L246F		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	246						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						ATGGCACCAAGGGGTGGGCCT	0.478													121	296					0	0	0.014410	0	0
CDH18	1016	broad.mit.edu	37	5	19591224	19591224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:19591224C>T	uc003jgc.2	-	6	1318	c.941G>A	c.(940-942)GGA>GAA	p.G314E	CDH18_uc003jgd.2_Missense_Mutation_p.G314E|CDH18_uc011cnm.1_Missense_Mutation_p.G314E	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	314	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TGAGAATATTCCCATGCCATC	0.408													22	52					0	0	0.014323	0	0
CDH18	1016	broad.mit.edu	37	5	19591256	19591256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:19591256C>T	uc003jgc.2	-	6	1286	c.909G>A	c.(907-909)ATG>ATA	p.M303I	CDH18_uc003jgd.2_Missense_Mutation_p.M303I|CDH18_uc011cnm.1_Missense_Mutation_p.M303I	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	303	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TGGAGTAGGTCATGTCAGCAT	0.413													15	61					0	0	0.006122	0	0
GUSBP1	728411	broad.mit.edu	37	5	21461940	21461940	+	Missense_Mutation	SNP	G	A	A	rs137972597	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:21461940G>A	uc010iub.2	+	3	220	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	GUSBP1_uc011cnn.1_RNA|GUSBP1_uc003jgh.3_RNA|GUSBP1_uc003jgf.3_Missense_Mutation_p.R47Q|GUSBP1_uc003jgg.3_RNA	NR_027028				SubName: Full=Putative uncharacterized protein GUSBL2;												0						GAACAAACTCGAAGAACAGCT	0.368													68	120					0	0	0.014410	0	0
CDH12	1010	broad.mit.edu	37	5	21752268	21752268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:21752268C>T	uc010iuc.2	-	12	2421	c.1963G>A	c.(1963-1965)GAC>AAC	p.D655N	CDH12_uc011cno.1_Missense_Mutation_p.D615N|CDH12_uc003jgk.2_Missense_Mutation_p.D655N|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	655	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						ATGACGTTGTCTCTGATGTCT	0.453										HNSCC(59;0.17)			27	47					0	0	0.021523	0	0
PRDM9	56979	broad.mit.edu	37	5	23509152	23509152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:23509152G>A	uc003jgo.2	+	2	192	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	4					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CATGAGCCCTGAAAAGTCCCA	0.572										HNSCC(3;0.000094)			16	59					0	0	0.006122	0	0
PRDM9	56979	broad.mit.edu	37	5	23510112	23510112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:23510112G>A	uc003jgo.2	+	4	459	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	93					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGATTCTGATGAAGAATGGAC	0.363										HNSCC(3;0.000094)			24	95					0	0	0.021523	0	0
PRDM9	56979	broad.mit.edu	37	5	23522461	23522461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:23522461G>A	uc003jgo.2	+	7	739	c.557G>A	c.(556-558)AGA>AAA	p.R186K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	186					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTGCGAGAAAGAAAGGGTCAT	0.473										HNSCC(3;0.000094)			39	142					0	0	0.010771	0	0
CDH9	1007	broad.mit.edu	37	5	26881634	26881634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:26881634C>T	uc003jgs.1	-	12	2150	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	CDH9_uc011cnv.1_Missense_Mutation_p.D254N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	661	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCGCCTTCATCGTTGTAGGTC	0.438													31	78					0	0	0.012213	0	0
CDH6	1004	broad.mit.edu	37	5	31299721	31299721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:31299721C>T	uc003jhe.1	+	5	1120	c.794C>T	c.(793-795)CCT>CTT	p.P265L	CDH6_uc003jhd.1_Missense_Mutation_p.P265L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	265	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AACGACAACCCTCCCCGATTC	0.428													25	53					0	0	0.006320	0	0
RNASEN	29102	broad.mit.edu	37	5	31515325	31515325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:31515325G>A	uc003jhg.2	-	7	1419	c.1060C>T	c.(1060-1062)CGC>TGC	p.R354C	RNASEN_uc003jhh.2_Missense_Mutation_p.R317C|RNASEN_uc003jhi.2_Missense_Mutation_p.R317C|RNASEN_uc010iui.1_Missense_Mutation_p.R277C	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	354					gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CTTGGGGAGCGACTTCAAAAG	0.393													32	76					0	0	0.010818	0	0
NPR3	4883	broad.mit.edu	37	5	32724811	32724811	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:32724811C>T	uc003jhv.2	+	2	995	c.777C>T	c.(775-777)ATC>ATT	p.I259I	NPR3_uc010iuo.2_Silent_p.I43I|NPR3_uc011cnz.1_Silent_p.I43I|NPR3_uc003jhu.2_Silent_p.I259I	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	259	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TAGTGGTGATCATGTGTGCGA	0.443													24	71					0	0	0.014323	0	0
DNAJC21	134218	broad.mit.edu	37	5	34936318	34936318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:34936318G>A	uc003jjc.2	+	4	612	c.385G>A	c.(385-387)GAA>AAA	p.E129K	DNAJC21_uc003jjb.2_Missense_Mutation_p.E129K|DNAJC21_uc010iuu.1_Missense_Mutation_p.E13K	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	129					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TGTGTTAGAGGAAGAGGTTGA	0.328													59	184					0	0	0.014410	0	0
DNAJC21	134218	broad.mit.edu	37	5	34950309	34950309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:34950309G>A	uc003jjc.2	+	10	1447	c.1220G>A	c.(1219-1221)GGA>GAA	p.G407E	DNAJC21_uc003jjb.2_Missense_Mutation_p.G452E|DNAJC21_uc010iuu.1_Missense_Mutation_p.G304E|DNAJC21_uc003jjd.2_RNA	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	407					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			AATGGACCTGGAGAAGGAGTA	0.333													48	117					0	0	0.014410	0	0
PRLR	5618	broad.mit.edu	37	5	35065952	35065952	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:35065952T>C	uc003jjm.2	-	10	1638	c.1108A>G	c.(1108-1110)AAT>GAT	p.N370D	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.N269D	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	370	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GTGGAGGGATTGGCCTGGGGT	0.522													34	60					0	0	0.010818	0	0
IL7R	3575	broad.mit.edu	37	5	35875685	35875685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:35875685G>A	uc003jjs.2	+	7	961	c.872G>A	c.(871-873)AGA>AAA	p.R291K	IL7R_uc011coo.1_Missense_Mutation_p.E260K|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	291	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			AAGAAACCAAGAAAAGTGAGT	0.413													6	37					0	0	0.021553	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965728	35965728	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:35965728C>T	uc003jjv.1	-	4	760	c.603G>A	c.(601-603)GTG>GTA	p.V201V	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.V201V|UGT3A1_uc011cor.1_Silent_p.V167V|UGT3A1_uc003jjy.1_Silent_p.V147V	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	201	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAAAATTCTTCACTCGGCCCC	0.478													22	57					0	0	0.016522	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035968	36035968	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:36035968C>T	uc003jjz.1	-	7	1497	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A	UGT3A2_uc011cos.1_Silent_p.A434A|UGT3A2_uc011cot.1_Silent_p.A166A	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	468	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity	p.A468T(1)		ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGAGGTGCGTCGCGCCCCCTG	0.637													12	42					0	0	0.010729	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039616	36039616	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:36039616C>T	uc003jjz.1	-	5	1131	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V	UGT3A2_uc011cos.1_Silent_p.V312V|UGT3A2_uc011cot.1_Silent_p.V44V	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	346	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCACAATTTTCACATTTGCAG	0.532													42	101					0	0	0.010771	0	0
C5orf42	65250	broad.mit.edu	37	5	37121752	37121752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:37121752G>A	uc011cpa.1	-	48	9221	c.8990C>T	c.(8989-8991)TCT>TTT	p.S2997F	C5orf42_uc003jko.1_Missense_Mutation_p.S28F|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.S1515F|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.S2090F	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2997										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ACAACTGGAAGACTGAGTAGG	0.458													19	61					0	0	0.007413	0	0
LIFR	3977	broad.mit.edu	37	5	38486020	38486020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:38486020C>T	uc010ive.1	-	17	2730	c.2398G>A	c.(2398-2400)GAT>AAT	p.D800N	LIFR_uc003jli.2_Missense_Mutation_p.D800N	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	800	Fibronectin type-III 6.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CCTTGAAGATCAGCAATTCTC	0.388			T	PLAG1	salivary adenoma								24	69					0	0	0.018920	0	0
OSMR	9180	broad.mit.edu	37	5	38876418	38876418	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:38876418G>A	uc003jln.1	+	3	556	c.189G>A	c.(187-189)TTG>TTA	p.L63L	OSMR_uc003jlm.1_Silent_p.L63L	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	63	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ATCAGGAATTGAAAATGGTAT	0.358													35	54					0	0	0.013726	0	0
OSMR	9180	broad.mit.edu	37	5	38881752	38881752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:38881752G>A	uc003jln.1	+	4	671	c.304G>A	c.(304-306)GAG>AAG	p.E102K	OSMR_uc003jlm.1_Missense_Mutation_p.E102K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	102	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTGGGAATCTGAGCTCCCTTT	0.463													24	81					0	0	0.018920	0	0
FYB	2533	broad.mit.edu	37	5	39110480	39110480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:39110480G>A	uc003jls.2	-	15	2342	c.2275C>T	c.(2275-2277)CTT>TTT	p.L759F	FYB_uc003jlt.2_Missense_Mutation_p.L805F|FYB_uc003jlu.2_Missense_Mutation_p.L759F|FYB_uc011cpl.1_Missense_Mutation_p.L815F	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	759					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TAACTCCGAAGGACATAACCA	0.299													6	14					0	0	0.021553	0	0
PTGER4	5734	broad.mit.edu	37	5	40681212	40681212	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:40681212C>T	uc003jlz.2	+	2	709	c.117C>T	c.(115-117)ATC>ATT	p.I39I		NM_000958	NP_000949	P35408	PE2R4_HUMAN	prostaglandin E receptor 4, subtype EP4	39	Helical; Name=1; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|immune response	integral to membrane|plasma membrane	prostaglandin E receptor activity			lung(2)	2						TGGTGGCCATCGTGGTGCTGT	0.607											OREG0016588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	120					0	0	0.014410	0	0
CARD6	84674	broad.mit.edu	37	5	40853616	40853616	+	Silent	SNP	C	T	T	rs139253407	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:40853616C>T	uc003jmg.2	+	3	2257	c.2182C>T	c.(2182-2184)CTA>TTA	p.L728L		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	728					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CAGGCCTGTTCTAGAGAACTC	0.488													124	316					0	0	0.014410	0	0
C7	730	broad.mit.edu	37	5	40955571	40955571	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:40955571G>A	uc003jmh.2	+	10	1290	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	392	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTTACCTAGAGCTGGACAATC	0.453													35	78					0	0	0.015359	0	0
C7	730	broad.mit.edu	37	5	40964859	40964859	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:40964859T>A	uc003jmh.2	+	14	1880	c.1766T>A	c.(1765-1767)TTT>TAT	p.F589Y	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	589	Sushi 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GGTACAATGTTTCCTGTGGGG	0.368													17	50					0	0	0.004990	0	0
C7	730	broad.mit.edu	37	5	40980000	40980000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:40980000G>A	uc003jmh.2	+	17	2453	c.2339G>A	c.(2338-2340)GGA>GAA	p.G780E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	780	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CCACTGTGGGGAAAATGTGAT	0.453													10	23					0	0	0.006214	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004463	41004463	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:41004463C>T	uc003jmj.3	-	37	4669	c.4179G>A	c.(4177-4179)AGG>AGA	p.R1393R	HEATR7B2_uc003jmi.3_Silent_p.R948R	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1393	HEAT 15.						binding			ovary(6)|central_nervous_system(2)	8						CAAAGAAGGTCCTTGTTTGCA	0.423													41	111					0	0	0.010771	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018857	41018857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:41018857C>T	uc003jmj.3	-	26	3099	c.2609G>A	c.(2608-2610)GGA>GAA	p.G870E	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G425E	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	870							binding			ovary(6)|central_nervous_system(2)	8						CAGAAGTTTTCCTAGGGCGTC	0.448													18	65					0	0	0.008871	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018871	41018871	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:41018871G>A	uc003jmj.3	-	26	3085	c.2595C>T	c.(2593-2595)TCC>TCT	p.S865S	HEATR7B2_uc003jmi.3_Silent_p.S420S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	865							binding			ovary(6)|central_nervous_system(2)	8						GGGCGTCCATGGATCGTTCAT	0.458													23	56					0	0	0.016522	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41065470	41065470	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:41065470G>A	uc003jmj.3	-	4	814	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	108							binding			ovary(6)|central_nervous_system(2)	8						CAAGCACAACGAATTCATCTG	0.418													8	18					0	0	0.003080	0	0
C6	729	broad.mit.edu	37	5	41149420	41149420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:41149420C>T	uc003jmk.2	-	17	2756	c.2546G>A	c.(2545-2547)AGG>AAG	p.R849K	C6_uc003jml.1_Missense_Mutation_p.R849K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	849	C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AAGTCTTGTCCTTTCAAGACC	0.418													37	130					0	0	0.025465	0	0
GHR	2690	broad.mit.edu	37	5	42718947	42718947	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:42718947C>T	uc003jmt.2	+	10	1381	c.1338C>T	c.(1336-1338)CCC>CCT	p.P446P	GHR_uc011cpq.1_Silent_p.P259P	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	446	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CTCAGCAGCCCAGTGTTATCC	0.453													19	50					0	0	0.007413	0	0
GHR	2690	broad.mit.edu	37	5	42719193	42719193	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:42719193C>T	uc003jmt.2	+	10	1627	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	GHR_uc011cpq.1_Silent_p.F341F	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	528	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAGAAAACTTCCTTATGGACA	0.498													11	53					0	0	0.010729	0	0
HCN1	348980	broad.mit.edu	37	5	45262042	45262042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:45262042C>T	uc003jok.2	-	8	2679	c.2654G>A	c.(2653-2655)CGA>CAA	p.R885Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	885	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGAAGCAAATCGTGGCTTTTC	0.448													78	231					0	0	0.014410	0	0
HCN1	348980	broad.mit.edu	37	5	45262603	45262603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:45262603G>A	uc003jok.2	-	8	2118	c.2093C>T	c.(2092-2094)TCC>TTC	p.S698F		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	698	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGTGGTGTAGGAGCAGGGTGA	0.627													22	51					0	0	0.014323	0	0
HCN1	348980	broad.mit.edu	37	5	45267263	45267263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:45267263C>T	uc003jok.2	-	7	1736	c.1711G>A	c.(1711-1713)GAG>AAG	p.E571K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	571	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TCCAGGACCTCGTTGAAATTG	0.428													47	124					0	0	0.014410	0	0
HCN1	348980	broad.mit.edu	37	5	45645518	45645518	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:45645518G>A	uc003jok.2	-	2	643	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	206	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGTCCAGGATGATTTCAGAAC	0.378													17	43					0	0	0.028581	0	0
EMB	133418	broad.mit.edu	37	5	49724020	49724020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:49724020C>T	uc003jom.2	-	2	403	c.154G>A	c.(154-156)GCA>ACA	p.A52T	EMB_uc011cpy.1_Missense_Mutation_p.A2T|EMB_uc010ivr.2_Missense_Mutation_p.A52T	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	52	Extracellular (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				AAGTTATTTGCCATTATTTCT	0.318													11	41					0	0	0.010729	0	0
ITGA2	3673	broad.mit.edu	37	5	52344192	52344192	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:52344192G>A	uc003joy.2	+	5	531	c.388_splice	c.e5-1	p.T130_splice	ITGA2_uc011cqa.1_Splice_Site|ITGA2_uc011cqb.1_Splice_Site|ITGA2_uc011cqc.1_Splice_Site_p.T54_splice|ITGA2_uc011cqd.1_Splice_Site|ITGA2_uc011cqe.1_Splice_Site	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor						axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TTTCTTTGAAGACATGTGGTC	0.418													27	28					0	0	0.006320	0	0
CDC20B	166979	broad.mit.edu	37	5	54420789	54420789	+	Missense_Mutation	SNP	G	A	A	rs145386958	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:54420789G>A	uc003jpo.1	-	9	1232	c.1057C>T	c.(1057-1059)CGC>TGC	p.R353C	CDC20B_uc003jpn.1_Missense_Mutation_p.R353C|CDC20B_uc010ivu.1_Missense_Mutation_p.R353C|CDC20B_uc010ivv.1_3'UTR	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	353	WD 4.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			TGCTTGTGGCGAAGTGTTCCA	0.522													49	64					0	0	0.014410	0	0
IL31RA	133396	broad.mit.edu	37	5	55212752	55212752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:55212752C>T	uc003jql.2	+	15	2164	c.2099C>T	c.(2098-2100)TCC>TTC	p.S700F	IL31RA_uc003jqm.2_Intron|IL31RA_uc003jqn.2_Intron|IL31RA_uc003jqo.2_Missense_Mutation_p.S558F	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	668	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				CCCAGAAAATCCCAATACCTA	0.512													28	57					0	0	0.006320	0	0
PDE4D	5144	broad.mit.edu	37	5	59284325	59284325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:59284325C>T	uc003jsb.2	-	3	475	c.262G>A	c.(262-264)GAA>AAA	p.E88K	PDE4D_uc010iwj.1_Missense_Mutation_p.E88K|PDE4D_uc003jse.1_Missense_Mutation_p.E100K	NM_006203	NP_006194	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 2	Error:Variant_position_missing_in_Q08499_after_alignment					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	CCACTGGATTCTGCAGAAGTG	0.443													23	21					0	0	0.014323	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64466461	64466461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:64466461G>A	uc003jtp.2	-	24	4041	c.3227C>T	c.(3226-3228)CCC>CTC	p.P1076L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1076					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ATTAGAAATGGGGGTACTGTC	0.498													39	31					0	0	0.027894	0	0
Unknown	0	broad.mit.edu	37	5	68902970	68902970	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:68902970C>T	uc010ixi.1	+	1		c.45C>T								Homo sapiens cDNA, FLJ18088.																		AGCATTTGTTCTTCAGCCACA	0.398													31	114					0	0	0.014410	0	0
MCCC2	64087	broad.mit.edu	37	5	70952669	70952669	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:70952669C>T	uc003kbs.3	+	17	1812	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	MCCC2_uc003kbt.3_RNA	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	558					leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	AGACTGACTTCGGTATCTTCA	0.423													51	71					0	0	0.014410	0	0
RGNEF	64283	broad.mit.edu	37	5	73187937	73187937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:73187937G>A	uc011csq.1	+	26	3459	c.3448G>A	c.(3448-3450)GAG>AAG	p.E1150K	RGNEF_uc003kcx.2_Missense_Mutation_p.E1150K|RGNEF_uc010izf.2_Missense_Mutation_p.E1150K|RGNEF_uc011csr.1_Missense_Mutation_p.E837K|RGNEF_uc003kcz.3_Missense_Mutation_p.E114K|RGNEF_uc003kda.3_Missense_Mutation_p.E114K	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	1150	PH.				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		TGCTAATGAGGAGAGAGGAAT	0.418													10	7					0	0	0.008291	0	0
PDE8B	8622	broad.mit.edu	37	5	76700600	76700600	+	Silent	SNP	G	A	A	rs146656374		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:76700600G>A	uc003kfa.2	+	12	1311	c.1266G>A	c.(1264-1266)TCG>TCA	p.S422S	PDE8B_uc003kfb.2_Silent_p.S402S|PDE8B_uc003kfc.2_Silent_p.S422S|PDE8B_uc003kfd.2_Silent_p.S375S|PDE8B_uc003kfe.2_Silent_p.S325S	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	422					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		ACGTGAAATCGATATCATCTC	0.358													59	108					0	0	0.014410	0	0
DMGDH	29958	broad.mit.edu	37	5	78325774	78325774	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:78325774C>T	uc003kfs.2	-	11	1773	c.1767G>A	c.(1765-1767)GGG>GGA	p.G589G	DMGDH_uc011cte.1_Silent_p.G439G|DMGDH_uc011ctf.1_Silent_p.G388G|DMGDH_uc011ctg.1_Silent_p.G209G	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	589					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		AAAGAAACTCCCCAGGAGATT	0.363													17	35					0	0	0.004990	0	0
CMYA5	202333	broad.mit.edu	37	5	79054675	79054675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:79054675C>T	uc003kgc.2	+	7	11282	c.11210C>T	c.(11209-11211)TCA>TTA	p.S3737L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3737	Fibronectin type-III 1.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GTCATTGATTCATTTCAGGTT	0.408													31	59					0	0	0.010818	0	0
MTX3	345778	broad.mit.edu	37	5	79284378	79284378	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:79284378G>A	uc010jag.2	-	5	438	c.411C>T	c.(409-411)ATC>ATT	p.I137I	MTX3_uc010jah.2_Silent_p.I137I|MTX3_uc003kge.3_Silent_p.I76I|MTX3_uc003kgf.1_5'Flank	NM_001010891	NP_001010891	Q5HYI7	MTX3_HUMAN	metaxin 3	137					protein targeting to mitochondrion	mitochondrial outer membrane					0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.63e-45)|Epithelial(54;2.9e-40)|all cancers(79;4.68e-35)		TTCCAGGCAGGATCAAACTCA	0.458													9	17					0	0	0.004482	0	0
RASGRF2	5924	broad.mit.edu	37	5	80369074	80369074	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:80369074G>A	uc003kha.1	+	5	690	c.690G>A	c.(688-690)CAG>CAA	p.Q230Q	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Silent_p.Q58Q	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	230	IQ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CCATCGTGCAGGATTACATTT	0.443													29	60					0	0	0.006320	0	0
ACOT12	134526	broad.mit.edu	37	5	80640856	80640856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:80640856C>T	uc003khl.3	-	8	833	c.778G>A	c.(778-780)GAA>AAA	p.E260K	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	260	Acyl coenzyme A hydrolase 2.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		ACTCCAACTTCAACACTGTGA	0.587													23	32					0	0	0.018920	0	0
VCAN	1462	broad.mit.edu	37	5	82837715	82837715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:82837715G>A	uc003kii.3	+	8	9249	c.8893G>A	c.(8893-8895)GAA>AAA	p.E2965K	VCAN_uc003kij.3_Missense_Mutation_p.E1978K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E1629K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2965	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AACTGCCGATGAAATTGAATT	0.468													30	40					0	0	0.008361	0	0
RASA1	5921	broad.mit.edu	37	5	86679577	86679577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:86679577G>A	uc003kiw.2	+	21	2856	c.2738G>A	c.(2737-2739)CGG>CAG	p.R913Q	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Missense_Mutation_p.R736Q|RASA1_uc011ctv.1_Missense_Mutation_p.R746Q|RASA1_uc011ctw.1_Missense_Mutation_p.R747Q|RASA1_uc010jaw.2_Missense_Mutation_p.R735Q	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	913	Ras-GAP.				cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		CTGAATCCACGGATGTTCAAT	0.294													10	15					0	0	0.013537	0	0
GPR98	84059	broad.mit.edu	37	5	89941810	89941810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:89941810C>T	uc003kju.2	+	16	3020	c.2924C>T	c.(2923-2925)ACC>ATC	p.T975I	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	975	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAAGAATTTACCGTTATCCTA	0.338													10	9					0	0	0.008291	0	0
GPR98	84059	broad.mit.edu	37	5	90084058	90084058	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:90084058C>T	uc003kju.2	+	68	13920	c.13824C>T	c.(13822-13824)TTC>TTT	p.F4608F	GPR98_uc003kjt.2_Silent_p.F2314F|GPR98_uc003kjw.2_Silent_p.F269F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4608	Calx-beta 31.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGAGACATTCATTATTAAAC	0.358													13	34					0	0	0.016723	0	0
MCTP1	79772	broad.mit.edu	37	5	94248644	94248644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:94248644C>T	uc003kkx.2	-	9	1388	c.1388G>A	c.(1387-1389)AGA>AAA	p.R463K	MCTP1_uc003kkv.2_Missense_Mutation_p.R242K|MCTP1_uc003kkw.2_Missense_Mutation_p.R196K|MCTP1_uc003kkz.2_Missense_Mutation_p.R124K|MCTP1_uc003kku.2_5'UTR	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	463	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ATGCGATTTTCTGTGTAGGTC	0.438													48	111					0	0	0.014410	0	0
PCSK1	5122	broad.mit.edu	37	5	95728818	95728818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:95728818C>T	uc003kls.1	-	14	2355	c.2149G>A	c.(2149-2151)GAA>AAA	p.E717K	PCSK1_uc010jbi.1_Missense_Mutation_p.E407K	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	717					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGACTGTCTTCAGAGTCTTTA	0.423													67	126					0	0	0.014410	0	0
PCSK1	5122	broad.mit.edu	37	5	95757603	95757603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:95757603C>T	uc003kls.1	-	5	807	c.601G>A	c.(601-603)GAT>AAT	p.D201N		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	201	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTTGTGGGATCATATCGGGGA	0.318													40	83					0	0	0.009718	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102509599	102509599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:102509599C>T	uc003kod.3	+	21	2971	c.2452C>T	c.(2452-2454)CGT>TGT	p.R818C	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.R818C|PPIP5K2_uc003kof.2_Missense_Mutation_p.R119C	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	818					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						ACGTCATGTTCGTACTAGATT	0.333													7	19					0	0	0.008291	0	0
MCC	4163	broad.mit.edu	37	5	112720857	112720857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:112720857C>T	uc003kql.3	-	2	639	c.223G>A	c.(223-225)GAG>AAG	p.E75K	MCC_uc003kqk.3_RNA	NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:Variant_position_missing_in_P23508_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		TTCATGATCTCAGCCACAGAC	0.433													51	66					0	0	0.014410	0	0
SNCAIP	9627	broad.mit.edu	37	5	121758579	121758579	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:121758579G>A	uc003ksw.1	+	4	353	c.147G>A	c.(145-147)TGG>TGA	p.W49*	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Nonsense_Mutation_p.W49*|SNCAIP_uc003ksx.1_Nonsense_Mutation_p.W96*|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Nonsense_Mutation_p.W49*	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	49					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GCTCTAGCTGGAATTGTGGCA	0.413													17	36					0	0	0.006122	0	0
CTXN3	613212	broad.mit.edu	37	5	126993429	126993430	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:126993429_126993430GA>AC	uc003kul.3	+	3	790_791	c.216_217GA>AC	c.(214-219)GAGAAA>GAACAA	p.K73Q	CTXN3_uc003kum.3_Missense_Mutation_p.K73Q	NM_001048252	NP_001041717	Q4LDR2	CTXN3_HUMAN	cortexin 3	73						integral to membrane					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0128)|COAD - Colon adenocarcinoma(49;0.0234)|OV - Ovarian serous cystadenocarcinoma(64;0.038)		AAGGCCTGGAGAAAGGGCAGTT	0.5													16	34					0	0	0.004672	0	0
FBN2	2201	broad.mit.edu	37	5	127610313	127610313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:127610313C>T	uc003kuu.2	-	60	8096	c.7657G>A	c.(7657-7659)GGG>AGG	p.G2553R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2553	EGF-like 43; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAGGTAAACCCCCCCAGGGTG	0.418													27	37					0	0	0.010818	0	0
SLC27A6	28965	broad.mit.edu	37	5	128320946	128320946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:128320946C>T	uc003kuy.2	+	3	998	c.602C>T	c.(601-603)CCT>CTT	p.P201L	SLC27A6_uc003kuz.2_Missense_Mutation_p.P201L	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	201					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGCACCTCACCTGATGAGCCC	0.433													21	31					0	0	0.008871	0	0
SLC22A4	6583	broad.mit.edu	37	5	131647922	131647923	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:131647922_131647923CC>TT	uc003kwq.2	+	2	627_628	c.462_463CC>TT	c.(460-465)CTCCTC>CTTTTC	p.L155F	SLC22A4_uc010jdq.1_RNA|uc003kwr.3_RNA	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	155	Helical; Name=2; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TAGGCGTGCTCCTCGGCTCCTT	0.594													72	86					0	0	0.004672	0	0
FSTL4	23105	broad.mit.edu	37	5	132736599	132736599	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:132736599C>T	uc003kyn.1	-	4	458	c.240G>A	c.(238-240)AGG>AGA	p.R80R		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	80						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCCCTGTCTTCCTGCTGAGCA	0.607													37	43					0	0	0.019004	0	0
CAMLG	819	broad.mit.edu	37	5	134076939	134076939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:134076939C>T	uc003kzt.2	+	2	464	c.359C>T	c.(358-360)CCA>CTA	p.P120L	CAMLG_uc003kzu.2_Intron	NM_001745	NP_001736	P49069	CAMLG_HUMAN	calcium modulating ligand	120	Cytoplasmic (Potential).				defense response	endoplasmic reticulum|integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Cyclosporine(DB00091)	TTCATTAAACCACCTGAGTGC	0.572													41	69					0	0	0.009718	0	0
DDX46	9879	broad.mit.edu	37	5	134102613	134102613	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:134102613C>T	uc003kzw.2	+	3	381	c.213C>T	c.(211-213)TCC>TCT	p.S71S	DDX46_uc003kzv.1_Intron	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	71	Arg-rich.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCAGACGTTCCAGAAGTAGAG	0.478													17	20					0	0	0.006122	0	0
TRPC7	57113	broad.mit.edu	37	5	135602062	135602062	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:135602062G>A	uc003lbn.1	-	4	1191	c.1188C>T	c.(1186-1188)ATC>ATT	p.I396I	TRPC7_uc010jef.1_Silent_p.I333I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I327I|TRPC7_uc010jei.1_Silent_p.I272I|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	397	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATCCCAAGAAGATTGTAAAAG	0.403													22	30					0	0	0.012319	0	0
TRPC7	57113	broad.mit.edu	37	5	135692503	135692503	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:135692503C>G	uc003lbn.1	-	1	573	c.570G>C	c.(568-570)GAG>GAC	p.E190D	TRPC7_uc010jef.1_Missense_Mutation_p.E182D|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E182D|TRPC7_uc010jei.1_Missense_Mutation_p.E182D|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	191	Cytoplasmic (Potential).|ANK 4.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGTGGGGCCGCTCGATGCGGG	0.612													40	83					0	0	0.008740	0	0
TRPC7	57113	broad.mit.edu	37	5	135692631	135692631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:135692631C>T	uc003lbn.1	-	1	445	c.442G>A	c.(442-444)GAC>AAC	p.D148N	TRPC7_uc010jef.1_Missense_Mutation_p.D140N|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.D140N|TRPC7_uc010jei.1_Missense_Mutation_p.D140N|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	149	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TAGAAGTCGTCGTCGCGCAGC	0.647													52	63					0	0	0.014410	0	0
SLC4A9	83697	broad.mit.edu	37	5	139740450	139740450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:139740450C>T	uc003lfm.2	+	2	391	c.356C>T	c.(355-357)CCC>CTC	p.P119L	SLC4A9_uc003lfj.2_Missense_Mutation_p.P95L|SLC4A9_uc011czg.1_Missense_Mutation_p.P95L|SLC4A9_uc003lfl.2_Missense_Mutation_p.P95L|SLC4A9_uc003lfk.2_Missense_Mutation_p.P95L	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGTGCCCCCCACGTGCCC	0.622													16	28					0	0	0.028581	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176493	140176493	+	Silent	SNP	C	T	T	rs140366950		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140176493C>T	uc003lhd.2	+	1	2050	c.1944C>T	c.(1942-1944)CTC>CTT	p.L648L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L648L|PCDHA2_uc011czy.1_Silent_p.L648L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	648	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCCTACTCGTGCTGGTGA	0.652													46	79					0	0	0.014410	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182649	140182649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140182649C>T	uc003lhf.2	+	1	1867	c.1867C>T	c.(1867-1869)CGC>TGC	p.R623C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.R623C	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	623	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCCGTTTCGCGTGGGGCT	0.662													48	74					0	0	0.014410	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230393	140230393	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140230393C>T	uc003lhu.2	+	1	3037	c.2313C>T	c.(2311-2313)GCC>GCT	p.A771A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.A771A	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	771	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTCATGGCCTTCAGCCCGG	0.577													66	44					0	0	0.014410	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263676	140263676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140263676C>T	uc003lif.2	+	1	1823	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.S608L|PCDHA13_uc003lid.2_Missense_Mutation_p.S608L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAATTG	0.682													74	126					0	0	0.014410	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347685	140347685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140347685G>A	uc003lii.2	+	1	1574	c.1334G>A	c.(1333-1335)GGA>GAA	p.G445E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.G445E	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	445	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAGATGGGGGAATACCGCAG	0.527													72	134					0	0	0.014410	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475497	140475497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140475497C>T	uc003lil.2	+	1	1261	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	PCDHB2_uc003lim.1_Missense_Mutation_p.P36S	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	375	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTTTCAGATCCTGACTCCGG	0.433													27	39					0	0	0.021523	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482603	140482603	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140482603G>A	uc003lio.2	+	1	2370	c.2370G>A	c.(2368-2370)AGG>AGA	p.R790R	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	790	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAGTTTCAGGAAGAGCTTTG	0.453													42	107					0	0	0.014410	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502889	140502889	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140502889A>C	uc003lip.1	+	1	1309	c.1309A>C	c.(1309-1311)ACC>CCC	p.T437P		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	437	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCAGAACATAACCGTGCAGGT	0.592													80	123					0	0	0.014410	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515737	140515737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140515737G>A	uc003liq.2	+	1	938	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	241	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAACGCCCCCGAATTTTTACA	0.517													183	287					0	0	0.014410	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552747	140552747	+	Missense_Mutation	SNP	G	A	A	rs76427364		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140552747G>A	uc003lit.2	+	1	505	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	111	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTGTTATTGGAAAAACCTTT	0.433													70	88					0	0	0.014410	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553172	140553172	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140553172C>T	uc003lit.2	+	1	930	c.756C>T	c.(754-756)CCC>CCT	p.P252P		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	252	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGTGCCCGAAAATAGCC	0.522													53	82					0	0	0.014410	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554679	140554679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140554679G>A	uc003lit.2	+	1	2437	c.2263G>A	c.(2263-2265)GGA>AGA	p.G755R	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	755	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGCCTGACTGGAGGCTCCGG	0.562													69	419					0	0	0.014410	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558177	140558177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140558177G>A	uc011dai.1	+	1	748	c.562G>A	c.(562-564)GAT>AAT	p.D188N	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	188	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAAACGCAGTGATGGCAGGAA	0.493													36	236					0	0	0.009718	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564245	140564245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140564245C>T	uc003liv.2	+	1	3266	c.2111C>T	c.(2110-2112)TCG>TTG	p.S704L	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	704	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTTTCGGTGCTCCTG	0.697													108	165					0	0	0.014410	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572734	140572734	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140572734G>A	uc003lix.2	+	1	783	c.609G>A	c.(607-609)GAG>GAA	p.E203E		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	203	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGATCGGGAGGAGCAGGGAG	0.512													109	190					0	0	0.014410	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589169	140589169	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140589169G>A	uc003liz.2	+	1	879	c.690G>A	c.(688-690)GTG>GTA	p.V230V	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	230	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTCAGGGTGGTGGTTGTAG	0.532													76	104					0	0	0.014410	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589279	140589279	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140589279G>A	uc003liz.2	+	1	989	c.800G>A	c.(799-801)TGG>TAG	p.W267*	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	267	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTCTCAGCCTGGGATTTAGAC	0.428													107	214					0	0	0.014410	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594140	140594140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140594140C>T	uc003lja.1	+	1	632	c.445C>T	c.(445-447)CCT>TCT	p.P149S		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	149	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCAGTCCTCCTGGGACTAC	0.423													74	115					0	0	0.014410	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594835	140594835	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140594835G>A	uc003lja.1	+	1	1327	c.1140G>A	c.(1138-1140)GGG>GGA	p.G380G		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	380	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAAAATGGGAAAATTAGTT	0.448													121	145					0	0	0.014410	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626826	140626826	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140626826C>T	uc003lje.2	+	1	1680	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	560	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGCTGTACC	0.721													37	49					0	0	0.014410	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711128	140711128	+	Missense_Mutation	SNP	C	T	T	rs145926133		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140711128C>T	uc003lji.1	+	1	877	c.877C>T	c.(877-879)CGT>TGT	p.R293C	PCDHGA1_uc011dan.1_Missense_Mutation_p.R293C	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	293	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAATATTTCGTTTAGATTC	0.428													40	51					0	0	0.025465	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720281	140720281	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140720281C>T	uc003ljk.1	+	1	1928	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.S581S	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	581	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCCGCTCCGCAGAGCCCG	0.662													99	149					0	0	0.014410	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140734935	140734935	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140734935C>T	uc003ljq.1	+	1	168	c.168C>T	c.(166-168)CCC>CCT	p.P56P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.P56P	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	56	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTGGCGCCCCGGGAGCTGG	0.637													54	91					0	0	0.014410	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140783933	140783933	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140783933T>C	uc003lkh.1	+	1	1414	c.1414T>C	c.(1414-1416)TTC>CTC	p.F472L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.F472L	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	472	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACTTCCATCTTCTCCGTGAT	0.478													50	60					0	0	0.014410	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140866990	140866990	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:140866990C>T	uc003lky.1	+	1	2250	c.2250C>T	c.(2248-2250)CTC>CTT	p.L750L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.L750L|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	750	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGGGATCCTCCGAATCCAGC	0.572													29	60					0	0	0.006320	0	0
ARAP3	64411	broad.mit.edu	37	5	141051140	141051140	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:141051140G>A	uc003llm.2	-	12	1929	c.1851C>T	c.(1849-1851)CTC>CTT	p.L617L	ARAP3_uc011dbe.1_Silent_p.L279L|ARAP3_uc003lln.2_Silent_p.L539L	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	617					cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CTCCTACCTGGAGAAGCTGGC	0.592													28	43					0	0	0.008361	0	0
PCDH1	5097	broad.mit.edu	37	5	141233788	141233788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:141233788C>T	uc003llp.2	-	5	3650	c.3533G>A	c.(3532-3534)CGG>CAG	p.R1178Q		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TTTGGTGTTCCGGTCTTCCGG	0.652													13	13					0	0	0.013537	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252327	145252327	+	Missense_Mutation	SNP	C	T	T	rs447402		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:145252327C>T	uc003lns.1	-	1	205	c.205G>A	c.(205-207)GAA>AAA	p.E69K		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	69											0						CTGGGGACTTCCCCAGACCCA	0.527													24	45					0	0	0.018920	0	0
SPINK6	404203	broad.mit.edu	37	5	147582695	147582695	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:147582695G>A	uc003lpa.2	+	1	292	c.36G>A	c.(34-36)CTG>CTA	p.L12L		NM_205841	NP_995313	Q6UWN8	ISK6_HUMAN	serine protease inhibitor, Kazal type 6	12						extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTCTCTCTGGCTCTTTTCT	0.363													16	51					0	0	0.010504	0	0
CSF1R	1436	broad.mit.edu	37	5	149460515	149460515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:149460515C>T	uc003lrl.2	-	2	317	c.122G>A	c.(121-123)CGA>CAA	p.R41Q	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.R41Q|CSF1R_uc011dce.1_Missense_Mutation_p.R41Q|CSF1R_uc011dcf.1_Missense_Mutation_p.R41Q	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	41	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GCCCACACATCGCAAGGTCAC	0.597													20	25					0	0	0.008871	0	0
TCOF1	6949	broad.mit.edu	37	5	149775884	149775884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:149775884C>T	uc003lry.2	+	24	3929	c.3821C>T	c.(3820-3822)TCC>TTC	p.S1274F	TCOF1_uc011dch.1_Missense_Mutation_p.S1237F|TCOF1_uc003lrz.2_Missense_Mutation_p.S1236F|TCOF1_uc003lrx.2_Missense_Mutation_p.S1198F|TCOF1_uc003lsa.2_Missense_Mutation_p.S1197F	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	1274					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTCAGAAGTCCCGGAAGCCC	0.582													50	80					0	0	0.014410	0	0
G3BP1	10146	broad.mit.edu	37	5	151179453	151179453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:151179453C>T	uc003lun.2	+	9	1018	c.847C>T	c.(847-849)CGT>TGT	p.R283C	G3BP1_uc003lum.2_Missense_Mutation_p.R283C|G3BP1_uc011dcu.1_Missense_Mutation_p.R101C|G3BP1_uc010jhz.2_Missense_Mutation_p.R101C|G3BP1_uc003luq.2_Intron	NM_005754	NP_005745	Q13283	G3BP1_HUMAN	Ras-GTPase-activating protein SH3-domain-binding	283					Ras protein signal transduction|transport	cytosol|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|endonuclease activity|protein binding|RNA binding			skin(3)|ovary(1)	4		all_hematologic(541;0.0338)|Medulloblastoma(196;0.091)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)			TTTTCAGCCCCGTCCAGAGTC	0.388													17	20					0	0	0.004990	0	0
GEMIN5	25929	broad.mit.edu	37	5	154270981	154270981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:154270981G>A	uc003lvx.3	-	26	4165	c.4082C>T	c.(4081-4083)TCA>TTA	p.S1361L	GEMIN5_uc011ddk.1_Missense_Mutation_p.S1360L	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1361					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ATGCTTTTCTGAAAAGAGCTC	0.458													61	92					0	0	0.014410	0	0
GEMIN5	25929	broad.mit.edu	37	5	154296622	154296622	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:154296622G>A	uc003lvx.3	-	13	1874	c.1791C>T	c.(1789-1791)AGC>AGT	p.S597S	GEMIN5_uc011ddk.1_Silent_p.S596S	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	597	WD 11.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCATCAGATAGCTCAATTCTG	0.453													58	101					0	0	0.014410	0	0
KIF4B	285643	broad.mit.edu	37	5	154395876	154395876	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:154395876G>A	uc010jih.1	+	1	2617	c.2457G>A	c.(2455-2457)CAG>CAA	p.Q819Q		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	819	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TTACAAAACAGATTGAAAGCC	0.443													19	31					0	0	0.007413	0	0
TIMD4	91937	broad.mit.edu	37	5	156381661	156381661	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:156381661C>T	uc003lwh.2	-	2	222	c.165G>A	c.(163-165)GGG>GGA	p.G55G	TIMD4_uc010jii.2_Silent_p.G55G	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	55	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTGGTCTTTCCCCCAGCACA	0.532													58	85					0	0	0.014410	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899650	156899650	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:156899650C>G	uc003lwx.3	+	6	1199	c.1083C>G	c.(1081-1083)TAC>TAG	p.Y361*	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Nonsense_Mutation_p.Y342*	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	361	Helical; (Potential).					integral to membrane	receptor activity				0						CCATCTACTACGTGTTCTTCA	0.537											OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	75					0	0	0.027894	0	0
ADAM19	8728	broad.mit.edu	37	5	156915375	156915375	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:156915375C>T	uc003lwz.2	-	21	2512	c.2448G>A	c.(2446-2448)AGG>AGA	p.R816R	ADAM19_uc003lww.1_Silent_p.R549R|ADAM19_uc003lwy.2_Silent_p.R415R|ADAM19_uc011ddr.1_Silent_p.R747R	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	816	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGGGGAGTTCCTAGCAGCCC	0.652													59	80					0	0	0.014410	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776622	159776622	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:159776622G>A	uc003lyd.2	-	3	550	c.546C>T	c.(544-546)CTC>CTT	p.L182L		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	137	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGGGCCTGGGAGGCCTGGCT	0.662													111	173					0	0	0.014410	0	0
ATP10B	23120	broad.mit.edu	37	5	160039886	160039886	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:160039886C>T	uc003lym.1	-	18	3547	c.2700G>A	c.(2698-2700)ACG>ACA	p.T900T	ATP10B_uc010jit.1_Silent_p.T217T|ATP10B_uc003lyn.2_Silent_p.T458T	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	900	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGTGGCAATCGTATCTGGAA	0.507													15	22					0	0	0.028581	0	0
GABRB2	2561	broad.mit.edu	37	5	160886667	160886667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:160886667G>A	uc003lys.1	-	5	639	c.421C>T	c.(421-423)CGC>TGC	p.R141C	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Missense_Mutation_p.R141C|GABRB2_uc003lyt.1_Missense_Mutation_p.R141C|GABRB2_uc010jiu.1_Missense_Mutation_p.R78C|GABRB2_uc011dei.1_Missense_Mutation_p.R141C	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	141	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGATGCAGGCGAATCATGCGG	0.448													8	33					0	0	0.004482	0	0
GABRA6	2559	broad.mit.edu	37	5	161116026	161116026	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:161116026G>A	uc003lyu.2	+	4	635	c.297G>A	c.(295-297)GAG>GAA	p.E99E	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	99	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGCCAACTGAGATTCTGAGTC	0.413										TCGA Ovarian(5;0.080)			42	63					0	0	0.014410	0	0
WWC1	23286	broad.mit.edu	37	5	167850906	167850906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:167850906C>T	uc003lzu.2	+	11	1736	c.1643C>T	c.(1642-1644)TCC>TTC	p.S548F	WWC1_uc003lzv.2_Missense_Mutation_p.S548F|WWC1_uc011den.1_Missense_Mutation_p.S548F|WWC1_uc003lzw.2_Missense_Mutation_p.S347F	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	548					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		CCACCCTGTTCCCCTCTCATG	0.612													55	78					0	0	0.014410	0	0
SLIT3	6586	broad.mit.edu	37	5	168093669	168093669	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:168093669G>A	uc003mab.2	-	36	4782	c.4362C>T	c.(4360-4362)GTC>GTT	p.V1454V	SLIT3_uc010jjg.2_Silent_p.V1461V	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1454	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCACCTCTCGGACTACTTGTC	0.597													35	66					0	0	0.027894	0	0
RANBP17	64901	broad.mit.edu	37	5	170667965	170667965	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:170667965A>T	uc003mba.2	+	23	2472	c.2456A>T	c.(2455-2457)AAA>ATA	p.K819I	RANBP17_uc003mbb.2_Missense_Mutation_p.K144I|RANBP17_uc003mbd.2_Missense_Mutation_p.K182I|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	819					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGCCTCTCAAAAGATCAGATT	0.418			T	TRD@	ALL								37	77					0	0	0.007835	0	0
NSD1	64324	broad.mit.edu	37	5	176696740	176696740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:176696740C>T	uc003mfr.3	+	16	5579	c.5441C>T	c.(5440-5442)CCT>CTT	p.P1814L	NSD1_uc003mft.3_Missense_Mutation_p.P1545L|NSD1_uc003mfs.1_Missense_Mutation_p.P1711L|NSD1_uc011dfx.1_Missense_Mutation_p.P1462L	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1814	PWWP 2.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CGAGTCTTCCCTTACATGGAG	0.443			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			46	70					0	0	0.014410	0	0
GRM6	2916	broad.mit.edu	37	5	178413173	178413174	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:178413173_178413174GG>TA	uc003mjr.2	-	8	2260_2261	c.2081_2082CC>TA	c.(2080-2082)CCC>CTA	p.P694L	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.P277L|GRM6_uc003mjs.1_Missense_Mutation_p.P314L	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	694	Cytoplasmic (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCTGTGAGGTGGGGCTGATGAA	0.624													12	21					0	0	0.004672	0	0
MAML1	9794	broad.mit.edu	37	5	179201462	179201462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:179201462C>T	uc003mkm.2	+	5	2898	c.2635C>T	c.(2635-2637)CCG>TCG	p.P879S	MAML1_uc003mkn.1_Intron	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	879					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AATGTCTAGCCCGCAATTCTC	0.612													22	45					0	0	0.014323	0	0
BTNL3	10917	broad.mit.edu	37	5	180420152	180420152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:180420152G>A	uc003mmr.2	+	2	517	c.389G>A	c.(388-390)CGG>CAG	p.R130Q		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	130	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			TGGGAGCTGCGGGTGGCAGGT	0.443													4	9					0	0	0.014758	0	0
BTNL3	10917	broad.mit.edu	37	5	180432727	180432727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr5:180432727C>T	uc003mmr.2	+	8	1384	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	BTNL3_uc010jlp.2_Missense_Mutation_p.S204F	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	419	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GGGACCATCTCCTTCTTCAAT	0.478													25	48					0	0	0.027356	0	0
DSP	1832	broad.mit.edu	37	6	7572293	7572293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:7572293G>A	uc003mxp.1	+	15	2401	c.2122G>A	c.(2122-2124)GAG>AAG	p.E708K	DSP_uc003mxq.1_Missense_Mutation_p.E708K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	708	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAAAATTAACGAGCTTAAGGT	0.408													14	40					0	0	0.024245	0	0
DSP	1832	broad.mit.edu	37	6	7581158	7581158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:7581158C>T	uc003mxp.1	+	23	5014	c.4735C>T	c.(4735-4737)CGG>TGG	p.R1579W	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1579	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGAGCTGAATCGGCTGAAGAG	0.542													26	71					0	0	0.021523	0	0
DSP	1832	broad.mit.edu	37	6	7585285	7585285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:7585285C>T	uc003mxp.1	+	24	8069	c.7790C>T	c.(7789-7791)TCC>TTC	p.S2597F	DSP_uc003mxq.1_Missense_Mutation_p.S1998F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2597	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCACCATATCCAGCGTCAGG	0.473													43	135					0	0	0.007835	0	0
HIVEP1	3096	broad.mit.edu	37	6	12164527	12164527	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:12164527C>T	uc003nac.2	+	9	8169	c.7990C>T	c.(7990-7992)CTG>TTG	p.L2664L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2664					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GTCACAACCTCTGCTGAAGGC	0.552													18	41					0	0	0.008871	0	0
DCDC2	51473	broad.mit.edu	37	6	24291289	24291289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:24291289C>T	uc003ndx.2	-	5	877	c.575G>A	c.(574-576)GGA>GAA	p.G192E	DCDC2_uc003ndy.2_Missense_Mutation_p.G192E	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	192	Doublecortin 2.				cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				AACAAGTTTTCCTTCTAAAGT	0.348													27	80					0	0	0.009535	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726745	25726745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:25726745C>T	uc003nfc.2	-	1	46	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	4					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CTGCTTCCCTCGTCCAGACAT	0.522													53	122					0	0	0.014410	0	0
BTN2A1	11120	broad.mit.edu	37	6	26468536	26468536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:26468536G>A	uc003nib.1	+	8	1555	c.1343G>A	c.(1342-1344)TGC>TAC	p.C448Y	BTN2A1_uc003nic.1_3'UTR|BTN2A1_uc003nid.1_Missense_Mutation_p.C296Y|BTN2A1_uc011dko.1_Missense_Mutation_p.C387Y|BTN2A1_uc010jqk.1_Missense_Mutation_p.C208Y	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	448	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						GAGTCCCTTTGCCGGGTGGGC	0.532													37	65					0	0	0.023175	0	0
FKSG83	83954	broad.mit.edu	37	6	27293169	27293169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:27293169G>A	uc010jqt.2	+	1	592	c.108G>A	c.(106-108)ATG>ATA	p.M36I	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	36						integral to membrane	pheromone receptor activity				0						ACCATGCAATGATATTTCAAA	0.353													58	161					0	0	0.014410	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27834936	27834936	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:27834936C>T	uc003njx.2	-	1	424	c.372G>A	c.(370-372)AAG>AAA	p.K124K		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	124					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						CGCCTGCCTTCTTGGCTTTGG	0.597													119	325					0	0	0.014410	0	0
LOC222699	222699	broad.mit.edu	37	6	28185435	28185435	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28185435C>T	uc011dla.1	-	1		c.1273G>A				NR_002936				Homo sapiens pp14762 mRNA, complete cds.												0						TTGGCCAGCACCACGGACTGG	0.458													4	14					0	0	0.009096	0	0
PGBD1	84547	broad.mit.edu	37	6	28251876	28251876	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28251876C>T	uc003nky.2	+	2	656	c.286C>T	c.(286-288)CTG>TTG	p.L96L	PGBD1_uc003nkz.2_Silent_p.L96L	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	96	SCAN box.				viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						CCTGACCATCCTGCCCAAGGA	0.542													51	133					0	0	0.014410	0	0
SCAND3	114821	broad.mit.edu	37	6	28540518	28540518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28540518G>A	uc003nlo.2	-	4	3766	c.3148C>T	c.(3148-3150)CAT>TAT	p.H1050Y		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1050					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						agttgcttatgatcagcttcc	0													18	70					0	0	0.012319	0	0
SCAND3	114821	broad.mit.edu	37	6	28541528	28541528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28541528C>T	uc003nlo.2	-	4	2756	c.2138G>A	c.(2137-2139)AGA>AAA	p.R713K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	713					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gttaacatttcttttattact	0													8	17					0	0	0.003080	0	0
SCAND3	114821	broad.mit.edu	37	6	28542523	28542523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28542523C>T	uc003nlo.2	-	3	2577	c.1959G>A	c.(1957-1959)ATG>ATA	p.M653I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	653					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTTCCTCTTCATTGTGCTGG	0.433													45	83					0	0	0.011902	0	0
SCAND3	114821	broad.mit.edu	37	6	28542960	28542960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:28542960G>A	uc003nlo.2	-	3	2140	c.1522C>T	c.(1522-1524)CAG>TAG	p.Q508*		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	508	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGATAGGGCTGATTTTGGGAC	0.423													40	94					0	0	0.023175	0	0
OR2B3	442184	broad.mit.edu	37	6	29054567	29054567	+	Silent	SNP	G	A	A	rs139179669		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:29054567G>A	uc003nlx.2	-	1	524	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,									p.F153F(1)		skin(1)	1						CTGAGTTGCCGAAACCAATGA	0.488													22	48					0	0	0.014323	0	0
OR5V1	81696	broad.mit.edu	37	6	29323920	29323920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:29323920G>A	uc011dlo.1	-	1	135	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						ATTTAGGTTGGAGAATCCCAA	0.363													22	51					0	0	0.012319	0	0
OR12D3	81797	broad.mit.edu	37	6	29342600	29342600	+	Silent	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:29342600C>A	uc003nme.2	-	1	469	c.465G>T	c.(463-465)CTG>CTT	p.L155L		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						CAGAATGCATCAGAGCGTAAA	0.488													14	49					2.31682e-05	2.345e-05	0.024245	1	0
OR12D3	81797	broad.mit.edu	37	6	29342884	29342884	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:29342884G>A	uc003nme.2	-	1	185	c.181C>T	c.(181-183)CTG>TTG	p.L61L		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						AGGTTTCCCAGAAAAAAATAC	0.398													29	42					0	0	0.006320	0	0
HLA-J	3137	broad.mit.edu	37	6	29976931	29976931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:29976931G>A	uc003rtl.3	+	3	621	c.259G>A	c.(259-261)GAG>AAG	p.E87K	HLA-G_uc011dmb.1_Intron|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						GATAGAAAAGGAGGGAGCTAC	0.547													55	118					0	0	0.014410	0	0
TRIM39	56658	broad.mit.edu	37	6	30308352	30308352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:30308352C>T	uc010jrz.2	+	8	1276	c.964C>T	c.(964-966)CCC>TCC	p.P322S	TRIM39_uc003npz.2_Missense_Mutation_p.P292S|TRIM39_uc003nqb.2_Missense_Mutation_p.P292S|TRIM39_uc003nqc.2_Missense_Mutation_p.P292S|TRIM39_uc010jsa.1_Missense_Mutation_p.P292S	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	322	B30.2/SPRY.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						CAGCAATTTTCCCCGACAGTA	0.413													46	130					0	0	0.014410	0	0
PPP1R10	5514	broad.mit.edu	37	6	30573710	30573710	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:30573710G>A	uc003nqn.1	-	10	1395	c.843C>T	c.(841-843)ATC>ATT	p.I281I	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	281	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GCTGTGGCGGGATGATCTTCA	0.373													231	513					0	0	0.014410	0	0
MDC1	9656	broad.mit.edu	37	6	30676091	30676091	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:30676091G>A	uc003nrg.3	-	8	2705	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Intron	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	755				Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CTCTCAGACAGAATGGCTGTG	0.408								Other_conserved_DNA_damage_response_genes					24	74					0	0	0.018920	0	0
DDR1	780	broad.mit.edu	37	6	30862382	30862383	+	Missense_Mutation	DNP	CC	TT	TT	rs150721017	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:30862382_30862383CC>TT	uc003nrr.2	+	12	1706_1707	c.1447_1448CC>TT	c.(1447-1449)CCG>TTG	p.P483L	DDR1_uc010jse.2_Missense_Mutation_p.P483L|DDR1_uc003nrq.2_Missense_Mutation_p.P483L|DDR1_uc003nrs.2_Missense_Mutation_p.P483L|DDR1_uc003nrt.2_Missense_Mutation_p.P483L|DDR1_uc011dms.1_Missense_Mutation_p.P501L|DDR1_uc003nru.2_Missense_Mutation_p.P483L|DDR1_uc003nrv.2_Missense_Mutation_p.P483L|DDR1_uc003nrw.1_Missense_Mutation_p.R255C|DDR1_uc003nry.1_RNA|DDR1_uc003nrx.1_RNA|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	483	PPxY motif.|Cytoplasmic (Potential).|Gly/Pro-rich.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	AGAGCCACCCCCGTACCAGGAG	0.629													40	151					0	0	0.004672	0	0
CDSN	1041	broad.mit.edu	37	6	31084228	31084228	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31084228C>T	uc003nsm.1	-	2	1191	c.1164G>A	c.(1162-1164)AAG>AAA	p.K388K	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	388	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGCAGGGTCCCTTGGAGCCCG	0.637													6	18					0	0	0.021553	0	0
HLA-B	3106	broad.mit.edu	37	6	31322439	31322439	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31322439C>G	uc003nth.2	-	6	1070	c.1016G>C	c.(1015-1017)GGA>GCA	p.G339A	HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.G218A|HLA-B_uc003nti.1_RNA	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	339	Cytoplasmic (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						CCCTCCTTTTCCACCTGTGGG	0.562									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				37	111					0	0	0.027894	0	0
NCR3	259197	broad.mit.edu	37	6	31557699	31557699	+	Missense_Mutation	SNP	G	A	A	rs34469029		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31557699G>A	uc003nuv.2	-	2	512	c.248C>T	c.(247-249)TCC>TTC	p.S83F	NCR3_uc003nuw.2_Missense_Mutation_p.S83F|NCR3_uc003nux.1_Missense_Mutation_p.S83F	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	83	Ig-like.|Extracellular (Potential).				cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GAGGAAACGGGAAGAAGCAAG	0.617													75	210					0	0	0.014410	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779105	31779105	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31779105A>T	uc003nxh.2	-	2	828	c.645T>A	c.(643-645)GAT>GAA	p.D215E	HSPA1L_uc010jte.2_Missense_Mutation_p.D215E	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	215					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AAATCCCATCATCTATGGTCA	0.483													240	497					0	0	0.014410	0	0
CFB	629	broad.mit.edu	37	6	31919130	31919130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31919130G>A	uc003nyj.3	+	16	2247	c.1969G>A	c.(1969-1971)GAG>AAG	p.E657K	CFB_uc011dor.1_Missense_Mutation_p.E1159K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	657	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						AGGCAGCTGTGAGAGAGATGC	0.532													111	275					0	0	0.014410	0	0
C4A	720	broad.mit.edu	37	6	31997489	31997489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:31997489C>T	uc011dpd.1	+	29	3874	c.3823C>T	c.(3823-3825)CAC>TAC	p.H1275Y	C4A_uc011dpe.1_Missense_Mutation_p.H1275Y	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1275					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						CCTCCTGCTTCACGAGGGCAA	0.672													20	132					0	0	0.015359	0	0
TNXB	7148	broad.mit.edu	37	6	32010301	32010301	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32010301G>A	uc003nzl.2	-	40	12337	c.12135C>T	c.(12133-12135)TTC>TTT	p.F4045F	TNXB_uc003nzg.1_Silent_p.F476F|TNXB_uc003nzh.1_Silent_p.F514F	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4092	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGCCGTTGAGGAAGATGGTGC	0.662													62	205					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32030250	32030250	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32030250C>T	uc003nzl.2	-	20	7054	c.6852G>A	c.(6850-6852)AAG>AAA	p.K2284K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TTTCTTCATCCTTTCCTGGGG	0.582													85	267					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32035464	32035464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32035464C>T	uc003nzl.2	-	18	6720	c.6518G>A	c.(6517-6519)GGC>GAC	p.G2173D		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2245	Fibronectin type-III 14.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGACACTGGGCCCACGCGCCG	0.647													58	211					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32035616	32035616	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32035616G>A	uc003nzl.2	-	18	6568	c.6366C>T	c.(6364-6366)TTC>TTT	p.F2122F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2194	Fibronectin type-III 14.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGAAGGAGTCGAAGCGGCCCT	0.692													133	370					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32039805	32039805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32039805C>T	uc003nzl.2	-	13	5154	c.4952G>A	c.(4951-4953)GGG>GAG	p.G1651E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1733	Fibronectin type-III 9.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGTCGTTTCCCATCCTGGAT	0.612													54	129					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32052275	32052275	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32052275C>T	uc003nzl.2	-	8	3562	c.3360G>A	c.(3358-3360)CTG>CTA	p.L1120L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1207	Fibronectin type-III 4.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCAGGATCCAGGGAGGTGA	0.582													198	486					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32053761	32053761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32053761C>T	uc003nzl.2	-	7	3116	c.2914G>A	c.(2914-2916)GAT>AAT	p.D972N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1059	Fibronectin type-III 3.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGTCTCATCTCTGCCCAGC	0.687													101	232					0	0	0.014410	0	0
BTNL2	56244	broad.mit.edu	37	6	32372842	32372842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32372842C>T	uc003obg.1	-	2	301	c.301G>A	c.(301-303)GGC>AGC	p.G101S	BTNL2_uc010jty.1_Intron|BTNL2_uc010jtz.1_Intron|BTNL2_uc010jua.1_Intron	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	101	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TTTGCAATGCCATTCTCTATC	0.517													93	244					0	0	0.014410	0	0
HLA-DQB2	3120	broad.mit.edu	37	6	32726755	32726755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32726755G>A	uc003oby.3	-	3	601	c.518C>T	c.(517-519)TCC>TTC	p.S173F	HLA-DQB2_uc003obz.2_Missense_Mutation_p.S173F	NR_003937		Q5SR06	Q5SR06_HUMAN	SubName: Full=Major histocompatibility complex, class II, DQ beta 2; SubName: Full=Putative uncharacterized protein ENSP00000372579;	173					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	integral to membrane|MHC class II protein complex					0						CCTAATGAGGGAGGTGGACAC	0.547													40	82					0	0	0.009718	0	0
TAP1	6890	broad.mit.edu	37	6	32815348	32815348	+	Silent	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:32815348A>T	uc003ocg.2	-	9	2180	c.2025T>A	c.(2023-2025)GCT>GCA	p.A675A	PSMB8_uc003ocf.2_5'Flank|TAP1_uc011dqi.1_Silent_p.A414A	NM_000593	NP_000584	Q03518	TAP1_HUMAN	transporter 1, ATP-binding cassette, sub-family	675	Cytoplasmic (Potential).|ABC transporter.				antigen processing and presentation of endogenous peptide antigen via MHC class I|cytosol to ER transport|intracellular transport of viral proteins in host cell|positive regulation of T cell mediated cytotoxicity	cytosol|plasma membrane|TAP complex	ADP binding|ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			skin(1)	1						ACTTTACTGCAGCAGCTGTGA	0.498													50	134					0	0	0.014410	0	0
HSD17B8	7923	broad.mit.edu	37	6	33173925	33173925	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:33173925C>T	uc003odi.1	+	7	693	c.666C>T	c.(664-666)ATC>ATT	p.I222I	uc003odj.1_5'Flank|MIR219-1_hsa-mir-219-1|MI0000296_5'Flank|RING1_uc011dqw.1_5'Flank|RING1_uc011dqx.1_5'Flank|RING1_uc003odk.2_5'Flank	NM_014234	NP_055049	Q92506	DHB8_HUMAN	estradiol 17 beta-dehydrogenase 8	222					estrogen biosynthetic process|fatty acid biosynthetic process	mitochondrial matrix	3-hydroxyacyl-CoA dehydrogenase activity|estradiol 17-beta-dehydrogenase activity|protein binding|testosterone 17-beta-dehydrogenase (NAD+) activity			breast(1)|central_nervous_system(1)	2					NADH(DB00157)	CTGAAATGATCCCGATGGGAC	0.458													34	104					0	0	0.021022	0	0
VPS52	6293	broad.mit.edu	37	6	33231635	33231636	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:33231635_33231636GG>AA	uc003odm.1	-	16	1851_1852	c.1641_1642CC>TT	c.(1639-1644)GTCCTC>GTTTTC	p.L548F	VPS52_uc003odn.1_Missense_Mutation_p.L359F	NM_022553	NP_072047	Q8N1B4	VPS52_HUMAN	vacuolar protein sorting 52	548					protein transport	endosome membrane|Golgi apparatus				ovary(4)|skin(1)	5						GCCACTCGGAGGACAAAATTCT	0.53													27	69					0	0	0.004672	0	0
PHF1	5252	broad.mit.edu	37	6	33383033	33383033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:33383033C>T	uc003oeh.2	+	13	1497	c.1261C>T	c.(1261-1263)CCC>TCC	p.P421S	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Intron|PHF1_uc010jux.2_Missense_Mutation_p.P221S	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	421					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				TCCACCATCCCCCAGCCCTAA	0.622													119	266					0	0	0.014410	0	0
IP6K3	117283	broad.mit.edu	37	6	33694681	33694681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:33694681G>A	uc010jvf.2	-	5	952	c.416C>T	c.(415-417)CCG>CTG	p.P139L	IP6K3_uc003ofb.2_Missense_Mutation_p.P139L	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	139					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						AGCCTTGGCCGGGCTGCGGCG	0.627													54	136					0	0	0.014410	0	0
SNRPC	6631	broad.mit.edu	37	6	34738119	34738120	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:34738119_34738120CC>TT	uc003ojt.1	+	5	317_318	c.302_303CC>TT	c.(301-303)CCC>CTT	p.P101L		NM_003093	NP_003084	P09234	RU1C_HUMAN	small nuclear ribonucleoprotein polypeptide C	101				P -> S (in Ref. 2).	spliceosomal snRNP assembly	Cajal body|U1 snRNP	protein homodimerization activity|single-stranded RNA binding|zinc ion binding			pancreas(1)	1						GGGGGCCCTCCCATGATGCCAA	0.5													34	97					0	0	0.004672	0	0
SRPK1	6732	broad.mit.edu	37	6	35856695	35856695	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:35856695A>G	uc003olj.2	-	4	322	c.199T>C	c.(199-201)TAT>CAT	p.Y67H	SRPK1_uc011dtg.1_Missense_Mutation_p.Y51H|SRPK1_uc003olh.2_5'UTR|SRPK1_uc003oli.2_5'UTR	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1	67					cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						ACAAGATGATAACCTCCTGGA	0.363													61	142					0	0	0.014410	0	0
SLC26A8	116369	broad.mit.edu	37	6	35945086	35945086	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:35945086C>T	uc003olm.2	-	9	1179	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	SLC26A8_uc003oln.2_Silent_p.K356K|SLC26A8_uc003oll.2_Silent_p.K251K	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	356	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GTAAAATTATCTTGGGAAGAA	0.413													39	126					0	0	0.009718	0	0
BRPF3	27154	broad.mit.edu	37	6	36179135	36179135	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:36179135C>T	uc003olv.3	+	7	2504	c.2280C>T	c.(2278-2280)TCC>TCT	p.S760S	BRPF3_uc010jwb.2_Intron|BRPF3_uc011dtj.1_Intron|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Intron	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	760					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCATGCGGTCCAGTGGGGCCC	0.632													20	66					0	0	0.008871	0	0
C6orf222	389384	broad.mit.edu	37	6	36298396	36298396	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:36298396G>A	uc003oly.2	-	2	250	c.72C>T	c.(70-72)GCC>GCT	p.A24A		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	24										skin(2)|ovary(1)|breast(1)	4						CTTTCCCGGGGGCCTGCGGCC	0.642													50	139					0	0	0.014410	0	0
STK38	11329	broad.mit.edu	37	6	36483160	36483160	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:36483160G>A	uc003omg.2	-	6	1212	c.624C>T	c.(622-624)TTC>TTT	p.F208F	STK38_uc003omh.2_Silent_p.F208F|STK38_uc003omi.2_Silent_p.F208F	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	208	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						CTCTGTGGATGAATCCAAGTT	0.428													50	103					0	0	0.014410	0	0
FGD2	221472	broad.mit.edu	37	6	36990057	36990057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:36990057C>T	uc010jwp.1	+	13	1540	c.1369C>T	c.(1369-1371)CGG>TGG	p.R457W	FGD2_uc003ong.2_Missense_Mutation_p.R179W|FGD2_uc011dtv.1_Missense_Mutation_p.R85W|FGD2_uc003onj.1_Missense_Mutation_p.R34W	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	457					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GCAGTGGGTCCGGGACAAGAT	0.652											OREG0017395	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	28					0	0	0.004482	0	0
TBC1D22B	55633	broad.mit.edu	37	6	37252230	37252230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:37252230C>T	uc003onn.2	+	6	937	c.791C>T	c.(790-792)ACC>ATC	p.T264I	TBC1D22B_uc010jwt.2_RNA	NM_017772	NP_060242	Q9NU19	TB22B_HUMAN	TBC1 domain family, member 22B	264	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0			OV - Ovarian serous cystadenocarcinoma(102;0.241)			CACCAGGATACCTACAGACAG	0.478													42	74					0	0	0.008740	0	0
MDGA1	266727	broad.mit.edu	37	6	37606422	37606422	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:37606422C>G	uc003onu.1	-	15	3737	c.2558G>C	c.(2557-2559)CGG>CCG	p.R853P	MDGA1_uc003onv.1_Missense_Mutation_p.R122P	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	853	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						GTTCCGGGACCGCACCAGGAG	0.617													8	31					0	0	0.003080	0	0
DNAH8	1769	broad.mit.edu	37	6	38704843	38704843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:38704843G>A	uc003ooe.1	+	4	712	c.112G>A	c.(112-114)GAA>AAA	p.E38K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACCCTTTCAGGAAGCGCTCTT	0.343													25	77					0	0	0.018920	0	0
DNAH8	1769	broad.mit.edu	37	6	38834547	38834547	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:38834547C>T	uc003ooe.1	+	45	6537	c.5937C>T	c.(5935-5937)ATC>ATT	p.I1979I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATTTTCAGATCATTATGAGAG	0.299													16	49					0	0	0.028581	0	0
DNAH8	1769	broad.mit.edu	37	6	38862615	38862615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:38862615G>A	uc003ooe.1	+	57	8671	c.8071G>A	c.(8071-8073)GAG>AAG	p.E2691K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTCAAACACGAGTGCAGCAG	0.403													13	28					0	0	0.016723	0	0
DNAH8	1769	broad.mit.edu	37	6	38941544	38941544	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:38941544G>A	uc003ooe.1	+	82	12582	c.11982G>A	c.(11980-11982)TGG>TGA	p.W3994*	DNAH8_uc003oog.1_Nonsense_Mutation_p.W443*	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCCGAGTATGGATAACTACGG	0.393													15	56					0	0	0.028581	0	0
DNAH8	1769	broad.mit.edu	37	6	38980315	38980315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:38980315G>A	uc003ooe.1	+	89	13565	c.12965G>A	c.(12964-12966)TGG>TAG	p.W4322*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTGGGCTTCTGGTTCACTGAA	0.443													71	133					0	0	0.014410	0	0
KCNK5	8645	broad.mit.edu	37	6	39158965	39158965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:39158965C>T	uc003oon.2	-	5	1565	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	401					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGCTCGCATTCCTCGCTGATG	0.627													30	84					0	0	0.012213	0	0
KCNK5	8645	broad.mit.edu	37	6	39159100	39159100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:39159100C>T	uc003oon.2	-	5	1430	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	356					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GACACCTCTTCCAAGGTGGGC	0.667													28	85					0	0	0.027356	0	0
KCNK5	8645	broad.mit.edu	37	6	39159357	39159357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:39159357G>A	uc003oon.2	-	5	1173	c.809C>T	c.(808-810)TCC>TTC	p.S270F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	270	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGAGTGTGGGGAGCTCTCAAA	0.547													96	233					0	0	0.014410	0	0
LRFN2	57497	broad.mit.edu	37	6	40400046	40400046	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:40400046C>T	uc003oph.1	-	2	1272	c.807G>A	c.(805-807)GGG>GGA	p.G269G		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	269	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTTGAGGCCCCCTGGGGAGC	0.587													30	64					0	0	0.006320	0	0
LRFN2	57497	broad.mit.edu	37	6	40400412	40400412	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:40400412G>A	uc003oph.1	-	2	906	c.441C>T	c.(439-441)TTC>TTT	p.F147F		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	147	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					ATGTCAGCAGGAAGTCCTCAA	0.607													28	92					0	0	0.006320	0	0
TREML4	285852	broad.mit.edu	37	6	41204270	41204270	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:41204270C>T	uc003oqc.2	+	5	657	c.553C>T	c.(553-555)CTG>TTG	p.L185L	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	185						extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CCCCAGATTCCTGGTCTTGGT	0.592													35	68					0	0	0.007835	0	0
USP49	25862	broad.mit.edu	37	6	41774066	41774066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:41774066G>A	uc003ori.2	-	4	878	c.656C>T	c.(655-657)GCG>GTG	p.A219V		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	219					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			agccgggcccgcgtcgcgggg	0.572													9	24					0	0	0.004482	0	0
GUCA1A	2978	broad.mit.edu	37	6	42141371	42141371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:42141371G>A	uc003orx.2	+	3	665	c.20G>A	c.(19-21)GGA>GAA	p.G7E	GUCA1A_uc011duo.1_RNA|GUCA1A_uc010jxt.2_Missense_Mutation_p.G7E	NM_000409	NP_000400	P43080	GUC1A_HUMAN	guanylate cyclase activator 1A (retina)	7					signal transduction|visual perception	membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity				0	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;5.54e-05)|Epithelial(12;0.000167)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GTGATGGAGGGAAAGTCAGTG	0.592													26	103					0	0	0.027356	0	0
KIAA0240	23506	broad.mit.edu	37	6	42819858	42819858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:42819858C>T	uc003osn.1	+	7	2019	c.1868C>T	c.(1867-1869)TCC>TTC	p.S623F	KIAA0240_uc003osm.1_Missense_Mutation_p.S623F|KIAA0240_uc011duw.1_Missense_Mutation_p.S623F|KIAA0240_uc003osp.1_Missense_Mutation_p.S623F	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	623										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			AATCAGACTTCCCCCATTTCT	0.438													14	60					0	0	0.024245	0	0
TTBK1	84630	broad.mit.edu	37	6	43251412	43251412	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:43251412C>T	uc003ouq.1	+	14	3213	c.2934C>T	c.(2932-2934)CCC>CCT	p.P978P		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	978						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCCGAGCGCCCCTGGAGAACG	0.687													26	71					0	0	0.024334	0	0
CAPN11	11131	broad.mit.edu	37	6	44149024	44149024	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:44149024C>T	uc003owt.1	+	19	1943	c.1905C>T	c.(1903-1905)TTC>TTT	p.F635F	CAPN11_uc011dvn.1_Silent_p.F289F	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	635	EF-hand 1.|Domain IV.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TTCTAGAGTTCAAGATCCTGT	0.512													25	85					0	0	0.006320	0	0
TCTE1	202500	broad.mit.edu	37	6	44254128	44254128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:44254128G>A	uc003oxi.2	-	3	575	c.419C>T	c.(418-420)CCC>CTC	p.P140L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	140										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GTGGCACACGGGCCAGCGATG	0.597													49	139					0	0	0.014410	0	0
CLIC5	53405	broad.mit.edu	37	6	45870832	45870832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:45870832C>T	uc003oxv.3	-	6	1332	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q	CLIC5_uc003oxu.3_Missense_Mutation_p.R250Q	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	409					female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						TGCTCAGGATCGGCTGAGGCG	0.552													26	84					0	0	0.008361	0	0
GPR111	222611	broad.mit.edu	37	6	47650193	47650193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:47650193C>T	uc010jzj.1	+	6	1899	c.1898C>T	c.(1897-1899)GCC>GTC	p.A633V	GPR111_uc010jzk.1_Missense_Mutation_p.A565V|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	633	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CAGCGAGCTGCCATTGGCAAT	0.522													12	34					0	0	0.010729	0	0
GPR115	221393	broad.mit.edu	37	6	47680209	47680209	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:47680209C>T	uc003oza.1	+	5	675	c.417C>T	c.(415-417)TGC>TGT	p.C139C	GPR115_uc003oyz.1_Silent_p.C196C|GPR115_uc003ozb.1_Silent_p.C137C	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	139	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GTAAGAACTGCCCCTTTGATT	0.403													28	98					0	0	0.008361	0	0
RHAG	6005	broad.mit.edu	37	6	49604371	49604371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:49604371G>A	uc003ozk.3	-	1	217	c.155C>T	c.(154-156)CCT>CTT	p.P52L	RHAG_uc010jzl.2_Missense_Mutation_p.P52L|RHAG_uc010jzm.2_Missense_Mutation_p.P52L	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	52	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					CTACTCACGAGGATATAACTC	0.373													57	147					0	0	0.014410	0	0
CRISP2	7180	broad.mit.edu	37	6	49666122	49666122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:49666122C>T	uc003ozq.2	-	7	626	c.370G>A	c.(370-372)GGT>AGT	p.G124S	CRISP2_uc003ozl.2_Missense_Mutation_p.G124S|CRISP2_uc003ozn.2_Missense_Mutation_p.G124S|CRISP2_uc003ozr.2_Missense_Mutation_p.G124S|CRISP2_uc003ozo.2_Missense_Mutation_p.G124S|CRISP2_uc003ozm.2_Missense_Mutation_p.G124S|CRISP2_uc003ozp.2_Missense_Mutation_p.G124S	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	124						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			GGTCCTACACCATAGACAAAA	0.408													23	56					0	0	0.012319	0	0
DEFB112	245915	broad.mit.edu	37	6	50016362	50016362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:50016362C>T	uc011dws.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	1					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					TCAATAATTTCATAAGAGTGC	0.323													13	29					0	0	0.013537	0	0
PKHD1	5314	broad.mit.edu	37	6	51907899	51907899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:51907899C>T	uc003pah.1	-	27	3131	c.2855G>A	c.(2854-2856)GGA>GAA	p.G952E	PKHD1_uc003pai.2_Missense_Mutation_p.G952E	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	952	IPT/TIG 4.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAAACCAGTTCCGGTAATGTA	0.353													22	37					0	0	0.014323	0	0
GSTA5	221357	broad.mit.edu	37	6	52698975	52698975	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:52698975C>T	uc003pba.1	-	5	448	c.378G>A	c.(376-378)GAG>GAA	p.E126E		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	126	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	TTTTTATTTTCTCTTTGACCA	0.388													106	354					0	0	0.014410	0	0
FBXO9	26268	broad.mit.edu	37	6	52957291	52957291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:52957291C>T	uc003pbo.2	+	8	799	c.748C>T	c.(748-750)CCG>TCG	p.P250S	FBXO9_uc003pbk.2_Missense_Mutation_p.P206S|FBXO9_uc003pbl.2_Missense_Mutation_p.P240S|FBXO9_uc003pbm.2_Missense_Mutation_p.P130S|FBXO9_uc003pbn.2_Missense_Mutation_p.P130S	NM_012347	NP_036479	Q9UK97	FBX9_HUMAN	F-box only protein 9 isoform 1	250						ubiquitin ligase complex	ubiquitin-protein ligase activity			pancreas(1)	1	Lung NSC(77;0.103)					TAAACTTGTTCCGTACACGTC	0.418													51	126					0	0	0.014410	0	0
GCM1	8521	broad.mit.edu	37	6	52996869	52996869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:52996869C>T	uc003pbp.2	-	4	586	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	GCM1_uc010jzr.2_Missense_Mutation_p.R126Q	NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	126	GCM.					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					CCCATGACCTCGGCAAGGGAT	0.507													28	89					0	0	0.013726	0	0
COL21A1	81578	broad.mit.edu	37	6	55924020	55924020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:55924020C>T	uc003pcs.2	-	29	2861	c.2629G>A	c.(2629-2631)GAA>AAA	p.E877K	COL21A1_uc010jzz.2_Missense_Mutation_p.E262K|COL21A1_uc011dxg.1_Missense_Mutation_p.E250K|COL21A1_uc011dxh.1_Missense_Mutation_p.E228K|COL21A1_uc003pcr.2_Missense_Mutation_p.E234K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	877	Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTCCCTTTTTCCCCATTTCTT	0.448													6	13					0	0	0.003080	0	0
COL21A1	81578	broad.mit.edu	37	6	56044665	56044665	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:56044665C>T	uc003pcs.2	-	3	583	c.351G>A	c.(349-351)GGG>GGA	p.G117G	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Silent_p.G117G|COL21A1_uc003pcu.1_Silent_p.G117G	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	117	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GGATGGCCTTCCCTGTCTTTG	0.478													13	40					0	0	0.013537	0	0
BAI3	577	broad.mit.edu	37	6	69666069	69666069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:69666069C>T	uc003pev.3	+	7	1797	c.1349C>T	c.(1348-1350)CCT>CTT	p.P450L	BAI3_uc010kak.2_Missense_Mutation_p.P450L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	450	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TGCTATAACCCTGAATGTACA	0.517													5	8					0	0	0.001984	0	0
RIMS1	22999	broad.mit.edu	37	6	73108660	73108660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:73108660C>T	uc003pga.2	+	33	4801	c.4724C>T	c.(4723-4725)CCA>CTA	p.P1575L	RIMS1_uc011dyb.1_Missense_Mutation_p.P972L|RIMS1_uc003pgc.2_Missense_Mutation_p.P990L|RIMS1_uc010kaq.2_Missense_Mutation_p.P895L|RIMS1_uc011dyc.1_Missense_Mutation_p.P700L|RIMS1_uc010kar.2_Missense_Mutation_p.P643L|RIMS1_uc011dyd.1_Missense_Mutation_p.P709L|RIMS1_uc003pgf.2_Missense_Mutation_p.P575L|RIMS1_uc003pgg.2_Missense_Mutation_p.P471L|RIMS1_uc003pgi.2_Missense_Mutation_p.P391L|RIMS1_uc003pgh.2_Missense_Mutation_p.P442L|RIMS1_uc003pgd.2_Missense_Mutation_p.P641L|RIMS1_uc003pge.2_Missense_Mutation_p.P615L|RIMS1_uc011dye.1_Missense_Mutation_p.P381L|RIMS1_uc011dyf.1_Missense_Mutation_p.P199L|RIMS1_uc011dyg.1_Missense_Mutation_p.P102L	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1575	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TGTTTAGCTCCATATGTCAAA	0.318													10	15					0	0	0.008291	0	0
FILIP1	27145	broad.mit.edu	37	6	76022427	76022428	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:76022427_76022428GG>AA	uc003pia.2	-	5	3493_3494	c.3120_3121CC>TT	c.(3118-3123)ACCCCA>ACTTCA	p.P1041S	FILIP1_uc003phy.1_Missense_Mutation_p.P1041S|FILIP1_uc003phz.2_Missense_Mutation_p.P942S|FILIP1_uc010kbe.2_Missense_Mutation_p.P1044S|FILIP1_uc003pib.1_Missense_Mutation_p.P793S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1041										skin(3)|ovary(1)	4						TGTTTTTCTGGGGTGACTTTGA	0.45													96	143					0	0	0.004672	0	0
HTR1B	3351	broad.mit.edu	37	6	78172713	78172713	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:78172713G>A	uc003pil.1	-	1	408	c.408C>T	c.(406-408)TCC>TCT	p.S136S		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	136	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	GGTGCAGGATGGAGGCAGTGC	0.607													27	48					0	0	0.027356	0	0
IRAK1BP1	134728	broad.mit.edu	37	6	79577333	79577333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:79577333G>A	uc003pim.2	+	1	145	c.40G>A	c.(40-42)GAA>AAA	p.E14K	IRAK1BP1_uc010kbg.1_RNA	NM_001010844	NP_001010844	Q5VVH5	IKBP1_HUMAN	interleukin-1 receptor-associated kinase 1	14	Intrinsically disordered.				I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus					0		all_cancers(76;0.0398)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)		BRCA - Breast invasive adenocarcinoma(397;0.21)		AGTGTTCGTGGAACTGGTTCC	0.627													50	95					0	0	0.014410	0	0
MRAP2	112609	broad.mit.edu	37	6	84799011	84799011	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:84799011A>G	uc003pkg.3	+	4	619	c.429A>G	c.(427-429)CAA>CAG	p.Q143Q	MRAP2_uc010kbo.2_Silent_p.Q57Q	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	143					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						GTGACGTCCAACTCCAGGAAG	0.522													23	47					0	0	0.021523	0	0
EPHA7	2045	broad.mit.edu	37	6	93964437	93964437	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:93964437C>T	uc003poe.2	-	14	2701	c.2460G>A	c.(2458-2460)TGG>TGA	p.W820*	EPHA7_uc003pof.2_Nonsense_Mutation_p.W815*|EPHA7_uc011eac.1_Nonsense_Mutation_p.W816*	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	820	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TTCCATAGCTCCATACATCAC	0.388													15	17					0	0	0.028581	0	0
KLHL32	114792	broad.mit.edu	37	6	97562220	97562220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:97562220G>A	uc010kcm.1	+	7	1661	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K	KLHL32_uc003poy.2_Missense_Mutation_p.E397K|KLHL32_uc011ead.1_Missense_Mutation_p.E361K|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Missense_Mutation_p.E328K|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	397	Kelch 2.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		GGGTGCCATGGAGGAATACCT	0.517													20	25					0	0	0.010504	0	0
MCHR2	84539	broad.mit.edu	37	6	100369020	100369020	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:100369020C>T	uc003pqh.1	-	6	1134	c.819G>A	c.(817-819)GTG>GTA	p.V273V	MCHR2_uc003pqi.1_Silent_p.V273V	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	273	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TCTGTAAGTTCACCAGTTGTA	0.468													49	60					0	0	0.014410	0	0
GRIK2	2898	broad.mit.edu	37	6	102503254	102503254	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:102503254G>A	uc003pqp.3	+	15	2610	c.2361G>A	c.(2359-2361)GAG>GAA	p.E787E	GRIK2_uc003pqo.3_Silent_p.E787E|GRIK2_uc010kcw.2_Silent_p.E787E	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	787	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	AGCTGCAAGAGGAAGGCAAAC	0.438													15	31					0	0	0.024245	0	0
MICAL1	64780	broad.mit.edu	37	6	109766440	109766440	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:109766440G>A	uc003ptj.2	-	21	3095	c.2841C>T	c.(2839-2841)GCC>GCT	p.A947A	MICAL1_uc003ptk.2_Silent_p.A947A|MICAL1_uc010kdr.2_Silent_p.A861A|MICAL1_uc011eaq.1_Silent_p.A966A	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	947	Potential.				cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		TCACGCCCTCGGCCTCTAGCT	0.567													28	50					0	0	0.027356	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671068	112671068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:112671068G>A	uc003pvx.1	+	3	470	c.158G>A	c.(157-159)CGA>CAA	p.R53Q		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	53	RING-type.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		CCCTTGTGTCGAGACGTGGTG	0.463													22	28					0	0	0.010504	0	0
FRK	2444	broad.mit.edu	37	6	116325089	116325090	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:116325089_116325090GG>AA	uc003pwi.1	-	2	863_864	c.416_417CC>TT	c.(415-417)TCC>TTT	p.S139F		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	139	SH2.				negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		TGATTAGAAAGGAACCGGTCTT	0.366													8	16					0	0	0.004672	0	0
COL10A1	1300	broad.mit.edu	37	6	116442864	116442864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:116442864C>T	uc003pwm.2	-	3	511	c.415G>A	c.(415-417)GGC>AGC	p.G139S	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	139	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CCTGGTGGGCCCCGGGGTCCT	0.607													19	25					0	0	0.007413	0	0
RNF217	154214	broad.mit.edu	37	6	125397950	125397950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:125397950C>T	uc003pzs.2	+	6	891	c.553C>T	c.(553-555)CGC>TGC	p.R185C	RNF217_uc003pzr.2_Missense_Mutation_p.R242C|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	185					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		ATGCAAATATCGCTACCTCCC	0.438													29	45					0	0	0.010818	0	0
LAMA2	3908	broad.mit.edu	37	6	129498907	129498907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:129498907C>T	uc003qbn.2	+	10	1468	c.1363C>T	c.(1363-1365)CGG>TGG	p.R455W	LAMA2_uc003qbo.2_Missense_Mutation_p.R455W	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	455	Laminin EGF-like 3.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GAGCTGTGATCGGTGTGCCAG	0.483													17	16					0	0	0.006122	0	0
LAMA2	3908	broad.mit.edu	37	6	129618834	129618834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:129618834G>A	uc003qbn.2	+	21	2966	c.2861G>A	c.(2860-2862)GGG>GAG	p.G954E	LAMA2_uc003qbo.2_Missense_Mutation_p.G954E	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	954	Laminin EGF-like 9.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGCCAGGCTGGGACCTTTGGC	0.448													11	28					0	0	0.016723	0	0
VNN1	8876	broad.mit.edu	37	6	133013660	133013660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:133013660C>T	uc003qdo.2	-	5	910	c.890G>A	c.(889-891)GGA>GAA	p.G297E		NM_004666	NP_004657	O95497	VNN1_HUMAN	vanin 1 precursor	297	CN hydrolase.				acute inflammatory response|anti-apoptosis|cell-cell adhesion|cellular component movement|chronic inflammatory response|innate immune response|pantothenate metabolic process|positive regulation of T cell differentiation in thymus|response to oxidative stress	anchored to membrane|integral to membrane|plasma membrane	GPI anchor binding|pantetheine hydrolase activity			ovary(3)	3	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.0027)|GBM - Glioblastoma multiforme(226;0.0189)		GAGGAGTTTTCCCTCTTCTGT	0.438													11	20					0	0	0.008291	0	0
EYA4	2070	broad.mit.edu	37	6	133767775	133767775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:133767775G>A	uc003qec.3	+	4	549	c.91G>A	c.(91-93)GAA>AAA	p.E31K	EYA4_uc011ecq.1_Missense_Mutation_p.E31K|EYA4_uc011ecr.1_Missense_Mutation_p.E31K|EYA4_uc003qed.3_Missense_Mutation_p.E31K|EYA4_uc003qee.3_Missense_Mutation_p.E31K|EYA4_uc011ecs.1_Missense_Mutation_p.E31K|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	31					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CAGGTCTATGGAAATGCAGGA	0.398													35	51					0	0	0.023175	0	0
SLC2A12	154091	broad.mit.edu	37	6	134327999	134327999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:134327999C>T	uc003qem.1	-	3	1689	c.1518G>A	c.(1516-1518)ATG>ATA	p.M506I		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	506	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TGCCCCAGTTCATGCTAGAAG	0.488													13	21					0	0	0.016723	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599283	136599283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:136599283G>A	uc003qgx.1	-	4	989	c.736C>T	c.(736-738)CCC>TCC	p.P246S	BCLAF1_uc003qgw.1_Missense_Mutation_p.P246S|BCLAF1_uc003qgy.1_Missense_Mutation_p.P244S|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.P244S	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	246					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CTGAGCATGGGAGCATCAGAG	0.453													8	79					0	0	0.003080	0	0
UTRN	7402	broad.mit.edu	37	6	144769802	144769802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:144769802C>T	uc003qkt.2	+	16	2061	c.1969C>T	c.(1969-1971)CGT>TGT	p.R657C	UTRN_uc010khq.1_Missense_Mutation_p.R657C	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	657	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GGAGACTGTTCGTGTAAGAGA	0.423													38	61					0	0	0.023175	0	0
UTRN	7402	broad.mit.edu	37	6	144843240	144843240	+	Missense_Mutation	SNP	C	T	T	rs144099534		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:144843240C>T	uc003qkt.2	+	39	5758	c.5666C>T	c.(5665-5667)TCG>TTG	p.S1889L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1889					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GTTGAATTATCGCTTAATGTT	0.393													46	64					0	0	0.014410	0	0
PPIL4	85313	broad.mit.edu	37	6	149833342	149833342	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:149833342A>G	uc003qmo.1	-	12	1206	c.1176T>C	c.(1174-1176)TGT>TGC	p.C392C	PPIL4_uc010kic.2_Intron	NM_139126	NP_624311	Q8WUA2	PPIL4_HUMAN	peptidylprolyl isomerase-like 4	392					protein folding	nucleus	nucleotide binding|peptidyl-prolyl cis-trans isomerase activity|RNA binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.11e-11)|GBM - Glioblastoma multiforme(68;0.0885)		TCTCTTCAGAACAGTGATGGG	0.363													51	93					0	0	0.014410	0	0
AKAP12	9590	broad.mit.edu	37	6	151671651	151671651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:151671651G>A	uc011eep.1	+	4	2365	c.2125G>A	c.(2125-2127)GGA>AGA	p.G709R	AKAP12_uc003qoe.2_Missense_Mutation_p.G709R|AKAP12_uc003qof.2_Missense_Mutation_p.G611R|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.G604R	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	709					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		AGCAATGGGAGGAGACCACCA	0.512													49	88					0	0	0.014410	0	0
ZBTB2	57621	broad.mit.edu	37	6	151687318	151687318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:151687318G>A	uc003qoh.2	-	3	1018	c.883C>T	c.(883-885)CTC>TTC	p.L295F		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	295					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		TTGCTACAGAGAGTCAGGGGG	0.542													60	83					0	0	0.014410	0	0
C6orf97	80129	broad.mit.edu	37	6	151907044	151907044	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:151907044C>T	uc003qol.2	+	7	1202	c.1113C>T	c.(1111-1113)GCC>GCT	p.A371A		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	371	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		AGCTTGAAGCCCAAATATCTG	0.458													5	18					0	0	0.014758	0	0
ESR1	2099	broad.mit.edu	37	6	152420037	152420037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:152420037C>T	uc003qom.3	+	10	2094	c.1724C>T	c.(1723-1725)TCA>TTA	p.S575L	ESR1_uc010kin.2_Missense_Mutation_p.S575L|ESR1_uc010kio.2_Missense_Mutation_p.S577L|ESR1_uc010kip.2_Missense_Mutation_p.S574L|ESR1_uc003qon.3_Missense_Mutation_p.S575L|ESR1_uc003qoo.3_Missense_Mutation_p.S575L|ESR1_uc010kiq.2_Missense_Mutation_p.S173L|ESR1_uc010kir.2_Missense_Mutation_p.S314L|ESR1_uc011eet.1_RNA|ESR1_uc011eeu.1_RNA|ESR1_uc011eev.1_Missense_Mutation_p.S160L|ESR1_uc011eew.1_3'UTR|ESR1_uc011eex.1_Missense_Mutation_p.S250L|ESR1_uc011eey.1_3'UTR	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	575	Interaction with AKAP13.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	GGCTCTACTTCATCGCATTCC	0.602													22	47					0	0	0.018920	0	0
MTRF1L	54516	broad.mit.edu	37	6	153314014	153314014	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:153314014G>A	uc003qpi.3	-	5	888	c.783C>T	c.(781-783)GTC>GTT	p.V261V	MTRF1L_uc003qpl.3_Silent_p.V261V|MTRF1L_uc011efa.1_Silent_p.V225V|MTRF1L_uc003qpj.3_Silent_p.V119V|MTRF1L_uc003qpk.3_Silent_p.V225V	NM_019041	NP_061914	Q9UGC7	RF1ML_HUMAN	mitochondrial translational release factor	261						mitochondrion	translation release factor activity, codon specific				0		Ovarian(120;0.125)		OV - Ovarian serous cystadenocarcinoma(155;4.24e-10)|BRCA - Breast invasive adenocarcinoma(81;0.0888)		GAACTATCCGGACAGCACTGT	0.388													60	96					0	0	0.014410	0	0
SYNJ2	8871	broad.mit.edu	37	6	158485992	158485992	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:158485992G>A	uc003qqx.1	+	11	1569	c.1494G>A	c.(1492-1494)GGG>GGA	p.G498G	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Silent_p.G498G|SYNJ2_uc003qqy.1_Silent_p.G211G|SYNJ2_uc011efn.1_Silent_p.G426G|SYNJ2_uc010kjo.1_Silent_p.G447G|SYNJ2_uc003qqz.1_Silent_p.G115G	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	498	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CAGACAAAGGGGGCATGCTGC	0.657													11	16					0	0	0.008291	0	0
PNLDC1	154197	broad.mit.edu	37	6	160240382	160240382	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:160240382C>T	uc003qsx.1	+	18	1668	c.1497C>T	c.(1495-1497)CTC>CTT	p.L499L	PNLDC1_uc003qsy.1_Silent_p.L510L	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	499	Helical; Anchor for type IV membrane protein; (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		ACTGCCTGCTCCAGTAAGTGA	0.632													15	21					0	0	0.004990	0	0
LPA	4018	broad.mit.edu	37	6	161006102	161006102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:161006102C>T	uc003qtl.2	-	27	4385	c.4265G>A	c.(4264-4266)AGG>AAG	p.R1422K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3930	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TAATGGGATCCTCCGATGCCA	0.443													49	100					0	0	0.014410	0	0
MAP3K4	4216	broad.mit.edu	37	6	161518130	161518130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:161518130C>T	uc003qtn.2	+	16	3588	c.3446C>T	c.(3445-3447)CCC>CTC	p.P1149L	MAP3K4_uc010kkc.1_Missense_Mutation_p.P1145L|MAP3K4_uc003qto.2_Missense_Mutation_p.P1149L|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.P602L|MAP3K4_uc003qtp.2_Missense_Mutation_p.P135L	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1149					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		CGGAACAGCCCCCGTCCTATG	0.448													38	67					0	0	0.025465	0	0
PARK2	5071	broad.mit.edu	37	6	161807861	161807861	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:161807861T>C	uc003qtx.3	-	10	1266	c.1132A>G	c.(1132-1134)AGT>GGT	p.S378G	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Missense_Mutation_p.S187G|PARK2_uc003qtw.3_Missense_Mutation_p.S187G|PARK2_uc003qty.3_Missense_Mutation_p.S350G|PARK2_uc003qtz.3_Missense_Mutation_p.S229G|PARK2_uc011egf.1_Missense_Mutation_p.S52G	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	378					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		AATACGGCACTGCACTCCCCT	0.493													44	64					0	0	0.014410	0	0
QKI	9444	broad.mit.edu	37	6	163836228	163836228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:163836228G>A	uc003qui.2	+	1	554	c.3G>A	c.(1-3)ATG>ATA	p.M1I	QKI_uc003que.2_Missense_Mutation_p.M1I|QKI_uc003quf.2_Missense_Mutation_p.M1I|QKI_uc003qug.2_Missense_Mutation_p.M1I|QKI_uc003quh.2_Missense_Mutation_p.M1I|QKI_uc003quj.2_Missense_Mutation_p.M1I	NM_006775	NP_006766	Q96PU8	QKI_HUMAN	quaking homolog, KH domain RNA binding isoform	1					mRNA processing|mRNA transport|regulation of translation|RNA splicing	cytoplasm|nucleus|plasma membrane	RNA binding|SH3 domain binding			large_intestine(1)|ovary(1)	2		Breast(66;5e-05)|Prostate(117;0.0235)|all_neural(5;0.0416)|Ovarian(120;0.0448)|Glioma(2;0.203)		all cancers(1;4.4e-46)|OV - Ovarian serous cystadenocarcinoma(33;6.91e-23)|GBM - Glioblastoma multiforme(1;2.94e-19)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|Kidney(3;0.000199)|KIRC - Kidney renal clear cell carcinoma(3;0.000234)		CCTGGAATATGGTCGGGGAAA	0.393													16	23					0	0	0.024245	0	0
PDE10A	10846	broad.mit.edu	37	6	165957015	165957015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:165957015G>A	uc003qun.2	-	3	320	c.79C>T	c.(79-81)CCC>TCC	p.P27S	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_5'UTR|PDE10A_uc003quo.2_Missense_Mutation_p.P37S	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	27					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	AATACCTGGGGGTGAAGAGAA	0.358													27	42					0	0	0.006320	0	0
WDR27	253769	broad.mit.edu	37	6	170002355	170002355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:170002355G>A	uc003qwx.2	-	23	2904	c.2384C>T	c.(2383-2385)CCT>CTT	p.P795L	WDR27_uc003qwv.1_RNA|WDR27_uc010kkw.1_Missense_Mutation_p.P795L|WDR27_uc003qwy.2_Missense_Mutation_p.P668L			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	765	WD 9.									pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		TCGTCCACAAGGACTGAAAGC	0.483													3	5					0	0	0.009096	0	0
ADAP1	11033	broad.mit.edu	37	7	959629	959629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:959629C>T	uc003sjo.3	-	4	540	c.364G>A	c.(364-366)GAG>AAG	p.E122K	ADAP1_uc011jvs.1_Missense_Mutation_p.E27K|ADAP1_uc003sjn.3_Missense_Mutation_p.E50K|ADAP1_uc010ksc.2_Missense_Mutation_p.E50K	NM_006869	NP_006860	O75689	ADAP1_HUMAN	centaurin, alpha 1	122	Arf-GAP.				cell surface receptor linked signaling pathway|regulation of ARF GTPase activity	cytoplasm|nucleus|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|protein binding|zinc ion binding			upper_aerodigestive_tract(1)	1						TCCTGCTTCTCCGGGTAGATG	0.582													8	36					0	0	0.004482	0	0
INTS1	26173	broad.mit.edu	37	7	1511998	1511998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:1511998G>A	uc003skn.2	-	44	6196	c.6095C>T	c.(6094-6096)CCC>CTC	p.P2032L	INTS1_uc003skm.1_Missense_Mutation_p.P169L	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	2032					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GCTGACCAGGGGCAAGGAGCC	0.672													3	10					0	0	0.004672	0	0
INTS1	26173	broad.mit.edu	37	7	1535814	1535815	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:1535814_1535815GG>AA	uc003skn.2	-	12	1789_1790	c.1688_1689CC>TT	c.(1687-1689)GCC>GTT	p.A563V	INTS1_uc003skp.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	563					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CTTTGTCCCAGGCGATGCCGGC	0.653													31	75					0	0	0.004672	0	0
EIF3B	8662	broad.mit.edu	37	7	2409115	2409115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:2409115C>T	uc003slx.2	+	10	1495	c.1412C>T	c.(1411-1413)TCT>TTT	p.S471F	EIF3B_uc003sly.2_Missense_Mutation_p.S471F|EIF3B_uc003sma.2_Missense_Mutation_p.S199F	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	471					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		AGAGACTTTTCTTGGTCTCCT	0.428													155	346					0	0	0.014410	0	0
C7orf27	221927	broad.mit.edu	37	7	2579448	2579448	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:2579448G>A	uc003smi.2	-	11	1512	c.1470C>T	c.(1468-1470)CTC>CTT	p.L490L	C7orf27_uc003smh.3_5'UTR	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	490					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		TGAGGGGGCCGAGATCAGAGC	0.652													4	40					0	0	0.014758	0	0
RADIL	55698	broad.mit.edu	37	7	4876171	4876171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:4876171C>T	uc003snj.1	-	3	774	c.601G>A	c.(601-603)GGG>AGG	p.G201R	RADIL_uc003sng.1_RNA|RADIL_uc011jwc.1_5'UTR|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	201					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CGGGCATCCCCCAGGGCCGGG	0.682													9	52					0	0	0.004482	0	0
COL28A1	340267	broad.mit.edu	37	7	7495682	7495682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:7495682C>T	uc003src.1	-	16	1481	c.1364G>A	c.(1363-1365)GGG>GAG	p.G455E	COL28A1_uc011jxe.1_Missense_Mutation_p.G138E|COL28A1_uc003srd.2_Missense_Mutation_p.G10E	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	455					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TACCTGTTCCCCTTGACTCCC	0.458													8	58					0	0	0.004482	0	0
DGKB	1607	broad.mit.edu	37	7	14775762	14775762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:14775762G>A	uc003ssz.2	-	4	413	c.226C>T	c.(226-228)CCT>TCT	p.P76S	DGKB_uc011jxt.1_Missense_Mutation_p.P69S|DGKB_uc003sta.2_Missense_Mutation_p.P76S|DGKB_uc011jxu.1_Missense_Mutation_p.P76S|DGKB_uc011jxv.1_Missense_Mutation_p.P76S	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	76					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	AAATCATCAGGAAGCTCGGCT	0.368													5	32					0	0	0.021553	0	0
MEOX2	4223	broad.mit.edu	37	7	15666406	15666406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:15666406C>T	uc003stc.2	-	2	936	c.655G>A	c.(655-657)GAG>AAG	p.E219K	MEOX2_uc011jxw.1_Missense_Mutation_p.E219K	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	219	Homeobox.				blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		ACTGCTATCTCGTATCGCCTC	0.418													7	42					0	0	0.003080	0	0
ABCB5	340273	broad.mit.edu	37	7	20738039	20738039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:20738039C>T	uc003suw.3	+	8	1231	c.685C>T	c.(685-687)CCT>TCT	p.P229S	ABCB5_uc010kuh.2_Missense_Mutation_p.P674S	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	229	Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GATAAGTCTTCCTGAAGTCTC	0.333													15	35					0	0	0.020292	0	0
ABCB5	340273	broad.mit.edu	37	7	20744422	20744422	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:20744422A>T	uc003suw.3	+	11	1624	c.1078A>T	c.(1078-1080)ATT>TTT	p.I360F	ABCB5_uc010kuh.2_Missense_Mutation_p.I805F	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	360	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TATAGCACAAATTCAAGGAGT	0.363													10	69					0	0	0.006214	0	0
DNAH11	8701	broad.mit.edu	37	7	21639432	21639432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:21639432C>T	uc003svc.2	+	15	2726	c.2695C>T	c.(2695-2697)CCC>TCC	p.P899S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	899	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CAAAGCCAATCCCTCTCTGGA	0.343									Kartagener_syndrome				6	23					0	0	0.021553	0	0
DNAH11	8701	broad.mit.edu	37	7	21778471	21778471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:21778471G>A	uc003svc.2	+	48	7850	c.7819G>A	c.(7819-7821)GAT>AAT	p.D2607N		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2607	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCAGCATATTGATTATGGACA	0.338									Kartagener_syndrome				5	6					0	0	0.003080	0	0
DNAH11	8701	broad.mit.edu	37	7	21826324	21826324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:21826324C>T	uc003svc.2	+	60	9732	c.9701C>T	c.(9700-9702)GCT>GTT	p.A3234V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3234	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTCCTTCTGGCTCCTCGGGGA	0.502									Kartagener_syndrome				13	93					0	0	0.024245	0	0
C7orf30	115416	broad.mit.edu	37	7	23349140	23349140	+	Missense_Mutation	SNP	C	T	T	rs147835768		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:23349140C>T	uc003swd.1	+	4	715	c.683C>T	c.(682-684)CCA>CTA	p.P228L	C7orf30_uc003swe.2_RNA	NM_138446	NP_612455	Q96EH3	CG030_HUMAN	hypothetical protein LOC115416	228						mitochondrion					0			GBM - Glioblastoma multiforme(13;0.154)			TCTGTGACTCCAGTGGAGTTA	0.383													8	59					0	0	0.004482	0	0
STK31	56164	broad.mit.edu	37	7	23768836	23768836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:23768836C>T	uc003sws.3	+	6	518	c.451C>T	c.(451-453)CCT>TCT	p.P151S	STK31_uc003swt.3_Missense_Mutation_p.P128S|STK31_uc011jze.1_Missense_Mutation_p.P151S|STK31_uc010kuq.2_Missense_Mutation_p.P128S	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	151							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						ACTACACATTCCTTCTGATCA	0.328													27	44					0	0	0.027356	0	0
HOXA3	3200	broad.mit.edu	37	7	27149927	27149927	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:27149927G>A	uc011jzl.1	-	2	533	c.333C>T	c.(331-333)CCC>CCT	p.P111P	HOXA3_uc011jzk.1_Intron|HOXA3_uc003syk.2_Silent_p.P111P	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	111	Pro-rich.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						taggtgcagggggctgaggtg	0.313													3	21					0	0	0.009096	0	0
HOXA9	3205	broad.mit.edu	37	7	27204900	27204900	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:27204900C>T	uc003syt.2	-	1	250	c.177G>A	c.(175-177)AAG>AAA	p.K59K		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	59							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						ACACCGTCGCCTTGGACTGGA	0.716			T	NUP98|MSI2	AML*								7	7					0	0	0.001984	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31117622	31117622	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:31117622G>A	uc003tca.1	+	4	397	c.174G>A	c.(172-174)TGG>TGA	p.W58*	ADCYAP1R1_uc003tcb.1_Nonsense_Mutation_p.W58*|ADCYAP1R1_uc003tcc.1_Nonsense_Mutation_p.W58*|ADCYAP1R1_uc003tcd.1_Nonsense_Mutation_p.W58*|ADCYAP1R1_uc003tce.1_Nonsense_Mutation_p.W58*	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	58	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CTGGGATGTGGGACAACATCA	0.443													18	89					0	0	0.006122	0	0
PDE1C	5137	broad.mit.edu	37	7	31864525	31864525	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:31864525G>A	uc003tcm.1	-	13	1831	c.1362C>T	c.(1360-1362)ATC>ATT	p.I454I	PDE1C_uc003tcn.1_Silent_p.I454I|PDE1C_uc003tco.1_Silent_p.I514I|PDE1C_uc003tcr.2_Silent_p.I454I|PDE1C_uc003tcs.2_Silent_p.I454I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	454	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGGTTTCATCGATTAATGGAC	0.498													15	88					0	0	0.028581	0	0
NPSR1	387129	broad.mit.edu	37	7	34851439	34851439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:34851439C>T	uc003teg.1	+	4	570	c.442C>T	c.(442-444)CAT>TAT	p.H148Y	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.H148Y|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.H148Y|NPSR1_uc010kww.1_Missense_Mutation_p.H137Y|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	148	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AGACAGATACCATGCCATCGT	0.483													47	112					0	0	0.014410	0	0
ELMO1	9844	broad.mit.edu	37	7	37283972	37283972	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:37283972G>A	uc003tfk.1	-	7	745	c.438C>T	c.(436-438)ATC>ATT	p.I146I	ELMO1_uc011kbc.1_Silent_p.I50I|ELMO1_uc010kxg.1_Silent_p.I146I	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	146					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						AAGGCTTCATGATCTTCTGCA	0.348													6	83					0	0	0.001984	0	0
TXNDC3	51314	broad.mit.edu	37	7	37890311	37890311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:37890311G>A	uc003tfn.2	+	5	544	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	58	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TGAACTGAACGAAGACGAAAT	0.318									Kartagener_syndrome				7	75					0	0	0.004482	0	0
AMPH	273	broad.mit.edu	37	7	38500937	38500937	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:38500937G>A	uc003tgu.2	-	11	1032	c.963C>T	c.(961-963)ATC>ATT	p.I321I	AMPH_uc003tgv.2_Silent_p.I321I|AMPH_uc003tgt.2_Silent_p.I74I	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	321					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CAAAGAAACTGATGATGTTCT	0.468													26	118					0	0	0.007291	0	0
INHBA	3624	broad.mit.edu	37	7	41729931	41729931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:41729931C>T	uc003thq.2	-	2	833	c.598G>A	c.(598-600)GAG>AAG	p.E200K	INHBA_uc003thr.2_Missense_Mutation_p.E200K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	200					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TCACTCCTCTCCCCCTTTAAG	0.582										TSP Lung(11;0.080)			12	52					0	0	0.013537	0	0
HECW1	23072	broad.mit.edu	37	7	43484616	43484616	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:43484616G>A	uc003tid.1	+	11	2450	c.1845G>A	c.(1843-1845)GAG>GAA	p.E615E	HECW1_uc011kbi.1_Silent_p.E615E	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	615					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CCCTGGAAGAGGACAGAGAAG	0.701													7	24					0	0	0.001984	0	0
CAMK2B	816	broad.mit.edu	37	7	44282236	44282236	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:44282236G>A	uc003tkq.2	-	9	829	c.619C>T	c.(619-621)CTG>TTG	p.L207L	CAMK2B_uc003tkp.2_Silent_p.L207L|CAMK2B_uc003tkx.2_Silent_p.L207L|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Silent_p.L207L|CAMK2B_uc003tks.2_Silent_p.L207L|CAMK2B_uc003tku.2_Silent_p.L207L|CAMK2B_uc003tkv.2_Silent_p.L207L|CAMK2B_uc003tkt.2_Silent_p.L207L|CAMK2B_uc003tkw.2_Silent_p.L207L|CAMK2B_uc010kyc.2_Silent_p.L207L	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	207	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						CCCACGAGCAGGATGTACAGG	0.627													10	18					0	0	0.010729	0	0
OGDH	4967	broad.mit.edu	37	7	44736150	44736150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:44736150C>T	uc003tln.2	+	14	2003	c.1894C>T	c.(1894-1896)CAT>TAT	p.H632Y	OGDH_uc011kbx.1_Missense_Mutation_p.H628Y|OGDH_uc011kby.1_Missense_Mutation_p.H482Y|OGDH_uc003tlp.2_Missense_Mutation_p.H643Y|OGDH_uc011kbz.1_Missense_Mutation_p.H427Y|OGDH_uc003tlo.1_Missense_Mutation_p.H465Y	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	632					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CTTTACTATTCATGGAGGTAA	0.567													12	93					0	0	0.020292	0	0
MYO1G	64005	broad.mit.edu	37	7	45005696	45005696	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:45005696G>A	uc003tmh.2	-	16	2277	c.2133C>T	c.(2131-2133)CCC>CCT	p.P711P	MYO1G_uc003tmf.2_Silent_p.P154P|MYO1G_uc003tmg.2_Silent_p.P473P|MYO1G_uc010kym.2_Silent_p.P596P|MYO1G_uc003tmi.1_3'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	711	IQ.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						GCACAATGATGGGGATGAGGC	0.612													14	58					0	0	0.006122	0	0
ADCY1	107	broad.mit.edu	37	7	45725734	45725734	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:45725734C>T	uc003tne.3	+	13	2265	c.2247C>T	c.(2245-2247)TCC>TCT	p.S749S		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	749					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGGTGTCCTCCTTGCCAAAAA	0.602													48	90					0	0	0.014410	0	0
ADCY1	107	broad.mit.edu	37	7	45726174	45726174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:45726174G>A	uc003tne.3	+	14	2374	c.2356G>A	c.(2356-2358)GAG>AAG	p.E786K		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	786	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GCGCAGCTACGAGCCGATTGT	0.632													15	101					0	0	0.004990	0	0
ADCY1	107	broad.mit.edu	37	7	45753460	45753460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:45753460C>T	uc003tne.3	+	20	3244	c.3226C>T	c.(3226-3228)CCA>TCA	p.P1076S		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1076	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GAAAATGTGTCCATTTGGGAG	0.587													17	152					0	0	0.006122	0	0
PKD1L1	168507	broad.mit.edu	37	7	47906088	47906088	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:47906088A>C	uc003tny.1	-	25	4021	c.4021T>G	c.(4021-4023)TCC>GCC	p.S1341A		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1341	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGGTTGCAGGAGGCAGTTTTG	0.453													54	76					0	0	0.014410	0	0
ABCA13	154664	broad.mit.edu	37	7	48318429	48318429	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:48318429C>T	uc003toq.2	+	18	7663	c.7638C>T	c.(7636-7638)TCC>TCT	p.S2546S	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2546					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATTTTATCTCCAATACCAAGG	0.353													29	168					0	0	0.008361	0	0
ABCA13	154664	broad.mit.edu	37	7	48443435	48443435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:48443435C>T	uc003toq.2	+	39	12054	c.12029C>T	c.(12028-12030)TCC>TTC	p.S4010F	ABCA13_uc010kys.1_Missense_Mutation_p.S1084F|ABCA13_uc003tos.1_Missense_Mutation_p.S836F|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4010	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GACCCTTGCTCCCGGCATAGC	0.557													8	16					0	0	0.006214	0	0
ABCA13	154664	broad.mit.edu	37	7	48451959	48451959	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:48451959C>T	uc003toq.2	+	41	12263	c.12238C>T	c.(12238-12240)CTG>TTG	p.L4080L	ABCA13_uc010kys.1_Silent_p.L1154L|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4080					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCCTTCTGTTCTGGAGGCCCA	0.363													3	22					0	0	0.004672	0	0
COBL	23242	broad.mit.edu	37	7	51097060	51097060	+	Missense_Mutation	SNP	G	A	A	rs34883796		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:51097060G>A	uc003tpr.3	-	10	1918	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	COBL_uc003tps.2_Missense_Mutation_p.S635F|COBL_uc011kcl.1_Missense_Mutation_p.S578F|COBL_uc003tpp.3_Missense_Mutation_p.S364F|COBL_uc003tpq.3_Missense_Mutation_p.S519F|COBL_uc003tpo.3_Missense_Mutation_p.S120F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	578										skin(3)|ovary(2)	5	Glioma(55;0.08)					TGGCGCCAGGGAGTCTCTCCT	0.552													18	64					0	0	0.006122	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617587	54617587	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:54617587A>C	uc010kzf.2	+	4	763	c.358A>C	c.(358-360)AAG>CAG	p.K120Q	VSTM2A_uc010kze.2_Missense_Mutation_p.K120Q|VSTM2A_uc003tqc.3_Missense_Mutation_p.K120Q	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	120	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			AGTGAGGAAAAAGGATGAAGG	0.443													15	40					0	0	0.004990	0	0
SEPT14	346288	broad.mit.edu	37	7	55872951	55872951	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:55872951C>T	uc003tqz.2	-	9	1236	c.1119G>A	c.(1117-1119)GAG>GAA	p.E373E		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	373	Potential.				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CAGTACTAACCTCTTTTTCAG	0.338													7	78					0	0	0.004482	0	0
ZNF735	730291	broad.mit.edu	37	7	63680174	63680174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:63680174G>A	uc011kdn.1	+	4	745	c.745G>A	c.(745-747)GCC>ACC	p.A249T		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	249	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGTGGCAAAGCCTTTAGGTG	0.453													3	9					0	0	0.004672	0	0
ZNF679	168417	broad.mit.edu	37	7	63726757	63726757	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:63726757T>A	uc003tsx.2	+	5	1015	c.746T>A	c.(745-747)TTT>TAT	p.F249Y		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	249	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGCAAAGCTTTTACCTGGTCC	0.433													5	32					0	0	0.001984	0	0
GUSB	2990	broad.mit.edu	37	7	65444845	65444845	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:65444845C>T	uc003tun.2	-	3	526	c.450G>A	c.(448-450)GAG>GAA	p.E150E	GUSB_uc011kdt.1_Silent_p.E150E|GUSB_uc010kzw.1_Intron	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	150			E -> K (in MPS7).		glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						TGATGTCGGCCTCGAAGGGGA	0.642													25	23					0	0	0.018920	0	0
TYW1B	441250	broad.mit.edu	37	7	72081675	72081675	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:72081675G>A	uc011kej.1	-	16	1926	c.1767C>T	c.(1765-1767)CTC>CTT	p.L589L	TYW1B_uc011keh.1_Silent_p.L427L|TYW1B_uc011kei.1_Silent_p.L215L	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	589					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						GTGCTATCAGGAGGCAATTAG	0.448													22	138					0	0	0.016522	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334931	72334931	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:72334931C>T	uc010lal.1	-	1		c.4725G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						GGGGCACCACCAAGAGAGGCC	0.587													12	64					0	0	0.010504	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657286	72657286	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:72657286G>A	uc003txs.1	-	13	2626	c.1698C>T	c.(1696-1698)TCC>TCT	p.S566S	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ggccctgccaggagttttctc	0													35	147					0	0	0.019004	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657705	72657705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:72657705C>T	uc003txs.1	-	13	2207	c.1279G>A	c.(1279-1281)GAA>AAA	p.E427K	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ccatcgctttcatttctggaa	0													91	144					0	0	0.014410	0	0
CLDN3	1365	broad.mit.edu	37	7	73184241	73184241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:73184241C>T	uc003tzg.3	-	1	360	c.139G>A	c.(139-141)GAG>AAG	p.E47K	RFC2_uc011kfa.1_Intron	NM_001306	NP_001297	O15551	CLD3_HUMAN	claudin 3	47	Extracellular (Potential).				response to hypoxia	integral to plasma membrane|tight junction	structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				CACAGGCCCTCCCAGATGTTC	0.647													25	61					0	0	0.007291	0	0
ELN	2006	broad.mit.edu	37	7	73459572	73459572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:73459572G>A	uc003tzw.2	+	10	581	c.490G>A	c.(490-492)GGG>AGG	p.G164R	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_Intron|ELN_uc011kfe.1_Missense_Mutation_p.G133R|ELN_uc003tzn.2_Missense_Mutation_p.G164R|ELN_uc003tzz.2_Missense_Mutation_p.G152R|ELN_uc003tzo.2_Missense_Mutation_p.G164R|ELN_uc003tzp.2_Intron|ELN_uc003tzq.2_Intron|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.G164R|ELN_uc003tzt.2_Missense_Mutation_p.G169R|ELN_uc003tzu.2_Missense_Mutation_p.G169R|ELN_uc003tzv.2_Missense_Mutation_p.G154R|ELN_uc003tzx.2_Missense_Mutation_p.G154R|ELN_uc011kff.1_Missense_Mutation_p.G164R|ELN_uc003tzy.2_Missense_Mutation_p.G159R	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	164					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CCCCGGTGTGGGGGTGCTCCC	0.542			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						18	111					0	0	0.010504	0	0
CLIP2	7461	broad.mit.edu	37	7	73768317	73768317	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:73768317G>A	uc003uam.2	+	4	1113	c.786G>A	c.(784-786)GGG>GGA	p.G262G	CLIP2_uc003uan.2_Silent_p.G262G	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	262	CAP-Gly 2.					microtubule associated complex				skin(3)	3						AGAATGATGGGGCGGTGGCGG	0.652													101	224					0	0	0.014410	0	0
CLIP2	7461	broad.mit.edu	37	7	73790984	73790984	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:73790984C>T	uc003uam.2	+	10	2580	c.2253C>T	c.(2251-2253)TTC>TTT	p.F751F	CLIP2_uc003uan.2_Silent_p.F716F|CLIP2_uc003uao.2_Silent_p.F145F	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	751	Potential.					microtubule associated complex				skin(3)	3						CTATCGAGTTCCTCAAGGAGC	0.637													31	68					0	0	0.021022	0	0
GTF2I	2969	broad.mit.edu	37	7	74159269	74159269	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:74159269C>T	uc003uau.2	+	21	2293	c.1923C>T	c.(1921-1923)TTC>TTT	p.F641F	GTF2I_uc003uav.2_Silent_p.F620F|GTF2I_uc003uaw.2_Silent_p.F621F|GTF2I_uc003uay.2_Silent_p.F619F|GTF2I_uc003uax.2_Silent_p.F600F	NM_032999	NP_127492	P78347	GTF2I_HUMAN	general transcription factor IIi isoform 1	641	GTF2I-like 4.				negative regulation of angiogenesis|signal transduction|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						AAATCAAGTTCGTTGTTAAAA	0.413													25	218					0	0	0.007291	0	0
CCL24	6369	broad.mit.edu	37	7	75441266	75441266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:75441266C>T	uc011kga.1	-	3	208	c.208G>A	c.(208-210)GGC>AGC	p.G70S		NM_002991	NP_002982	O00175	CCL24_HUMAN	small inducible cytokine A24 precursor	70					cell-cell signaling|chemotaxis|immune response|inflammatory response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|signal transduction	extracellular space	chemokine activity				0						AACTGCTGGCCCTTCTTGGTG	0.612													24	84					0	0	0.007291	0	0
PHTF2	57157	broad.mit.edu	37	7	77583174	77583174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:77583174C>T	uc003ugs.3	+	18	2426	c.2300C>T	c.(2299-2301)TCT>TTT	p.S767F	PHTF2_uc003ugq.3_Missense_Mutation_p.S729F|PHTF2_uc010ldv.2_Missense_Mutation_p.S677F|PHTF2_uc003ugt.3_Missense_Mutation_p.S733F|PHTF2_uc003ugu.3_Missense_Mutation_p.S729F	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	767	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						TCAGCTGTTTCTGGTGTTATC	0.383													29	44					0	0	0.006320	0	0
MAGI2	9863	broad.mit.edu	37	7	77998513	77998513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:77998513C>T	uc003ugx.2	-	7	1317	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K	MAGI2_uc003ugy.2_Missense_Mutation_p.E355K|MAGI2_uc010ldx.1_5'UTR|MAGI2_uc010ldy.1_5'UTR|MAGI2_uc011kgr.1_Missense_Mutation_p.E187K|MAGI2_uc011kgs.1_Missense_Mutation_p.E192K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	355	WW 2.|Interaction with DDN.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCGATTTTTTCCCAGCCATAT	0.259													24	54					0	0	0.009535	0	0
HGF	3082	broad.mit.edu	37	7	81331939	81331939	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:81331939C>T	uc003uhl.2	-	18	2310	c.2145G>A	c.(2143-2145)TGG>TGA	p.W715*	HGF_uc003uhm.2_Nonsense_Mutation_p.W710*	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	715	Peptidase S1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TTTTGTGTATCCATTTTGCAT	0.373													12	32					0	0	0.013537	0	0
HGF	3082	broad.mit.edu	37	7	81381451	81381451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:81381451G>A	uc003uhl.2	-	5	775	c.610C>T	c.(610-612)CCT>TCT	p.P204S	HGF_uc003uhm.2_Missense_Mutation_p.P199S|HGF_uc003uhn.1_Missense_Mutation_p.P204S|HGF_uc003uho.1_Missense_Mutation_p.P199S|HGF_uc003uhp.2_Missense_Mutation_p.P204S	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	204	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GAACACTGAGGAATGTCACAG	0.458													14	46					0	0	0.024245	0	0
HGF	3082	broad.mit.edu	37	7	81381563	81381563	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:81381563G>A	uc003uhl.2	-	5	663	c.498C>T	c.(496-498)AGC>AGT	p.S166S	HGF_uc003uhm.2_Silent_p.S161S|HGF_uc003uhn.1_Silent_p.S166S|HGF_uc003uho.1_Silent_p.S161S|HGF_uc003uhp.2_Silent_p.S166S	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	166	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TACCCCGATAGCTCGAAGGCA	0.398													16	59					0	0	0.012319	0	0
PCLO	27445	broad.mit.edu	37	7	82538228	82538228	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:82538228C>G	uc003uhx.2	-	8	13691	c.13402G>C	c.(13402-13404)GTC>CTC	p.V4468L	PCLO_uc003uhv.2_Missense_Mutation_p.V4468L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4399					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTAGAGTGGACCAATCTTTCC	0.413													12	27					0	0	0.013537	0	0
PCLO	27445	broad.mit.edu	37	7	82544594	82544594	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:82544594G>A	uc003uhx.2	-	7	12997	c.12708C>T	c.(12706-12708)CTC>CTT	p.L4236L	PCLO_uc003uhv.2_Silent_p.L4236L|PCLO_uc010lec.2_Silent_p.L1201L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4167					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CATCTTGAAGGAGCCTTGCCC	0.398													12	26					0	0	0.016723	0	0
PCLO	27445	broad.mit.edu	37	7	82545065	82545065	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:82545065G>A	uc003uhx.2	-	7	12526	c.12237C>T	c.(12235-12237)CTC>CTT	p.L4079L	PCLO_uc003uhv.2_Silent_p.L4079L|PCLO_uc010lec.2_Silent_p.L1044L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4010					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGTTCGAAGGAGACGGTCTG	0.463													5	14					0	0	0.014758	0	0
PCLO	27445	broad.mit.edu	37	7	82583736	82583736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:82583736G>A	uc003uhx.2	-	5	6822	c.6533C>T	c.(6532-6534)CCC>CTC	p.P2178L	PCLO_uc003uhv.2_Missense_Mutation_p.P2178L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2109					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTGTCAGAGGGTGGGACAGA	0.428													21	47					0	0	0.012319	0	0
ABCB4	5244	broad.mit.edu	37	7	87060831	87060831	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:87060831G>A	uc003uiv.1	-	15	1858	c.1782C>T	c.(1780-1782)GTC>GTT	p.V594V	ABCB4_uc003uiw.1_Silent_p.V594V|ABCB4_uc003uix.1_Silent_p.V594V	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	594	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTGCATTTCGGACCGTAGACA	0.488													42	121					0	0	0.010771	0	0
ABCB1	5243	broad.mit.edu	37	7	87179492	87179492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:87179492C>T	uc003uiz.1	-	13	1763	c.1345G>A	c.(1345-1347)GGG>AGG	p.G449R	ABCB1_uc011khc.1_Missense_Mutation_p.G385R	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	449	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CTCACCATCCCCTCTGTGGGG	0.527													24	63					0	0	0.018920	0	0
ADAM22	53616	broad.mit.edu	37	7	87811273	87811273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:87811273G>A	uc003ujn.2	+	29	2589	c.2510G>A	c.(2509-2511)GGT>GAT	p.G837D	ADAM22_uc003ujk.1_Missense_Mutation_p.G837D|ADAM22_uc003ujl.1_Missense_Mutation_p.G801D|ADAM22_uc003ujm.2_Missense_Mutation_p.G801D|ADAM22_uc003ujo.2_Missense_Mutation_p.G801D|ADAM22_uc003ujp.1_Missense_Mutation_p.G889D	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	837	Cytoplasmic (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TCTTTTTCAGGTAACCTGGGA	0.398													15	53					0	0	0.004990	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963128	88963128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:88963128G>A	uc011khi.1	+	4	1370	c.832G>A	c.(832-834)GAA>AAA	p.E278K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	278						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CCTTACCAAGGAAAAAGAGGT	0.358										HNSCC(36;0.09)			9	33					0	0	0.006214	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964106	88964106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:88964106G>A	uc011khi.1	+	4	2348	c.1810G>A	c.(1810-1812)GAA>AAA	p.E604K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	604						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CAAACTTAAGGAAGCTTCAAG	0.378										HNSCC(36;0.09)			13	37					0	0	0.013537	0	0
AKAP9	10142	broad.mit.edu	37	7	91660864	91660864	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:91660864C>T	uc003ulg.2	+	16	4509	c.4284C>T	c.(4282-4284)ATC>ATT	p.I1428I	AKAP9_uc003ule.2_Silent_p.I1440I|AKAP9_uc003ulf.2_Silent_p.I1428I|AKAP9_uc003uli.2_Silent_p.I1053I	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1440	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAACAAATATCGTTAAGTTGC	0.289			T	BRAF	papillary thyroid								70	174					0	0	0.014410	0	0
PEX1	5189	broad.mit.edu	37	7	92136429	92136429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:92136429G>A	uc003uly.2	-	10	1778	c.1682C>T	c.(1681-1683)TCC>TTC	p.S561F	PEX1_uc011khr.1_Missense_Mutation_p.S353F|PEX1_uc010ley.2_Missense_Mutation_p.S561F|PEX1_uc011khs.1_Missense_Mutation_p.S239F|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	561					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TACGCCTAAGGAATTCACTCC	0.428													20	45					0	0	0.007413	0	0
SAMD9	54809	broad.mit.edu	37	7	92731217	92731217	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:92731217G>A	uc003umf.2	-	3	4450	c.4194C>T	c.(4192-4194)ATC>ATT	p.I1398I	SAMD9_uc003umg.2_Silent_p.I1398I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1398						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AGGTAGGTTGGATACAGGAGA	0.368													52	132					0	0	0.014410	0	0
SAMD9	54809	broad.mit.edu	37	7	92731247	92731247	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:92731247G>A	uc003umf.2	-	3	4420	c.4164C>T	c.(4162-4164)TTC>TTT	p.F1388F	SAMD9_uc003umg.2_Silent_p.F1388F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1388						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGGCCAAGATGAAATTTAGCT	0.358													41	112					0	0	0.023175	0	0
CASD1	64921	broad.mit.edu	37	7	94167028	94167028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:94167028C>T	uc003uni.3	+	9	1315	c.1088C>T	c.(1087-1089)TCA>TTA	p.S363L	CASD1_uc003unh.2_3'UTR|CASD1_uc003unj.3_Missense_Mutation_p.S363L	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	363						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			CCTGTGTCTTCATTAGAAATA	0.338													25	77					0	0	0.027356	0	0
PON1	5444	broad.mit.edu	37	7	94940786	94940786	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:94940786G>A	uc003uns.2	-	5	571	c.474C>T	c.(472-474)ACC>ACT	p.T158T	PON1_uc011kih.1_Silent_p.T158T	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	158					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	TATGTCTGATGGTTTTTAGAT	0.378													40	109					0	0	0.009718	0	0
SLC25A13	10165	broad.mit.edu	37	7	95822397	95822397	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:95822397G>A	uc003uof.3	-	6	758	c.567C>T	c.(565-567)ACC>ACT	p.T189T	SLC25A13_uc003uog.3_Silent_p.T189T|SLC25A13_uc011kik.1_Silent_p.T81T	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	189	EF-hand 4.				ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	GGGGGCGGATGGTGACCATGA	0.458													18	61					0	0	0.008871	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99117470	99117470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:99117470C>T	uc003uqv.2	+	4	698	c.574C>T	c.(574-576)CCT>TCT	p.P192S	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.P192S|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.P192S|ZKSCAN5_uc003uqx.2_Intron|ZKSCAN5_uc003uqy.2_5'UTR	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	192					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCTCCAAGTTCCTTCCCTTCC	0.532													33	98					0	0	0.023175	0	0
CYP3A4	1576	broad.mit.edu	37	7	99377689	99377689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:99377689C>T	uc003urv.1	-	2	195	c.91G>A	c.(91-93)GGA>AGA	p.G31R	CYP3A4_uc003urw.1_Missense_Mutation_p.G31R|CYP3A4_uc011kiz.1_Missense_Mutation_p.G31R|CYP3A4_uc011kja.1_Intron|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	31					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	TTAAAAAGTCCATGTGAATGG	0.398													14	47					0	0	0.004990	0	0
CYP3A43	64816	broad.mit.edu	37	7	99434114	99434114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:99434114G>A	uc003urx.1	+	2	213	c.110G>A	c.(109-111)GGA>GAA	p.G37E	CYP3A43_uc003ury.1_Missense_Mutation_p.G37E|CYP3A43_uc003urz.1_Missense_Mutation_p.G37E|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Missense_Mutation_p.G37E|CYP3A43_uc003usb.1_Intron	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	37			YGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNFDRECN EKYGEMWGLYEGQQPMLVIMDPD -> LGPIHINFLRSWEF LGQPLCLFWELFCSTLGVFGILTENVMKNTEKCGGCMRGNS PCWSSWIPT (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AAGAAGCTGGGAATTCCTGGG	0.393													45	62					0	0	0.014410	0	0
TSC22D4	81628	broad.mit.edu	37	7	100075452	100075452	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100075452G>A	uc003uva.2	-	2	965	c.210C>T	c.(208-210)TCC>TCT	p.S70S	TSC22D4_uc003uvb.2_Intron|TSC22D4_uc011kjv.1_Intron|TSC22D4_uc010lgx.2_Silent_p.S70S|TSC22D4_uc003uvc.3_Silent_p.S70S	NM_030935	NP_112197	Q9Y3Q8	T22D4_HUMAN	TSC22 domain family, member 4	70					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			breast(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCCGGAAACGGGAGGAAGGGG	0.716													6	23					0	0	0.021553	0	0
TSC22D4	81628	broad.mit.edu	37	7	100075471	100075471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100075471G>A	uc003uva.2	-	2	946	c.191C>T	c.(190-192)CCA>CTA	p.P64L	TSC22D4_uc003uvb.2_Intron|TSC22D4_uc011kjv.1_Intron|TSC22D4_uc010lgx.2_Missense_Mutation_p.P64L|TSC22D4_uc003uvc.3_Missense_Mutation_p.P64L	NM_030935	NP_112197	Q9Y3Q8	T22D4_HUMAN	TSC22 domain family, member 4	64					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			breast(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCCCCAGGTGGTGGGGAGCC	0.716													7	15					0	0	0.003080	0	0
C7orf51	222950	broad.mit.edu	37	7	100086497	100086498	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100086497_100086498CC>TT	uc003uvd.1	+	4	1312_1313	c.1153_1154CC>TT	c.(1153-1155)CCA>TTA	p.P385L	C7orf51_uc003uve.1_Missense_Mutation_p.P167L	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	385	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GACGCCTCCCCCACCGCCTCCA	0.713													28	64					0	0	0.004672	0	0
LRCH4	4034	broad.mit.edu	37	7	100175447	100175447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100175447G>A	uc003uvj.2	-	8	1090	c.1037C>T	c.(1036-1038)TCA>TTA	p.S346L	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	346					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTACTCACCTGAGCCATCCTC	0.637													29	70					0	0	0.010818	0	0
FBXO24	26261	broad.mit.edu	37	7	100192111	100192111	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100192111A>G	uc003uvm.1	+	6	1192	c.899A>G	c.(898-900)CAC>CGC	p.H300R	FBXO24_uc003uvl.1_Missense_Mutation_p.H286R|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Missense_Mutation_p.H338R|FBXO24_uc011kka.1_Missense_Mutation_p.H288R	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	300						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TACCTGCCTCACCTGCGCGTG	0.597													24	71					0	0	0.014323	0	0
MOSPD3	64598	broad.mit.edu	37	7	100212785	100212785	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100212785C>T	uc003uvq.2	+	6	889	c.687C>T	c.(685-687)ACC>ACT	p.T229T	MOSPD3_uc003uvr.2_Silent_p.T229T|MOSPD3_uc003uvs.2_Silent_p.T229T|MOSPD3_uc003uvt.2_Silent_p.T219T	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	229	Helical; (Potential).					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GCCTCCTCACCATGGTGTTCC	0.622													31	97					0	0	0.012213	0	0
TFR2	7036	broad.mit.edu	37	7	100229531	100229531	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100229531A>T	uc003uvv.1	-	8	1045	c.1004T>A	c.(1003-1005)TTC>TAC	p.F335Y	TFR2_uc010lhc.1_5'UTR|TFR2_uc003uvu.1_Missense_Mutation_p.F164Y	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	335	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAAGGAAGGGAAGCCAGGTGT	0.582													43	116					0	0	0.007835	0	0
Unknown	0	broad.mit.edu	37	7	100552243	100552243	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100552243C>T	uc003uxk.1	+	1		c.1494C>T			uc003uxl.1_Missense_Mutation_p.P232S					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TACCATAGTCCCTGCCTCTCC	0.478													90	702					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	7	100610057	100610057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100610057G>A	uc003uxl.1	+	10	3042	c.2242G>A	c.(2242-2244)GAT>AAT	p.D748N	uc003uxm.1_5'Flank|uc003uxn.1_Intron|uc010lhn.1_RNA					SubName: Full=Intestinal mucin; Flags: Fragment;																		tcTAGACAAGGATACAAATTT	0.294													37	183					0	0	0.007835	0	0
MUC17	140453	broad.mit.edu	37	7	100679583	100679583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100679583G>A	uc003uxp.1	+	3	4939	c.4886G>A	c.(4885-4887)GGA>GAA	p.G1629E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1629	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|25.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTAGTGAAGGAAGTCCTCTA	0.502													153	411					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100679927	100679927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100679927C>T	uc003uxp.1	+	3	5283	c.5230C>T	c.(5230-5232)CCT>TCT	p.P1744S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1744	Extracellular (Potential).|59 X approximate tandem repeats.|27.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAACTCAACTCCTAGTGAAGG	0.493													183	543					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100684180	100684180	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100684180A>G	uc003uxp.1	+	3	9536	c.9483A>G	c.(9481-9483)GAA>GAG	p.E3161E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3161	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTCCTAGTGAAGGAAGTACTC	0.493													216	499					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100685120	100685120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100685120G>A	uc003uxp.1	+	3	10476	c.10423G>A	c.(10423-10425)GCT>ACT	p.A3475T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3475	Extracellular (Potential).|Ser-rich.|56.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGTTCTGAGGCTAGCACCCT	0.498													227	473					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100691290	100691290	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:100691290G>A	uc003uxp.1	+	4	12482	c.12429G>A	c.(12427-12429)ACG>ACA	p.T4143T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4143	Extracellular (Potential).|EGF-like.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCAGAATACGGCCTCTCGCT	0.532													50	135					0	0	0.014410	0	0
LRWD1	222229	broad.mit.edu	37	7	102113410	102113410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:102113410G>A	uc003uzn.2	+	15	1996	c.1858G>A	c.(1858-1860)GTG>ATG	p.V620M	LRWD1_uc003uzo.2_Missense_Mutation_p.V468M	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	620	WD 5.				chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						CAAGACCATGGTGAACACAGT	0.632													49	134					0	0	0.014410	0	0
EIF3IP1	442720	broad.mit.edu	37	7	109599808	109599808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:109599808G>A	uc003vfp.1	-	1	463	c.290C>T	c.(289-291)TCT>TTT	p.S97F		NR_003024				Homo sapiens eukaryotic translation initiation factor 3, subunit I pseudogene 1 (EIF3IP1), non-coding RNA.												0						AGTGATTTTAGAGTCACTGCA	0.498													12	25					0	0	0.010729	0	0
C7orf60	154743	broad.mit.edu	37	7	112461985	112461985	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:112461985G>A	uc003vgo.1	-	5	1159	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	C7orf60_uc011kms.1_Silent_p.F370F	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	344										ovary(2)|skin(1)	3						CTATACTGTTGAAATCTTGAG	0.303													12	21					0	0	0.013537	0	0
CFTR	1080	broad.mit.edu	37	7	117232711	117232711	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:117232711G>A	uc003vjd.2	+	14	2622	c.2490G>A	c.(2488-2490)AAG>AAA	p.K830K	CFTR_uc011knq.1_Silent_p.K236K	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	830	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AAGACTTAAAGGTAGGTATAC	0.363									Cystic_Fibrosis				25	72					0	0	0.006320	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652518	121652518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:121652518C>T	uc003vjy.2	+	12	3813	c.3418C>T	c.(3418-3420)CTT>TTT	p.L1140F	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1140	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TGACACTTCGCTTAAACCTGT	0.413													41	115					0	0	0.009718	0	0
HYAL4	23553	broad.mit.edu	37	7	123508613	123508613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:123508613G>A	uc003vlc.2	+	3	924	c.286G>A	c.(286-288)GGA>AGA	p.G96R	HYAL4_uc011knz.1_Missense_Mutation_p.G96R	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	96	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						CAACAGATTGGGATACTATCC	0.398													38	90					0	0	0.008740	0	0
FLNC	2318	broad.mit.edu	37	7	128491636	128491636	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:128491636C>T	uc003vnz.3	+	35	6005	c.5796C>T	c.(5794-5796)TTC>TTT	p.F1932F	FLNC_uc003voa.3_Silent_p.F1899F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1932	Filamin 17.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCGTGCGCTTCGATGACAAGC	0.577													44	114					0	0	0.014410	0	0
CPA5	93979	broad.mit.edu	37	7	130007340	130007340	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:130007340C>T	uc010lmd.1	+	12	1586	c.966C>T	c.(964-966)ATC>ATT	p.I322I	CPA5_uc003vps.2_Silent_p.I322I|CPA5_uc003vpt.2_Silent_p.I322I|CPA5_uc010lme.1_Silent_p.I322I|CPA5_uc003vpu.1_Silent_p.I322I|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	322					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					TGATCTCCATCCACAGCTACT	0.557													59	166					0	0	0.014410	0	0
MEST	4232	broad.mit.edu	37	7	130138042	130138042	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:130138042G>A	uc003vqg.2	+	5	619	c.402G>A	c.(400-402)CTG>CTA	p.L134L	MEST_uc003vqc.2_Silent_p.L125L|MEST_uc003vqd.2_Silent_p.L125L|MEST_uc003vqf.2_Silent_p.L125L|MEST_uc011kph.1_Silent_p.L120L|MEST_uc010lmg.2_Silent_p.L134L	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	134					mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					TGCGGCATCTGGGGCTCCAGA	0.493													139	392					0	0	0.014410	0	0
PLXNA4	91584	broad.mit.edu	37	7	131848931	131848931	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:131848931G>A	uc003vra.3	-	24	4699	c.4470C>T	c.(4468-4470)CTC>CTT	p.L1490L		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1490	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCTGGCGGATGAGCTTGTCCT	0.607													20	68					0	0	0.014323	0	0
PLXNA4	91584	broad.mit.edu	37	7	131912304	131912304	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:131912304C>T	uc003vra.3	-	7	2017	c.1788G>A	c.(1786-1788)GAG>GAA	p.E596E		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	596	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CTGACAGGTCCTCAAAGGTGC	0.597													23	59					0	0	0.016522	0	0
EXOC4	60412	broad.mit.edu	37	7	132937894	132937894	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:132937894A>C	uc003vrk.2	+	1	72	c.37A>C	c.(37-39)ACA>CCA	p.T13P	EXOC4_uc011kpo.1_5'Flank|EXOC4_uc003vri.2_Missense_Mutation_p.T13P|EXOC4_uc003vrj.2_Missense_Mutation_p.T13P	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	13					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				ATACAGAAGCACAGTCAGCAA	0.597													45	128					0	0	0.014410	0	0
EXOC4	60412	broad.mit.edu	37	7	133041196	133041196	+	Silent	SNP	C	T	T	rs35224977	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:133041196C>T	uc003vrk.2	+	6	911	c.876C>T	c.(874-876)ATC>ATT	p.I292I	EXOC4_uc011kpo.1_Silent_p.I191I|EXOC4_uc003vri.2_Silent_p.I292I|EXOC4_uc003vrj.2_Silent_p.I292I	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	292					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TGAAGAAGATCCCAGAAACAG	0.473													18	39					0	0	0.006122	0	0
EXOC4	60412	broad.mit.edu	37	7	133160140	133160140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:133160140C>T	uc003vrk.2	+	8	1276	c.1241C>T	c.(1240-1242)GCT>GTT	p.A414V	EXOC4_uc011kpo.1_Missense_Mutation_p.A313V|EXOC4_uc003vri.2_Missense_Mutation_p.A414V|EXOC4_uc003vrj.2_Missense_Mutation_p.A414V	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	414					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				GAACCATCAGCTCAACTAAGC	0.368													37	117					0	0	0.027894	0	0
CHRM2	1129	broad.mit.edu	37	7	136700491	136700491	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:136700491C>T	uc003vtf.1	+	4	1502	c.879C>T	c.(877-879)GCC>GCT	p.A293A	CHRM2_uc003vtg.1_Silent_p.A293A|CHRM2_uc003vtj.1_Silent_p.A293A|CHRM2_uc003vtk.1_Silent_p.A293A|CHRM2_uc003vtl.1_Silent_p.A293A|CHRM2_uc003vtm.1_Silent_p.A293A|CHRM2_uc003vti.1_Silent_p.A293A|CHRM2_uc003vto.1_Silent_p.A293A|CHRM2_uc003vtn.1_Silent_p.A293A|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	293	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GTGCTGTTGCCTCTAATATGA	0.473													9	35					0	0	0.006214	0	0
DGKI	9162	broad.mit.edu	37	7	137150693	137150693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:137150693G>A	uc003vtt.2	-	27	2598	c.2597C>T	c.(2596-2598)CCT>CTT	p.P866L	DGKI_uc003vtu.2_Missense_Mutation_p.P576L	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	866					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CATGCCCGGAGGTGTCCCCGC	0.542													34	73					0	0	0.013726	0	0
TTC26	79989	broad.mit.edu	37	7	138874089	138874089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:138874089C>T	uc003vus.2	+	18	1690	c.1576C>T	c.(1576-1578)CAT>TAT	p.H526Y	TTC26_uc011kqn.1_Missense_Mutation_p.P481L|TTC26_uc011kqo.1_Missense_Mutation_p.H495Y|TTC26_uc011kqp.1_Missense_Mutation_p.H421Y|TTC26_uc003vut.2_Missense_Mutation_p.H386Y|TTC26_uc011kqq.1_Missense_Mutation_p.H395Y	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	526							binding			ovary(1)	1						AGAAGTGCTCCATTTACTGAG	0.378													142	273					0	0	0.014410	0	0
HIPK2	28996	broad.mit.edu	37	7	139257822	139257822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:139257822G>A	uc003vvf.3	-	15	3622	c.3448C>T	c.(3448-3450)CCC>TCC	p.P1150S	HIPK2_uc003vvd.3_Missense_Mutation_p.P1123S	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	1150	Autoinhibitory domain (AID).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					AGGACCCGGGGGCCCATGCTC	0.677													13	36					0	0	0.013537	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				26	55					0	0	0.027356	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464316	141464316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141464316C>T	uc003vwp.1	+	1	420	c.358C>T	c.(358-360)CTC>TTC	p.L120F		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	120	Cytoplasmic (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					CCCCACATTCCTCTGGCTCAA	0.478													74	177					0	0	0.014410	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464375	141464375	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141464375C>T	uc003vwp.1	+	1	479	c.417C>T	c.(415-417)CTC>CTT	p.L139L		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	139	Helical; Name=4; (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					GTGCACTGCTCTTATCCTGTG	0.473													44	99					0	0	0.009718	0	0
CLEC5A	23601	broad.mit.edu	37	7	141629994	141629994	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141629994G>A	uc003vwv.1	-	7	674	c.477C>T	c.(475-477)TTC>TTT	p.F159F	CLEC5A_uc011krm.1_Missense_Mutation_p.S135L|CLEC5A_uc003vww.1_Silent_p.F158F|CLEC5A_uc010lnq.1_Silent_p.F136F|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	159	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TCGCACAGTTGAAATTCTGAT	0.348													30	66					0	0	0.010818	0	0
CLEC5A	23601	broad.mit.edu	37	7	141646064	141646064	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141646064A>G	uc003vwv.1	-	2	226	c.29T>C	c.(28-30)CTT>CCT	p.L10P	CLEC5A_uc011krm.1_Missense_Mutation_p.L10P|CLEC5A_uc003vww.1_Missense_Mutation_p.L10P|CLEC5A_uc010lnq.1_Missense_Mutation_p.L10P|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	10	Helical; Signal-anchor for type II membrane protein; (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TACCACAATAAGCCCAGAGAT	0.443													2	5					0	0	0.004672	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673292	141673292	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141673292G>A	uc003vwx.1	-	1	282	c.198C>T	c.(196-198)TTC>TTT	p.F66F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	66	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					GTCCATGCAGGAAAAGCCGGC	0.493													35	102					0	0	0.015359	0	0
MGAM	8972	broad.mit.edu	37	7	141734488	141734488	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141734488C>T	uc003vwy.2	+	16	1860	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	602	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGACTGTGTTCCCTAATAAGA	0.488													10	20					0	0	0.010729	0	0
MGAM	8972	broad.mit.edu	37	7	141740634	141740634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:141740634C>T	uc003vwy.2	+	21	2540	c.2486C>T	c.(2485-2487)ACC>ATC	p.T829I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	829	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCAAATACAACCACTCTGGCC	0.448													14	31					0	0	0.020292	0	0
TRY6	154754	broad.mit.edu	37	7	142481280	142481280	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142481280C>T	uc011ksq.1	+	3	437	c.354C>T	c.(352-354)GTC>GTT	p.V118V	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CACCTGCCGTCATCAATGCCC	0.547													27	63					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	7	142498826	142498826	+	RNA	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142498826G>A	uc011ksh.1	+	3		c.205G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.G81S|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		CCTGGCCACAGGCTTCTACCC	0.617													36	179					0	0	0.023175	0	0
EPHB6	2051	broad.mit.edu	37	7	142562484	142562484	+	Missense_Mutation	SNP	G	A	A	rs55728646	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142562484G>A	uc011kst.1	+	7	1713	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	EPHB6_uc011ksu.1_Missense_Mutation_p.R309Q|EPHB6_uc003wbs.2_Missense_Mutation_p.R17Q|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.R17Q|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	309	Extracellular (Potential).|Cys-rich.		R -> Q.			extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CAACCAGCACGAGGAGACAAG	0.657													60	116					0	0	0.014410	0	0
TRPV5	56302	broad.mit.edu	37	7	142609744	142609744	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142609744G>A	uc003wby.1	-	13	1956	c.1692C>T	c.(1690-1692)ATC>ATT	p.I564I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	564	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GTGTGGCAATGATGGCGAAGG	0.542													51	131					0	0	0.014410	0	0
TRPV5	56302	broad.mit.edu	37	7	142609750	142609750	+	Silent	SNP	G	A	A	rs4252498		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142609750G>A	uc003wby.1	-	13	1950	c.1686C>T	c.(1684-1686)TTC>TTT	p.F562F		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	562	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CAATGATGGCGAAGGCGAAGT	0.542													58	124					0	0	0.014410	0	0
TRPV5	56302	broad.mit.edu	37	7	142630544	142630544	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:142630544G>A	uc003wby.1	-	1	277	c.13C>T	c.(13-15)CTA>TTA	p.L5L	TRPV5_uc003wbz.2_Silent_p.L5L	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	5	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCCTTAGGTAGAAAACCCCCC	0.512													62	145					0	0	0.014410	0	0
CLCN1	1180	broad.mit.edu	37	7	143028384	143028384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143028384G>A	uc003wcr.1	+	9	1126	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	CLCN1_uc011ktc.1_Missense_Mutation_p.E9K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	347					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TGACCTGAAGGAACTACCAGC	0.517													51	104					0	0	0.014410	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140715	143140715	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143140715A>G	uc011ktg.1	+	1	170	c.170A>G	c.(169-171)AAG>AGG	p.K57R	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	57	Helical; Name=2; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					CCTTGTGATAAGTTATTGGTT	0.493													31	76					0	0	0.008361	0	0
OR2F2	135948	broad.mit.edu	37	7	143633246	143633246	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143633246A>T	uc011ktv.1	+	1	921	c.921A>T	c.(919-921)AAA>AAT	p.K307N		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TATTAGAGAAATTCTCTGGGT	0.428													34	63					0	0	0.017118	0	0
OR2F1	26211	broad.mit.edu	37	7	143657596	143657596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143657596C>T	uc003wds.1	+	1	577	c.533C>T	c.(532-534)TCC>TTC	p.S178F		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					GATCACATATCCTGTGAACTC	0.502													22	75					0	0	0.014323	0	0
OR2A25	392138	broad.mit.edu	37	7	143771752	143771752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143771752C>T	uc011ktx.1	+	1	440	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GCATTGACTTCCTGGATTTTA	0.463													72	163					0	0	0.014410	0	0
OR2A12	346525	broad.mit.edu	37	7	143792847	143792847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:143792847C>T	uc011kty.1	+	1	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GTGCTGGTCTCCTACTTGCAC	0.582													76	233					0	0	0.014410	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144075882	144075882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:144075882C>T	uc003wel.2	+	14	4677	c.4559C>T	c.(4558-4560)GCC>GTC	p.A1520V	ARHGEF5_uc003wem.2_Missense_Mutation_p.A321V	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1520	SH3.				intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					TGCCTTCGAGCCTACAAGCCC	0.562													88	234					0	0	0.014410	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112591	148112591	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:148112591C>T	uc003weu.1	+	24	4395	c.3879C>T	c.(3877-3879)TAC>TAT	p.Y1293Y	CNTNAP2_uc003wev.1_Silent_p.Y70Y	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1293	Cytoplasmic (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGGCACCTACCATACCAACG	0.547										HNSCC(39;0.1)			29	76					0	0	0.009535	0	0
ZNF786	136051	broad.mit.edu	37	7	148768478	148768478	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:148768478G>A	uc003wfh.2	-	4	1523	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	ZNF786_uc011kuk.1_Silent_p.F425F|ZNF786_uc003wfi.2_Silent_p.F376F	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	462	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCCTCTGACGGAAGTTCCTGC	0.612													12	46					0	0	0.013537	0	0
ZNF425	155054	broad.mit.edu	37	7	148802413	148802413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:148802413G>A	uc003wfj.2	-	4	623	c.550C>T	c.(550-552)CCC>TCC	p.P184S		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	184					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GGCCCTGTGGGAATTTCTAAG	0.478													35	97					0	0	0.012213	0	0
ZNF282	8427	broad.mit.edu	37	7	148895756	148895756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:148895756G>A	uc003wfm.2	+	2	602	c.497G>A	c.(496-498)AGG>AAG	p.R166K	ZNF282_uc011kun.1_Missense_Mutation_p.R166K|ZNF282_uc003wfn.2_Missense_Mutation_p.R106K|ZNF282_uc003wfo.2_Missense_Mutation_p.R106K	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	166					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		CTGCTGCAGAGGCGGCTGGAG	0.637													69	176					0	0	0.014410	0	0
ZNF212	7988	broad.mit.edu	37	7	148951428	148951428	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:148951428C>T	uc003wfp.2	+	5	1506	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	470	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			AGCAGCACCTCCTGCAGCACC	0.647													48	129					0	0	0.014410	0	0
SSPO	23145	broad.mit.edu	37	7	149481963	149481963	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149481963C>A	uc010lpk.2	+	19	2753	c.2753C>A	c.(2752-2754)CCT>CAT	p.P918H	SSPO_uc010lpl.1_Missense_Mutation_p.P253H	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	918	VWFC 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CGCCACTGCCCTTCACAGGGG	0.617													44	157					2.01872e-29	2.06018e-29	0.014410	1	0
SSPO	23145	broad.mit.edu	37	7	149483265	149483265	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149483265C>T	uc010lpk.2	+	23	3333	c.3333C>T	c.(3331-3333)TTC>TTT	p.F1111F	SSPO_uc010lpl.1_Silent_p.F361F	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1111	VWFD 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGGCCTCTTCCTGCTGCTCT	0.657													7	14					0	0	0.003080	0	0
SSPO	23145	broad.mit.edu	37	7	149490419	149490419	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149490419G>A	uc010lpk.2	+	40	5895	c.5895G>A	c.(5893-5895)GAG>GAA	p.E1965E		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1965	VWFC 2.|TSP type-1 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AGCCCTGTGAGGGGTGTGAGC	0.547													21	51					0	0	0.018920	0	0
SSPO	23145	broad.mit.edu	37	7	149506159	149506159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149506159C>T	uc010lpk.2	+	64	9151	c.9151C>T	c.(9151-9153)CCG>TCG	p.P3051S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3051	TSP type-1 10.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCTTGGTCTCCGTGCTCCGT	0.687													12	27					0	0	0.016723	0	0
SSPO	23145	broad.mit.edu	37	7	149516415	149516415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149516415C>T	uc010lpk.2	+	85	11818	c.11818C>T	c.(11818-11820)CCT>TCT	p.P3940S	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3940					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGCCCTGGCCCTGGCTGTGG	0.682													15	45					0	0	0.020292	0	0
SSPO	23145	broad.mit.edu	37	7	149521696	149521696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:149521696C>T	uc010lpk.2	+	96	13775	c.13775C>T	c.(13774-13776)GCC>GTC	p.A4592V	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4592					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGGACTGGAGCCCCTCACCTC	0.697													17	29					0	0	0.004990	0	0
RARRES2	5919	broad.mit.edu	37	7	150037191	150037191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:150037191C>T	uc003wha.2	-	3	394	c.277G>A	c.(277-279)GGG>AGG	p.G93R	RARRES2_uc010lpp.1_Missense_Mutation_p.G93R	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	93					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TCACTCACCCCATTGGGCCTG	0.567													229	643					0	0	0.014410	0	0
GIMAP6	474344	broad.mit.edu	37	7	150324823	150324823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:150324823C>T	uc003whn.2	-	3	1287	c.863G>A	c.(862-864)GGG>GAG	p.G288E	GIMAP6_uc003whm.2_Missense_Mutation_p.G208E	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	288							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTCAGCCTTCCCCAGCAGGCA	0.587													34	108					0	0	0.021022	0	0
ATG9B	285973	broad.mit.edu	37	7	150721147	150721147	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:150721147G>A	uc011kvc.1	-	1	440	c.364C>T	c.(364-366)CTG>TTG	p.L122L	ATG9B_uc003wig.3_5'Flank	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	122	Pro-rich.|Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCGGGGCCAGGGGTGGGGTG	0.647													9	26					0	0	0.004482	0	0
FASTK	10922	broad.mit.edu	37	7	150776851	150776851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:150776851G>A	uc003wix.1	-	2	339	c.241C>T	c.(241-243)CCT>TCT	p.P81S	FASTK_uc003wiw.1_Intron|FASTK_uc003wiy.1_Intron|FASTK_uc003wiz.1_Missense_Mutation_p.P81S|FASTK_uc003wja.1_Missense_Mutation_p.P47S	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	81					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		CCTTGCACAGGACCTGCACTG	0.667													5	17					0	0	0.014758	0	0
MLL3	58508	broad.mit.edu	37	7	151874091	151874091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:151874091G>A	uc003wla.2	-	38	8666	c.8447C>T	c.(8446-8448)TCC>TTC	p.S2816F	MLL3_uc003wkz.2_Missense_Mutation_p.S1877F|MLL3_uc003wky.2_Missense_Mutation_p.S325F	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2816					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGTAACAGTGGATTTTTTCTG	0.323			N		medulloblastoma								46	103					0	0	0.013114	0	0
RNF32	140545	broad.mit.edu	37	7	156437203	156437203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:156437203C>T	uc003wmo.2	+	3	208	c.26C>T	c.(25-27)TCT>TTT	p.S9F	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Missense_Mutation_p.S9F|RNF32_uc003wmp.2_Missense_Mutation_p.S9F|RNF32_uc003wmq.2_Missense_Mutation_p.S9F|RNF32_uc003wmr.2_Missense_Mutation_p.S9F|RNF32_uc003wms.2_Missense_Mutation_p.S9F|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Missense_Mutation_p.S9F	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	9						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		GGTCACTCATCTAAGAAAGAT	0.333													27	106					0	0	0.009535	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1846599	1846599	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:1846599C>A	uc003wpr.2	+	15	1736	c.1558C>A	c.(1558-1560)CAG>AAG	p.Q520K	ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Missense_Mutation_p.Q482K|ARHGEF10_uc003wpt.2_Missense_Mutation_p.Q396K|ARHGEF10_uc003wpv.2_Missense_Mutation_p.Q253K|ARHGEF10_uc010lre.2_Missense_Mutation_p.Q200K	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	545	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TCCCCCACAGCAGGAACAGGA	0.642													10	56					3.86212e-05	3.9079e-05	0.008291	1	0
MYOM2	9172	broad.mit.edu	37	8	2033485	2033485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2033485C>T	uc003wpx.3	+	14	1745	c.1607C>T	c.(1606-1608)CCC>CTC	p.P536L	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	536	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCACCCACTCCCCGTGGCAAG	0.587													15	54					0	0	0.024245	0	0
MYOM2	9172	broad.mit.edu	37	8	2037960	2037960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2037960G>A	uc003wpx.3	+	15	1912	c.1774G>A	c.(1774-1776)GGC>AGC	p.G592S	MYOM2_uc011kwi.1_Missense_Mutation_p.G17S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	592	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAACCGGCATGGCCTGAGCGA	0.572													29	70					0	0	0.008361	0	0
MYOM2	9172	broad.mit.edu	37	8	2044132	2044132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2044132G>A	uc003wpx.3	+	18	2309	c.2171G>A	c.(2170-2172)GGC>GAC	p.G724D	MYOM2_uc011kwi.1_Missense_Mutation_p.G149D	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	724	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AACTGTGACGGCCACTCCATG	0.577													71	139					0	0	0.014410	0	0
MYOM2	9172	broad.mit.edu	37	8	2046756	2046756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2046756G>A	uc003wpx.3	+	19	2521	c.2383G>A	c.(2383-2385)GAG>AAG	p.E795K	MYOM2_uc011kwi.1_Missense_Mutation_p.E220K	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	795	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CGGCATCGGGGAGCCCTCAGA	0.582													7	33					0	0	0.003080	0	0
MYOM2	9172	broad.mit.edu	37	8	2088741	2088741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2088741G>A	uc003wpx.3	+	33	4034	c.3896G>A	c.(3895-3897)GGA>GAA	p.G1299E	MYOM2_uc011kwi.1_Missense_Mutation_p.G724E	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1299					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAGGATAAAGGAAAATACACT	0.428													19	122					0	0	0.007413	0	0
CSMD1	64478	broad.mit.edu	37	8	2855633	2855633	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:2855633G>A	uc011kwk.1	-	54	8670	c.8280C>T	c.(8278-8280)GTC>GTT	p.V2760V	CSMD1_uc011kwj.1_Silent_p.V2089V|CSMD1_uc010lrg.2_Silent_p.V770V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2760	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGAAATTCACGACATCATTCA	0.557													26	66					0	0	0.024334	0	0
CSMD1	64478	broad.mit.edu	37	8	3047446	3047446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:3047446G>A	uc011kwk.1	-	34	5779	c.5389C>T	c.(5389-5391)CCC>TCC	p.P1797S	CSMD1_uc011kwj.1_Missense_Mutation_p.P1189S|CSMD1_uc003wqe.2_Missense_Mutation_p.P953S|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1797	Sushi 10.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ACACAGCTGGGGATCGTGTCG	0.587													3	11					0	0	0.009096	0	0
CSMD1	64478	broad.mit.edu	37	8	3224691	3224691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:3224691G>A	uc011kwk.1	-	20	3371	c.2981C>T	c.(2980-2982)TCC>TTC	p.S994F	CSMD1_uc011kwj.1_Missense_Mutation_p.S386F|CSMD1_uc003wqe.2_Missense_Mutation_p.S150F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	994	Extracellular (Potential).|CUB 6.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AACGGGCTCGGAAAAACTTCC	0.488													8	13					0	0	0.003080	0	0
MCPH1	79648	broad.mit.edu	37	8	6302730	6302730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:6302730C>T	uc003wqi.2	+	8	1555	c.1487C>T	c.(1486-1488)TCG>TTG	p.S496L	MCPH1_uc003wqh.2_Missense_Mutation_p.S496L|MCPH1_uc011kwl.1_Missense_Mutation_p.S448L	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	496						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		CGTGCAACTTCGAGTTGCGTG	0.478													50	83					0	0	0.014410	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998818	8998818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:8998818G>A	uc003wsn.3	-	2	509	c.344C>T	c.(343-345)TCC>TTC	p.S115F	PPP1R3B_uc003wso.3_Missense_Mutation_p.S114F	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	115					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		AGAGGGCTGGGAAAAATCCAG	0.498													21	82					0	0	0.008871	0	0
RP1L1	94137	broad.mit.edu	37	8	10466107	10466107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:10466107C>T	uc003wtc.2	-	4	5730	c.5501G>A	c.(5500-5502)GGC>GAC	p.G1834D		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1834					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGCCTCTATGCCTTCGGCCCC	0.637													145	324					0	0	0.014410	0	0
RP1L1	94137	broad.mit.edu	37	8	10468130	10468130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:10468130C>T	uc003wtc.2	-	4	3707	c.3478G>A	c.(3478-3480)GGA>AGA	p.G1160R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1160					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACGTCACATCCTGGCCACAGG	0.577													23	81					0	0	0.014323	0	0
C8orf74	203076	broad.mit.edu	37	8	10555278	10555278	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:10555278G>A	uc003wtd.1	+	3	440	c.411G>A	c.(409-411)CTG>CTA	p.L137L	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	137											0				COAD - Colon adenocarcinoma(149;0.0811)		AGGTCGACCTGACCGTTGCCC	0.632													69	273					0	0	0.014410	0	0
SOX7	83595	broad.mit.edu	37	8	10583914	10583914	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:10583914G>A	uc003wtf.2	-	2	580	c.501C>T	c.(499-501)CCC>CCT	p.P167P	SOX7_uc011kwz.1_Silent_p.P219P|uc003wtg.1_5'Flank	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	167					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		GGGCAGTGCCGGGGGAGTACT	0.726													15	42					0	0	0.020292	0	0
XKR6	286046	broad.mit.edu	37	8	10755610	10755610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:10755610C>T	uc003wtk.1	-	3	1805	c.1778G>A	c.(1777-1779)CGA>CAA	p.R593Q		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	593						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		AGCTGGGTATCGCTTTCTTGG	0.517													32	67					0	0	0.010818	0	0
USP17L2	377630	broad.mit.edu	37	8	11995291	11995291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:11995291C>T	uc003wvc.1	-	1	979	c.979G>A	c.(979-981)GGG>AGG	p.G327R	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	327					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CAACTCCACCCAGCGTGGACC	0.488													12	59					0	0	0.016723	0	0
MSR1	4481	broad.mit.edu	37	8	15967683	15967683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:15967683C>T	uc003wwz.2	-	10	1465	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	MSR1_uc010lsu.2_Missense_Mutation_p.E441K|MSR1_uc003wxa.2_Missense_Mutation_p.E360K	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	423	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATAGATGATTCTCTCCCAAAA	0.373													16	75					0	0	0.004990	0	0
MSR1	4481	broad.mit.edu	37	8	15978113	15978113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:15978113G>A	uc003wwz.2	-	9	1234	c.1036C>T	c.(1036-1038)CCA>TCA	p.P346S	MSR1_uc010lsu.2_Missense_Mutation_p.P364S|MSR1_uc003wxa.2_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	346	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TTCGTAAATGGAGCTGTAAAG	0.413													20	31					0	0	0.008871	0	0
SLC7A2	6542	broad.mit.edu	37	8	17419559	17419559	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:17419559C>T	uc011kyc.1	+	10	1780	c.1611C>T	c.(1609-1611)TTC>TTT	p.F537F	SLC7A2_uc011kyd.1_Silent_p.F576F|SLC7A2_uc011kye.1_Silent_p.F577F|SLC7A2_uc011kyf.1_Silent_p.F537F	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	537	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TTGTTCTCTTCGTTGCCATCG	0.512													9	66					0	0	0.008291	0	0
PDGFRL	5157	broad.mit.edu	37	8	17486116	17486116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:17486116G>A	uc003wxr.2	+	4	687	c.626G>A	c.(625-627)AGG>AAG	p.R209K		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	209						extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		ACGCTCCACAGGGAATTCCCA	0.547													45	103					0	0	0.009718	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19266161	19266161	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:19266161C>T	uc011kyn.1	-	9	2336	c.1272G>A	c.(1270-1272)GGG>GGA	p.G424G	CSGALNACT1_uc011kyo.1_Silent_p.G424G|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Silent_p.G423G	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	424	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		GACACGTCATCCCAAATCCAA	0.458													20	124					0	0	0.012319	0	0
LPL	4023	broad.mit.edu	37	8	19816795	19816795	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:19816795A>C	uc003wzk.3	+	7	1413	c.1043A>C	c.(1042-1044)CAT>CCT	p.H348P		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	348	PLAT.|Heparin-binding (By similarity).				fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	GTAAAGATTCATTTTTCTGGG	0.423													15	26					0	0	0.004990	0	0
SLC18A1	6570	broad.mit.edu	37	8	20028990	20028990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:20028990C>T	uc011kyq.1	-	8	1211	c.740G>A	c.(739-741)GGA>GAA	p.G247E	SLC18A1_uc003wzl.2_Missense_Mutation_p.G34E|SLC18A1_uc003wzm.2_Missense_Mutation_p.G247E|SLC18A1_uc011kyr.1_Missense_Mutation_p.G247E|SLC18A1_uc003wzn.2_Missense_Mutation_p.G247E|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.G247E	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	247	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		CATTACACTTCCAAAGGGAGC	0.502													33	104					0	0	0.015359	0	0
GFRA2	2675	broad.mit.edu	37	8	21563530	21563530	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:21563530G>C	uc003wzu.1	-	5	1493	c.818C>G	c.(817-819)GCC>GGC	p.A273G	GFRA2_uc003wzv.1_Missense_Mutation_p.A168G|GFRA2_uc003wzw.1_Missense_Mutation_p.A140G	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	273						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		TCGACAATTGGCATGGAAGTC	0.567													4	11					0	0	0.009096	0	0
FGF17	8822	broad.mit.edu	37	8	21903803	21903803	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:21903803G>A	uc003xag.2	+	3	262	c.250_splice	c.e3+1	p.A84_splice	FGF17_uc003xah.2_Splice_Site_p.A73_splice|FGF17_uc003xai.2_Splice_Site_p.A107_splice	NM_003867	NP_003858	O60258	FGF17_HUMAN	fibroblast growth factor 17 precursor						cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|nervous system development	extracellular space	growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0				Colorectal(74;8.48e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0618)		AACAAGTTTGGTGAGAGTTGG	0.642													42	57					0	0	0.007835	0	0
HR	55806	broad.mit.edu	37	8	21977866	21977866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:21977866G>A	uc003xas.2	-	12	3430	c.2765C>T	c.(2764-2766)TCC>TTC	p.S922F	HR_uc003xat.2_Missense_Mutation_p.S922F	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	922							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CTCAGGCCAGGAGAAGCCCTC	0.677													22	97					0	0	0.027356	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23058222	23058222	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:23058222G>A	uc003xda.2	-	5	746	c.681C>T	c.(679-681)ATC>ATT	p.I227I		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	227	TNFR-Cys 3.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		GGACACACTCGATGTCACTCC	0.587													40	175					0	0	0.009718	0	0
CHMP7	91782	broad.mit.edu	37	8	23106782	23106783	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:23106782_23106783CC>TT	uc003xdc.2	+	3	1007_1008	c.359_360CC>TT	c.(358-360)TCC>TTT	p.S120F	CHMP7_uc011kzs.1_Intron|CHMP7_uc003xdd.2_Missense_Mutation_p.S10F	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	120					cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		AGCTGGATCTCCTGGGGGGTTG	0.545													50	107					0	0	0.004672	0	0
ADAM28	10863	broad.mit.edu	37	8	24199248	24199248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:24199248G>A	uc003xdy.2	+	16	1891	c.1808G>A	c.(1807-1809)GGA>GAA	p.G603E	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G290E	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	603	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GTGGCCAATGGAACTAAGTGT	0.403													8	73					0	0	0.004482	0	0
ADAM7	8756	broad.mit.edu	37	8	24358371	24358371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:24358371C>T	uc003xeb.2	+	19	2184	c.2071C>T	c.(2071-2073)CGT>TGT	p.R691C	ADAM7_uc003xec.2_Missense_Mutation_p.R463C	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	691	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding	p.R691H(1)		skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ACTATTAGTTCGTTACCGAAA	0.373													26	62					0	0	0.027356	0	0
TRIM35	23087	broad.mit.edu	37	8	27145626	27145626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:27145626G>A	uc003xfl.1	-	6	1005	c.923C>T	c.(922-924)CCC>CTC	p.P308L	TRIM35_uc010lup.1_3'UTR	NM_171982	NP_741983	Q9UPQ4	TRI35_HUMAN	tripartite motif-containing 35 isoform 2	308	B30.2/SPRY.				apoptosis|induction of apoptosis|negative regulation of mitotic cell cycle	cytoplasm|nucleus	zinc ion binding				0		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|Epithelial(17;9.34e-10)|Colorectal(74;0.141)		TGCGGTGTTGGGGTCAAAGCT	0.597													39	65					0	0	0.025465	0	0
C8orf80	389643	broad.mit.edu	37	8	27903173	27903173	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:27903173G>A	uc003xgm.3	-	12	1460	c.1317C>T	c.(1315-1317)ATC>ATT	p.I439I		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	439						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		TTAACTTAGGGATTTCTGGAA	0.418													55	144					0	0	0.014410	0	0
EXTL3	2137	broad.mit.edu	37	8	28575121	28575121	+	Silent	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:28575121C>A	uc003xgz.1	+	3	2138	c.1545C>A	c.(1543-1545)CTC>CTA	p.L515L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	515	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GCCGCTTTCTCTGGGAGACTT	0.552													30	97					1.08312e-15	1.10165e-15	0.009535	1	0
GOT1L1	137362	broad.mit.edu	37	8	37791993	37791993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:37791993C>T	uc011lbj.1	-	9	1184	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	362					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			ACCAGGTATTCCACCTGCTGG	0.418													80	169					0	0	0.014410	0	0
ADAM2	2515	broad.mit.edu	37	8	39644532	39644532	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:39644532C>T	uc003xnj.2	-	10	927	c.852G>A	c.(850-852)GGG>GGA	p.G284G	ADAM2_uc003xnk.2_Silent_p.G265G|ADAM2_uc011lck.1_Silent_p.G284G|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	284	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CACACATCTTCCCTTGAAAGG	0.284													7	34					0	0	0.001984	0	0
IDO2	169355	broad.mit.edu	37	8	39806702	39806702	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:39806702G>A	uc010lwy.1	+	2	299	c.57G>A	c.(55-57)CCG>CCA	p.P19P	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	6					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CCCACAGACCGAATGTGAAGA	0.408													8	11					0	0	0.006214	0	0
IDO2	169355	broad.mit.edu	37	8	39840215	39840215	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:39840215G>A	uc010lwy.1	+	5	641	c.399G>A	c.(397-399)AGG>AGA	p.R133R	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Intron	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	120					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						AAGTCTCCAGGAACTTGGGGC	0.468													11	23					0	0	0.010729	0	0
MYST3	7994	broad.mit.edu	37	8	41790352	41790352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:41790352G>A	uc010lxb.2	-	18	5930	c.5386C>T	c.(5386-5388)CCA>TCA	p.P1796S	MYST3_uc010lxc.2_Missense_Mutation_p.P1796S|MYST3_uc003xon.3_Missense_Mutation_p.P1796S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1796					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GGATGAGATGGAGCCAGCTGA	0.522													50	186					0	0	0.014410	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587468	42587468	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:42587468C>T	uc003xpi.1	+	5	1146	c.1018C>T	c.(1018-1020)CTG>TTG	p.L340L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	340	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GAGGCTCTTTCTGCAGAAACT	0.468													38	230					0	0	0.007835	0	0
HGSNAT	138050	broad.mit.edu	37	8	43025809	43025809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:43025809C>T	uc003xpx.3	+	7	763	c.715C>T	c.(715-717)CGC>TGC	p.R239C		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	267	Cytoplasmic (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			CCTGCCGCCCCGCCTCCGCAG	0.567													6	13					0	0	0.021553	0	0
SNTG1	54212	broad.mit.edu	37	8	51705277	51705277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:51705277C>T	uc010lxy.1	+	20	1813	c.1442C>T	c.(1441-1443)TCC>TTC	p.S481F	SNTG1_uc003xqs.1_Missense_Mutation_p.S481F|SNTG1_uc010lxz.1_Missense_Mutation_p.S444F|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	481					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TGCATTCATTCCTTCTTTGCT	0.388													8	38					0	0	0.004482	0	0
PXDNL	137902	broad.mit.edu	37	8	52359611	52359611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:52359611G>A	uc003xqu.3	-	12	1579	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	493	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CACCCCCAACGAACTGACTGC	0.468													40	210					0	0	0.013114	0	0
OPRK1	4986	broad.mit.edu	37	8	54142358	54142358	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:54142358G>A	uc003xrh.1	-	3	1017	c.642C>T	c.(640-642)TTC>TTT	p.F214F	OPRK1_uc003xri.1_Silent_p.F214F|OPRK1_uc010lyc.1_Silent_p.F125F	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	214	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CATCATCTGGGAACTGCAAGG	0.478													17	36					0	0	0.007413	0	0
RP1	6101	broad.mit.edu	37	8	55538174	55538174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:55538174G>A	uc003xsd.1	+	4	1880	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	578					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AATTGTGGAGGAAGATGTAGT	0.343													26	110					0	0	0.027356	0	0
PENK	5179	broad.mit.edu	37	8	57353899	57353899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:57353899C>T	uc003xsz.2	-	2	817	c.736G>A	c.(736-738)GAA>AAA	p.E246K	PENK_uc003xta.3_Missense_Mutation_p.E246K	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	246					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTTTCGCCTTCTTCGTCGGAG	0.493													93	147					0	0	0.014410	0	0
CLVS1	157807	broad.mit.edu	37	8	62289207	62289207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:62289207G>A	uc003xuh.2	+	3	823	c.499G>A	c.(499-501)GAA>AAA	p.E167K	CLVS1_uc003xug.2_Nonsense_Mutation_p.W165*|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.E167K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	167	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GCTGTCATTGGAAGTCCTAAT	0.443													28	68					0	0	0.027356	0	0
ARMC1	55156	broad.mit.edu	37	8	66517710	66517710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:66517710G>A	uc003xvl.2	-	5	764	c.529C>T	c.(529-531)CAA>TAA	p.Q177*	ARMC1_uc011leo.1_Nonsense_Mutation_p.Q75*	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	177					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			ACAGCCATTTGAAAAGTAAAG	0.328													11	59					0	0	0.010729	0	0
PREX2	80243	broad.mit.edu	37	8	68968209	68968209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:68968209G>A	uc003xxv.1	+	10	1265	c.1238G>A	c.(1237-1239)AGC>AAC	p.S413N	PREX2_uc003xxu.1_Missense_Mutation_p.S413N|PREX2_uc011lez.1_Missense_Mutation_p.S348N	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	413	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTTCTTGGAAGGTAGGGTTGG	0.373													12	84					0	0	0.013537	0	0
PREX2	80243	broad.mit.edu	37	8	68981328	68981328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:68981328G>A	uc003xxv.1	+	12	1427	c.1400G>A	c.(1399-1401)GGA>GAA	p.G467E	PREX2_uc003xxu.1_Missense_Mutation_p.G467E|PREX2_uc011lez.1_Missense_Mutation_p.G402E	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	467					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TATGATGATGGAACATTTTAT	0.338													10	38					0	0	0.006214	0	0
PREX2	80243	broad.mit.edu	37	8	68989631	68989631	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:68989631G>A	uc003xxv.1	+	15	1597	c.1570_splice	c.e15-1	p.G524_splice	PREX2_uc003xxu.1_Splice_Site_p.G524_splice|PREX2_uc011lez.1_Splice_Site_p.G459_splice	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a						G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTGGTTAACAGGGAGATTGCC	0.443													24	55					0	0	0.021523	0	0
PREX2	80243	broad.mit.edu	37	8	69030803	69030803	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:69030803G>A	uc003xxv.1	+	27	3372	c.3345G>A	c.(3343-3345)AGG>AGA	p.R1115R		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1115					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ACAGCAATAGGAATTCCATCG	0.463													49	90					0	0	0.014410	0	0
SULF1	23213	broad.mit.edu	37	8	70517105	70517105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:70517105G>A	uc010lza.1	+	13	2032	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	SULF1_uc003xyd.2_Missense_Mutation_p.E439K|SULF1_uc003xye.2_Missense_Mutation_p.E439K|SULF1_uc003xyf.2_Missense_Mutation_p.E439K|SULF1_uc003xyg.2_Missense_Mutation_p.E439K|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	439					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCCCAAATATGAACGGGTCAA	0.473													14	93					0	0	0.028581	0	0
EYA1	2138	broad.mit.edu	37	8	72111625	72111625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:72111625G>A	uc003xys.3	-	17	2016	c.1729C>T	c.(1729-1731)CAC>TAC	p.H577Y	EYA1_uc003xyr.3_Missense_Mutation_p.H542Y|EYA1_uc003xyt.3_Missense_Mutation_p.H544Y|EYA1_uc010lzf.2_Missense_Mutation_p.H504Y|EYA1_uc003xyu.2_Missense_Mutation_p.H577Y|EYA1_uc011lfe.1_Missense_Mutation_p.H571Y|EYA1_uc003xyv.2_Missense_Mutation_p.H455Y	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	577					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AGGTCCGAGTGGCTGGAGATC	0.587													3	22					0	0	0.009096	0	0
EYA1	2138	broad.mit.edu	37	8	72127655	72127655	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:72127655G>C	uc003xys.3	-	15	1851	c.1564C>G	c.(1564-1566)CCA>GCA	p.P522A	EYA1_uc003xyr.3_Missense_Mutation_p.P487A|EYA1_uc003xyt.3_Missense_Mutation_p.P489A|EYA1_uc010lzf.2_Missense_Mutation_p.P449A|EYA1_uc003xyu.2_Missense_Mutation_p.P522A|EYA1_uc011lfe.1_Missense_Mutation_p.P516A|EYA1_uc003xyv.2_Missense_Mutation_p.P400A	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	522					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			TTTTCTATTGGAAATACAATT	0.353													17	67					0	0	0.004990	0	0
KCNB2	9312	broad.mit.edu	37	8	73480497	73480497	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:73480497G>A	uc003xzb.2	+	2	1116	c.528G>A	c.(526-528)AGG>AGA	p.R176R		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	176	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CTGATAAAAGGAAGAAACTGT	0.443													34	97					0	0	0.015359	0	0
TERF1	7013	broad.mit.edu	37	8	73921227	73921227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:73921227G>A	uc003xzd.2	+	1	131	c.106G>A	c.(106-108)GAG>AAG	p.E36K	TERF1_uc003xzc.2_RNA|TERF1_uc003xze.2_Missense_Mutation_p.E36K	NM_017489	NP_059523	P54274	TERF1_HUMAN	telomeric repeat binding factor 1 isoform 1	36	Asp/Glu-rich (acidic).				age-dependent telomere shortening|cell division|G2/M transition of mitotic cell cycle|induction of apoptosis|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of telomere maintenance via semi-conservative replication|negative regulation of telomere maintenance via telomerase|positive regulation of microtubule polymerization|positive regulation of mitosis|positive regulation of mitotic cell cycle|protein homooligomerization|regulation of transcription, DNA-dependent|telomere maintenance via telomerase|telomere maintenance via telomerase|telomere maintenance via telomere shortening	chromosome, telomeric region|cytoplasm|nuclear telomere cap complex|nucleoplasm|nucleus|spindle	caspase activator activity|DNA bending activity|double-stranded telomeric DNA binding|identical protein binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|telomerase inhibitor activity|telomeric DNA binding			ovary(1)|lung(1)|skin(1)	3	Breast(64;0.218)		Epithelial(68;0.0984)			GAGAAACGACGAGGAGCAGTT	0.577													13	32					0	0	0.013537	0	0
PI15	51050	broad.mit.edu	37	8	75757424	75757424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:75757424C>T	uc003yal.2	+	4	633	c.454C>T	c.(454-456)CCA>TCA	p.P152S	uc003yak.1_Intron|PI15_uc003yam.2_Missense_Mutation_p.P152S	NM_015886	NP_056970	O43692	PI15_HUMAN	protease inhibitor 15 preproprotein	152						extracellular region	peptidase inhibitor activity			central_nervous_system(2)|ovary(1)	3	Breast(64;0.137)		BRCA - Breast invasive adenocarcinoma(89;0.104)|Epithelial(68;0.118)			TTATGCTTTTCCATATCCCCA	0.388													31	107					0	0	0.012213	0	0
CNGB3	54714	broad.mit.edu	37	8	87683207	87683207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:87683207C>T	uc003ydx.2	-	4	504	c.458G>A	c.(457-459)GGA>GAA	p.G153E	CNGB3_uc010maj.2_Missense_Mutation_p.G15E	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	153	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GGAGAGATCTCCCTCTACCAA	0.493													63	215					0	0	0.014410	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885042	88885043	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:88885042_88885043CC>TT	uc003ydz.2	-	1	1254_1255	c.1157_1158GG>AA	c.(1156-1158)CGG>CAA	p.R386Q		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	386										ovary(1)	1						AAAGGTCCTCCCGGACAGCCAT	0.55													18	42					0	0	0.004672	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885075	88885075	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:88885075G>A	uc003ydz.2	-	1	1222	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	375										ovary(1)	1						GTGCTCCTCGGAAGCCCCCGA	0.592													21	52					0	0	0.012319	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885827	88885827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:88885827G>A	uc003ydz.2	-	1	470	c.373C>T	c.(373-375)CGG>TGG	p.R125W		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	125										ovary(1)	1						TTCACCTTCCGATTAGGGACG	0.557													28	101					0	0	0.008361	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346565	92346565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:92346565G>A	uc003yex.2	+	7	963	c.685G>A	c.(685-687)GAA>AAA	p.E229K	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.E229K|SLC26A7_uc003yfa.2_Missense_Mutation_p.E229K	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	229	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TGTGCGACTGGAAGCATTGCT	0.333													17	38					0	0	0.004990	0	0
PLEKHF2	79666	broad.mit.edu	37	8	96166770	96166770	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:96166770C>T	uc003yhn.1	+	2	745	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	166	FYVE-type.					transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					AAGCAAAATTCACACCTGTTA	0.478													37	165					0	0	0.019004	0	0
GDF6	392255	broad.mit.edu	37	8	97156938	97156938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:97156938C>T	uc003yhp.2	-	2	1321	c.1221G>A	c.(1219-1221)ATG>ATA	p.M407I		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	407					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					CCATGGAGTTCATCAGCGTCT	0.612													18	48					0	0	0.010504	0	0
VPS13B	157680	broad.mit.edu	37	8	100128049	100128049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:100128049G>A	uc003yiv.2	+	7	995	c.884G>A	c.(883-885)GGC>GAC	p.G295D	VPS13B_uc003yiw.2_Missense_Mutation_p.G295D|VPS13B_uc003yit.2_Missense_Mutation_p.G295D|VPS13B_uc003yiu.1_Missense_Mutation_p.G295D|VPS13B_uc003yis.2_Missense_Mutation_p.G295D|VPS13B_uc011lgy.1_Missense_Mutation_p.G171D	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	295					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTTAAAGAAGGCGAAATAGAG	0.294													11	76					0	0	0.010729	0	0
VPS13B	157680	broad.mit.edu	37	8	100479699	100479699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:100479699G>A	uc003yiv.2	+	24	3614	c.3503G>A	c.(3502-3504)GGA>GAA	p.G1168E	VPS13B_uc003yiw.2_Missense_Mutation_p.G1168E|VPS13B_uc003yiu.1_Missense_Mutation_p.G1168E|VPS13B_uc003yix.1_Missense_Mutation_p.G638E	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1168					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			ACCCTTCTTGGAAAACAAGTG	0.443													44	113					0	0	0.014410	0	0
RGS22	26166	broad.mit.edu	37	8	100975140	100975140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:100975140C>T	uc003yjb.1	-	25	3877	c.3682G>A	c.(3682-3684)GAA>AAA	p.E1228K	RGS22_uc003yja.1_Missense_Mutation_p.E1047K|RGS22_uc003yjc.1_Missense_Mutation_p.E1216K	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1228					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TCTAGTTCTTCTTGGATCTTA	0.313													11	21					0	0	0.008291	0	0
SPAG1	6674	broad.mit.edu	37	8	101203629	101203629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:101203629C>T	uc003yjh.1	+	9	930	c.844C>T	c.(844-846)CGT>TGT	p.R282C	SPAG1_uc003yjg.1_Missense_Mutation_p.R282C|SPAG1_uc003yji.1_Missense_Mutation_p.R282C	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	282	TPR 3.				single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TCTTCTGCGTCGTGCTACTAC	0.363													11	62					0	0	0.010729	0	0
RIMS2	9699	broad.mit.edu	37	8	104709396	104709396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:104709396G>A	uc003ylp.2	+	2	398	c.259G>A	c.(259-261)GGT>AGT	p.G87S		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	118	FYVE-type.|RabBD.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGAACAGAAGGGTGATGCGCC	0.423										HNSCC(12;0.0054)			12	58					0	0	0.013537	0	0
LRP12	29967	broad.mit.edu	37	8	105509941	105509941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:105509941G>A	uc003yma.2	-	5	934	c.839C>T	c.(838-840)CCT>CTT	p.P280L	LRP12_uc003ymb.2_Missense_Mutation_p.P261L|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	280	Extracellular (Potential).|CUB 2.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GCTTCCAGGAGGATAAAAGTC	0.393													17	47					0	0	0.008871	0	0
ANGPT1	284	broad.mit.edu	37	8	108264161	108264161	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:108264161C>T	uc003ymn.2	-	9	1887	c.1419G>A	c.(1417-1419)GGG>GGA	p.G473G	ANGPT1_uc011lhv.1_Silent_p.G273G|ANGPT1_uc003ymo.2_Silent_p.G472G	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	473	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GCCACTTTATCCCATTCAGTT	0.408													37	84					0	0	0.025465	0	0
ANGPT1	284	broad.mit.edu	37	8	108334242	108334242	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:108334242G>A	uc003ymn.2	-	4	1158	c.690C>T	c.(688-690)ATC>ATT	p.I230I	ANGPT1_uc011lhv.1_Silent_p.I30I|ANGPT1_uc003ymo.2_Silent_p.I230I|ANGPT1_uc003ymp.3_Silent_p.I30I	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	230	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CCAGCTCCTGGATTATATATG	0.423													15	50					0	0	0.024245	0	0
RSPO2	340419	broad.mit.edu	37	8	108970443	108970443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:108970443G>A	uc003yms.2	-	5	1139	c.481C>T	c.(481-483)CGC>TGC	p.R161C	RSPO2_uc003ymq.2_Missense_Mutation_p.R94C|RSPO2_uc003ymr.2_Missense_Mutation_p.R97C	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	161	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CCACATGTGCGATTATTTCTG	0.383													27	55					0	0	0.006320	0	0
TRHR	7201	broad.mit.edu	37	8	110099751	110099751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110099751G>A	uc003ymz.3	+	1	26	c.10G>A	c.(10-12)GAG>AAG	p.E4K		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	4	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GATGGAAAACGAGACAGTCAG	0.458													7	38					0	0	0.003080	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110442180	110442180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110442180G>A	uc003yne.2	+	27	3247	c.3143G>A	c.(3142-3144)GGA>GAA	p.G1048E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1048	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TATGTCAATGGAATTCCAGCT	0.398										HNSCC(38;0.096)			6	36					0	0	0.021553	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110454391	110454391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110454391G>A	uc003yne.2	+	35	4464	c.4360G>A	c.(4360-4362)GGA>AGA	p.G1454R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1454	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGATGGCAAAGGATTCACAAG	0.373										HNSCC(38;0.096)			6	20					0	0	0.021553	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110471946	110471946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110471946G>A	uc003yne.2	+	47	7231	c.7127G>A	c.(7126-7128)GGA>GAA	p.G2376E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2376	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCCCTGATGGAACTCTGTTT	0.363										HNSCC(38;0.096)			7	10					0	0	0.006214	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110499029	110499029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110499029G>A	uc003yne.2	+	59	9963	c.9859G>A	c.(9859-9861)GAA>AAA	p.E3287K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3287	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCATTCACTGAAAATATGAT	0.368										HNSCC(38;0.096)			10	53					0	0	0.013537	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110505901	110505901	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110505901G>A	uc003yne.2	+	63	10352	c.10248G>A	c.(10246-10248)GGG>GGA	p.G3416G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3416	Extracellular (Potential).|PbH1 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TAAATAGAGGGACCAATACAG	0.353										HNSCC(38;0.096)			4	15					0	0	0.014758	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509479	110509479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110509479C>T	uc003yne.2	+	65	10681	c.10577C>T	c.(10576-10578)TCC>TTC	p.S3526F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3526	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CACAAAATTTCCAGTAAAAAT	0.358										HNSCC(38;0.096)			17	41					0	0	0.004990	0	0
KCNV1	27012	broad.mit.edu	37	8	110984641	110984641	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:110984641G>A	uc003ynr.3	-	2	1179	c.837C>T	c.(835-837)GAC>GAT	p.D279D	KCNV1_uc010mcw.2_Silent_p.D279D	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	279	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TGGCAAGGAGGTCTATGATGT	0.552													23	63					0	0	0.012319	0	0
CSMD3	114788	broad.mit.edu	37	8	113871468	113871468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:113871468C>T	uc003ynu.2	-	11	1820	c.1661G>A	c.(1660-1662)GGA>GAA	p.G554E	CSMD3_uc003ynt.2_Missense_Mutation_p.G514E|CSMD3_uc011lhx.1_Missense_Mutation_p.G450E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	554	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACCACTTGGTCCTTGAAGATT	0.358										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	32					0	0	0.024245	0	0
CSMD3	114788	broad.mit.edu	37	8	114186060	114186060	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:114186060G>A	uc003ynu.2	-	4	759	c.600C>T	c.(598-600)ATC>ATT	p.I200I	CSMD3_uc003ynt.2_Silent_p.I160I|CSMD3_uc011lhx.1_Silent_p.I200I|CSMD3_uc010mcx.1_Silent_p.I200I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	200	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGCTGTAGCGGATCTTGTCCC	0.463										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	64					0	0	0.016723	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119936706	119936706	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:119936706G>A	uc003yon.3	-	5	1436	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F		NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	371					apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			AGCTGTGAAGGAACCTGATGG	0.393													64	242					0	0	0.014410	0	0
COLEC10	10584	broad.mit.edu	37	8	120118157	120118157	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:120118157G>A	uc003yoo.2	+	6	658	c.561G>A	c.(559-561)AAG>AAA	p.K187K		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	187	C-type lectin.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			CCATGCCCAAGGATGAAGCTG	0.493													10	32					0	0	0.006214	0	0
FER1L6	654463	broad.mit.edu	37	8	124992918	124992918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:124992918C>T	uc003yqw.2	+	11	1483	c.1277C>T	c.(1276-1278)TCC>TTC	p.S426F		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	426	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAGTTGCCTTCCAAGGACAAA	0.448											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	67					0	0	0.012319	0	0
NDUFB9	4715	broad.mit.edu	37	8	125555409	125555409	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:125555409C>T	uc003yrg.3	+	2	268	c.183C>T	c.(181-183)ACC>ACT	p.T61T	NDUFB9_uc011lim.1_Silent_p.T61T	NM_005005	NP_004996	Q9Y6M9	NDUB9_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	61					mitochondrial electron transport, NADH to ubiquinone|sensory perception of sound|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)|skin(1)	2	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)		NADH(DB00157)	CGAAGGCCACCCAGCTGCTGA	0.473													23	83					0	0	0.014323	0	0
KIAA0196	9897	broad.mit.edu	37	8	126075787	126075787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:126075787G>A	uc003yrt.2	-	11	1714	c.1385C>T	c.(1384-1386)CCC>CTC	p.P462L	KIAA0196_uc011lir.1_Missense_Mutation_p.P314L|KIAA0196_uc003yru.1_Missense_Mutation_p.P36L	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	462					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TCTGGTTAGGGGTTTCACTCC	0.428													36	127					0	0	0.017118	0	0
POU5F1B	5462	broad.mit.edu	37	8	128429045	128429045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:128429045C>T	uc003ysf.2	+	1	1189	c.934C>T	c.(934-936)CCT>TCT	p.P312S	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron|uc011liu.1_5'Flank	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	312						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGTGTCCTTTCCTCCGGCCCC	0.587													4	15					0	0	0.009096	0	0
ADCY8	114	broad.mit.edu	37	8	131848648	131848648	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:131848648G>A	uc003ytd.3	-	12	2806	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	ADCY8_uc010mds.2_Silent_p.F719F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	850	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCAGCCGGAGGAAAACTGCAC	0.547										HNSCC(32;0.087)			12	49					0	0	0.013537	0	0
OC90	729330	broad.mit.edu	37	8	133049730	133049730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:133049730G>A	uc003ytg.2	-	7	586	c.586C>T	c.(586-588)CCT>TCT	p.P196S	OC90_uc011lix.1_Missense_Mutation_p.P212S	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	212					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			GGCTCCACAGGAACCACTGGA	0.498													3	10					0	0	0.004672	0	0
KCNQ3	3786	broad.mit.edu	37	8	133187826	133187826	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:133187826G>A	uc003ytj.2	-	5	1032	c.807C>T	c.(805-807)TTC>TTT	p.F269F	KCNQ3_uc010mdt.2_Silent_p.F269F	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	269	Helical; Name=Segment S5; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGAGTGTCAGGAAACCGATGT	0.408													14	25					0	0	0.020292	0	0
TMEM71	137835	broad.mit.edu	37	8	133764044	133764044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:133764044C>T	uc003ytp.2	-	4	530	c.301G>A	c.(301-303)GAG>AAG	p.E101K	TMEM71_uc003ytn.2_Missense_Mutation_p.E101K|TMEM71_uc003yto.2_Missense_Mutation_p.E101K	NM_144649	NP_653250	Q6P5X7	TMM71_HUMAN	transmembrane protein 71 isoform 1	101						integral to membrane				ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			ACTAAGTTCTCCTTATACATA	0.358													42	87					0	0	0.014410	0	0
WISP1	8840	broad.mit.edu	37	8	134239698	134239698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:134239698G>A	uc003yub.2	+	5	925	c.849G>A	c.(847-849)ATG>ATA	p.M283I	WISP1_uc003yuc.2_Missense_Mutation_p.M196I|WISP1_uc010meb.2_Missense_Mutation_p.M111I|WISP1_uc010mec.2_Missense_Mutation_p.E132K|WISP1_uc010med.2_Missense_Mutation_p.M38I|WISP1_uc003yud.2_RNA	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	283	CTCK.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			AGGCATCCATGAACTTCACAC	0.517													23	103					0	0	0.021523	0	0
FAM135B	51059	broad.mit.edu	37	8	139323151	139323151	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:139323151G>A	uc003yuy.2	-	3	261	c.90C>T	c.(88-90)ATC>ATT	p.I30I	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	30										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AGGTCACTCGGATCTGGTAAT	0.483										HNSCC(54;0.14)			30	61					0	0	0.012213	0	0
EIF2C2	27161	broad.mit.edu	37	8	141572557	141572557	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:141572557G>A	uc003yvn.2	-	4	553	c.513C>T	c.(511-513)TCC>TCT	p.S171S	EIF2C2_uc010men.2_Silent_p.S94S|EIF2C2_uc010meo.2_Silent_p.S171S	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	171					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CTCACCTCATGGATGGCAAGT	0.642													24	77					0	0	0.016522	0	0
DENND3	22898	broad.mit.edu	37	8	142173457	142173457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:142173457G>A	uc003yvy.2	+	10	1416	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	DENND3_uc010mep.2_Missense_Mutation_p.E341K|DENND3_uc003yvz.1_Missense_Mutation_p.E64K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	380	dDENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TTTAAACTATGAACACAGAGT	0.378													66	242					0	0	0.014410	0	0
CYP11B1	1584	broad.mit.edu	37	8	143958442	143958442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:143958442C>T	uc003yxi.2	-	3	599	c.592G>A	c.(592-594)GAA>AAA	p.E198K	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.E198K|CYP11B1_uc010mey.2_Missense_Mutation_p.E269K	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	198					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CCCACACCTTCTATGGTGTAG	0.652									Familial_Hyperaldosteronism_type_I				4	31					0	0	0.021553	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994729	143994729	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:143994729G>A	uc003yxk.1	-	6	1096	c.1093C>T	c.(1093-1095)CTG>TTG	p.L365L		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	365					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GCCGCCCGCAGCAAGGGCAGC	0.697									Familial_Hyperaldosteronism_type_I				39	105					0	0	0.007835	0	0
EPPK1	83481	broad.mit.edu	37	8	144941340	144941340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:144941340C>T	uc003zaa.1	-	1	6095	c.6082G>A	c.(6082-6084)GAA>AAA	p.E2028K		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2028	Plectin 34.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TAGGCTGTTTCCAGTGGGAGC	0.602													12	69					0	0	0.016723	0	0
PARP10	84875	broad.mit.edu	37	8	145059155	145059155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145059155G>A	uc003zal.3	-	5	1123	c.1015C>T	c.(1015-1017)CCC>TCC	p.P339S	PARP10_uc003zak.3_Missense_Mutation_p.P45S|PARP10_uc011lku.1_Missense_Mutation_p.P351S|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.P339S|PARP10_uc010mfn.1_Missense_Mutation_p.P254S|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	339						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GACCCCATGGGACCTGTCCTC	0.612													46	156					0	0	0.014410	0	0
SPATC1	375686	broad.mit.edu	37	8	145095066	145095066	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145095066C>T	uc011lkw.1	+	2	570	c.468C>T	c.(466-468)TCC>TCT	p.S156S	SPATC1_uc011lkx.1_Silent_p.S156S	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	156										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGGCCAGTTCCCTGGGCCTGC	0.672													6	26					0	0	0.021553	0	0
SPATC1	375686	broad.mit.edu	37	8	145095814	145095814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145095814C>T	uc011lkw.1	+	3	1214	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	SPATC1_uc011lkx.1_Missense_Mutation_p.S371F	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	371										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ATGCATAATTCCCCAACCCAG	0.562													37	75					0	0	0.023175	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145659461	145659461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145659461G>A	uc011llg.1	-	21	3302	c.3287C>T	c.(3286-3288)ACC>ATC	p.T1096I	uc011llh.1_5'Flank	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	1096					cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCTGGGCATGGTGCCCAGGGC	0.687													13	47					0	0	0.016723	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145667651	145667651	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145667651C>T	uc011llg.1	-	6	738	c.723G>A	c.(721-723)GAG>GAA	p.E241E		NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	241					cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			AGCACTCGCTCTCCATGAACC	0.627													37	115					0	0	0.025465	0	0
ZNF251	90987	broad.mit.edu	37	8	145948171	145948171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145948171G>A	uc003zdv.3	-	5	1130	c.874C>T	c.(874-876)CCC>TCC	p.P292S		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	292					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		CAGCCAAAGGGTTTTTCTCCA	0.423													37	78					0	0	0.021022	0	0
ZNF251	90987	broad.mit.edu	37	8	145948395	145948395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:145948395G>A	uc003zdv.3	-	5	906	c.650C>T	c.(649-651)ACC>ATC	p.T217I		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	217	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		ATATTTGAAGGTTTTGCTGCA	0.418													39	100					0	0	0.023175	0	0
INSL6	11172	broad.mit.edu	37	9	5185587	5185587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:5185587G>A	uc003zix.2	-	1	32	c.16C>T	c.(16-18)CGC>TGC	p.R6C		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	6						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		AGGGACAAGCGGAGGAGCCGC	0.647													17	21					0	0	0.028581	0	0
INSL4	3641	broad.mit.edu	37	9	5231621	5231621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:5231621C>T	uc003ziy.2	+	1	203	c.98C>T	c.(97-99)CCC>CTC	p.P33L		NM_002195	NP_002186	Q14641	INSL4_HUMAN	insulin-like 4 precursor	33					cell proliferation|cell-cell signaling|female pregnancy|multicellular organismal development|signal transduction	extracellular space|soluble fraction	hormone activity|insulin-like growth factor receptor binding				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.14)		GGATGTGGTCCCCGATTTGGA	0.562													14	29					0	0	0.016723	0	0
ERMP1	79956	broad.mit.edu	37	9	5805111	5805111	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:5805111G>A	uc003zjm.1	-	10	1884	c.1830C>T	c.(1828-1830)CTC>CTT	p.L610L	ERMP1_uc011lme.1_RNA|ERMP1_uc010mhs.1_Silent_p.L224L	NM_024896	NP_079172	Q7Z2K6	ERMP1_HUMAN	aminopeptidase Fxna	610	Extracellular (Potential).				proteolysis	endoplasmic reticulum membrane|integral to membrane	metal ion binding|metallopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00115)|Lung(218;0.111)		CACTTCTCCCGAGGATAGGGG	0.393													19	59					0	0	0.007413	0	0
GLDC	2731	broad.mit.edu	37	9	6588438	6588438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:6588438G>A	uc003zkc.2	-	14	1863	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	557					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CATGGTGCAGGATCCCTTTAA	0.448													26	88					0	0	0.008361	0	0
PTPRD	5789	broad.mit.edu	37	9	8338977	8338977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:8338977G>A	uc003zkk.2	-	42	6035	c.5324C>T	c.(5323-5325)GCT>GTT	p.A1775V	PTPRD_uc003zkp.2_Missense_Mutation_p.A1369V|PTPRD_uc003zkq.2_Missense_Mutation_p.A1368V|PTPRD_uc003zkr.2_Missense_Mutation_p.A1359V|PTPRD_uc003zks.2_Missense_Mutation_p.A1368V|PTPRD_uc003zkl.2_Missense_Mutation_p.A1766V|PTPRD_uc003zkm.2_Missense_Mutation_p.A1762V|PTPRD_uc003zkn.2_Missense_Mutation_p.A1364V|PTPRD_uc003zko.2_Missense_Mutation_p.A1365V	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1775	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTTGTACTCAGCCATGGGATC	0.418										TSP Lung(15;0.13)			18	56					0	0	0.006122	0	0
TYRP1	7306	broad.mit.edu	37	9	12695584	12695584	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:12695584A>G	uc003zkv.3	+	3	633	c.455A>G	c.(454-456)AAG>AGG	p.K152R		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	152	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GATATGGCAAAGCGCACAACT	0.423									Oculocutaneous_Albinism				24	72					0	0	0.024334	0	0
FREM1	158326	broad.mit.edu	37	9	14748411	14748411	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:14748411C>T	uc003zlm.2	-	31	6374	c.5784G>A	c.(5782-5784)GGG>GGA	p.G1928G	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Silent_p.G464G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1928					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTTTGCCATTCCCACGGGTCC	0.438													10	25					0	0	0.006214	0	0
FREM1	158326	broad.mit.edu	37	9	14776177	14776177	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:14776177C>T	uc003zlm.2	-	25	5057	c.4467G>A	c.(4465-4467)CGG>CGA	p.R1489R	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_5'Flank|FREM1_uc003zll.2_Silent_p.R25R	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1489	CSPG 11.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CGTGCTCGGTCCGCAGTCCAT	0.527													8	37					0	0	0.003080	0	0
FREM1	158326	broad.mit.edu	37	9	14806713	14806713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:14806713C>T	uc003zlm.2	-	18	3810	c.3220G>A	c.(3220-3222)GAA>AAA	p.E1074K	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1074	CSPG 7.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGTATATTTTCGAGGTAGCCA	0.428													6	22					0	0	0.021553	0	0
HAUS6	54801	broad.mit.edu	37	9	19083038	19083038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:19083038G>A	uc003znk.2	-	8	956	c.703C>T	c.(703-705)CGG>TGG	p.R235W	HAUS6_uc011lmz.1_5'UTR|HAUS6_uc003znl.1_Missense_Mutation_p.R99W|HAUS6_uc003znm.1_5'UTR	NM_017645	NP_060115	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6	235					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				ovary(2)	2						CACAAAGACCGAACCTTTGGA	0.328													20	49					0	0	0.018920	0	0
IFNB1	3456	broad.mit.edu	37	9	21077760	21077760	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:21077760G>A	uc003zok.2	-	1	184	c.109C>T	c.(109-111)CAG>TAG	p.Q37*		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	37					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	TTCTGACACTGAAAATTGCTG	0.468													16	39					0	0	0.028581	0	0
IFNA7	3444	broad.mit.edu	37	9	21201635	21201635	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:21201635A>G	uc003zop.1	-	1	570	c.530T>C	c.(529-531)TTT>TCT	p.F177S	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	177					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GTTTGTTGAAAAAGAGAAGGA	0.373													65	222					0	0	0.014410	0	0
IFNA7	3444	broad.mit.edu	37	9	21202135	21202135	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:21202135G>A	uc003zop.1	-	1	70	c.30C>T	c.(28-30)GTC>GTT	p.V10V	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	10				V -> A (in Ref. 3; AAA36039).	blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GTACCAGCACGACCATCAGTA	0.512													24	57					0	0	0.021523	0	0
IFNA6	3443	broad.mit.edu	37	9	21350614	21350614	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:21350614G>A	uc011lni.1	-	1	273	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	91					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CCTTTGTGCTGAAGAGGTTGA	0.488													36	115					0	0	0.017118	0	0
PLAA	9373	broad.mit.edu	37	9	26913937	26913937	+	Missense_Mutation	SNP	G	A	A	rs145325113	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:26913937G>A	uc003zqd.2	-	11	1920	c.1495C>T	c.(1495-1497)CGT>TGT	p.R499C	PLAA_uc003zqe.2_Missense_Mutation_p.R499C	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	499					phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		GGTACATAACGACCAGCACCT	0.353													28	52					0	0	0.013726	0	0
TEK	7010	broad.mit.edu	37	9	27205036	27205036	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:27205036G>A	uc003zqi.3	+	14	2779	c.2337G>A	c.(2335-2337)AGG>AGA	p.R779R	TEK_uc011lno.1_Silent_p.R736R|TEK_uc011lnp.1_Silent_p.R632R|TEK_uc003zqj.1_Silent_p.R713R	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	779	Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		ATGTGCAAAGGAGAATGGCCC	0.463													18	50					0	0	0.004990	0	0
MOBKL2B	79817	broad.mit.edu	37	9	27359163	27359163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:27359163G>A	uc003zqn.2	-	3	986	c.490C>T	c.(490-492)CAC>TAC	p.H164Y		NM_024761	NP_079037	Q86TA1	MOL2B_HUMAN	MOB1, Mps One Binder kinase activator-like 2B	164		Zinc (By similarity).					metal ion binding|protein binding			ovary(1)|pleura(1)	2		all_neural(11;9.12e-11)		Lung(218;6.54e-05)|LUSC - Lung squamous cell carcinoma(38;0.000397)		ATATAGACGTGGACAAAGACC	0.458													77	276					0	0	0.014410	0	0
ACO1	48	broad.mit.edu	37	9	32431821	32431821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:32431821G>A	uc003zqw.3	+	15	1986	c.1831G>A	c.(1831-1833)GAA>AAA	p.E611K	ACO1_uc010mjh.1_Missense_Mutation_p.E445K|ACO1_uc003zqx.3_Missense_Mutation_p.E611K|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	611					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		GATGTTTAAGGAAGTCTATCA	0.517											OREG0019130	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	58					0	0	0.014323	0	0
TAF1L	138474	broad.mit.edu	37	9	32632636	32632636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:32632636C>T	uc003zrg.1	-	1	3032	c.2942G>A	c.(2941-2943)GGA>GAA	p.G981E	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	981					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		ATAGGAGAATCCTTCACCACA	0.507													48	186					0	0	0.014410	0	0
TAF1L	138474	broad.mit.edu	37	9	32634966	32634966	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:32634966A>G	uc003zrg.1	-	1	702	c.612T>C	c.(610-612)AGT>AGC	p.S204S	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	204					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AATCAGAGTAACTACTGAAAT	0.468													50	114					0	0	0.014410	0	0
NFX1	4799	broad.mit.edu	37	9	33351567	33351567	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:33351567A>C	uc003zsq.2	+	16	2495	c.2434A>C	c.(2434-2436)AAC>CAC	p.N812H	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsp.1_Missense_Mutation_p.N812H|NFX1_uc010mjr.1_Missense_Mutation_p.N813H|NFX1_uc003zsr.2_Missense_Mutation_p.N813H	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	812					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		GTTTCGGAGCAACATCCCCTG	0.468													12	51					0	0	0.013537	0	0
KIAA1045	23349	broad.mit.edu	37	9	34977564	34977564	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:34977564C>T	uc003zvq.2	+	7	1210	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	KIAA1045_uc003zvr.2_Silent_p.I344I	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	344							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			TGGGTCCCATCGCAGATAGCA	0.602													7	31					0	0	0.001984	0	0
VCP	7415	broad.mit.edu	37	9	35066696	35066696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35066696C>T	uc003zvy.2	-	4	810	c.421G>A	c.(421-423)GAA>AAA	p.E141K	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Missense_Mutation_p.E96K	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	141					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CGATACGCTTCCAGGAAGTAC	0.433													16	66					0	0	0.028581	0	0
UNC13B	10497	broad.mit.edu	37	9	35313969	35313969	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35313969C>T	uc003zwq.2	+	10	1442	c.1150C>T	c.(1150-1152)CGA>TGA	p.R384*	UNC13B_uc010mkl.1_Nonsense_Mutation_p.R384*|UNC13B_uc003zwr.2_Nonsense_Mutation_p.R384*	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	384					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TACCAAGGTTCGACTCCAGCT	0.438													24	66					0	0	0.024334	0	0
UNC13B	10497	broad.mit.edu	37	9	35399233	35399233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35399233G>A	uc003zwq.2	+	33	4195	c.3903G>A	c.(3901-3903)ATG>ATA	p.M1301I	UNC13B_uc003zwr.2_Missense_Mutation_p.M1301I	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1301	MHD2.				excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GCGTGGTGATGAACACAATGG	0.562													53	120					0	0	0.014410	0	0
RUSC2	9853	broad.mit.edu	37	9	35555487	35555488	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35555487_35555488CC>TT	uc003zww.2	+	3	2700_2701	c.2445_2446CC>TT	c.(2443-2448)CCCCCA>CCTTCA	p.P816S	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.P816S	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	816						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			AAAGCCTGCCCCCATGGAGCCA	0.629													81	119					0	0	0.004672	0	0
SPAG8	26206	broad.mit.edu	37	9	35812260	35812260	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35812260G>A	uc003zye.2	-	1	1	c.-114_splice	c.e1-1		SPAG8_uc003zyf.2_5'Flank|SPAG8_uc003zyg.2_Splice_Site	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2							acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			TCTGCGGGGCGGAAGTCTTCA	0.617													3	15					0	0	0.004672	0	0
OR13J1	392309	broad.mit.edu	37	9	35869520	35869520	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:35869520C>T	uc011lph.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			CCTCCTTGTTCCTCAGGCTGT	0.592													33	79					0	0	0.013726	0	0
RECK	8434	broad.mit.edu	37	9	36080601	36080601	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:36080601G>A	uc003zyv.2	+	7	492	c.406_splice	c.e7-1	p.N136_splice	RECK_uc010mld.2_Splice_Site_p.N136_splice|RECK_uc003zyu.3_Splice_Site_p.N136_splice|RECK_uc003zyw.2_Splice_Site_p.N8_splice|RECK_uc003zyx.2_Splice_Site	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor							anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			TCAATTTACAGAATGCTCTTT	0.289													9	23					0	0	0.008291	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740201	37740201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:37740201C>T	uc004aag.1	+	15	1720	c.1676C>T	c.(1675-1677)CCT>CTT	p.P559L	FRMPD1_uc004aah.1_Missense_Mutation_p.P559L|FRMPD1_uc011lqm.1_Missense_Mutation_p.P381L|FRMPD1_uc011lqn.1_Missense_Mutation_p.P428L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	559						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GAGGAGCAGCCTCCTGGGAAC	0.632													37	115					0	0	0.021022	0	0
SHB	6461	broad.mit.edu	37	9	37919851	37919851	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:37919851G>A	uc004aax.2	-	6	2065	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	499	SH2.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		GATAGAGGAGGGACAAGTGCT	0.597													27	114					0	0	0.006320	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39178229	39178229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:39178229G>A	uc004abi.2	-	5	906	c.667C>T	c.(667-669)CAC>TAC	p.H223Y	CNTNAP3_uc004abj.2_Missense_Mutation_p.H223Y|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.H223Y|CNTNAP3_uc011lqs.1_Missense_Mutation_p.H223Y|CNTNAP3_uc004abl.1_Missense_Mutation_p.H135Y	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	223	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCTTCTCTGTGAAGTAGAATT	0.303													37	115					0	0	0.009718	0	0
FAM75A2	642265	broad.mit.edu	37	9	39888229	39888229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:39888229G>A	uc004abp.2	+	4	1245	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	406						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GCTCTGGCAGGAAAGTTTTTG	0.527													170	416					0	0	0.014410	0	0
ZNF658	26149	broad.mit.edu	37	9	40772475	40772476	+	Missense_Mutation	DNP	CC	TT	TT	rs142990728		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:40772475_40772476CC>TT	uc004abs.2	-	5	2951_2952	c.2799_2800GG>AA	c.(2797-2802)ACGGGG>ACAAGG	p.G934R	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Missense_Mutation_p.G934R	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	934					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GGTTTCTCCCCCGTATGAACTC	0.436													71	196					0	0	0.004672	0	0
ZNF658	26149	broad.mit.edu	37	9	40772611	40772611	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:40772611C>T	uc004abs.2	-	5	2816	c.2664G>A	c.(2662-2664)GGG>GGA	p.G888G	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Silent_p.G888G	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	888	C2H2-type 19; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AGAAAGTCTTCCCACAGTCAT	0.448													36	107					0	0	0.014410	0	0
LOC442421	442421	broad.mit.edu	37	9	66500688	66500688	+	RNA	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:66500688T>C	uc004aed.1	+	3		c.781T>C								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						ACCCCCGGCTTCAGCACCCCT	0.682													3	7					0	0	0.021553	0	0
APBA1	320	broad.mit.edu	37	9	72131527	72131527	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:72131527C>T	uc004ahh.2	-	2	876	c.600G>A	c.(598-600)GAG>GAA	p.E200E		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	200					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						CGTCCCCTATCTCCTCGTACA	0.716													15	32					0	0	0.028581	0	0
PTAR1	375743	broad.mit.edu	37	9	72333278	72333278	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:72333278G>A	uc004ahj.3	-	8	1211	c.1189C>T	c.(1189-1191)CTG>TTG	p.L397L	PTAR1_uc004ahi.2_Silent_p.L345L	NM_001099666	NP_001093136	Q7Z6K3	PTAR1_HUMAN	protein prenyltransferase alpha subunit repeat	397					protein prenylation		protein prenyltransferase activity			central_nervous_system(1)	1						AAAGTAACCAGCCATTTCCTG	0.428													3	23					0	0	0.004672	0	0
TRPM6	140803	broad.mit.edu	37	9	77415335	77415335	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:77415335G>A	uc004ajl.1	-	17	2311	c.2073C>T	c.(2071-2073)GCC>GCT	p.A691A	TRPM6_uc004ajk.1_Silent_p.A686A|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Silent_p.A69A	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	691	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ACAGCGTCATGGCCATGCGCT	0.502													33	67					0	0	0.013726	0	0
TRPM6	140803	broad.mit.edu	37	9	77418784	77418784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:77418784C>T	uc004ajl.1	-	15	1895	c.1657G>A	c.(1657-1659)GGA>AGA	p.G553R	TRPM6_uc004ajk.1_Missense_Mutation_p.G548R|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_5'Flank	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	553	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTTCTATTTCCTGAGGAGTGT	0.393													20	80					0	0	0.008871	0	0
PCSK5	5125	broad.mit.edu	37	9	78784642	78784642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:78784642G>A	uc004ajz.2	+	13	2180	c.1642G>A	c.(1642-1644)GGA>AGA	p.G548R	PCSK5_uc004ajy.2_Missense_Mutation_p.G548R|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	548	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CTCCATGGAAGGATTCAAAAA	0.418													21	74					0	0	0.012319	0	0
PCSK5	5125	broad.mit.edu	37	9	78784740	78784740	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:78784740G>A	uc004ajz.2	+	13	2278	c.1740G>A	c.(1738-1740)AGG>AGA	p.R580R	PCSK5_uc004ajy.2_Silent_p.R580R|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	580	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CTCAGCTAAGGAACTTTAAGA	0.423													20	82					0	0	0.016522	0	0
PCSK5	5125	broad.mit.edu	37	9	78804056	78804056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:78804056G>A	uc004ajz.2	+	19	2965	c.2427G>A	c.(2425-2427)ATG>ATA	p.M809I	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.M83I	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	809	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GCTACTTCATGGAGGATGGGA	0.468													14	62					0	0	0.016723	0	0
GCNT1	2650	broad.mit.edu	37	9	79117396	79117396	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:79117396G>A	uc010mpf.2	+	3	440	c.99G>A	c.(97-99)AGG>AGA	p.R33R	GCNT1_uc010mpg.2_Silent_p.R33R|GCNT1_uc010mph.2_Silent_p.R33R|GCNT1_uc004akf.3_Silent_p.R33R|GCNT1_uc010mpi.2_Silent_p.R33R|GCNT1_uc004akh.3_Silent_p.R33R	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	33	Lumenal (Potential).|Stem region (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						CCGTTTTAAGGATTCATCAAA	0.398													41	93					0	0	0.027894	0	0
PRUNE2	158471	broad.mit.edu	37	9	79252384	79252384	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:79252384C>T	uc010mpk.2	-	14	9037	c.8913G>A	c.(8911-8913)AGG>AGA	p.R2971R	PRUNE2_uc011lsk.1_Silent_p.R220R|PRUNE2_uc011lsl.1_Silent_p.R235R|PRUNE2_uc011lsm.1_Silent_p.R236R|PRUNE2_uc004akj.3_Silent_p.R425R	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2971	CRAL-TRIO.				apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GCCCTGGCATCCTCCTTCTTG	0.398													57	134					0	0	0.014410	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320803	79320803	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:79320803C>T	uc010mpk.2	-	8	6511	c.6387G>A	c.(6385-6387)GTG>GTA	p.V2129V	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2129					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CACTGGATTCCACTTCAGGTC	0.488													38	123					0	0	0.023175	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323922	79323922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:79323922C>T	uc010mpk.2	-	8	3392	c.3268G>A	c.(3268-3270)GAA>AAA	p.E1090K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1090					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CGGTTTGTTTCATTGTACAGT	0.517													40	104					0	0	0.009718	0	0
FLJ43950	347127	broad.mit.edu	37	9	84530474	84530474	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:84530474C>G	uc011lst.1	+	4	496	c.395C>G	c.(394-396)TCC>TGC	p.S132C		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						CCCTTTGTGTCCCCTTTGGCT	0.532													10	41					0	0	0.010729	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607563	84607563	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:84607563G>A	uc004amn.2	+	4	2225	c.2178G>A	c.(2176-2178)GAG>GAA	p.E726E		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	726						integral to membrane					0						CTGTGTCAGAGAGAATTCATG	0.498													20	53					0	0	0.012319	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608332	84608332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:84608332C>T	uc004amn.2	+	4	2994	c.2947C>T	c.(2947-2949)CTT>TTT	p.L983F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	983						integral to membrane					0						AGTCCCCATCCTTGATCGTCC	0.493													58	178					0	0	0.014410	0	0
CTSL1	1514	broad.mit.edu	37	9	90343257	90343257	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:90343257C>T	uc004aph.2	+	4	692	c.342C>T	c.(340-342)GCC>GCT	p.A114A	CTSL1_uc004api.2_Silent_p.A114A|CTSL1_uc004apj.2_Silent_p.A59A|CTSL1_uc010mqh.2_Intron|CTSL1_uc004apk.2_Silent_p.A114A|CTSL1_uc004apl.2_Silent_p.A114A	NM_001912	NP_001903	P07711	CATL1_HUMAN	cathepsin L1 preproprotein	114					macrophage apoptosis|proteolysis	extracellular region|lysosome|nucleus	cysteine-type endopeptidase activity|histone binding			ovary(3)	3					Glucagon recombinant(DB00040)	TTTATGAGGCCCCCAGATCTG	0.502													32	94					0	0	0.013726	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536137	90536137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:90536137G>A	uc010mqi.2	+	4	1344	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	FAM75C1_uc004apq.3_Missense_Mutation_p.E422K	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCTTCCCCAGGAAAGACTGAC	0.493													104	256					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	9	90746110	90746110	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:90746110C>T	uc011lti.1	-	4	1871	c.1842G>A	c.(1840-1842)GTG>GTA	p.V614V						SubName: Full=cDNA FLJ59639;																		TGCTGGTTTTCACGTGGGTGT	0.572													122	327					0	0	0.014410	0	0
SECISBP2	79048	broad.mit.edu	37	9	91964815	91964815	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:91964815C>T	uc004aqj.1	+	13	1943	c.1863C>T	c.(1861-1863)TTC>TTT	p.F621F	SECISBP2_uc011ltk.1_Silent_p.F620F|SECISBP2_uc004aqk.1_Silent_p.F548F|SECISBP2_uc010mqo.1_Silent_p.F326F|SECISBP2_uc011ltl.1_Silent_p.F553F	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	621					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						ACACCACCTTCCCTAAGATCC	0.567													33	68					0	0	0.017118	0	0
SEMA4D	10507	broad.mit.edu	37	9	91993723	91993723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:91993723C>T	uc004aqo.1	-	18	3057	c.2485G>A	c.(2485-2487)GAT>AAT	p.D829N	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.D827N	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	829	Cytoplasmic (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						TCCTCCCTATCCGTGGGGACT	0.587													37	109					0	0	0.017118	0	0
ROR2	4920	broad.mit.edu	37	9	94538029	94538029	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:94538029G>A	uc004arj.1	-	2	368	c.169C>T	c.(169-171)CTG>TTG	p.L57L	ROR2_uc004ari.1_5'UTR|ROR2_uc004ark.2_Silent_p.L57L	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	57	Extracellular (Potential).|Ig-like C2-type.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TCACCTTTCAGAGTTGGAATC	0.552											OREG0019308	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	56					0	0	0.008871	0	0
IARS	3376	broad.mit.edu	37	9	95021262	95021262	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:95021262G>A	uc004art.1	-	19	2147	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S	IARS_uc004ars.1_Silent_p.S475S|IARS_uc004aru.3_Silent_p.S630S|IARS_uc010mqr.2_Silent_p.S520S|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	630					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	TCACCACAGGGGAGTTAATCA	0.423													17	39					0	0	0.006122	0	0
IARS	3376	broad.mit.edu	37	9	95027254	95027254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:95027254G>A	uc004art.1	-	16	1914	c.1657C>T	c.(1657-1659)CCT>TCT	p.P553S	IARS_uc004ars.1_Missense_Mutation_p.P398S|IARS_uc004aru.3_Missense_Mutation_p.P553S|IARS_uc010mqr.2_Missense_Mutation_p.P443S|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	553					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	AAATCTGCAGGAAAAGCATCC	0.433													14	36					0	0	0.024245	0	0
NOL8	55035	broad.mit.edu	37	9	95078256	95078256	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:95078256G>A	uc004arv.2	-	7	988	c.651C>T	c.(649-651)CCC>CCT	p.P217P	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Silent_p.P149P	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	217					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						TTATCTTCTTGGGAGGGCCAT	0.488													18	40					0	0	0.004990	0	0
ZNF484	83744	broad.mit.edu	37	9	95610105	95610105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:95610105G>A	uc004asu.1	-	5	1113	c.964C>T	c.(964-966)CCT>TCT	p.P322S	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.P324S|ZNF484_uc010mrb.1_Missense_Mutation_p.P286S|ZNF484_uc004asv.1_Missense_Mutation_p.P286S	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCCTCATAAGGAGTTTTCTGA	0.423													39	94					0	0	0.027894	0	0
WNK2	65268	broad.mit.edu	37	9	96009842	96009842	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:96009842C>T	uc004ati.1	+	7	1560	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	WNK2_uc011lud.1_Silent_p.F520F|WNK2_uc004atj.2_Silent_p.F520F|WNK2_uc004atk.2_Silent_p.F157F|WNK2_uc010mrc.1_Silent_p.F520F|WNK2_uc010mrd.1_Silent_p.F157F	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	520					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CTGGATTCTTCCACGAGAGTG	0.592													8	30					0	0	0.003080	0	0
WNK2	65268	broad.mit.edu	37	9	96051605	96051605	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:96051605C>T	uc004ati.1	+	20	4680	c.4680C>T	c.(4678-4680)GTC>GTT	p.V1560V	WNK2_uc011lud.1_Silent_p.V1523V|WNK2_uc004atj.2_Silent_p.V1523V|WNK2_uc004atk.2_Silent_p.V1160V|WNK2_uc004atl.1_Silent_p.V118V	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1560					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GGCCCACCGTCCCCCCACAGC	0.711													4	17					0	0	0.009096	0	0
WNK2	65268	broad.mit.edu	37	9	96051806	96051806	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:96051806G>A	uc004ati.1	+	20	4881	c.4881G>A	c.(4879-4881)GGG>GGA	p.G1627G	WNK2_uc011lud.1_Silent_p.G1590G|WNK2_uc004atj.2_Silent_p.G1590G|WNK2_uc004atk.2_Silent_p.G1227G|WNK2_uc004atl.1_Silent_p.G185G	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1627					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCCTGAGAGGGGACCAGCCCC	0.692													15	32					0	0	0.006122	0	0
PHF2	5253	broad.mit.edu	37	9	96416852	96416852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:96416852C>T	uc004aub.2	+	7	1094	c.947C>T	c.(946-948)CCC>CTC	p.P316L	PHF2_uc011lug.1_Missense_Mutation_p.P199L	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	316	JmjC.				liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		CTCTTCATCCCCTCAGGTGAG	0.597													62	192					0	0	0.014410	0	0
C9orf3	84909	broad.mit.edu	37	9	97730049	97730049	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:97730049C>T	uc004ava.2	+	9	2017	c.1882C>T	c.(1882-1884)CAA>TAA	p.Q628*	C9orf3_uc004auy.2_Nonsense_Mutation_p.Q529*|C9orf3_uc004auz.1_Nonsense_Mutation_p.Q529*|C9orf3_uc004avc.2_Nonsense_Mutation_p.Q83*	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	628					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		GGATTTCCTTCAAATGCTACT	0.378													20	71					0	0	0.012319	0	0
TDRD7	23424	broad.mit.edu	37	9	100194369	100194369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:100194369C>T	uc004axj.2	+	4	637	c.412C>T	c.(412-414)CCT>TCT	p.P138S	TDRD7_uc011lux.1_Missense_Mutation_p.P64S	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	138					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				TGGCAAAAAACCTAATCCAGC	0.388													23	76					0	0	0.016522	0	0
TSTD2	158427	broad.mit.edu	37	9	100380128	100380128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:100380128G>A	uc004axn.2	-	4	1002	c.514C>T	c.(514-516)CTT>TTT	p.L172F	TSTD2_uc004axo.2_5'UTR|TSTD2_uc004axp.1_5'UTR	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	172										ovary(2)	2						CAGTAATAAAGGAGCACCTCC	0.483													16	65					0	0	0.024245	0	0
HEMGN	55363	broad.mit.edu	37	9	100693425	100693425	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:100693425C>T	uc004axy.2	-	3	360	c.252G>A	c.(250-252)TTG>TTA	p.L84L	HEMGN_uc004axz.2_Silent_p.L84L	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	84	Necessary for nuclear localization.				cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GCTCCACCTTCAATTCTGTGT	0.423													47	131					0	0	0.014410	0	0
BAAT	570	broad.mit.edu	37	9	104124832	104124832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:104124832C>T	uc010mtd.2	-	4	1244	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N	BAAT_uc004bbd.3_Missense_Mutation_p.D379N	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	379					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	AACCTCAAATCGTGGGTCGTT	0.542													29	40					0	0	0.007291	0	0
ZNF189	7743	broad.mit.edu	37	9	104171062	104171062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:104171062C>T	uc004bbh.1	+	3	1288	c.1012C>T	c.(1012-1014)CAC>TAC	p.H338Y	ZNF189_uc004bbg.1_Missense_Mutation_p.H296Y|ZNF189_uc004bbi.1_Missense_Mutation_p.H324Y|ZNF189_uc011lvk.1_Missense_Mutation_p.H323Y	NM_003452	NP_003443	O75820	ZN189_HUMAN	zinc finger protein 189 isoform 1	338	C2H2-type 7.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|kidney(1)|central_nervous_system(1)	6		Acute lymphoblastic leukemia(62;0.0559)				CCAAAAAATTCACACTGGCGA	0.413													26	86					0	0	0.021523	0	0
RNF20	56254	broad.mit.edu	37	9	104302837	104302837	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:104302837C>T	uc004bbn.2	+	4	453	c.363C>T	c.(361-363)CTC>CTT	p.L121L		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	121					histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		GAGACCTACTCACAGAACGAA	0.453													21	49					0	0	0.012319	0	0
PPP3R2	5535	broad.mit.edu	37	9	104357120	104357120	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:104357120C>T	uc004bbr.2	-	1	164	c.93G>A	c.(91-93)AAG>AAA	p.K31K	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_Intron	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	28	EF-hand 1.						calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	AGTCCAACTTCTTAAACCTCC	0.547													55	136					0	0	0.014410	0	0
OR13C3	138803	broad.mit.edu	37	9	107298405	107298405	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:107298405C>T	uc004bcb.1	-	1	690	c.690G>A	c.(688-690)GTG>GTA	p.V230V		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	230	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TATTTGATATCACCATGGTGA	0.388													33	63					0	0	0.010818	0	0
OR13C8	138802	broad.mit.edu	37	9	107331532	107331532	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:107331532C>T	uc011lvo.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGTTTTCTTCGTTCTAATTT	0.428													71	226					0	0	0.014410	0	0
OR13C8	138802	broad.mit.edu	37	9	107332092	107332092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:107332092C>T	uc011lvo.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTAGTAATTTCCATCTCTTAC	0.418													39	112					0	0	0.025465	0	0
OR13C9	286362	broad.mit.edu	37	9	107380314	107380314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:107380314G>A	uc011lvr.1	-	1	172	c.172C>T	c.(172-174)CCT>TCT	p.P58S		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGTACATAGGGGTGTGAAGG	0.443													26	68					0	0	0.027356	0	0
ABCA1	19	broad.mit.edu	37	9	107568612	107568612	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:107568612G>A	uc004bcl.2	-	31	4687	c.4374C>T	c.(4372-4374)AAC>AAT	p.N1458N		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1458	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGGTGAAGGGTTCTGCATTG	0.592													27	58					0	0	0.021523	0	0
ZNF462	58499	broad.mit.edu	37	9	109734355	109734356	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:109734355_109734356GG>AA	uc004bcz.2	+	8	6786_6787	c.6497_6498GG>AA	c.(6496-6498)AGG>AAA	p.R2166K	ZNF462_uc010mto.2_Missense_Mutation_p.R2075K|ZNF462_uc004bda.2_Missense_Mutation_p.R2074K|ZNF462_uc011lvz.1_Missense_Mutation_p.R123K|ZNF462_uc004bdb.1_Missense_Mutation_p.R74K	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	2166					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GCCCTGGCAAGGAACAACAGCC	0.53													24	60					0	0	0.004672	0	0
PTPN3	5774	broad.mit.edu	37	9	112172630	112172630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:112172630G>A	uc004bed.2	-	15	1491	c.1379C>T	c.(1378-1380)CCA>CTA	p.P460L	PTPN3_uc004beb.2_Missense_Mutation_p.P329L|PTPN3_uc004bec.2_Missense_Mutation_p.P284L|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.P415L|PTPN3_uc011lwh.1_Missense_Mutation_p.P306L|PTPN3_uc011lwd.1_5'UTR|PTPN3_uc011lwe.1_Missense_Mutation_p.P173L|PTPN3_uc011lwf.1_Missense_Mutation_p.P128L	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	460					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						ATTTGAAGATGGAGACACAGA	0.522													44	111					0	0	0.013114	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900002	112900002	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:112900002C>T	uc004bei.2	+	9	3066	c.2874C>T	c.(2872-2874)TTC>TTT	p.F958F	PALM2-AKAP2_uc004bek.3_Silent_p.F726F|PALM2-AKAP2_uc004bej.3_Silent_p.F726F|PALM2-AKAP2_uc004bel.1_Silent_p.F536F|AKAP2_uc011lwi.1_Silent_p.F584F|AKAP2_uc004bem.2_Silent_p.F584F|PALM2-AKAP2_uc010mtw.1_Silent_p.F544F|AKAP2_uc011lwj.1_Silent_p.F495F|PALM2-AKAP2_uc004ben.2_Silent_p.F495F	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	495							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CCAATGATTTCAGCATGGACA	0.502													38	133					0	0	0.027894	0	0
TXNDC8	255220	broad.mit.edu	37	9	113066797	113066797	+	Silent	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113066797T>G	uc004bes.2	-	5	320	c.271A>C	c.(271-273)AGA>CGA	p.R91R	TXNDC8_uc011lwl.1_Silent_p.R71R	NM_001003936	NP_001003936	Q6A555	TXND8_HUMAN	thioredoxin domain containing 8	91	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	Golgi apparatus	electron carrier activity|protein disulfide oxidoreductase activity				0						CTTTTGATTCTTGAGAATAGG	0.383													31	91					0	0	0.017118	0	0
SVEP1	79987	broad.mit.edu	37	9	113168712	113168712	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113168712G>A	uc010mtz.2	-	38	9505	c.9168C>T	c.(9166-9168)TTC>TTT	p.F3056F	SVEP1_uc010mty.2_Silent_p.F982F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3056	Sushi 27.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CACAGTGGGGGAACCCAGAGC	0.488													28	78					0	0	0.007291	0	0
SVEP1	79987	broad.mit.edu	37	9	113173478	113173478	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113173478G>A	uc010mtz.2	-	37	6850	c.6513C>T	c.(6511-6513)AGC>AGT	p.S2171S	SVEP1_uc010mty.2_Silent_p.S97S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2171	Sushi 13.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTTGTTGCAGCTGTAAGCCA	0.532													41	111					0	0	0.014410	0	0
SVEP1	79987	broad.mit.edu	37	9	113192643	113192643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113192643G>A	uc010mtz.2	-	33	5778	c.5441C>T	c.(5440-5442)TCG>TTG	p.S1814L	SVEP1_uc010mty.2_5'Flank	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1814	Sushi 7.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCCTGACACGAAAATGTGAC	0.403													11	26					0	0	0.008291	0	0
SVEP1	79987	broad.mit.edu	37	9	113241922	113241922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113241922C>T	uc010mtz.2	-	13	2817	c.2480G>A	c.(2479-2481)GGA>GAA	p.G827E	SVEP1_uc010mua.1_Missense_Mutation_p.G827E|SVEP1_uc004beu.2_Missense_Mutation_p.G827E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	827					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TACCATTTTTCCCAGGGTCGT	0.388													69	187					0	0	0.014410	0	0
SVEP1	79987	broad.mit.edu	37	9	113252033	113252033	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:113252033G>A	uc010mtz.2	-	9	2164	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	SVEP1_uc010mua.1_Silent_p.F609F|SVEP1_uc004beu.2_Silent_p.F609F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	609	HYR 1.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AAGGTGGGGTGAAAGCTGGAT	0.393													9	41					0	0	0.010729	0	0
HSDL2	84263	broad.mit.edu	37	9	115216316	115216316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:115216316G>A	uc004bga.1	+	9	982	c.889G>A	c.(889-891)GAG>AAG	p.E297K	HSDL2_uc011lwv.1_Missense_Mutation_p.E176K|HSDL2_uc004bgb.1_Missense_Mutation_p.E131K|HSDL2_uc004bgc.1_Missense_Mutation_p.E224K|HSDL2_uc011lww.1_Missense_Mutation_p.E92K	NM_032303	NP_115679	Q6YN16	HSDL2_HUMAN	hydroxysteroid dehydrogenase like 2	297						peroxisome	oxidoreductase activity|sterol binding				0						ATTCAAAGAAGAGAAACTGCA	0.403													22	71					0	0	0.012319	0	0
C9orf43	257169	broad.mit.edu	37	9	116185631	116185631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:116185631C>T	uc004bho.3	+	7	905	c.509C>T	c.(508-510)TCT>TTT	p.S170F	C9orf43_uc004bhp.2_Missense_Mutation_p.S170F	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	170											0						CTGGGTCTCTCTGGAAATCAG	0.448													11	31					0	0	0.008291	0	0
RGS3	5998	broad.mit.edu	37	9	116346364	116346364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:116346364G>A	uc004bhq.2	+	21	2881	c.2672G>A	c.(2671-2673)GGG>GAG	p.G891E	RGS3_uc004bhs.2_Missense_Mutation_p.G781E|RGS3_uc004bht.2_Missense_Mutation_p.G610E|RGS3_uc010muy.2_Intron|RGS3_uc004bhv.2_Missense_Mutation_p.G212E|RGS3_uc010muz.1_Missense_Mutation_p.G230E|RGS3_uc004bhw.2_Intron|RGS3_uc011lxh.1_Missense_Mutation_p.G201E|RGS3_uc004bhx.2_Missense_Mutation_p.G212E|RGS3_uc004bhy.1_Missense_Mutation_p.G201E|RGS3_uc004bhz.2_Missense_Mutation_p.G233E	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	891					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity	p.H891H(1)		ovary(1)|lung(1)|skin(1)	3						gtggaggagggggaggaaggg	0.428													20	54					0	0	0.008871	0	0
COL27A1	85301	broad.mit.edu	37	9	117063353	117063353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:117063353G>A	uc011lxl.1	+	52	4703	c.4703G>A	c.(4702-4704)GGA>GAA	p.G1568E	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1568	Pro-rich.|Collagen-like 16.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CTCCTTTAGGGAAAGGAAGGC	0.632													29	95					0	0	0.010818	0	0
AKNA	80709	broad.mit.edu	37	9	117106061	117106061	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:117106061G>A	uc004biq.3	-	18	3819	c.3684C>T	c.(3682-3684)TCC>TCT	p.S1228S	AKNA_uc004bin.3_Silent_p.S475S|AKNA_uc004bio.3_Silent_p.S688S|AKNA_uc004bip.3_Silent_p.S1147S|AKNA_uc004bir.3_Silent_p.S1228S|AKNA_uc004bis.3_Silent_p.S1228S|AKNA_uc010mve.2_Silent_p.S1109S	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1228					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						CCGCCTTAGGGGACAGAACAT	0.527													34	108					0	0	0.017118	0	0
AKNA	80709	broad.mit.edu	37	9	117129925	117129925	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:117129925G>A	uc004biq.3	-	5	1761	c.1626C>T	c.(1624-1626)CCC>CCT	p.P542P	AKNA_uc004bio.3_Silent_p.P2P|AKNA_uc004bip.3_Silent_p.P461P|AKNA_uc004bir.3_Silent_p.P542P|AKNA_uc004bis.3_Silent_p.P542P|AKNA_uc010mve.2_Silent_p.P423P|AKNA_uc004biu.1_Silent_p.P283P|AKNA_uc004biv.1_Silent_p.P542P	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	542					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						ACCCCAGGGTGGGCATGCTGG	0.612													27	84					0	0	0.007291	0	0
TNC	3371	broad.mit.edu	37	9	117826195	117826195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:117826195G>A	uc004bjj.3	-	12	4002	c.3640C>T	c.(3640-3642)CCA>TCA	p.P1214S	TNC_uc010mvf.2_Missense_Mutation_p.P1214S	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1214	Fibronectin type-III 7.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGTCCTCCTGGGACGGTGAGG	0.562													34	95					0	0	0.013726	0	0
TNC	3371	broad.mit.edu	37	9	117853253	117853253	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:117853253G>A	uc004bjj.3	-	2	407	c.45C>T	c.(43-45)TTC>TTT	p.F15F	TNC_uc010mvf.2_Silent_p.F15F	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	15					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CGAGGGCAAGGAAAGCAAGAA	0.597													21	49					0	0	0.016522	0	0
PAPPA	5069	broad.mit.edu	37	9	118997653	118997653	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:118997653G>A	uc004bjn.2	+	7	2850	c.2469G>A	c.(2467-2469)GGG>GGA	p.G823G	PAPPA_uc011lxp.1_Silent_p.G518G|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	823					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTGTCAGTGGGAAGAACATCT	0.522													14	37					0	0	0.020292	0	0
PAPPA	5069	broad.mit.edu	37	9	118997908	118997908	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:118997908C>T	uc004bjn.2	+	7	3105	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F	PAPPA_uc011lxp.1_Silent_p.F603F|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	908					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ATAGGAAATTCGTAGACATGT	0.517													37	90					0	0	0.019004	0	0
ASTN2	23245	broad.mit.edu	37	9	119903672	119903672	+	Silent	SNP	G	A	A	rs140458736	by1000genomes	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:119903672G>A	uc004bjs.1	-	4	1202	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	ASTN2_uc004bjr.1_Silent_p.I367I|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	367	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCAGCTGACCGATCTCGATGG	0.587													12	46					0	0	0.016723	0	0
ASTN2	23245	broad.mit.edu	37	9	119903704	119903704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:119903704C>T	uc004bjs.1	-	4	1170	c.1069G>A	c.(1069-1071)GAG>AAG	p.E357K	ASTN2_uc004bjr.1_Missense_Mutation_p.E357K|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	357	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGGAAACTCTCCTTGAACTTC	0.592													13	50					0	0	0.024245	0	0
ASTN2	23245	broad.mit.edu	37	9	119976733	119976733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:119976733G>A	uc004bjs.1	-	3	1020	c.919C>T	c.(919-921)CAT>TAT	p.H307Y	ASTN2_uc004bjr.1_Missense_Mutation_p.H307Y|ASTN2_uc004bjt.1_Missense_Mutation_p.H307Y	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	307	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGGGAGACATGGTTGGCCCGC	0.577													43	106					0	0	0.027894	0	0
ASTN2	23245	broad.mit.edu	37	9	120053707	120053707	+	Silent	SNP	G	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:120053707G>T	uc004bjs.1	-	2	629	c.528C>A	c.(526-528)TCC>TCA	p.S176S	ASTN2_uc004bjr.1_Silent_p.S176S|ASTN2_uc004bjt.1_Silent_p.S176S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	176	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGCTGCTCATGGAGACGTGGA	0.592													31	89					6.97489e-18	7.10073e-18	0.021022	1	0
ASTN2	23245	broad.mit.edu	37	9	120053793	120053793	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:120053793C>T	uc004bjs.1	-	2	544	c.443_splice	c.e2-1	p.E148_splice	ASTN2_uc004bjr.1_Splice_Site_p.E148_splice|ASTN2_uc004bjt.1_Splice_Site_p.E148_splice	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c							integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CCAGACATCTCTGCAAGACAA	0.587													19	41					0	0	0.010504	0	0
TLR4	7099	broad.mit.edu	37	9	120475341	120475341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:120475341C>T	uc004bjz.2	+	3	1226	c.935C>T	c.(934-936)TCA>TTA	p.S312L	TLR4_uc004bka.2_Missense_Mutation_p.S272L|TLR4_uc004bkb.2_Missense_Mutation_p.S112L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	312	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AATGTTTCTTCATTTTCCCTG	0.328													22	52					0	0	0.012319	0	0
DBC1	1620	broad.mit.edu	37	9	121929407	121929407	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:121929407C>T	uc004bkc.2	-	8	2697	c.2241G>A	c.(2239-2241)ACG>ACA	p.T747T		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	747					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TGAGGATCTCCGTGTTGTACA	0.488													106	287					0	0	0.014410	0	0
DBC1	1620	broad.mit.edu	37	9	121930199	121930199	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:121930199G>A	uc004bkc.2	-	8	1905	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	483					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CCAGGTCCTGGAAGTCCAGGT	0.562													31	78					0	0	0.008361	0	0
TRAF1	7185	broad.mit.edu	37	9	123675969	123675969	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:123675969G>A	uc004bku.1	-	5	914	c.342C>T	c.(340-342)TCC>TCT	p.S114S	TRAF1_uc011lyg.1_5'UTR|TRAF1_uc010mvl.1_Silent_p.S114S	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	114					apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						GGTTTAGGTGGGAGGTCTGGG	0.597													43	117					0	0	0.014410	0	0
MRRF	92399	broad.mit.edu	37	9	125075623	125075623	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:125075623G>A	uc004bmb.2	+	6	784	c.669G>A	c.(667-669)AAG>AAA	p.K223K	MRRF_uc004bmc.2_Intron|MRRF_uc010mvz.1_RNA|MRRF_uc010mwa.2_Silent_p.K223K|MRRF_uc011lyr.1_Silent_p.K171K|MRRF_uc004bmd.2_Silent_p.K223K|MRRF_uc004bme.2_RNA	NM_138777	NP_620132	Q96E11	RRFM_HUMAN	mitochondrial ribosome recycling factor isoform	223					ribosome disassembly|translation	mitochondrion	sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						AGAAATCCAAGGATACAGTCT	0.428													29	74					0	0	0.012213	0	0
PTGS1	5742	broad.mit.edu	37	9	125152509	125152509	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:125152509C>T	uc004bmg.1	+	10	1464	c.1329C>T	c.(1327-1329)ATC>ATT	p.I443I	PTGS1_uc011lys.1_Silent_p.I381I|PTGS1_uc010mwb.1_Silent_p.I297I|PTGS1_uc004bmf.1_Silent_p.I406I|PTGS1_uc004bmh.1_Silent_p.I334I|PTGS1_uc011lyt.1_Silent_p.I334I	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	443					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	ACCACCACATCCTGCATGTGG	0.592													25	43					0	0	0.021523	0	0
OR1J1	347168	broad.mit.edu	37	9	125240164	125240164	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:125240164G>A	uc011lyu.1	-	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GGAGGCCCAGGAGGAGGAACT	0.562													53	123					0	0	0.014410	0	0
OR1L8	138881	broad.mit.edu	37	9	125330095	125330095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:125330095C>T	uc004bmp.1	-	1	662	c.662G>A	c.(661-663)CGA>CAA	p.R221Q		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AGTGAGGATTCGTATATAAGA	0.428													8	34					0	0	0.004482	0	0
OR1L1	26737	broad.mit.edu	37	9	125424585	125424585	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:125424585C>T	uc011lza.1	+	1	741	c.741C>T	c.(739-741)ATC>ATT	p.I247I		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	247	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCAAAGAAATCACAGTAATGA	0.403													82	220					0	0	0.014410	0	0
CRB2	286204	broad.mit.edu	37	9	126132962	126132962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:126132962C>T	uc004bnx.1	+	7	1722	c.1630C>T	c.(1630-1632)CTC>TTC	p.L544F	CRB2_uc004bnw.1_Missense_Mutation_p.L544F	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	544	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CCCTGCCCGGCTCTGTGTGGC	0.667													55	131					0	0	0.014410	0	0
DENND1A	57706	broad.mit.edu	37	9	126219702	126219702	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:126219702G>A	uc004bnz.1	-	15	1344	c.1111C>T	c.(1111-1113)CGA>TGA	p.R371*	DENND1A_uc011lzl.1_Nonsense_Mutation_p.R146*|DENND1A_uc004bny.1_Intron|DENND1A_uc011lzm.1_Nonsense_Mutation_p.R339*|DENND1A_uc004boa.1_Nonsense_Mutation_p.R371*|DENND1A_uc004bob.1_Nonsense_Mutation_p.R341*|DENND1A_uc004boc.2_Nonsense_Mutation_p.R339*	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	371	dDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AGATCTAATCGACCATCAATA	0.428													51	130					0	0	0.014410	0	0
LHX2	9355	broad.mit.edu	37	9	126777551	126777551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:126777551G>A	uc004boe.1	+	3	1213	c.474G>A	c.(472-474)ATG>ATA	p.M158I	LHX2_uc010mwi.1_Missense_Mutation_p.M166I	NM_004789	NP_004780	P50458	LHX2_HUMAN	LIM homeobox protein 2	158	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACTTCGGCATGAAGGACAGCC	0.622													81	206					0	0	0.014410	0	0
NEK6	10783	broad.mit.edu	37	9	127113138	127113138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:127113138G>A	uc004bog.2	+	10	1003	c.854G>A	c.(853-855)TGC>TAC	p.C285Y	NEK6_uc004bof.2_Missense_Mutation_p.C303Y|NEK6_uc004boh.2_Missense_Mutation_p.C319Y|NEK6_uc010mwj.2_Missense_Mutation_p.C238Y|NEK6_uc010mwk.2_Missense_Mutation_p.C285Y|NEK6_uc004boi.2_Missense_Mutation_p.C285Y|LOC100129034_uc010mwl.2_5'Flank	NM_014397	NP_055212	Q9HC98	NEK6_HUMAN	NIMA-related kinase 6 isoform 2	285	Protein kinase.				apoptosis|cell division|chromosome segregation|mitosis|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of mitotic metaphase/anaphase transition	cytoplasm|nucleus	ATP binding|kinesin binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|kidney(1)	3						GTCAGCATGTGCATCTGCCCT	0.552													27	78					0	0	0.007291	0	0
LMX1B	4010	broad.mit.edu	37	9	129458605	129458605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:129458605G>A	uc004bqj.2	+	8	1065	c.1015G>A	c.(1015-1017)GAT>AAT	p.D339N	LMX1B_uc004bqi.2_Missense_Mutation_p.D332N|LMX1B_uc011maa.1_Missense_Mutation_p.D343N	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	339					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CATCGACAGCGATACCTCCTT	0.652									Nail-Patella_Syndrome				84	220					0	0	0.014410	0	0
SLC2A8	29988	broad.mit.edu	37	9	130167266	130167266	+	Silent	SNP	C	T	T	rs144432732	byFrequency	TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:130167266C>T	uc004bqu.2	+	8	1191	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	SLC2A8_uc010mxj.2_Silent_p.I382I|SLC2A8_uc004bqv.2_Silent_p.I54I	NM_014580	NP_055395	Q9NY64	GTR8_HUMAN	solute carrier family 2 (facilitated glucose	382	Helical; Name=10; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	D-glucose transmembrane transporter activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						GCCTCTTCATCGCCGGTAAGG	0.701													33	84					0	0	0.017118	0	0
FAM129B	64855	broad.mit.edu	37	9	130287345	130287345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:130287345G>A	uc004brh.2	-	4	615	c.413C>T	c.(412-414)TCC>TTC	p.S138F	FAM129B_uc004bri.2_Missense_Mutation_p.S125F|FAM129B_uc004brj.3_Missense_Mutation_p.S138F	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	138	PH.						protein binding				0						ACCTGGTAAGGAGTTGCCAAT	0.602													40	97					0	0	0.007835	0	0
STXBP1	6812	broad.mit.edu	37	9	130423393	130423393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:130423393C>T	uc004brl.2	+	6	535	c.338C>T	c.(337-339)GCC>GTC	p.A113V	STXBP1_uc004brk.2_Missense_Mutation_p.A113V	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	113					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						TGTCCAGATGCCCTGTTTAAT	0.438													34	97					0	0	0.021022	0	0
DPM2	8818	broad.mit.edu	37	9	130698837	130698837	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:130698837A>C	uc004bsv.2	-	3	855	c.191T>G	c.(190-192)TTT>TGT	p.F64C		NM_003863	NP_003854	O94777	DPM2_HUMAN	dolichyl-phosphate mannosyltransferase 2	64	Helical; (Potential).				C-terminal protein lipidation|dolichol-linked oligosaccharide biosynthetic process|preassembly of GPI anchor in ER membrane|protein N-linked glycosylation via asparagine|protein O-linked mannosylation|regulation of protein stability	dolichol-phosphate-mannose synthase complex|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to endoplasmic reticulum membrane	protein binding				0						CTTACCCACAAACAGGAGCAG	0.443													54	165					0	0	0.014410	0	0
NUP188	23511	broad.mit.edu	37	9	131768355	131768355	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:131768355C>T	uc004bws.1	+	42	4918	c.4896C>T	c.(4894-4896)ACC>ACT	p.T1632T		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1632					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						AGCCCCTCACCCAGGCAGTGG	0.438											OREG0019528	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	172					0	0	0.009718	0	0
ASS1	445	broad.mit.edu	37	9	133333811	133333811	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:133333811G>A	uc004bzm.2	+	5	554	c.198G>A	c.(196-198)AGG>AGA	p.R66R	ASS1_uc004bzn.2_Silent_p.R66R|ASS1_uc010mza.2_Silent_p.R142R|ASS1_uc004bzo.2_Silent_p.R66R|ASS1_uc010mzb.2_Silent_p.R104R|ASS1_uc004bzp.2_Silent_p.R66R|ASS1_uc010mzc.2_Silent_p.R66R	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	66					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	ATGTCAGCAGGGAGTTTGTGG	0.607													32	103					0	0	0.012213	0	0
LAMC3	10319	broad.mit.edu	37	9	133961020	133961020	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:133961020G>A	uc004caa.1	+	25	4238	c.4140G>A	c.(4138-4140)GCG>GCA	p.A1380A	LAMC3_uc010mze.1_Silent_p.A68A	NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1380	Domain II and I.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CCAAGCAGGCGGAGAGGATGC	0.597													32	83					0	0	0.009535	0	0
SETX	23064	broad.mit.edu	37	9	135201741	135201741	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:135201741G>A	uc004cbk.2	-	10	5427	c.5244C>T	c.(5242-5244)TTC>TTT	p.F1748F	SETX_uc004cbj.2_Silent_p.F1367F|SETX_uc010mzt.2_Silent_p.F1367F	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1748					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CCATCAAAGGGAAAAAAACAT	0.378													18	33					0	0	0.007413	0	0
SETX	23064	broad.mit.edu	37	9	135205748	135205748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:135205748G>A	uc004cbk.2	-	10	1420	c.1237C>T	c.(1237-1239)CCT>TCT	p.P413S	SETX_uc004cbj.2_Missense_Mutation_p.P32S|SETX_uc010mzt.2_Missense_Mutation_p.P32S	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	413			P -> L (in SCAR1).		cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TGGACAAAAGGGATGAACCAT	0.408													26	71					0	0	0.007291	0	0
C9orf171	389799	broad.mit.edu	37	9	135374845	135374845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:135374845G>A	uc004cbn.2	+	4	538	c.490G>A	c.(490-492)GTG>ATG	p.V164M	C9orf171_uc004cbo.2_Missense_Mutation_p.V128M	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	164										ovary(4)|large_intestine(1)	5						CCGCGGGGCGGTGAAAGCCGG	0.612													58	149					0	0	0.014410	0	0
C9orf98	158067	broad.mit.edu	37	9	135601108	135601108	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:135601108C>T	uc004cbu.1	-	13	1963	c.1407G>A	c.(1405-1407)GGG>GGA	p.G469G	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Silent_p.G265G	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	469	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		GATTAATGATCCCACTCTCGA	0.567													5	25					0	0	0.014758	0	0
ABO	28	broad.mit.edu	37	9	136136727	136136727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:136136727C>T	uc004cda.1	-	3	174	c.149G>A	c.(148-150)GGG>GAG	p.G50E	ABO_uc010naf.1_5'UTR|ABO_uc011mcz.1_5'UTR|ABO_uc010nag.1_Intron	NM_020469	NP_065202	P16442	BGAT_HUMAN	ABO blood group (alpha	50	Helical; Signal-anchor for type II membrane protein; (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		TCACCAGAACCCCCGTTCCAG	0.607													7	10					0	0	0.001984	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136319683	136319683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:136319683G>A	uc004cdv.3	+	24	3635	c.3191G>A	c.(3190-3192)AGT>AAT	p.S1064N	ADAMTS13_uc004cdp.3_Missense_Mutation_p.S291N|ADAMTS13_uc004cdt.1_Missense_Mutation_p.S1064N|ADAMTS13_uc004cdu.1_Missense_Mutation_p.S1033N|ADAMTS13_uc004cdw.3_Missense_Mutation_p.S1064N|ADAMTS13_uc004cdx.3_Missense_Mutation_p.S1033N|ADAMTS13_uc004cdz.3_Missense_Mutation_p.S734N|ADAMTS13_uc004cea.1_5'Flank|ADAMTS13_uc004ceb.3_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1064	TSP type-1 7.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCCGAGGCCAGTGTCCCCTGT	0.677													21	51					0	0	0.016522	0	0
DBH	1621	broad.mit.edu	37	9	136507497	136507497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:136507497C>T	uc004cel.2	+	3	664	c.655C>T	c.(655-657)CCC>TCC	p.P219S		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	219	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GGTCCAAGCTCCCAATATCCA	0.592													13	52					0	0	0.024245	0	0
OLFM1	10439	broad.mit.edu	37	9	138011906	138011906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:138011906C>T	uc010nar.2	+	6	1656	c.1340C>T	c.(1339-1341)TCC>TTC	p.S447F	OLFM1_uc004cfl.3_Missense_Mutation_p.S429F|OLFM1_uc004cfn.3_Missense_Mutation_p.S198F	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	447	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		AACAAATACTCCCACATCTCC	0.537													50	143					0	0	0.014410	0	0
KCNT1	57582	broad.mit.edu	37	9	138662882	138662882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:138662882G>A	uc011mdq.1	+	18	2023	c.1949G>A	c.(1948-1950)GGG>GAG	p.G650E	KCNT1_uc011mdr.1_Missense_Mutation_p.G477E|KCNT1_uc010nbf.2_Missense_Mutation_p.G605E|KCNT1_uc004cgo.1_Missense_Mutation_p.G399E	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	650						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GCCTTCTCGGGGCAGGGGCTG	0.657													11	24					0	0	0.008291	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713009	138713009	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:138713009G>A	uc004cgr.3	-	11	3498	c.3498C>T	c.(3496-3498)TTC>TTT	p.F1166F	CAMSAP1_uc004cgq.3_Silent_p.F1056F|CAMSAP1_uc010nbg.2_Silent_p.F888F	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1166						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TGTAACTGTCGAAGAGACACT	0.567													71	259					0	0	0.014410	0	0
GPSM1	26086	broad.mit.edu	37	9	139252507	139252507	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:139252507A>G	uc004chd.2	+	14	2083	c.1863A>G	c.(1861-1863)GTA>GTG	p.V621V	GPSM1_uc011mdu.1_Silent_p.V112V|GPSM1_uc004che.2_Silent_p.V112V	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	621					cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		CACCTGACGTACTGCCCCGGG	0.687													28	82					0	0	0.012213	0	0
PMPCA	23203	broad.mit.edu	37	9	139310781	139310781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:139310781G>A	uc004chl.2	+	6	576	c.571G>A	c.(571-573)GAG>AAG	p.E191K	PMPCA_uc011mdy.1_Missense_Mutation_p.E191K|PMPCA_uc010nbk.2_RNA|PMPCA_uc010nbl.2_Missense_Mutation_p.E91K|PMPCA_uc011mdz.1_Missense_Mutation_p.E60K|PMPCA_uc004chm.1_5'UTR|PMPCA_uc004chn.1_5'Flank	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	191					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		GGTCCAGTTTGAGCTGGAGGA	0.542													42	122					0	0	0.014410	0	0
C9orf86	55684	broad.mit.edu	37	9	139718065	139718065	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:139718065C>T	uc004cji.1	+	2	487	c.219C>T	c.(217-219)ATC>ATT	p.I73I	C9orf86_uc004cjm.2_Silent_p.I73I|C9orf86_uc004cjh.2_Silent_p.I73I|C9orf86_uc004cjj.1_Silent_p.I73I|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Silent_p.I73I|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_5'Flank	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	73	Small GTPase-like.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		AGGAGTACATCCCCACACAGG	0.627													23	29					0	0	0.016522	0	0
ABCA2	20	broad.mit.edu	37	9	139912449	139912449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:139912449G>A	uc011mem.1	-	14	2217	c.2069C>T	c.(2068-2070)CCC>CTC	p.P690L	ABCA2_uc011mel.1_Missense_Mutation_p.P691L|ABCA2_uc004ckl.1_Missense_Mutation_p.P621L|ABCA2_uc004ckm.1_Missense_Mutation_p.P721L|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	690					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCAGGGGTAGGGGAACATCTG	0.567													9	48					0	0	0.010729	0	0
NPDC1	56654	broad.mit.edu	37	9	139935265	139935265	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr9:139935265C>T	uc004ckt.2	-	4	791	c.556_splice	c.e4+1	p.V186_splice	NPDC1_uc004ckr.2_Splice_Site_p.V186_splice|NPDC1_uc004cks.2_Splice_Site_p.V264_splice|NPDC1_uc004cku.2_Splice_Site_p.V186_splice	NM_015392	NP_056207	Q9NQX5	NPDC1_HUMAN	neural proliferation, differentiation and							integral to membrane					0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		CCAAGACCTACCAAGGGCGAG	0.721													4	22					0	0	0.009096	0	0
PPP2R3B	28227	broad.mit.edu	37	X	302650	302650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:302650C>T	uc004cpg.2	-	8	1254	c.1053G>A	c.(1051-1053)ATG>ATA	p.M351I	PPP2R3B_uc004cpf.2_5'Flank	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	351					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCCTGTCTATCATCTTGGTAG	0.647													68	113					0	0	0.014410	0	0
MXRA5	25878	broad.mit.edu	37	X	3239853	3239853	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:3239853A>C	uc004crg.3	-	5	4030	c.3873T>G	c.(3871-3873)GAT>GAG	p.D1291E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1291						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AATCTAAGGAATCATAAGGGC	0.378													83	131					0	0	0.014410	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069260	6069260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:6069260G>A	uc010ndh.2	-	2	749	c.248C>T	c.(247-249)ACT>ATT	p.T83I	NLGN4X_uc004crp.2_Missense_Mutation_p.T83I|NLGN4X_uc004crq.2_Missense_Mutation_p.T83I|NLGN4X_uc010ndi.2_Missense_Mutation_p.T83I|NLGN4X_uc004crr.2_Missense_Mutation_p.T83I|NLGN4X_uc010ndj.2_Missense_Mutation_p.T83I	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	83	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CCTCTCTCCAGTGGGGGGTGA	0.567													34	50					0	0	0.019004	0	0
KAL1	3730	broad.mit.edu	37	X	8565122	8565122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:8565122G>A	uc004csf.2	-	4	644	c.494C>T	c.(493-495)TCG>TTG	p.S165L		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	165	WAP.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						ACACCCATTCGAACAACATTT	0.522													27	29					0	0	0.010818	0	0
TBL1X	6907	broad.mit.edu	37	X	9665457	9665457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:9665457C>T	uc010ndq.2	+	12	1470	c.1102C>T	c.(1102-1104)CCT>TCT	p.P368S	TBL1X_uc004csq.3_Missense_Mutation_p.P317S|TBL1X_uc010ndr.2_Missense_Mutation_p.P317S|TBL1X_uc004csr.2_Missense_Mutation_p.P368S|TBL1X_uc004css.2_Missense_Mutation_p.P319S	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	368					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				ACAGCAGTTTCCTTTTCATTC	0.259													70	126					0	0	0.014410	0	0
MID1	4281	broad.mit.edu	37	X	10422960	10422960	+	Silent	SNP	A	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:10422960A>G	uc004cte.3	-	9	1796	c.1605T>C	c.(1603-1605)TTT>TTC	p.F535F	MID1_uc004ctd.3_Silent_p.F246F|MID1_uc004ctg.3_Silent_p.F535F|MID1_uc004cth.3_Silent_p.F497F|MID1_uc004ctk.3_Silent_p.F535F|MID1_uc004cti.3_Silent_p.F535F|MID1_uc004ctj.3_Silent_p.F535F|MID1_uc011mie.1_RNA|MID1_uc004csz.3_Silent_p.F207F|MID1_uc004cta.3_Silent_p.F291F|MID1_uc004ctb.3_Silent_p.F195F|MID1_uc004ctc.3_Silent_p.F302F	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	535	B30.2/SPRY.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						CACTATCAATAAACACATTTC	0.433													4	70					0	0	0.014758	0	0
EGFL6	25975	broad.mit.edu	37	X	13588040	13588040	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:13588040C>T	uc004cvi.2	+	1	300	c.60C>T	c.(58-60)TTC>TTT	p.F20F	EGFL6_uc004cvj.2_Silent_p.F20F|EGFL6_uc011mik.1_Intron	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	20					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						CAGGTGGTTTCGGGAACGCGG	0.692													25	43					0	0	0.006320	0	0
GPM6B	2824	broad.mit.edu	37	X	13801602	13801602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:13801602G>A	uc004cvz.2	-	3	578	c.287C>T	c.(286-288)TCC>TTC	p.S96F	GPM6B_uc004cvx.2_Missense_Mutation_p.S77F|GPM6B_uc011min.1_Missense_Mutation_p.S10F|GPM6B_uc004cwa.2_Missense_Mutation_p.S77F|GPM6B_uc004cvw.2_Missense_Mutation_p.S136F|GPM6B_uc011mim.1_Missense_Mutation_p.S110F|GPM6B_uc004cvy.2_Missense_Mutation_p.S136F	NM_005278	NP_005269	Q13491	GPM6B_HUMAN	glycoprotein M6B isoform 3	96	Helical; (Potential).				cell differentiation|nervous system development	integral to membrane					0						GAAGAAAAAGGACGCAATTCC	0.423													58	66					0	0	0.014410	0	0
NHS	4810	broad.mit.edu	37	X	17746877	17746877	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:17746877T>C	uc004cxx.2	+	7	4606	c.4268T>C	c.(4267-4269)TTA>TCA	p.L1423S	NHS_uc011mix.1_Missense_Mutation_p.L1444S|NHS_uc004cxy.2_Missense_Mutation_p.L1267S|NHS_uc004cxz.2_Missense_Mutation_p.L1246S|NHS_uc004cya.2_Missense_Mutation_p.L1146S	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1423						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					ACTGAGGATTTATTTGCAGTC	0.448													49	59					0	0	0.014410	0	0
BEND2	139105	broad.mit.edu	37	X	18213556	18213556	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:18213556T>C	uc004cyj.3	-	7	1194	c.1040A>G	c.(1039-1041)AAA>AGA	p.K347R	BEND2_uc010nfb.2_Intron	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	347										ovary(3)|kidney(1)|central_nervous_system(1)	5						AAGTATAATTTTCTCAGCTAT	0.239													17	45					0	0	0.004990	0	0
BEND2	139105	broad.mit.edu	37	X	18234812	18234812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:18234812C>T	uc004cyj.3	-	2	221	c.67G>A	c.(67-69)GAT>AAT	p.D23N	BEND2_uc010nfb.2_Missense_Mutation_p.D23N	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	23										ovary(3)|kidney(1)|central_nervous_system(1)	5						ATACTGCAATCATTGTTATCA	0.338													27	43					0	0	0.021523	0	0
PHEX	5251	broad.mit.edu	37	X	22129679	22129679	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:22129679G>A	uc004dah.2	+	10	1376	c.1173_splice	c.e10+1	p.R391_splice	PHEX_uc011mjr.1_Splice_Site_p.R391_splice|PHEX_uc011mjs.1_Splice_Site_p.R294_splice	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase						biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						ATTCTCAAGGGTAAGTTTAAG	0.383													59	90					0	0	0.014410	0	0
ZNF645	158506	broad.mit.edu	37	X	22292216	22292216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:22292216G>A	uc004dai.1	+	1	1157	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	370						intracellular	zinc ion binding			lung(1)|pancreas(1)	2						TCAGTTCACCGAAAATCAAGA	0.448													48	76					0	0	0.014410	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398358	23398358	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:23398358C>T	uc004dal.3	+	2	1010	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	PTCHD1_uc010nfu.1_Silent_p.F334F	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	334	Helical; (Potential).|SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						GAGTCCCTTTCGTCATGCTAG	0.483													64	83					0	0	0.014410	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973871	29973871	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:29973871C>T	uc004dby.2	+	11	2533	c.2025C>T	c.(2023-2025)GCC>GCT	p.A675A		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	675	Cytoplasmic (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						CAGATGAGGCCCACACAAACA	0.532													20	26					0	0	0.007413	0	0
DMD	1756	broad.mit.edu	37	X	31152236	31152236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:31152236G>A	uc004dda.1	-	77	11241	c.10997C>T	c.(10996-10998)TCC>TTC	p.S3666F	DMD_uc004dcq.1_Missense_Mutation_p.S937F|DMD_uc004dcr.1_Missense_Mutation_p.S1086F|DMD_uc004dcs.1_Missense_Mutation_p.S1096F|DMD_uc004dct.1_Missense_Mutation_p.S1206F|DMD_uc004dcu.1_Missense_Mutation_p.S1206F|DMD_uc004dcv.1_Missense_Mutation_p.S1193F|DMD_uc004dcw.2_Missense_Mutation_p.S2322F|DMD_uc004dcx.2_Missense_Mutation_p.S2325F|DMD_uc004dcz.2_Missense_Mutation_p.S3543F|DMD_uc004dcy.1_Missense_Mutation_p.S3662F|DMD_uc004ddb.1_Missense_Mutation_p.S3658F|DMD_uc004dcm.1_Missense_Mutation_p.S598F|DMD_uc004dcn.1_Missense_Mutation_p.S585F|DMD_uc004dco.1_Missense_Mutation_p.S598F|DMD_uc004dcp.1_Missense_Mutation_p.S585F|DMD_uc011mkb.1_Missense_Mutation_p.S488F	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3666					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ACTAGGGAAGGAGTTGTTGAG	0.468													17	25					0	0	0.007413	0	0
FAM47A	158724	broad.mit.edu	37	X	34148766	34148766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:34148766G>A	uc004ddg.2	-	1	1663	c.1630C>T	c.(1630-1632)CGC>TGC	p.R544C		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	544										ovary(4)|central_nervous_system(1)	5						AGCTCCGGGCGGAGACTGGAC	0.637													50	62					0	0	0.014410	0	0
FAM47A	158724	broad.mit.edu	37	X	34150082	34150082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:34150082G>A	uc004ddg.2	-	1	347	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	105										ovary(4)|central_nervous_system(1)	5						AGAGAGCTTGGAAAATAGGGC	0.547													62	96					0	0	0.014410	0	0
FAM47B	170062	broad.mit.edu	37	X	34960955	34960955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:34960955G>A	uc004ddi.1	+	1	25	c.7G>A	c.(7-9)GAC>AAC	p.D3N		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	3										ovary(3)|breast(1)	4						CACCATGGGGGACCGGAGGCC	0.627													7	13					0	0	0.003080	0	0
FAM47B	170062	broad.mit.edu	37	X	34961495	34961495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:34961495C>T	uc004ddi.1	+	1	565	c.547C>T	c.(547-549)CCC>TCC	p.P183S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	183										ovary(3)|breast(1)	4						TGGTAAATATCCCTGTGGGGA	0.642													26	51					0	0	0.024334	0	0
CXorf22	170063	broad.mit.edu	37	X	35974178	35974178	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:35974178C>T	uc004ddj.2	+	8	1334	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	425										large_intestine(1)|lung(1)|ovary(1)	3						AACCTTGTTTCATGGGTGAAC	0.363													35	55					0	0	0.017118	0	0
CXorf59	286464	broad.mit.edu	37	X	36116914	36116914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:36116914C>T	uc004ddk.1	+	6	832	c.646C>T	c.(646-648)CAA>TAA	p.Q216*		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	216						integral to membrane				central_nervous_system(1)	1						TTTTAGTGCTCAAGGAGGATG	0.269													4	5					0	0	0.009096	0	0
PRRG1	5638	broad.mit.edu	37	X	37312440	37312440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:37312440G>A	uc004ddn.2	+	5	476	c.223G>A	c.(223-225)GGA>AGA	p.G75R	PRRG1_uc004ddo.2_Missense_Mutation_p.G75R	NM_000950	NP_000941	O14668	TMG1_HUMAN	proline rich Gla (G-carboxyglutamic acid) 1	75	Extracellular (Potential).					extracellular region|integral to plasma membrane	calcium ion binding			ovary(1)|breast(1)	2						GAGTAACCGAGGAAGTGACTG	0.373													16	18					0	0	0.024245	0	0
MAOB	4129	broad.mit.edu	37	X	43628571	43628571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:43628571C>T	uc004dfz.3	-	13	1506	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K	MAOB_uc011mkx.1_Missense_Mutation_p.G395E|MAOB_uc011mky.1_Missense_Mutation_p.E428K	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	444	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	GCTGCTCTCTCCCCGGCCTCT	0.572													16	21					0	0	0.006122	0	0
PHF16	9767	broad.mit.edu	37	X	46913940	46913940	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:46913940G>A	uc004dgx.2	+	9	1404	c.1353G>A	c.(1351-1353)GAG>GAA	p.E451E	PHF16_uc004dgy.2_Silent_p.E451E	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	451					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						CTCCAAAGGAGGATGAAGAAA	0.458													17	21					0	0	0.028581	0	0
ZNF81	347344	broad.mit.edu	37	X	47775871	47775871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:47775871C>T	uc010nhy.1	+	6	2194	c.1826C>T	c.(1825-1827)CCA>CTA	p.P609L		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	609						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				GGGGAGAAACCATATATATGT	0.388													13	24					0	0	0.013537	0	0
SSX6	280657	broad.mit.edu	37	X	47979002	47979002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:47979002G>A	uc004dix.1	+	7	675	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						CGACCCTGAGGAAGATGACAA	0.493													181	297					0	0	0.014410	0	0
PORCN	64840	broad.mit.edu	37	X	48372729	48372729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:48372729C>T	uc010nie.1	+	9	979	c.821C>T	c.(820-822)ACC>ATC	p.T274I	PORCN_uc004djr.1_Missense_Mutation_p.T269I|PORCN_uc004djs.1_Missense_Mutation_p.T263I|PORCN_uc004djt.1_Missense_Mutation_p.T192I|PORCN_uc011mlx.1_Missense_Mutation_p.T192I|PORCN_uc004dju.1_Missense_Mutation_p.T132I|PORCN_uc004djv.1_Missense_Mutation_p.T274I|PORCN_uc004djw.1_Missense_Mutation_p.T268I	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	274	Cytoplasmic (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						GCTGGCTTTACCGAGGAGAAG	0.632													21	45					0	0	0.008871	0	0
AKAP4	8852	broad.mit.edu	37	X	49957961	49957961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:49957961G>A	uc004dow.1	-	5	1527	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.S290F|AKAP4_uc004dou.1_Missense_Mutation_p.S459F	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	468					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TTTCATGGTGGAGAATTCAAG	0.438													54	69					0	0	0.014410	0	0
AKAP4	8852	broad.mit.edu	37	X	49963310	49963310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:49963310C>T	uc004dow.1	-	2	245	c.121G>A	c.(121-123)GTG>ATG	p.V41M	AKAP4_uc004dov.1_Missense_Mutation_p.V32M|AKAP4_uc010njp.1_Translation_Start_Site|AKAP4_uc004dou.1_Missense_Mutation_p.V32M	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	41					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TATCTTACCACTTTCCGGTCC	0.453													11	27					0	0	0.008291	0	0
DGKK	139189	broad.mit.edu	37	X	50134468	50134468	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:50134468C>A	uc010njr.1	-	11	1871	c.1811G>T	c.(1810-1812)AGA>ATA	p.R604I		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	604	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					CTGCTCCACTCTGTTGAGGAT	0.527													54	69					4.09106e-26	4.17253e-26	0.014410	1	0
SSX7	280658	broad.mit.edu	37	X	52681979	52681979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:52681979G>A	uc004dqx.1	-	3	284	c.125C>T	c.(124-126)TCC>TTC	p.S42F		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	42	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TTTCTCCAAGGATTTCATCTT	0.378													41	78					0	0	0.010771	0	0
SPANXN5	494197	broad.mit.edu	37	X	52825638	52825638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:52825638C>T	uc004drc.1	-	2	109	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	37											0	Ovarian(276;0.236)					AAACTCGGTTCGAGGACTAAG	0.388													36	47					0	0	0.017118	0	0
SPANXN5	494197	broad.mit.edu	37	X	52826358	52826358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:52826358C>T	uc004drc.1	-	1	31	c.31G>A	c.(31-33)GAG>AAG	p.E11K		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	11											0	Ovarian(276;0.236)					TTCCTCTTCTCCCCATTGGTG	0.343													35	103					0	0	0.027894	0	0
SPANXN5	494197	broad.mit.edu	37	X	52826386	52826386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:52826386C>T	uc004drc.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	1											0	Ovarian(276;0.236)					TGGGCTTTTCCATGATTCTGG	0.433													33	97					0	0	0.023175	0	0
IQSEC2	23096	broad.mit.edu	37	X	53283775	53283776	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:53283775_53283776GG>AA	uc004dsd.2	-	4	1538_1539	c.1337_1338CC>TT	c.(1336-1338)TCC>TTT	p.S446F	IQSEC2_uc004dsc.2_Missense_Mutation_p.S241F	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	436					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						ATGTGGTGACGGAGCTTCCACC	0.579													27	59					0	0	0.004672	0	0
HUWE1	10075	broad.mit.edu	37	X	53566728	53566728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:53566728G>A	uc004dsp.2	-	75	11924	c.11522C>T	c.(11521-11523)CCA>CTA	p.P3841L	HUWE1_uc004dsn.2_Missense_Mutation_p.P2649L|HUWE1_uc004dsq.1_Missense_Mutation_p.P141L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3841					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TAACTCAGGTGGTCTTTCTTC	0.522													23	24					0	0	0.016522	0	0
PHF8	23133	broad.mit.edu	37	X	54037565	54037565	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:54037565G>A	uc004dsu.2	-	8	1117	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	PHF8_uc004dst.2_Silent_p.F312F|PHF8_uc004dsv.2_Silent_p.F178F|PHF8_uc004dsw.2_Silent_p.F312F|PHF8_uc004dsx.2_Silent_p.F76F|PHF8_uc004dsy.2_Silent_p.F312F	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	348	JmjC.				brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CTGTGGGAATGAAAAGTGTCT	0.498													28	35					0	0	0.008361	0	0
TRO	7216	broad.mit.edu	37	X	54951462	54951462	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:54951462C>T	uc004dtq.2	+	6	1553	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F	TRO_uc004dts.2_Silent_p.F482F|TRO_uc004dtr.2_Silent_p.F482F|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Silent_p.F85F|TRO_uc011mok.1_Silent_p.F13F|TRO_uc004dtw.2_Silent_p.F85F|TRO_uc004dtx.2_5'UTR	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	482	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						ATGAATATTTCCCAGAAATCA	0.502													20	27					0	0	0.016522	0	0
MTMR8	55613	broad.mit.edu	37	X	63557241	63557241	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:63557241G>A	uc004dvs.2	-	9	1076	c.1008C>T	c.(1006-1008)GTC>GTT	p.V336V	MTMR8_uc011mou.1_Silent_p.V336V|MTMR8_uc004dvt.1_Silent_p.V336V	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	336	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CAGAACAATGGACTAAGACAC	0.458													6	11					0	0	0.021553	0	0
HEPH	9843	broad.mit.edu	37	X	65390543	65390543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:65390543G>A	uc011moz.1	+	2	200	c.140G>A	c.(139-141)AGA>AAA	p.R47K	HEPH_uc004dwn.2_Missense_Mutation_p.R47K|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Missense_Mutation_p.R47K|HEPH_uc011mpa.1_Missense_Mutation_p.R47K	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	44	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CCCAAGGGAAGAAATGTCATC	0.498													11	11					0	0	0.013537	0	0
HEPH	9843	broad.mit.edu	37	X	65486505	65486505	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:65486505C>T	uc011moz.1	+	21	3537	c.3477C>T	c.(3475-3477)TTC>TTT	p.F1159F	HEPH_uc004dwn.2_Silent_p.F1158F|HEPH_uc004dwo.2_Silent_p.F889F|HEPH_uc010nkr.2_Silent_p.F967F|HEPH_uc011mpa.1_Silent_p.F1159F	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1156	Cytoplasmic (Potential).				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TTCTGTCTTTCAAACAGTAAC	0.507													15	8					0	0	0.020292	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69424823	69424823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:69424823C>T	uc004dxx.1	+	7	978	c.881C>T	c.(880-882)CCC>CTC	p.P294L		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	294					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						CTTCCAATTCCCAGGATTAAG	0.468													16	22					0	0	0.007413	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433935	72433935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:72433935C>T	uc004ebi.2	-	1	750	c.394G>A	c.(394-396)GAA>AAA	p.E132K	NAP1L2_uc011mqj.1_5'UTR	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	132					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCATGAAATTCCCTCAGGAAT	0.383													64	112					0	0	0.014410	0	0
TSIX	9383	broad.mit.edu	37	X	73046874	73046874	+	RNA	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:73046874C>T	uc004ebn.2	+	1		c.34835C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GGAACATGGGCTTTCCATCTT	0.488													36	46					0	0	0.015359	0	0
XIST	7503	broad.mit.edu	37	X	73065803	73065804	+	RNA	DNP	TG	AT	AT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:73065803_73065804TG>AT	uc004ebm.1	-	1		c.6785_6786CA>AT				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTTATTCAGATGGAATGGGCAA	0.465													66	95					0	0	0.004672	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963843	73963843	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:73963843C>T	uc004eby.2	-	3	1166	c.549G>A	c.(547-549)GGG>GGA	p.G183G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	183					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TACACTGAATCCCTATATCAG	0.458													21	33					0	0	0.008871	0	0
PCDH11X	27328	broad.mit.edu	37	X	91134201	91134201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:91134201C>T	uc004efk.1	+	2	3807	c.2962C>T	c.(2962-2964)CCC>TCC	p.P988S	PCDH11X_uc004efl.1_Missense_Mutation_p.P988S|PCDH11X_uc004efo.1_Missense_Mutation_p.P988S|PCDH11X_uc010nmv.1_Missense_Mutation_p.P988S|PCDH11X_uc004efm.1_Missense_Mutation_p.P988S|PCDH11X_uc004efn.1_Missense_Mutation_p.P988S|PCDH11X_uc004efh.1_Missense_Mutation_p.P988S|PCDH11X_uc004efj.1_Missense_Mutation_p.P988S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	988	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CAGTTCAGATCCCTACAGCGT	0.493													79	113					0	0	0.014410	0	0
PCDH19	57526	broad.mit.edu	37	X	99597041	99597041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:99597041C>T	uc010nmz.2	-	5	4384	c.2708G>A	c.(2707-2709)AGC>AAC	p.S903N	PCDH19_uc004efw.3_Missense_Mutation_p.S855N|PCDH19_uc004efx.3_Missense_Mutation_p.S856N	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	903	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						ATCCTTCAGGCTGTTGCCCTC	0.468													48	76					0	0	0.014410	0	0
SYTL4	94121	broad.mit.edu	37	X	99933419	99933419	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:99933419G>A	uc004egd.3	-	18	2192	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F	SYTL4_uc004egc.2_Silent_p.F43F|SYTL4_uc010nnb.2_Silent_p.F284F|SYTL4_uc010nnc.2_Silent_p.F612F|SYTL4_uc004ege.3_Silent_p.F612F|SYTL4_uc004egf.3_Silent_p.F612F	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	612	C2 2.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCCCTCCCAGGAAGTCATTGC	0.527													34	51					0	0	0.017118	0	0
ARL13A	392509	broad.mit.edu	37	X	100240691	100240691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:100240691G>A	uc004ego.2	+	4	282	c.166G>A	c.(166-168)GAA>AAA	p.E56K	ARL13A_uc011mrf.1_Missense_Mutation_p.E56K|ARL13A_uc010nng.2_Missense_Mutation_p.E56K	NM_001012990	NP_001013008	Q5H913	AR13A_HUMAN	ADP-ribosylation factor-like 13 isoform a	56							GTP binding			ovary(1)	1						CATGAAATCGGAACTGACTAC	0.448													29	48					0	0	0.013726	0	0
TRMT2B	79979	broad.mit.edu	37	X	100291999	100291999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:100291999G>A	uc004egq.2	-	5	801	c.502C>T	c.(502-504)CCA>TCA	p.P168S	TRMT2B_uc004egp.2_RNA|TRMT2B_uc004egr.2_Missense_Mutation_p.P168S|TRMT2B_uc004egs.2_Missense_Mutation_p.P168S|TRMT2B_uc004egt.2_Missense_Mutation_p.P168S|TRMT2B_uc004egu.2_Missense_Mutation_p.P49S|TRMT2B_uc004egv.2_Missense_Mutation_p.P123S	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B	168							tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						ACAGTCTTTGGATTGCCATCT	0.498													55	73					0	0	0.014410	0	0
TCEAL2	140597	broad.mit.edu	37	X	101382381	101382381	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:101382381G>A	uc004eip.2	+	3	798	c.579G>A	c.(577-579)TGG>TGA	p.W193*		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CGTTTTTGTGGATGCAAAGAA	0.463													113	203					0	0	0.014410	0	0
ARMCX5	64860	broad.mit.edu	37	X	101857410	101857410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:101857410C>T	uc004ejg.2	+	6	1222	c.341C>T	c.(340-342)TCT>TTT	p.S114F	ARMCX5_uc004ejh.2_Missense_Mutation_p.S114F	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	114							binding			ovary(1)	1						ATGCCTATGTCTAGGGTCAGT	0.448													70	92					0	0	0.014410	0	0
NRK	203447	broad.mit.edu	37	X	105150443	105150443	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:105150443G>A	uc004emd.2	+	11	1185	c.882G>A	c.(880-882)ACG>ACA	p.T294T	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	294	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						AAAAGTGTACGATAAAAAATT	0.378										HNSCC(51;0.14)			4	5					0	0	0.009096	0	0
MID2	11043	broad.mit.edu	37	X	107170186	107170186	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:107170186C>T	uc004enl.2	+	10	2664	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	MID2_uc004enk.2_Silent_p.S667S	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	697	B30.2/SPRY.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						GGAACAAATCCCTAATGATCC	0.448													29	40					0	0	0.009535	0	0
DCX	1641	broad.mit.edu	37	X	110544971	110544971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:110544971C>T	uc004epd.2	-	7	1442	c.1270G>A	c.(1270-1272)GAC>AAC	p.D424N	DCX_uc011msv.1_Missense_Mutation_p.D429N|DCX_uc004epe.2_Missense_Mutation_p.D343N|DCX_uc004epf.2_Missense_Mutation_p.D348N|DCX_uc004epg.2_Missense_Mutation_p.D343N	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	424					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						AGGTACAGGTCCTATAAGAAG	0.383													29	39					0	0	0.012213	0	0
AGTR2	186	broad.mit.edu	37	X	115304600	115304600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:115304600G>A	uc004eqh.3	+	3	1274	c.1067G>A	c.(1066-1068)AGA>AAA	p.R356K		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	356	Cytoplasmic (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						AGTTCTCTTAGAGAAATGGAG	0.423													23	41					0	0	0.016522	0	0
UPF3B	65109	broad.mit.edu	37	X	118968933	118968933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:118968933G>A	uc004erz.1	-	11	1437	c.1360C>T	c.(1360-1362)CCC>TCC	p.P454S	UPF3B_uc004esa.1_Missense_Mutation_p.P441S	NM_080632	NP_542199	Q9BZI7	REN3B_HUMAN	UPF3 regulator of nonsense transcripts homolog B	454	Sufficient for association with EJC core.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|termination of RNA polymerase II transcription	cytosol|exon-exon junction complex|nucleoplasm	mRNA binding|nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(2)|kidney(1)	3						TCATCAGGGGGACAGAGTCGA	0.458													111	147					0	0	0.014410	0	0
UPF3B	65109	broad.mit.edu	37	X	118974617	118974617	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:118974617G>A	uc004erz.1	-	8	915	c.838C>T	c.(838-840)CAG>TAG	p.Q280*	UPF3B_uc004esa.1_Intron	NM_080632	NP_542199	Q9BZI7	REN3B_HUMAN	UPF3 regulator of nonsense transcripts homolog B	280	Sufficient for association with EJC core.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|termination of RNA polymerase II transcription	cytosol|exon-exon junction complex|nucleoplasm	mRNA binding|nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(2)|kidney(1)	3						ACATTTTTCTGATTCACAGCT	0.378													19	31					0	0	0.008871	0	0
CT47B1	643311	broad.mit.edu	37	X	120008991	120008992	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:120008991_120008992CC>TT	uc011muc.1	-	1	788_789	c.533_534GG>AA	c.(532-534)GGG>GAA	p.G178E		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	178											0						GGGCTGCAGCCCCTGCACCCAG	0.703													38	61					0	0	0.004672	0	0
THOC2	57187	broad.mit.edu	37	X	122758411	122758411	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:122758411T>G	uc004etu.2	-	26	3199	c.3167A>C	c.(3166-3168)GAT>GCT	p.D1056A	THOC2_uc010nqt.1_5'Flank|THOC2_uc004etw.1_5'Flank	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1056					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TGTGGCTCTATCACTATGCCA	0.358													69	76					0	0	0.014410	0	0
ODZ1	10178	broad.mit.edu	37	X	123515010	123515010	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:123515010G>A	uc004euj.2	-	31	7618	c.7554C>T	c.(7552-7554)GTC>GTT	p.V2518V	ODZ1_uc011muj.1_Silent_p.V2524V|ODZ1_uc010nqy.2_Silent_p.V2525V	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2518	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAACAGAAGGGACAGCAGCAA	0.458													31	60					0	0	0.009535	0	0
ODZ1	10178	broad.mit.edu	37	X	123838900	123838900	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:123838900G>A	uc004euj.2	-	5	1042	c.978C>T	c.(976-978)ATC>ATT	p.I326I	ODZ1_uc011muj.1_Silent_p.I326I|ODZ1_uc010nqy.2_Silent_p.I326I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	326	Helical; (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAGTCACTGTGATTGCAGTGG	0.463													51	75					0	0	0.014410	0	0
UTP14A	10813	broad.mit.edu	37	X	129053176	129053176	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:129053176T>G	uc004euz.2	+	7	591	c.563T>G	c.(562-564)ATT>AGT	p.I188S	UTP14A_uc011mup.1_Missense_Mutation_p.I136S|UTP14A_uc011muq.1_Missense_Mutation_p.I134S|UTP14A_uc004eva.1_5'Flank	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	188					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						GAGCAGGAAATTTTCAACCTC	0.458													80	136					0	0	0.014410	0	0
ENOX2	10495	broad.mit.edu	37	X	129813720	129813720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:129813720G>A	uc004evw.2	-	7	761	c.343C>T	c.(343-345)CTC>TTC	p.L115F	ENOX2_uc004evx.2_Missense_Mutation_p.L86F|ENOX2_uc004evy.2_Missense_Mutation_p.L86F|ENOX2_uc004evv.2_5'UTR	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	115	Pro-rich.				cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						GGAGGTGGGAGATCTAAGTTG	0.423													30	53					0	0	0.007291	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130217855	130217855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:130217855G>A	uc004evz.2	+	4	812	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	ARHGAP36_uc004ewa.2_Missense_Mutation_p.R144Q|ARHGAP36_uc004ewb.2_Missense_Mutation_p.R125Q|ARHGAP36_uc004ewc.2_Missense_Mutation_p.R20Q	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	156	Arg-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						AACGTGGTGCGAAGGGTGTTT	0.617													50	97					0	0	0.014410	0	0
IGSF1	3547	broad.mit.edu	37	X	130409177	130409177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:130409177C>T	uc004ewd.2	-	17	3506	c.3268G>A	c.(3268-3270)GAA>AAA	p.E1090K	IGSF1_uc004ewe.3_Missense_Mutation_p.E1084K|IGSF1_uc004ewf.2_Missense_Mutation_p.E1070K	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1090	Extracellular (Potential).|Ig-like C2-type 11.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TCTGGCAGTTCCCCTTGACAC	0.547													100	154					0	0	0.014410	0	0
IGSF1	3547	broad.mit.edu	37	X	130419851	130419851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:130419851G>A	uc004ewd.2	-	4	507	c.269C>T	c.(268-270)TCA>TTA	p.S90L	IGSF1_uc004ewe.3_Missense_Mutation_p.S79L|IGSF1_uc004ewf.2_Missense_Mutation_p.S70L|IGSF1_uc004ewg.2_Missense_Mutation_p.S90L	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	90	Ig-like C2-type 1.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TATAAGGAATGAAACTTGGAA	0.512													78	129					0	0	0.014410	0	0
USP26	83844	broad.mit.edu	37	X	132160489	132160489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:132160489G>A	uc010nrm.1	-	6	2230	c.1760C>T	c.(1759-1761)TCA>TTA	p.S587L	USP26_uc011mvf.1_Missense_Mutation_p.S587L	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	587					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TGCAGGCCATGATACACTGAT	0.418													22	32					0	0	0.012319	0	0
USP26	83844	broad.mit.edu	37	X	132161803	132161803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:132161803C>T	uc010nrm.1	-	6	916	c.446G>A	c.(445-447)GGA>GAA	p.G149E	USP26_uc011mvf.1_Missense_Mutation_p.G149E	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	149					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TGTCCCACTTCCTTTTGCTAT	0.393													17	14					0	0	0.028581	0	0
GPC3	2719	broad.mit.edu	37	X	132730588	132730588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:132730588C>T	uc004exe.1	-	7	1643	c.1453G>A	c.(1453-1455)GAT>AAT	p.D485N	GPC3_uc004exd.1_Missense_Mutation_p.D357N|GPC3_uc010nrn.1_Missense_Mutation_p.D508N|GPC3_uc011mvh.1_Missense_Mutation_p.D469N|GPC3_uc010nro.1_Missense_Mutation_p.D431N	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	485						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					AGGTTTTTATCCAGAACTCTA	0.448			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				42	95					0	0	0.009718	0	0
SAGE1	55511	broad.mit.edu	37	X	134991025	134991026	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:134991025_134991026GC>AA	uc004ezh.2	+	13	1611_1612	c.1444_1445GC>AA	c.(1444-1446)GCT>AAT	p.A482N	SAGE1_uc010nry.1_Missense_Mutation_p.A451N|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	482										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTTTCCAGATGCTACCATTACT	0.431													37	56					0	0	0.004672	0	0
SAGE1	55511	broad.mit.edu	37	X	134993770	134993770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:134993770G>A	uc004ezh.2	+	18	2346	c.2179G>A	c.(2179-2181)GAG>AAG	p.E727K	SAGE1_uc010nry.1_Missense_Mutation_p.E696K|SAGE1_uc011mvv.1_Missense_Mutation_p.E351K	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	727										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CCAGGAGGAGGAGATGGAAAA	0.428													64	88					0	0	0.014410	0	0
GPR112	139378	broad.mit.edu	37	X	135496359	135496359	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:135496359G>A	uc004ezu.1	+	25	9369	c.9078G>A	c.(9076-9078)CAG>CAA	p.Q3026Q	GPR112_uc010nsb.1_Silent_p.Q2821Q	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	3026	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GATATAAACAGGAGGGACTAA	0.348													47	90					0	0	0.014410	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969394	140969394	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:140969394C>T	uc011mwp.1	+	4	721	c.721C>T	c.(721-723)CTG>TTG	p.L241L		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	241	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGGCATTTCCCTGACAGAAGT	0.478													80	102					0	0	0.014410	0	0
MAGEC3	139081	broad.mit.edu	37	X	140983291	140983291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:140983291G>A	uc011mwp.1	+	6	1069	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	MAGEC3_uc004fbs.2_Intron|MAGEC3_uc010nsj.2_5'Flank	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	357	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCACAGACAGGAAGATGGCCG	0.592													18	31					0	0	0.006122	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993398	140993398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:140993398C>T	uc004fbt.2	+	4	494	c.208C>T	c.(208-210)CCT>TCT	p.P70S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	70							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAGAGACCTCCTGAGGG	0.582										HNSCC(15;0.026)			67	113					0	0	0.014410	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993536	140993536	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:140993536C>T	uc004fbt.2	+	4	632	c.346C>T	c.(346-348)CAG>TAG	p.Q116*	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	116							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGATTTCTCAGAGCCCTCC	0.532										HNSCC(15;0.026)			80	98					0	0	0.014410	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717586	142717586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:142717586C>T	uc004fbx.2	-	2	1715	c.1339G>A	c.(1339-1341)GGT>AGT	p.G447S	SLITRK4_uc004fby.2_Missense_Mutation_p.G447S	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	447	Extracellular (Potential).|LRR 9.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TTATGAAGACCTGAAAATATT	0.368													43	60					0	0	0.007835	0	0
MAGEA11	4110	broad.mit.edu	37	X	148797942	148797942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:148797942G>A	uc004fdq.2	+	5	898	c.796G>A	c.(796-798)GAA>AAA	p.E266K	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.E237K	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	266	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GATATTTAGGGAAGCCTCTGT	0.473													117	133					0	0	0.014410	0	0
PASD1	139135	broad.mit.edu	37	X	150791502	150791502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:150791502G>A	uc004fev.3	+	7	844	c.512G>A	c.(511-513)GGA>GAA	p.G171E		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	171						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TATCTTGTGGGAAATGTTTGC	0.512													24	49					0	0	0.016522	0	0
PASD1	139135	broad.mit.edu	37	X	150840850	150840850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:150840850G>A	uc004fev.3	+	14	1965	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	545	Lys-rich.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					gaagCTAcaggagcggaagaa	0.025													8	15					0	0	0.003080	0	0
GABRE	2564	broad.mit.edu	37	X	151128445	151128445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:151128445G>A	uc004ffi.2	-	6	704	c.650C>T	c.(649-651)TCC>TTC	p.S217F	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	217	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGGATAGGAAACTGGAAA	0.443													34	76					0	0	0.025465	0	0
GABRA3	2556	broad.mit.edu	37	X	151366215	151366215	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:151366215T>A	uc010ntk.1	-	8	1061	c.821A>T	c.(820-822)AAA>ATA	p.K274I		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	274	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GTAGCCAATTTTTCGCTTGAG	0.418													31	51					0	0	0.015359	0	0
GABRQ	55879	broad.mit.edu	37	X	151820122	151820122	+	Silent	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:151820122G>A	uc004ffp.1	+	8	1055	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	345	Helical; (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTTGCTGGAGTATGTCTACA	0.512													80	141					0	0	0.014410	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935446	151935446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:151935446C>T	uc004fgp.2	-	3	930	c.721G>A	c.(721-723)GAT>AAT	p.D241N		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	241	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TTCTTGGGATCCCCCAAGATA	0.542													133	217					0	0	0.014410	0	0
FLNA	2316	broad.mit.edu	37	X	153594953	153594953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:153594953G>A	uc004fkk.2	-	7	1291	c.1042C>T	c.(1042-1044)CCC>TCC	p.P348S	FLNA_uc010nuu.1_Missense_Mutation_p.P348S	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	348	Filamin 1.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTCACCTCGGGGACGTACCAG	0.632													66	87					0	0	0.014410	0	0
F8	2157	broad.mit.edu	37	X	154156898	154156898	+	Missense_Mutation	SNP	C	T	T	rs137852373		TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:154156898C>T	uc004fmt.2	-	14	5338	c.5167G>A	c.(5167-5169)GAG>AAG	p.E1723K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1723	F5/8 type A 3.|Plastocyanin-like 5.		E -> K (in HEMA; severe).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CAGAGCCTCTCCACTGCAGCA	0.413													19	16					0	0	0.014323	0	0
F8	2157	broad.mit.edu	37	X	154175986	154175986	+	Silent	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:154175986C>T	uc004fmt.2	-	13	2271	c.2100G>A	c.(2098-2100)TCG>TCA	p.S700S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	700	F5/8 type A 2.|Plastocyanin-like 4.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGTTTTCCATCGACATGAAGA	0.413													61	135					0	0	0.014410	0	0
F8	2157	broad.mit.edu	37	X	154185239	154185239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:154185239C>T	uc004fmt.2	-	11	1916	c.1745G>A	c.(1744-1746)GGA>GAA	p.G582E		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	582	F5/8 type A 2.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding	p.G582E(1)		ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CACCTGGTTTCCTCTTTGATC	0.418													81	125					0	0	0.014410	0	0
NRG3	10718	broad.mit.edu	37	10	83635829	83635829	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr10:83635829delT	uc001kco.2	+	1	760	c.733delT	c.(733-735)TCTfs	p.S245fs	NRG3_uc010qlz.1_Frame_Shift_Del_p.S245fs|NRG3_uc001kcp.2_5'Flank|NRG3_uc001kcq.2_5'Flank	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	245	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTGGACCCTGTCTCCCTTTCA	0.478													22	18	---	---	---	---					
MIR1293	100302220	broad.mit.edu	37	12	50627995	50627995	+	RNA	DEL	T	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:50627995delT	hsa-mir-1293|MI0006355	-			c.1delT			LIMA1_uc001rwj.3_Intron|LIMA1_uc001rwk.3_Intron|LIMA1_uc010smr.1_Intron|LIMA1_uc010sms.1_Intron																	0						CAGAACAACCttttttttttt	0.229													3	5	---	---	---	---					
SLC4A8	9498	broad.mit.edu	37	12	51851189	51851189	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:51851189delT	uc001rys.1	+	6	807	c.629delT	c.(628-630)GTTfs	p.V210fs	SLC4A8_uc010sni.1_Frame_Shift_Del_p.V157fs|SLC4A8_uc001rym.2_Frame_Shift_Del_p.V157fs|SLC4A8_uc001ryn.2_Frame_Shift_Del_p.V157fs|SLC4A8_uc001ryo.2_Frame_Shift_Del_p.V157fs|SLC4A8_uc001ryp.1_Frame_Shift_Del_p.V157fs|SLC4A8_uc010snj.1_Frame_Shift_Del_p.V237fs|SLC4A8_uc001ryq.3_Frame_Shift_Del_p.V210fs|SLC4A8_uc001ryr.2_Frame_Shift_Del_p.V210fs|SLC4A8_uc010snk.1_Frame_Shift_Del_p.V157fs	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	210	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		AGCATGAGGGTTAAAGTGCGG	0.463													31	76	---	---	---	---					
DHX37	57647	broad.mit.edu	37	12	125441343	125441343	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr12:125441343delG	uc001ugy.2	-	18	2446	c.2347delC	c.(2347-2349)CGCfs	p.R783fs		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	783							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TTAGCGTAGCGGGGTGCCACG	0.632													60	222	---	---	---	---					
CPSF2	53981	broad.mit.edu	37	14	92625548	92625549	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr14:92625548_92625549delTC	uc001yah.1	+	14	2280_2281	c.2043_2044delTC	c.(2041-2046)AGTCTGfs	p.S681fs		NM_017437	NP_059133	Q9P2I0	CPSF2_HUMAN	cleavage and polyadenylation specific factor 2	681_682					histone mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	hydrolase activity|protein binding|RNA binding			ovary(2)	2		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.222)		CCATGAAAAGTCTGTTCGGAGA	0.411													21	84	---	---	---	---					
MTMR15	22909	broad.mit.edu	37	15	31196894	31196894	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr15:31196894delA	uc001zff.2	+	2	319	c.28delA	c.(28-30)AAAfs	p.K10fs	MTMR15_uc001zfc.3_Frame_Shift_Del_p.K10fs|MTMR15_uc010azw.2_Frame_Shift_Del_p.K10fs|MTMR15_uc001zfd.3_Frame_Shift_Del_p.K10fs|MTMR15_uc001zfe.2_5'UTR	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	10					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		ACCTCCTGACAAAAAAAGGCC	0.353								Direct_reversal_of_damage|Editing_and_processing_nucleases					8	334	---	---	---	---					
MUC16	94025	broad.mit.edu	37	19	9073231	9073232	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr19:9073231_9073232insA	uc002mkp.2	-	3	14418_14419	c.14214_14215insT	c.(14212-14217)TTTCAGfs	p.F4738fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4740_4741	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTTCATCCTGAAAGGGAGGGT	0.505													46	106	---	---	---	---					
PXDN	7837	broad.mit.edu	37	2	1651987	1651991	+	Frame_Shift_Del	DEL	TCAGG	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:1651987_1651991delTCAGG	uc002qxa.2	-	17	3625_3629	c.3561_3565delCCTGA	c.(3559-3567)GACCTGAAAfs	p.D1187fs		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1187_1189					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		ATCTCATTTTTCAGGTCCTCGAACG	0.561													21	394	---	---	---	---					
WDR35	57539	broad.mit.edu	37	2	20178521	20178521	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:20178521delA	uc002rdi.2	-	5	535	c.427delT	c.(427-429)TCAfs	p.S143fs	WDR35_uc002rdj.2_Frame_Shift_Del_p.S143fs|WDR35_uc010ext.2_RNA	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	143	WD 3.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATCCACTGAACCAACTATC	0.373													22	179	---	---	---	---					
HEATR5B	54497	broad.mit.edu	37	2	37235932	37235932	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr2:37235932delA	uc002rpp.1	-	28	4440	c.4344delT	c.(4342-4344)ATTfs	p.I1448fs	HEATR5B_uc010ezy.1_Frame_Shift_Del_p.I32fs|HEATR5B_uc002rpq.3_Frame_Shift_Del_p.I32fs	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1448							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				CAGTATTTTTAATTGCTCTTT	0.363													90	205	---	---	---	---					
PLXNB2	23654	broad.mit.edu	37	22	50718203	50718223	+	Splice_Site	DEL	GTCCTGGAGTAACACGGAGGG	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr22:50718203_50718223delGTCCTGGAGTAACACGGAGGG	uc003bkv.3	-	27	4349	c.4243_splice	c.e27-1	p.D1415_splice	PLXNB2_uc003bkt.1_Splice_Site_p.D207_splice|PLXNB2_uc003bku.1_Splice_Site_p.D400_splice	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor						regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCCCGGCACTGTCCTGGAGTAACACGGAGGGGAGGCTGGGA	0.629													69	364	---	---	---	---					
ENPP1	5167	broad.mit.edu	37	6	132204842	132204843	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr6:132204842_132204843delAA	uc011ecf.1	+	22	2259_2260	c.2239_2240delAA	c.(2239-2241)AAAfs	p.K747fs		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	747	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	AGAACTAAATAAAAATTCAAGT	0.277													33	59	---	---	---	---					
TRRAP	8295	broad.mit.edu	37	7	98551016	98551016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr7:98551016delT	uc003upp.2	+	39	5878	c.5669delT	c.(5668-5670)ATTfs	p.I1890fs	TRRAP_uc011kis.1_Frame_Shift_Del_p.I1872fs|TRRAP_uc003upr.2_Frame_Shift_Del_p.I1589fs	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1890					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CTGGCGCACATTATCGCCAAA	0.587													44	93	---	---	---	---					
LONRF1	91694	broad.mit.edu	37	8	12598449	12598449	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chr8:12598449delT	uc003wwd.1	-	3	960	c.897delA	c.(895-897)TTAfs	p.L299fs	LONRF1_uc010lsp.1_5'UTR	NM_152271	NP_689484	Q17RB8	LONF1_HUMAN	LON peptidase N-terminal domain and ring finger	299	TPR 4.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			ovary(1)	1				READ - Rectum adenocarcinoma(644;0.236)		GAAAGAGTTGTAAGGCATCAC	0.368													37	149	---	---	---	---					
HDHD1A	8226	broad.mit.edu	37	X	7066113	7066114	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29M-06A-11D-A196-08	TCGA-EE-A29M-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b7f7ab2b-6434-4a48-8a1d-80ba13724a9d	d006b14a-f474-4180-a3c1-41608c08b6d7	g.chrX:7066113_7066114insA	uc004crv.2	-	1	118_119	c.41_42insT	c.(40-42)GACfs	p.D14fs	STS_uc004crw.2_Intron|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|HDHD1A_uc011mhm.1_Frame_Shift_Ins_p.D14fs|HDHD1A_uc011mhn.1_Frame_Shift_Ins_p.D14fs|HDHD1A_uc010ndl.2_Frame_Shift_Ins_p.D14fs|HDHD1A_uc011mho.1_Frame_Shift_Ins_p.D14fs	NM_012080	NP_036212	Q08623	HDHD1_HUMAN	haloacid dehalogenase-like hydrolase domain	14		Magnesium (By similarity).|Nucleophile (By similarity).			nucleotide metabolic process		metal ion binding|phosphatase activity				0		Colorectal(8;0.0114)|Medulloblastoma(8;0.184)				GTCCGTCCATGTCAAAGATGAG	0.713													2	4	---	---	---	---					
